idx int64 0 41.2k | question stringlengths 74 4.21k | target stringlengths 5 888 |
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39,500 | protected PreparedStatement executeSql ( String sql , MapSqlParameterSource args ) { Map < String , Object > parameters = args != null ? args . getValues ( ) : new HashMap < String , Object > ( ) ; for ( Map . Entry < String , Object > placeHolderEntry : parameters . entrySet ( ) ) { String key = placeHolderEntry . get... | executes an SQL string substituting the parameters found in args |
39,501 | private String readSqlFromResource ( Resource resource ) { try ( BufferedReader reader = new BufferedReader ( new InputStreamReader ( new FileInputStream ( resource . getFile ( ) ) , "UTF-8" ) ) ; ) { StringBuilder sqlBuf = new StringBuilder ( ) ; for ( String line = reader . readLine ( ) ; line != null ; line = reader... | Reads the content from a resource into a string . |
39,502 | public static void toDNF ( LogicClause topNode ) { while ( makeDNF ( topNode ) == false ) { } cleanEmptyLeafs ( topNode ) ; flattenDNF ( topNode ) ; } | Transforms an AQL query to the Disjunctive Normal Form . |
39,503 | private static void flattenDNF ( LogicClause top ) { if ( top . getOp ( ) == LogicClause . Operator . LEAF || top . getOp ( ) == LogicClause . Operator . AND ) { List < LogicClause > children = new ArrayList < > ( ) ; findAllChildrenForOp ( top , children , LogicClause . Operator . AND ) ; List < ? extends Token > orgi... | Flatten the clause in the sense that there is only one toplevel OR layer and one layer of AND - clauses . |
39,504 | public List < Long > getDocumentsForMetadata ( QueryData queryData ) { List < Long > corpusList = queryData . getCorpusList ( ) ; if ( ! corpusList . isEmpty ( ) ) { List < QueryAnnotation > metaData = queryData . getMetaData ( ) ; if ( ! metaData . isEmpty ( ) ) { String documentsWithMetaDataSql = subQueryCorpusSelect... | Will query the database which documents are matching according to the given metadata |
39,505 | public void setQueryResultQueue ( BlockingQueue < SaltProject > queue , PagedResultQuery q , ArrayList < Match > allMatches ) { this . projectQueue = queue ; this . currentQuery = q ; this . numberOfResults = allMatches . size ( ) ; this . allMatches = allMatches ; paging . setPageSize ( q . getLimit ( ) , false ) ; pa... | Set a new querys in result panel . |
39,506 | public static Client createRESTClient ( String userName , String password ) { DefaultApacheHttpClient4Config rc = new DefaultApacheHttpClient4Config ( ) ; rc . getClasses ( ) . add ( SaltProjectProvider . class ) ; ThreadSafeClientConnManager clientConnMgr = new ThreadSafeClientConnManager ( ) ; clientConnMgr . setDefa... | Creates an authentificiated REST client |
39,507 | public static List < Annotation > getMetaDataDoc ( String toplevelCorpusName , String documentName ) { List < Annotation > result = new ArrayList < Annotation > ( ) ; WebResource res = Helper . getAnnisWebResource ( ) ; try { res = res . path ( "meta" ) . path ( "doc" ) . path ( urlPathEscape . escape ( toplevelCorpusN... | Retrieve the meta data for a given document of a corpus . |
39,508 | public static CorpusConfig getCorpusConfig ( String corpus ) { if ( corpus == null || corpus . isEmpty ( ) ) { Notification . show ( "no corpus is selected" , "please select at leas one corpus and execute query again" , Notification . Type . WARNING_MESSAGE ) ; return null ; } CorpusConfig corpusConfig = new CorpusConf... | Loads the corpus config of a specific corpus . |
39,509 | public static CorpusConfigMap getCorpusConfigs ( ) { CorpusConfigMap corpusConfigurations = null ; try { corpusConfigurations = Helper . getAnnisWebResource ( ) . path ( "query" ) . path ( "corpora" ) . path ( "config" ) . get ( CorpusConfigMap . class ) ; } catch ( UniformInterfaceException | ClientHandlerException ex... | Loads the all available corpus configurations . |
39,510 | public static CorpusConfigMap getCorpusConfigs ( Set < String > corpora ) { CorpusConfigMap corpusConfigurations = new CorpusConfigMap ( ) ; for ( String corpus : corpora ) { corpusConfigurations . put ( corpus , getCorpusConfig ( corpus ) ) ; } corpusConfigurations . put ( DEFAULT_CONFIG , getDefaultCorpusConfig ( ) )... | Loads the available corpus configurations for a list of specific corpora . |
39,511 | public static Map < String , String > parseFragment ( String fragment ) { Map < String , String > result = new TreeMap < String , String > ( ) ; fragment = StringUtils . removeStart ( fragment , "!" ) ; String [ ] split = StringUtils . split ( fragment , "&" ) ; for ( String s : split ) { String [ ] parts = s . split (... | Parses the fragment . |
39,512 | public static String convertExceptionToMessage ( Throwable ex ) { StringBuilder sb = new StringBuilder ( ) ; if ( ex != null ) { sb . append ( "Exception type: " ) . append ( ex . getClass ( ) . getName ( ) ) . append ( "\n" ) ; sb . append ( "Message: " ) . append ( ex . getLocalizedMessage ( ) ) . append ( "\n" ) ; s... | Returns a formatted string containing the type of the exception the message and the stacktrace . |
39,513 | public static String encodePath ( String v ) { String encoded = urlPathEscape . escape ( v ) ; return encoded ; } | Encodes a String so it can be used as path param . |
39,514 | public static String encodeQueryParam ( String v ) { String encoded = UrlEscapers . urlFormParameterEscaper ( ) . escape ( v ) ; return encoded ; } | Encodes a String so it can be used as query param . |
39,515 | public void writeOutput ( VisualizerInput input , OutputStream outstream ) { try { OutputStreamWriter writer = new OutputStreamWriter ( outstream , getCharacterEncoding ( ) ) ; writeOutput ( input , writer ) ; writer . flush ( ) ; } catch ( IOException ex ) { log . error ( "Exception when writing visualizer output." , ... | Will create a Writer of the outstream . |
39,516 | private static Set < String > getRelationLevelSet ( SDocumentGraph graph , String namespace , Class < ? extends SRelation > type ) { Set < String > result = new TreeSet < > ( ) ; if ( graph != null ) { List < ? extends SRelation > edges = null ; if ( type == SDominanceRelation . class ) { edges = graph . getDominanceRe... | Get the qualified name of all annotations belonging to relations having a specific namespace . |
39,517 | public boolean includeNode ( SNode node ) { if ( node instanceof SToken || configurations . get ( 0 ) == null ) { return true ; } Set < SAnnotation > nodeAnnotations = node . getAnnotations ( ) ; return includeObject ( nodeAnnotations , displayedNodeAnnotations ) ; } | Implements the includeNode method of the org . corpus_tools . salt . util . ExportFilter interface . |
39,518 | public boolean includeRelation ( SRelation relation ) { Map < String , Set < String > > displayedRelAnnotations = new HashMap < String , Set < String > > ( ) ; if ( relation instanceof SPointingRelation ) { if ( configurations . get ( 1 ) == null ) { return true ; } else { displayedRelAnnotations = displayedPointingRel... | Implements the includeRelation method of the org . corpus_tools . salt . util . ExportFilter interface . |
39,519 | public static boolean containsRTLText ( String str ) { if ( str != null ) { for ( int i = 0 ; i < str . length ( ) ; i ++ ) { char cc = str . charAt ( i ) ; if ( cc >= 1425 && cc <= 1785 ) { return true ; } else if ( cc >= 64286 && cc <= 65019 ) { return true ; } else if ( cc >= 65136 && cc <= 65276 ) { return true ; }... | Detects arabic characters in a string . |
39,520 | public static String getSafeFileName ( String orig ) { if ( orig != null ) { return orig . replaceAll ( "[^0-9A-Za-z-]" , "_" ) ; } else { return UUID . randomUUID ( ) . toString ( ) ; } } | Returns a file name that is safe to use and does not have any invalid characters . |
39,521 | public static Set < String > getToplevelCorpusNames ( SaltProject p ) { Set < String > names = new HashSet < > ( ) ; if ( p != null && p . getCorpusGraphs ( ) != null ) { for ( SCorpusGraph g : p . getCorpusGraphs ( ) ) { if ( g . getRoots ( ) != null ) { for ( SNode c : g . getRoots ( ) ) { names . add ( c . getName (... | Gets all names of a corpus from a salt project . |
39,522 | public static < V > Map < SNode , V > createSNodeMapFromIDs ( Map < String , V > map , SDocumentGraph graph ) { HashMap < SNode , V > result = new LinkedHashMap < > ( ) ; if ( map != null && graph != null ) { for ( Map . Entry < String , V > e : map . entrySet ( ) ) { SNode n = graph . getNode ( e . getKey ( ) ) ; if (... | Takes a map of salt node IDs to a value and return a new map that uses the SNodes as keys instead of the IDs . |
39,523 | public static LinkedHashMap < String , ArrayList < Row > > parseSalt ( VisualizerInput input , boolean showSpanAnnos , boolean showTokenAnnos , List < String > annotationNames , Set < String > mediaLayer , boolean replaceValueWithMediaIcon , long startTokenIndex , long endTokenIndex , PDFController pdfController , STex... | Converts Salt document graph to rows . |
39,524 | public static Set < String > computeDisplayedNamespace ( VisualizerInput input , List < Class < ? extends SNode > > types ) { if ( input == null ) { return new HashSet < > ( ) ; } String showNamespaceConfig = input . getMappings ( ) . getProperty ( GridComponent . MAPPING_SHOW_NAMESPACE ) ; if ( showNamespaceConfig != ... | Returns the annotations to which should be displayed together with their namespace . |
39,525 | private static Set < String > getAnnotationLevelSet ( SDocumentGraph graph , String namespace , Class < ? extends SNode > type ) { Set < String > result = new TreeSet < > ( ) ; if ( graph != null ) { List < ? extends SNode > nodes ; if ( SSpan . class == type ) { nodes = graph . getSpans ( ) ; } else if ( SToken . clas... | Get the qualified name of all annotations belonging to spans having a specific namespace . |
39,526 | private static void sortEventsByTokenIndex ( Row row ) { Collections . sort ( row . getEvents ( ) , new Comparator < GridEvent > ( ) { public int compare ( GridEvent o1 , GridEvent o2 ) { if ( o1 == o2 ) { return 0 ; } if ( o1 == null ) { return - 1 ; } if ( o2 == null ) { return + 1 ; } return Integer . compare ( o1 .... | Sort events of a row . The sorting is depending on the left value of the event |
39,527 | private static void splitRowsOnIslands ( Row row , final SDocumentGraph graph , STextualDS text , long startTokenIndex , long endTokenIndex ) { BitSet tokenCoverage = new BitSet ( ) ; List < SToken > sortedTokenList = graph . getSortedTokenByText ( ) ; ListIterator < SToken > itToken = sortedTokenList . listIterator ( ... | Splits events of a row if they overlap an island . Islands are areas between the token which are included in the result . |
39,528 | private String getText ( SNode node , VisualizerInput input ) { SDocumentGraph sDocumentGraph = input . getSResult ( ) . getDocumentGraph ( ) ; List < DataSourceSequence > sequences = sDocumentGraph . getOverlappedDataSourceSequence ( node , SALT_TYPE . STEXT_OVERLAPPING_RELATION ) ; if ( sequences != null && sequences... | Get the text which is overlapped by the SNode . |
39,529 | private void addLoginButton ( ) { VaadinSession session = VaadinSession . getCurrent ( ) ; if ( session != null ) { boolean kickstarter = Helper . isKickstarter ( session ) ; if ( ! kickstarter ) { addComponent ( lblUserName ) ; setComponentAlignment ( lblUserName , Alignment . MIDDLE_RIGHT ) ; addComponent ( btLogin )... | Adds the login button + login text to the toolbar . This is only happened when the gui is not started via the kickstarter . |
39,530 | public void addAnnotationConditions ( Collection < String > conditions , int index , QueryAnnotation annotation , String table , TableAccessStrategy tas ) { TextMatching tm = annotation . getTextMatching ( ) ; String column = annotation . getNamespace ( ) == null ? "annotext" : "qannotext" ; Escaper escaper = tm != nul... | Adds annotation conditions for a single node . |
39,531 | public static FrequencyTableEntry parse ( String definition ) { List < String > splitted = Splitter . on ( ':' ) . trimResults ( ) . omitEmptyStrings ( ) . limit ( 2 ) . splitToList ( definition ) ; if ( splitted . size ( ) == 2 ) { FrequencyTableEntry entry = new FrequencyTableEntry ( ) ; if ( "meta" . equals ( splitt... | A constructor that takes the raw definition as argument . |
39,532 | private void updateAutoGeneratedQueriesPanel ( ) { Set < String > corpora = new HashSet < > ( ui . getQueryState ( ) . getSelectedCorpora ( ) . getValue ( ) ) ; if ( corpora . isEmpty ( ) ) { corpora . addAll ( ui . getQueryState ( ) . getAvailableCorpora ( ) . getItemIds ( ) ) ; } autoGenQueries . setSelectedCorpusInB... | Updates or initializes the panel which holds the automatic generated queries . |
39,533 | protected boolean existConflictingTopLevelCorpus ( String topLevelCorpusName ) { String sql = "SELECT count(name) as amount FROM corpus WHERE top_level=true AND name='" + topLevelCorpusName + "'" ; Integer numberOfCorpora = getJdbcTemplate ( ) . query ( sql , new ResultSetExtractor < Integer > ( ) { public Integer extr... | Checks if there already exists a top level corpus . |
39,534 | protected void closeAllConnections ( String databasename ) { String sql = "SELECT pg_terminate_backend(pg_stat_activity.pid)\n" + "FROM pg_stat_activity\n" + "WHERE pg_stat_activity.datname = ?\n" + " AND pid <> pg_backend_pid();" ; try ( Connection conn = getDataSource ( ) . getConnection ( ) ) { DatabaseMetaData met... | Closes all open idle connections . The current data source must have superuser rights . |
39,535 | private String getText ( SToken currNode ) { List < DataSourceSequence > sSequences = ( ( SDocumentGraph ) currNode . getGraph ( ) ) . getOverlappedDataSourceSequence ( currNode , SALT_TYPE . STEXT_OVERLAPPING_RELATION ) ; if ( sSequences == null || sSequences . size ( ) != 1 ) { log . error ( "rst supports only one te... | Gets the overlapping token as string from a node which are direct dominated by this node . |
39,536 | private String getHTMLColor ( SToken token ) { if ( ! markedAndCovered . containsKey ( token ) ) { return null ; } int color = ( int ) ( long ) markedAndCovered . get ( token ) ; color = Math . min ( color > 0 ? color - 1 : color , MatchedNodeColors . values ( ) . length - 1 ) ; return MatchedNodeColors . values ( ) [ ... | Checks if a specific token is marked as matching token and returns a HTML color string . |
39,537 | private boolean isSegment ( SNode currNode ) { List < SRelation < SNode , SNode > > edges = currNode . getGraph ( ) . getOutRelations ( currNode . getId ( ) ) ; if ( edges != null && edges . size ( ) > 0 ) { for ( SRelation < SNode , SNode > edge : edges ) { if ( edge . getTarget ( ) instanceof SToken ) { return true ;... | Checks if there exists an SRelation which targets a SToken . |
39,538 | private void sortChildren ( JSONObject root ) throws JSONException { JSONArray children = root . getJSONArray ( "children" ) ; List < JSONObject > childrenSorted = new ArrayList < JSONObject > ( children . length ( ) ) ; for ( int i = 0 ; i < children . length ( ) ; i ++ ) { childrenSorted . add ( children . getJSONObj... | Sorts the children of root by the the sentence indizes . Since the sentence indizes are based on the token indizes some sentences have no sentences indizes because sometimes token nodes are out of context . |
39,539 | public void shutdown ( ) { log . info ( "Shutting down..." ) ; isShutdownRequested = true ; try { mainThread . join ( ) ; } catch ( InterruptedException e ) { log . error ( "Interrupted which waiting on main daemon thread to complete." ) ; } } | shutdown the AnnisService - ensure that current work load finishes |
39,540 | public void start ( boolean rethrowExceptions ) throws Exception { log . info ( "Starting up REST..." ) ; try { createWebServer ( ) ; if ( server == null ) { isShutdownRequested = true ; errorCode = 100 ; } else { server . start ( ) ; } } catch ( Exception ex ) { log . error ( "could not start ANNIS REST service" , ex ... | Creates and starts the server |
39,541 | public void setTimeout ( int milliseconds ) { if ( ctx != null ) { QueryDao dao = ( QueryDao ) ctx . getBean ( "queryDao" ) ; if ( dao != null ) { dao . setTimeout ( milliseconds ) ; } } } | Set the timeout in milliseconds |
39,542 | public static Map < String , ZipEntry > corporaInZipfile ( ZipFile zip ) throws IOException { Map < String , ZipEntry > result = new HashMap < > ( ) ; for ( ZipEntry e : getANNISEntry ( zip , "corpus" ) ) { String name = extractToplevelCorpusNames ( zip . getInputStream ( e ) ) ; result . put ( name , e ) ; } return re... | List all corpora of a ZIP file and their paths . |
39,543 | public static String extractToplevelCorpusNames ( InputStream corpusTabContent ) { String result = null ; try ( CSVReader csv = new CSVReader ( new InputStreamReader ( corpusTabContent , "UTF-8" ) , '\t' ) ) { String [ ] line ; int maxPost = Integer . MIN_VALUE ; int minPre = Integer . MAX_VALUE ; while ( ( line = csv ... | Extract the name of the toplevel corpus from the content of the corpus . tab file . |
39,544 | public static List < ZipEntry > getANNISEntry ( ZipFile file , String table , String ... fileEndings ) { List < ZipEntry > allMatchingEntries = new ArrayList < > ( ) ; if ( fileEndings == null || fileEndings . length == 0 ) { fileEndings = new String [ ] { "tab" , "annis" } ; } final List < String > fullNames = new Lin... | Find the directories containing the real ANNIS tab files for a zip file . |
39,545 | private void join ( ParserRuleContext ctx , Class < ? extends Join > type ) { QueryNode left = relationChain . get ( relationIdx ) ; QueryNode right = relationChain . get ( relationIdx + 1 ) ; try { Constructor < ? extends Join > c = type . getConstructor ( QueryNode . class ) ; Join newJoin = c . newInstance ( right )... | Automatically create a join from a node and a join class . |
39,546 | private void analyzeTextTable ( String toplevelCorpusName ) { List < String > rawTexts = getQueryDao ( ) . getRawText ( toplevelCorpusName ) ; final Pattern WHITESPACE_MATCHER = Pattern . compile ( "^\\s+$" ) ; for ( String s : rawTexts ) { if ( s != null && WHITESPACE_MATCHER . matcher ( s ) . matches ( ) ) { if ( get... | Searches for textes which are empty or only contains whitespaces . If that is the case the visualizer and no document visualizer are defined in the corpus properties file a new file is created and stores a new config which disables document browsing . |
39,547 | public void init ( ) { AnnotationIntrospector introspector = new JaxbAnnotationIntrospector ( ) ; jsonMapper . setAnnotationIntrospector ( introspector ) ; jsonMapper . configure ( SerializationConfig . Feature . INDENT_OUTPUT , false ) ; } | Called when Spring configuration finished |
39,548 | @ Transactional ( readOnly = true , propagation = Propagation . REQUIRED ) public String getDatabaseSchemaVersion ( ) { try { List < Map < String , Object > > result = getJdbcTemplate ( ) . queryForList ( "SELECT \"value\" FROM repository_metadata WHERE \"name\"='schema-version'" ) ; String schema = result . size ( ) >... | Get the real schema name and version as used by the database . |
39,549 | @ Transactional ( readOnly = false , propagation = Propagation . REQUIRES_NEW , isolation = Isolation . READ_COMMITTED ) public boolean importCorpus ( String path , String aliasName , boolean overwrite , boolean waitForOtherTasks ) { checkDatabaseSchemaVersion ( ) ; if ( ! lockRepositoryMetadataTable ( waitForOtherTask... | Reads ANNIS files from several directories . |
39,550 | private void importSingleFile ( String file , String toplevelCorpusName , long corpusRef ) { BinaryImportHelper preStat = new BinaryImportHelper ( file , getRealDataDir ( ) , toplevelCorpusName , corpusRef , mimeTypeMapping ) ; getJdbcTemplate ( ) . execute ( BinaryImportHelper . SQL , preStat ) ; } | Imports a single binary file . |
39,551 | @ Transactional ( readOnly = true ) public void cleanupData ( ) { List < String > allFilesInDatabaseList = getJdbcTemplate ( ) . queryForList ( "SELECT filename FROM media_files AS m" , String . class ) ; File dataDir = getRealDataDir ( ) ; Set < File > allFilesInDatabase = new HashSet < > ( ) ; for ( String singleFile... | Delete files not used by this instance in the data directory . |
39,552 | public List < Map < String , Object > > listCorpusStats ( File databaseProperties ) { List < Map < String , Object > > result = new LinkedList < > ( ) ; DataSource origDataSource = getDataSource ( ) . getInnerDataSource ( ) ; try { if ( databaseProperties != null ) { getDataSource ( ) . setInnerDataSource ( createDataS... | Lists the corpora using the connection information of a given database . properties . file |
39,553 | public Multimap < String , String > listCorpusAlias ( File databaseProperties ) { Multimap < String , String > result = TreeMultimap . create ( ) ; DataSource origDataSource = getDataSource ( ) . getInnerDataSource ( ) ; try { if ( databaseProperties != null ) { getDataSource ( ) . setInnerDataSource ( createDataSource... | Provides a list where the keys are the aliases and the values are the corpus names . |
39,554 | private void bulkloadTableFromResource ( String table , Resource resource ) { log . debug ( "bulk-loading data from '" + resource . getFilename ( ) + "' into table '" + table + "'" ) ; String sql = "COPY \"" + table + "\" FROM STDIN WITH DELIMITER E'\t' NULL AS 'NULL'" ; try { Connection originalCon = DataSourceUtils .... | bulk - loads a table from a resource |
39,555 | private List < String > listIndexesOnTables ( List < String > tables ) { String sql = "" + "SELECT indexname " + "FROM pg_indexes " + "WHERE tablename IN (" + StringUtils . repeat ( "?" , "," , tables . size ( ) ) + ") " + "AND lower(indexname) NOT IN " + " (SELECT lower(conname) FROM pg_constraint WHERE contype in ('p... | exploits the fact that the index has the same name as the constraint |
39,556 | private String getTopLevelCorpusFromTmpArea ( ) { String sql = "SELECT name FROM " + tableInStagingArea ( "corpus" ) + " WHERE type='CORPUS'\n" + "AND pre = (SELECT min(pre) FROM " + tableInStagingArea ( "corpus" ) + ")\n" + "AND post = (SELECT max(post) FROM " + tableInStagingArea ( "corpus" ) + ")" ; return getJdbcTe... | Retrieves the name of the top level corpus in the corpus . tab file . |
39,557 | private void importResolverVisMapTable ( String path , String table , String annisFileSuffix ) { try { File resolver_vis_tab = new File ( path , table + annisFileSuffix ) ; if ( ! resolver_vis_tab . isFile ( ) ) { return ; } String firstLine ; try ( BufferedReader bReader = new BufferedReader ( new InputStreamReader ( ... | Imported the old and the new version of the resolver_vis_map . tab . The new version has an additional column for visibility status of the visualization . |
39,558 | private void fixResolverVisMapTable ( String toplevelCorpus , String table ) { log . info ( "checking resolver_vis_map for errors" ) ; int invalidRows = getJdbcTemplate ( ) . update ( "DELETE FROM " + table + " WHERE corpus <> ?" , toplevelCorpus ) ; if ( invalidRows > 0 ) { log . warn ( "there were " + invalidRows + "... | Removes any unwanted entries from the resolver_vis_map table |
39,559 | private void analyzeAutoGeneratedQueries ( long corpusID ) { List < ExampleQuery > exampleQueries = getJdbcTemplate ( ) . query ( "SELECT * FROM _" + EXAMPLE_QUERIES_TAB , new RowMapper < ExampleQuery > ( ) { public ExampleQuery mapRow ( ResultSet rs , int i ) throws SQLException { ExampleQuery eQ = new ExampleQuery ( ... | Counts nodes and operators of the AQL example query and writes it back to the staging area . |
39,560 | private void countExampleQueryNodes ( List < ExampleQuery > exampleQueries ) { for ( ExampleQuery eQ : exampleQueries ) { QueryData query = getQueryDao ( ) . parseAQL ( eQ . getExampleQuery ( ) , null ) ; int count = 0 ; for ( List < QueryNode > qNodes : query . getAlternatives ( ) ) { count += qNodes . size ( ) ; } eQ... | Maps example queries to integer which represents the amount of nodes of the aql query . |
39,561 | private void writeAmountOfNodesBack ( List < ExampleQuery > exampleQueries ) { String sqlTemplate = "UPDATE _" + EXAMPLE_QUERIES_TAB + " SET nodes=?, used_ops=CAST(? AS text[]) WHERE example_query=?;" ; for ( ExampleQuery eQ : exampleQueries ) { getJdbcTemplate ( ) . update ( sqlTemplate , eQ . getNodes ( ) , eQ . getU... | Writes the counted nodes and the used operators back to the staging area . |
39,562 | private void checkTopLevelCorpus ( ) throws ConflictingCorpusException { String corpusName = getTopLevelCorpusFromTmpArea ( ) ; if ( existConflictingTopLevelCorpus ( corpusName ) ) { String msg = "There already exists a top level corpus with the name: " + corpusName ; throw new ConflictingCorpusException ( msg ) ; } } | Checks if a already exists a corpus with the same name of the top level corpus in the corpus . tab file . If this is the case an Exception is thrown and the import is aborted . |
39,563 | public void doClearExampleQueries ( String unused ) { for ( Long corpusId : corpusList ) { System . out . println ( "delete example queries for " + corpusId ) ; queriesGenerator . delExampleQueries ( corpusId ) ; } } | Clears all example queries . |
39,564 | public void doGenerateExampleQueries ( String args ) { Boolean del = false ; if ( args != null && "overwrite" . equals ( args ) ) { del = true ; } if ( corpusList != null ) { for ( Long corpusId : corpusList ) { System . out . println ( "generate example queries " + corpusId ) ; queriesGenerator . generateQueries ( cor... | Enables the auto generating of example queries for the annis shell . |
39,565 | private QueryData analyzeQuery ( String annisQuery , String queryFunction ) { QueryData queryData ; log . debug ( "analyze query for " + queryFunction + " function" ) ; if ( queryFunction != null && ! queryFunction . matches ( "(sql_)?subgraph" ) ) { queryData = queryDao . parseAQL ( annisQuery , corpusList ) ; } else ... | Does the setup for the QueryData object . |
39,566 | public static String calculateSHAHash ( String s ) throws NoSuchAlgorithmException , UnsupportedEncodingException { MessageDigest md = MessageDigest . getInstance ( "SHA-256" ) ; md . update ( s . getBytes ( "UTF-8" ) ) ; byte [ ] digest = md . digest ( ) ; StringBuilder hashVal = new StringBuilder ( ) ; for ( byte b :... | Hashes a string using SHA - 256 . |
39,567 | public String setHighlightingColor ( SNode node ) { String color = null ; SFeature featMatched = node . getFeature ( ANNIS_NS , FEAT_MATCHEDNODE ) ; Long matchRaw = featMatched == null ? null : featMatched . getValue_SNUMERIC ( ) ; if ( matchRaw != null ) { color = MatchedNodeColors . getHTMLColorByMatch ( matchRaw ) ;... | Implements the getHighlightingColor method of the org . corpus_tools . salt . util . StyleImporter interface . |
39,568 | public void injectUniqueCSS ( String cssContent , String wrapperClass ) { if ( alreadyAddedCSS == null ) { alreadyAddedCSS = new TreeSet < String > ( ) ; } if ( wrapperClass != null ) { cssContent = wrapCSS ( cssContent , wrapperClass ) ; } String hashForCssContent = Hashing . md5 ( ) . hashString ( cssContent , Charse... | Inject CSS into the UI . This function will not add multiple style - elements if the exact CSS string was already added . |
39,569 | @ Path ( "search/frequency" ) @ Produces ( "application/xml" ) public FrequencyTable frequency ( @ QueryParam ( "q" ) String query , @ QueryParam ( "corpora" ) String rawCorpusNames , @ QueryParam ( "fields" ) String rawFields ) { requiredParameter ( query , "q" , "AnnisQL query" ) ; requiredParameter ( rawCorpusNames ... | Frequency analysis . |
39,570 | @ Produces ( "text/plain" ) @ Path ( "check" ) public String check ( @ QueryParam ( "q" ) String query , @ DefaultValue ( "" ) @ QueryParam ( "corpora" ) String rawCorpusNames ) { Subject user = SecurityUtils . getSubject ( ) ; List < String > corpusNames = splitCorpusNamesFromRaw ( rawCorpusNames ) ; for ( String c : ... | Return true if this is a valid query or throw exception when invalid |
39,571 | @ Path ( "parse/nodes" ) @ Produces ( "application/xml" ) public Response parseNodes ( @ QueryParam ( "q" ) String query , @ DefaultValue ( "" ) @ QueryParam ( "corpora" ) String rawCorpusNames ) { Subject user = SecurityUtils . getSubject ( ) ; List < String > corpusNames = splitCorpusNamesFromRaw ( rawCorpusNames ) ;... | Return the list of the query nodes if this is a valid query or throw exception when invalid |
39,572 | @ Path ( "corpora/example-queries/" ) @ Produces ( MediaType . APPLICATION_XML ) public List < ExampleQuery > getExampleQueries ( @ QueryParam ( "corpora" ) String rawCorpusNames ) throws WebApplicationException { Subject user = SecurityUtils . getSubject ( ) ; try { String [ ] corpusNames ; if ( rawCorpusNames != null... | Fetches the example queries for a specific corpus . |
39,573 | private void requiredParameter ( String value , String name , String description ) throws WebApplicationException { if ( value == null ) { throw new WebApplicationException ( Response . status ( Response . Status . BAD_REQUEST ) . type ( MediaType . TEXT_PLAIN ) . entity ( "missing required parameter '" + name + "' (" ... | Throw an exception if the parameter is missing . |
39,574 | private List < String > splitCorpusNamesFromRaw ( String rawCorpusNames ) { return new ArrayList < > ( Splitter . on ( "," ) . omitEmptyStrings ( ) . trimResults ( ) . splitToList ( rawCorpusNames ) ) ; } | Splits a list of corpus names into a proper java list . |
39,575 | private int getCorpusConfigIntValues ( String context ) { int value = Integer . parseInt ( defaultCorpusConfig . getConfig ( ) . getProperty ( context ) ) ; if ( value < 0 ) { throw new IllegalStateException ( "the value must be > 0" ) ; } return value ; } | Extract corpus configurations values with numeric values . |
39,576 | @ Path ( "rawtext/{top}/{docname}" ) @ Produces ( MediaType . APPLICATION_XML ) public RawTextWrapper getRawText ( @ PathParam ( "top" ) String top , @ PathParam ( "docname" ) String docname ) { Subject user = SecurityUtils . getSubject ( ) ; user . checkPermission ( "query:raw_text:" + top ) ; RawTextWrapper result = ... | Fetches the raw text from the text . tab file . |
39,577 | private Map < Integer , List < Annotation > > splitListAnnotations ( ) { List < Annotation > metadata = Helper . getMetaData ( toplevelCorpusName , documentName ) ; Map < Integer , List < Annotation > > hashMetaData = new HashMap < > ( ) ; if ( metadata != null && ! metadata . isEmpty ( ) ) { if ( documentName != null ... | Returns empty map if no metadata are available . |
39,578 | private void addEmptyLabel ( ) { if ( emptyLabel == null ) { emptyLabel = new Label ( "none" ) ; } if ( corpusAnnotationTable != null ) { layout . removeComponent ( corpusAnnotationTable ) ; } layout . addComponent ( emptyLabel ) ; emptyLabel . setSizeUndefined ( ) ; layout . setComponentAlignment ( emptyLabel , Alignm... | Places a label in the middle center of the corpus browser panel . |
39,579 | void setDocNames ( List < Annotation > docs ) { container = new IndexedContainer ( ) ; container . addContainerProperty ( PROP_DOC_NAME , String . class , "n/a" ) ; MetaColumns metaCols = generateMetaColumns ( ) ; for ( MetaDataCol metaDatum : metaCols . visibleColumns ) { container . addContainerProperty ( metaDatum .... | Updates the table with docnames and generate the additional columns defined by the user . |
39,580 | private void sortByMetaData ( List < MetaDataCol > sortColumns ) { if ( sortColumns == null || sortColumns . isEmpty ( ) ) { sort ( new Object [ ] { PROP_DOC_NAME } , new boolean [ ] { true } ) ; return ; } Object [ ] sortByColumns = new Object [ sortColumns . size ( ) ] ; boolean [ ] ascendingOrDescending = new boolea... | Sort the table by a given config . The config includes metadata keys and the table is sorted lexicographically by their values . If not config for sorting is determined the document name is used for sorting . |
39,581 | private List < Annotation > getDocMetaData ( String document ) { if ( ! docMetaDataCache . containsKey ( docBrowserPanel . getCorpus ( ) ) ) { WebResource res = Helper . getAnnisWebResource ( ) ; res = res . path ( "meta/corpus/" ) . path ( urlPathEscape . escape ( docBrowserPanel . getCorpus ( ) ) ) . path ( "closure"... | Retrieves date from the cache or from the annis rest service for a specific document . |
39,582 | public boolean addEvent ( GridEvent e ) { BitSet eventOccupance = new BitSet ( e . getRight ( ) ) ; eventOccupance . set ( e . getLeft ( ) , e . getRight ( ) + 1 , true ) ; if ( occupancySet . intersects ( eventOccupance ) ) { return false ; } occupancySet . or ( eventOccupance ) ; events . add ( e ) ; if ( e . getText... | Adds an event to this row |
39,583 | public void updateFragment ( DisplayedResultQuery q ) { List < String > args = Helper . citationFragment ( q . getQuery ( ) , q . getCorpora ( ) , q . getLeftContext ( ) , q . getRightContext ( ) , q . getSegmentation ( ) , q . getBaseText ( ) , q . getOffset ( ) , q . getLimit ( ) , q . getOrder ( ) , q . getSelectedM... | Updates the browser address bar with the current query parameters and the query itself . |
39,584 | public void updateFragementWithSelectedCorpus ( Set < String > corpora ) { if ( corpora != null && ! corpora . isEmpty ( ) ) { String fragment = "_c=" + Helper . encodeBase64URL ( StringUtils . join ( corpora , "," ) ) ; UI . getCurrent ( ) . getPage ( ) . setUriFragment ( fragment ) ; } else { UI . getCurrent ( ) . ge... | Adds the _c fragement to the URL in the browser adress bar when a corpus is selected . |
39,585 | public void reset ( ) { try { if ( rs . getType ( ) == ResultSet . TYPE_FORWARD_ONLY ) { throw new UnsupportedOperationException ( "Can not reset iterator for a ResultSet that is of type \"forward only\"" ) ; } hasNext = rs . first ( ) ; } catch ( SQLException ex ) { log . error ( null , ex ) ; } } | Returns to the beginning of the iteration . |
39,586 | public FrequencyTableEntry toFrequencyTableEntry ( ) { FrequencyTableEntry result = new FrequencyTableEntry ( ) ; result . setReferencedNode ( nr ) ; if ( annotation != null && "tok" . equals ( annotation ) ) { result . setType ( FrequencyTableEntryType . span ) ; } else { result . setType ( FrequencyTableEntryType . a... | Converts this object to a proper definition . |
39,587 | public static Response map ( SQLException sqlEx ) { if ( null != sqlEx . getSQLState ( ) ) { switch ( sqlEx . getSQLState ( ) ) { case "57014" : return Response . status ( 504 ) . entity ( sqlEx . getMessage ( ) ) . build ( ) ; case "2201B" : AqlParseError error = new AqlParseError ( sqlEx . getMessage ( ) ) ; return R... | Maps an exception to a response or returns null if it wasn t handled |
39,588 | private void convertSaltProject ( SaltProject p , List < String > annoKeys , Map < String , String > args , boolean alignmc , int offset , Map < String , CorpusConfig > corpusConfigs , Writer out , Integer nodeCount ) throws IOException , IllegalArgumentException { int recordNumber = offset ; if ( p != null && p . getC... | invokes the createAdjacencyMatrix method if nodeCount ! = null or outputText otherwise |
39,589 | public void reportServiceException ( UniformInterfaceException ex , boolean showNotification ) { QueryPanel qp = searchView . getControlPanel ( ) . getQueryPanel ( ) ; String caption = null ; String description = null ; if ( ! AnnisBaseUI . handleCommonError ( ex , "execute query" ) ) { switch ( ex . getResponse ( ) . ... | Show errors that occured during the execution of a query to the user . |
39,590 | private static < T > void setIfNew ( Property < T > prop , T newValue ) { if ( ! Objects . equals ( prop . getValue ( ) , newValue ) ) { prop . setValue ( newValue ) ; } } | Only changes the value of the property if it is not equals to the old one . |
39,591 | public ExportQuery getExportQuery ( ) { return QueryGenerator . export ( ) . query ( state . getAql ( ) . getValue ( ) ) . corpora ( state . getSelectedCorpora ( ) . getValue ( ) ) . left ( state . getLeftContext ( ) . getValue ( ) ) . right ( state . getRightContext ( ) . getValue ( ) ) . segmentation ( state . getVis... | Get the current query as it is defined by the UI controls . |
39,592 | private void cancelSearch ( ) { searchView . getControlPanel ( ) . getQueryPanel ( ) . setCountIndicatorEnabled ( false ) ; Map < QueryUIState . QueryType , Future < ? > > exec = state . getExecutedTasks ( ) ; if ( exec . containsKey ( QueryUIState . QueryType . COUNT ) && ! exec . get ( QueryUIState . QueryType . COUN... | Cancel queries from the client side . |
39,593 | public void addHistoryEntry ( Query q ) { try { Query queryCopy = q . clone ( ) ; state . getHistory ( ) . removeItem ( queryCopy ) ; state . getHistory ( ) . addItemAt ( 0 , queryCopy ) ; searchView . getControlPanel ( ) . getQueryPanel ( ) . updateShortHistory ( ) ; } catch ( CloneNotSupportedException ex ) { log . e... | Adds a history entry to the history panel . |
39,594 | private void setReferent ( SNode n , long index , int value ) { if ( n instanceof SToken ) { SToken tok = ( SToken ) n ; if ( ! referentOfToken . containsKey ( tok . getId ( ) ) ) { HashMap < Long , Integer > newlist = new HashMap < Long , Integer > ( ) ; newlist . put ( index , value ) ; referentOfToken . put ( tok . ... | adds a Referent for all Nodes dominated or covered by outgoing Edges of AnnisNode a |
39,595 | private List < String > searchTokens ( SNode n , long cnr ) { List < String > result = new LinkedList < String > ( ) ; if ( n instanceof SToken ) { result . add ( n . getId ( ) ) ; if ( componentOfToken . get ( n . getId ( ) ) == null ) { List < Long > newlist = new LinkedList < Long > ( ) ; newlist . add ( cnr ) ; com... | Collects all Token dominated or covered by all outgoing Edges of AnnisNode a |
39,596 | private String getAnnotations ( String id , long component ) { String result = "" ; String incoming = "" , outgoing = "" ; int nri = 1 , nro = 1 ; if ( referentOfToken . get ( id ) != null ) { for ( long l : referentOfToken . get ( id ) . keySet ( ) ) { if ( referentList . get ( ( int ) l ) != null && referentList . ge... | Collects fitting annotations of an Token |
39,597 | private boolean connectionOf ( String pre , String now , long currentComponent ) { List < Long > prel = new LinkedList < Long > ( ) , nowl = new LinkedList < Long > ( ) ; if ( ! pre . equals ( now ) && referentOfToken . get ( pre ) != null && referentOfToken . get ( now ) != null ) { for ( long l : referentOfToken . ge... | Calculates wheather a line determinded by its component should be discontinous |
39,598 | private int getNewColor ( int i ) { int r = ( ( ( i ) * 224 ) % 255 ) ; int g = ( ( ( i + 197 ) * 1034345 ) % 255 ) ; int b = ( ( ( i + 23 ) * 74353 ) % 255 ) ; if ( ( ( r + b + g ) / 3 ) < 100 ) { r = 255 - r ; g = 255 - g ; b = 255 - b ; } else if ( ( ( r + b + g ) / 3 ) > 192 ) { r = 1 * ( r / 2 ) ; g = 1 * ( g / 2 ... | Returns a unique color - value for a given number |
39,599 | @ Produces ( value = "text/plain" ) public String addNewID ( String str ) { Subject user = SecurityUtils . getSubject ( ) ; String remoteIP = request . getRemoteAddr ( ) . replaceAll ( "[.:]" , "_" ) ; user . checkPermission ( "shortener:create:" + remoteIP ) ; return shortenerDao . shorten ( str , "" + user . getPrinc... | Takes a URI and returns an ID . |
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