Species
stringclasses
2 values
eccDNA type
stringclasses
4 values
eccDNA ID
stringlengths
9
14
Genome version
stringclasses
2 values
Location
stringlengths
13
25
Chr
stringclasses
25 values
Start
float64
1
249M
End
float64
1.47k
249M
Health/Disease
stringclasses
2 values
Tissue/Cell line
stringlengths
3
56
Disease Name
stringlengths
7
51
Experiment/Prediction
stringclasses
2 values
Validation Strategies
stringlengths
3
141
Treatment
stringclasses
11 values
Oncogene
stringlengths
2
237
Source
stringlengths
13
295
Library type
stringclasses
9 values
Pubmed ID
stringlengths
7
13
Public Date
stringclasses
25 values
Function/Characteristic of ecDNA
stringlengths
13
494
Remarks
stringlengths
2
2.89k
Homo sapiens
ecDNA
ec_hsa_01
hg19
chr1:148175322-148195932
chr1
148,175,322
148,195,932
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:33019431-33040041,chr7:54365673-56353955,chr7:75217045-75699936.
Homo sapiens
ecDNA
ec_hsa_02
hg19
chr1:148175386-148295895
chr1
148,175,386
148,295,895
Disease
Brain
Glioblastoma
Prediction
AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr7:54175400-55741898.
Homo sapiens
ecDNA
ec_hsa_03
hg19
chr1:153280226-185860842
chr1
153,280,226
185,860,842
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
ABL2,ARHGEF2,CKS1B,DUSP12,ETV3,FAM189B,FDPS,HAX1,INTS3,MUC1,NTRK1,PBX1,RIT1,S100A4,S100A7,S100A8,XCL1,YY1AP1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_04
hg19
chr1:154210485-154211045
chr1
154,210,485
154,211,045
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:98554714-98555274,chr7:53437686-57065330,chr7:57477300-57497860,chr7:65160992-65361551,chrX:107240015-107240575.
Homo sapiens
ecDNA
ec_hsa_05
hg19
chr1:203177968-204957662
chr1
203,177,968
204,957,662
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
MDM4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6382);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:54345291-55107618,chr4:55629356-55629856,chr6:100688972-100689472,chrX:11692808-11693308,chrX:30639531-30640031.
Homo sapiens
ecDNA
ec_hsa_06
hg19
chr1:203360625-204898652
chr1
203,360,625
204,898,652
Disease
Brain
Glioblastoma
Prediction
AmpliconArchitect
Not Available
MDM4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chrX:11692735-11693266
Homo sapiens
ecDNA
ec_hsa_07
hg19
chr1:209751070-222324873
chr1
209,751,070
222,324,873
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
ATF3,INTS7
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_08
hg19
chr1:224238062-224822794
chr1
224,238,062
224,822,794
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
Homo sapiens
ecDNA
ec_hsa_09
hg19
chr1:238182639-238183163
chr1
238,182,639
238,183,163
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390.
Homo sapiens
ecDNA
ec_hsa_10
hg19
chr1:78748084-78748614
chr1
78,748,084
78,748,614
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:111174084-111384613,chr8:127137778-131068628,chr11:93361756-93362286,chrX:116866132-116866662.
Homo sapiens
ecDNA
ec_hsa_11
hg19
chr1:78748090-78748614
chr1
78,748,090
78,748,614
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr11:93361763-93362287,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390.
Homo sapiens
ecDNA
ec_hsa_12
hg19
chr1:78748126-78748609
chr1
78,748,126
78,748,609
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:111174081-111384563,chr8:127493240-131068628,chr11:93361795-93362278,chr20:54188605-54189088,chrX:23578881-23579364.
Homo sapiens
ecDNA
ec_hsa_13
hg19
chr10:22460044-29188375
chr10
22,460,044
29,188,375
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
BMI1,RAB18
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Pathology:Astrocytoma
Homo sapiens
ecDNA
ec_hsa_14
hg19
chr10:484053-31076181
chr10
484,053
31,076,181
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
BMI1,CAMK1D,KLF6,MAP3K8,NET1,RAB18,VIM
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Pathology:Oligodendroglioma
Homo sapiens
ecDNA
ec_hsa_15
hg19
chr11:25517143-121336618
chr11
25,517,143
121,336,618
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
BCL9L,BIRC2,BIRC3,CBL,CCND1,CRYAB,CTTN,DDB2,DDX6,FGF3,FGF4,FOSL1,GAB2,INPPL1,INTS4,INTS5,KDM2A,KMT2A,LMO2,MACROD1,MALAT1,MAML2,MMP12,NEAT1,PAK1,RBM14,RSF1,SLC3A2,SPI1,TRAF6,TREH,WT1,YAP1,ZBTB16
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_16
hg19
chr11:26795187-43284531
chr11
26,795,187
43,284,531
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
LMO2,TRAF6,WT1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Pathology:Oligoastrocytoma
Homo sapiens
ecDNA
ec_hsa_17
hg19
chr11:77902914-119760408
chr11
77,902,914
119,760,408
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
BCL9L,BIRC2,BIRC3,CBL,CRYAB,DDX6,GAB2,KMT2A,MAML2,MMP12,TREH,YAP1,ZBTB16
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_18
hg19
chr11:9113266-102459139
chr11
9,113,266
102,459,139
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
BIRC2,BIRC3,CCND1,CTTN,DDB2,FGF3,FGF4,FOSL1,GAB2,INPPL1,INTS4,INTS5,KDM2A,LMO2,MACROD1,MALAT1,MAML2,NEAT1,PAK1,RBM14,RRAS2,RSF1,SLC3A2,SPI1,SWAP70,TRAF6,WT1,YAP1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_19
hg19
chr11:93361756-93362286
chr11
93,361,756
93,362,286
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748084-78748614,chr3:111174084-111384613,chr8:127137778-131068628,chrX:116866132-116866662.
Homo sapiens
ecDNA
ec_hsa_20
hg19
chr11:93361763-93362287
chr11
93,361,763
93,362,287
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748090-78748614,chr1:238182639-238183163,chr3:111174081-111384604,chr7:40425979-55700004,chr7:63668115-65540917,chr8:127493240-131484371,chr20:54188564-54189088,chrX:7505820-7506344,chrX:17239607-17240131,chrX:23578849-23579373,chrX:72338778-72339302,chrX:73257213-73257737,chrX:131541642-131542166,chrY:2844748-2845272,chrY:15291171-15291695,chrY:16497866-16498390.
Homo sapiens
ecDNA
ec_hsa_21
hg19
chr11:93361795-93362278
chr11
93,361,795
93,362,278
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:78748126-78748609,chr3:111174081-111384563,chr8:127493240-131068628,chr20:54188605-54189088,chrX:23578881-23579364.
Homo sapiens
ecDNA
ec_hsa_22
hg19
chr11:93361810-93362282
chr11
93,361,810
93,362,282
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr8:127493240-131068628
Homo sapiens
ecDNA
ec_hsa_23
hg19
chr12:114042493-114782434
chr12
114,042,493
114,782,434
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:50368739-51209733,chr12:51670201-52642673,
Homo sapiens
ecDNA
ec_hsa_24
hg19
chr12:22946040-58416791
chr12
22,946,040
58,416,791
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
AGAP2,ANP32D,ATF1,CDK4,DCD,DDIT3,ERBB3,ESPL1,GLI1,HNRNPA1,HOTAIR,KRAS,LETMD1,PA2G4,TFCP2,WNT1,WNT10B
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_25
hg19
chr12:2937590-132446960
chr12
2,937,590
132,446,960
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
AGAP2,ANP32D,ASCL1,ATF1,CDK4,CDKN1B,DCD,DDIT3,ELK3,EPS8,ERBB3,ESPL1,ETV6,FGF6,FOXM1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,KRAS,KSR2,LDHB,LETMD1,LMO3,MDM2,MSI1,NANOG,OLR1,PA2G4,PIWIL1,PTPN11,SART3,STYK1,SYT1,TBC1D15,TBX3,TFCP2,WNT1,WNT10B,YEATS4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Pathology:GBM
Homo sapiens
ecDNA
ec_hsa_26
hg19
chr12:30529733-30530238
chr12
30,529,733
30,530,238
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
Homo sapiens
ecDNA
ec_hsa_27
hg19
chr12:30529734-30530238
chr12
30,529,734
30,530,238
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
Homo sapiens
ecDNA
ec_hsa_28
hg19
chr12:30529764-30530238
chr12
30,529,764
30,530,238
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
Homo sapiens
ecDNA
ec_hsa_29
hg19
chr12:30529773-30530238
chr12
30,529,773
30,530,238
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
Homo sapiens
ecDNA
ec_hsa_30
hg19
chr12:3573149-53227596
chr12
3,573,149
53,227,596
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
ANP32D,ATF1,CDKN1B,EPS8,ETV6,FGF6,KRAS,LDHB,LETMD1,LMO3,NANOG,OLR1,STYK1,TFCP2,WNT1,WNT10B
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Pathology:GBM
Homo sapiens
ecDNA
ec_hsa_31
hg19
chr12:4282258-4876809
chr12
4,282,258
4,876,809
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
FGF6
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr2:39328-6675962,chr2:7006555-8947620,chr2:9115317-9396958,chr2:12471634-12820977,chr2:14740024-21892972,chr2:22803129-23710448,chr12:9743798-9778217.
Homo sapiens
ecDNA
ec_hsa_32
hg19
chr12:49333985-84231085
chr12
49,333,985
84,231,085
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
AGAP2,ATF1,CDK4,DCD,DDIT3,ERBB3,ESPL1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,LETMD1,MDM2,PA2G4,SYT1,TBC1D15,TFCP2,WNT1,WNT10B,YEATS4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_33
hg19
chr12:50194461-99767466
chr12
50,194,461
99,767,466
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
AGAP2,ATF1,CDK4,DCD,DDIT3,ELK3,ERBB3,ESPL1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,LETMD1,MDM2,PA2G4,SYT1,TBC1D15,TFCP2,YEATS4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Pathology:GBM
Homo sapiens
ecDNA
ec_hsa_34
hg19
chr12:50368739-51209733
chr12
50,368,739
51,209,733
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
ATF1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:51670201-52642673,chr12:114042493-114782434.
Homo sapiens
ecDNA
ec_hsa_35
hg19
chr12:50449904-70629864
chr12
50,449,904
70,629,864
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
AGAP2,ATF1,CDK4,DCD,DDIT3,ERBB3,ESPL1,GLI1,HMGA2,HNRNPA1,HOTAIR,IFNG,LETMD1,MDM2,PA2G4,TFCP2,YEATS4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_36
hg19
chr12:51670201-52642673
chr12
51,670,201
52,642,673
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:50368739-51209733,chr12:114042493-114782434.
Homo sapiens
ecDNA
ec_hsa_37
hg19
chr12:56837603-76223049
chr12
56,837,603
76,223,049
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1,HMGA2,IFNG,MDM2,TBC1D15,YEATS4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_38
hg19
chr12:57209160-58725448
chr12
57,209,160
58,725,448
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_39
hg19
chr12:57399247-58562513
chr12
57,399,247
58,562,513
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716269-11716767,chr3:111174081-111274578,chr5:57853485-57853983,chr7:54793202-55548745,chr8:127398869-132765370,chr8:135119160-136243156,chrX:154748217-154748715.
Homo sapiens
ecDNA
ec_hsa_40
hg19
chr12:57409417-58562513
chr12
57,409,417
58,562,513
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716264-11716766,chr7:54649106-55477598,chr12:70496679-70497181.
Homo sapiens
ecDNA
ec_hsa_41
hg19
chr12:57496686-58315685
chr12
57,496,686
58,315,685
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716232-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr15:50377640-50378173.
Homo sapiens
ecDNA
ec_hsa_42
hg19
chr12:57496689-58315685
chr12
57,496,689
58,315,685
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716211-11716729,chr7:54729139-55479139,chr8:127442805-132833866,chr8:135105698-135663156.
Homo sapiens
ecDNA
ec_hsa_43
hg19
chr12:57496694-58315685
chr12
57,496,694
58,315,685
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716236-11716766,chr7:54796492-55548745,chr8:127442805-133327046,chr12:57496694-58315685,chr15:50377642-50378172.
Homo sapiens
ecDNA
ec_hsa_44
hg19
chr12:57496714-58315685
chr12
57,496,714
58,315,685
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716256-11716765,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr15:50377651-50398160.
Homo sapiens
ecDNA
ec_hsa_45
hg19
chr12:57496724-58315685
chr12
57,496,724
58,315,685
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716263-11716767,chr7:54786492-55477598,chr8:127442805-132832068,chr8:135105698-135663156,chr15:50377663-50378167.
Homo sapiens
ecDNA
ec_hsa_46
hg19
chr12:57502937-58562513
chr12
57,502,937
58,562,513
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,chr12:70496679-70497179.
Homo sapiens
ecDNA
ec_hsa_47
hg19
chr12:57503737-58357571
chr12
57,503,737
58,357,571
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716283-11716766,chr7:54809106-55477598,chr8:127210847-133305515,chr8:135082366-135082849,chr8:135105698-135699519.
Homo sapiens
ecDNA
ec_hsa_48
hg19
chr12:57503752-58562513
chr12
57,503,752
58,562,513
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716277-11716767,chr3:111174081-111274570,chr5:57853493-57853983,chr7:54809106-55477598,chr8:105882036-105882526,chr8:127399968-132519689,chr8:135119160-136243156chr21:23357595-23358085,chrX:116866170-116866660.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716261-11716764,chr3:111174081-111274583,chr7:54793202-55548745,chr8:126238838-132308654,chr8:135119160-136243156.
Homo sapiens
ecDNA
ec_hsa_49
hg19
chr12:57527651-58285794
chr12
57,527,651
58,285,794
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_50
hg19
chr12:57699728-64487930
chr12
57,699,728
64,487,930
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
Pathology:Recurent Glioblastoma
Homo sapiens
ecDNA
ec_hsa_51
hg19
chr12:57795337-72184414
chr12
57,795,337
72,184,414
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer
Not Available
AGAP2,CDK4,DDIT3,GLI1,HMGA2,IFNG,MDM2,YEATS4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
Not Available
Homo sapiens
ecDNA
ec_hsa_52
hg19
chr12:57802773-58628188
chr12
57,802,773
58,628,188
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr12:59234812-60099303,chr12:61166617-61688013,chr12:64090187-64424120
Homo sapiens
ecDNA
ec_hsa_53
hg19
chr12:57802773-58628883
chr12
57,802,773
58,628,883
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:59233812-60099303,chr12:61166630-61688013,chr12:64090187-64424120
Homo sapiens
ecDNA
ec_hsa_54
hg19
chr12:57817510-58780431
chr12
57,817,510
58,780,431
Disease
Brain
Glioblastoma
Prediction
AmpliconArchitect
Not Available
AGAP2,CDK4,DDIT3,GLI1
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr12:92833733-92835733
Homo sapiens
ecDNA
ec_hsa_55
hg19
chr12:57920204-58962354
chr12
57,920,204
58,962,354
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
Homo sapiens
ecDNA
ec_hsa_56
hg19
chr12:57920205-58672862
chr12
57,920,205
58,672,862
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
Homo sapiens
ecDNA
ec_hsa_57
hg19
chr12:57920218-58962354
chr12
57,920,218
58,962,354
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
Homo sapiens
ecDNA
ec_hsa_58
hg19
chr12:57920237-58962354
chr12
57,920,237
58,962,354
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
Homo sapiens
ecDNA
ec_hsa_59
hg19
chr12:57920245-58669861
chr12
57,920,245
58,669,861
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
AGAP2,CDK4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
Homo sapiens
ecDNA
ec_hsa_60
hg19
chr12:58030230-58278722
chr12
58,030,230
58,278,722
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
AGAP2,CDK4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This belongs to a DM with chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808.
Homo sapiens
ecDNA
ec_hsa_61
hg19
chr12:58731394-58962354
chr12
58,731,394
58,962,354
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
Homo sapiens
ecDNA
ec_hsa_62
hg19
chr12:58731395-58962354
chr12
58,731,395
58,962,354
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
Homo sapiens
ecDNA
ec_hsa_63
hg19
chr12:59233812-60099303
chr12
59,233,812
60,099,303
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628883,chr12:61166630-61688013,chr12:64090187-64424120
Homo sapiens
ecDNA
ec_hsa_64
hg19
chr12:59234812-60099303
chr12
59,234,812
60,099,303
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628188,chr12:61166617-61688013,chr12:64090187-64424120
Homo sapiens
ecDNA
ec_hsa_65
hg19
chr12:59589390-59862924
chr12
59,589,390
59,862,924
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.4.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.5.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
Homo sapiens
ecDNA
ec_hsa_66
hg19
chr12:60627354-61180648
chr12
60,627,354
61,180,648
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
Homo sapiens
ecDNA
ec_hsa_67
hg19
chr12:60627354-61180657
chr12
60,627,354
61,180,657
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
Homo sapiens
ecDNA
ec_hsa_68
hg19
chr12:60627354-61180674
chr12
60,627,354
61,180,674
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
Homo sapiens
ecDNA
ec_hsa_69
hg19
chr12:60627354-61180686
chr12
60,627,354
61,180,686
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
Homo sapiens
ecDNA
ec_hsa_70
hg19
chr12:60627354-61180687
chr12
60,627,354
61,180,687
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
Homo sapiens
ecDNA
ec_hsa_71
hg19
chr12:61166617-61688013
chr12
61,166,617
61,688,013
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628188,chr12:59234812-60099303,chr12:64090187-64424120
Homo sapiens
ecDNA
ec_hsa_72
hg19
chr12:61166630-61688013
chr12
61,166,630
61,688,013
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628883,chr12:59233812-60099303,chr12:64090187-64424120
Homo sapiens
ecDNA
ec_hsa_73
hg19
chr12:62450034-62660568
chr12
62,450,034
62,660,568
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:63199780-63200314,chr12:65892578-65893112,chr7:54329983-55487522
Homo sapiens
ecDNA
ec_hsa_74
hg19
chr12:62674966-62695439
chr12
62,674,966
62,695,439
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
Homo sapiens
ecDNA
ec_hsa_75
hg19
chr12:63199780-63200314
chr12
63,199,780
63,200,314
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:65892578-65893112,chr7:54329983-55487522,chr12:62450034-62660568
Homo sapiens
ecDNA
ec_hsa_76
hg19
chr12:64090187-64424120
chr12
64,090,187
64,424,120
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:Recurent Glioblastoma;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628188,chr12:59234812-60099303,chr12:61166617-61688013;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:57802773-58628883,chr12:61166630-61688013,chr12:59233812-60099303
Homo sapiens
ecDNA
ec_hsa_77
hg19
chr12:64406148-64811726
chr12
64,406,148
64,811,726
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6417);2.Pathology:GBM;3.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808.
Homo sapiens
ecDNA
ec_hsa_78
hg19
chr12:65415047-65738486
chr12
65,415,047
65,738,486
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6419);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:68410054-68646416,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808,chr12:58030230-58278722,chr12:64406148-64811726.
Homo sapiens
ecDNA
ec_hsa_79
hg19
chr12:65892578-65893112
chr12
65,892,578
65,893,112
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.Pathology:GBM;2.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:62450034-62660568,chr12:63199780-63200314,chr7:54329983-55487522
Homo sapiens
ecDNA
ec_hsa_80
hg19
chr12:66478328-66795950
chr12
66,478,328
66,795,950
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66886406-67157415,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66886366-67157415,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
Homo sapiens
ecDNA
ec_hsa_81
hg19
chr12:66478328-66810483
chr12
66,478,328
66,810,483
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66886367-67158548,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66886379-67158536,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
Homo sapiens
ecDNA
ec_hsa_82
hg19
chr12:66886366-67157415
chr12
66,886,366
67,157,415
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:68932602-69417042,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
Homo sapiens
ecDNA
ec_hsa_83
hg19
chr12:66886367-67158548
chr12
66,886,367
67,158,548
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:68932602-69417042,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
Homo sapiens
ecDNA
ec_hsa_84
hg19
chr12:66886379-67158536
chr12
66,886,379
67,158,536
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:68932602-69413093,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
Homo sapiens
ecDNA
ec_hsa_85
hg19
chr12:66886397-67157415
chr12
66,886,397
67,157,415
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:68932602-69413075,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
Homo sapiens
ecDNA
ec_hsa_86
hg19
chr12:66886406-67157415
chr12
66,886,406
67,157,415
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:68932602-69413066,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
Homo sapiens
ecDNA
ec_hsa_87
hg19
chr12:68410054-68646416
chr12
68,410,054
68,646,416
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
IFNG
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6427);Pathology:2.GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68920860-70279998,chr12:70478646-70774110,chr15:59880274-59880808.
Homo sapiens
ecDNA
ec_hsa_88
hg19
chr12:68920860-70279998
chr12
68,920,860
70,279,998
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
MDM2,YEATS4
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6430);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:70478646-70774110,chr15:59880274-59880808.
Homo sapiens
ecDNA
ec_hsa_89
hg19
chr12:68932602-69413066
chr12
68,932,602
69,413,066
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
MDM2
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:73584352-74472853,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.
Homo sapiens
ecDNA
ec_hsa_90
hg19
chr12:68932602-69413075
chr12
68,932,602
69,413,075
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
MDM2
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:73584343-74472853,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
Homo sapiens
ecDNA
ec_hsa_91
hg19
chr12:68932602-69413093
chr12
68,932,602
69,413,093
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
MDM2
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:73584325-74472853,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
Homo sapiens
ecDNA
ec_hsa_92
hg19
chr12:68932602-69417042
chr12
68,932,602
69,417,042
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
MDM2
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
1.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:73584313-74472853,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.2.This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:73584312-74472853,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
Homo sapiens
ecDNA
ec_hsa_93
hg19
chr12:70478646-70774110
chr12
70,478,646
70,774,110
Disease
Brain
Glioblastoma
Prediction
Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
Not Available
29686388
2018
May confer to divergent inheritance patterns
1.This ecDNA is also found in another study(PMID:32807987;eccDNA ID:ec_hsa_6434);2.Pathology:GBM;3.This amplicon together with multiple chromosome segments to form the ecDNA:chr12:58030230-58278722,chr12:64406148-64811726,chr12:65415047-65738486,chr12:68410054-68646416,chr12:68920860-70279998,chr15:59880274-59880808.
Homo sapiens
ecDNA
ec_hsa_94
hg19
chr12:70496679-70497179
chr12
70,496,679
70,497,179
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716267-11716767,chr5:57853483-57853983,chr7:5786928-5787428,chr7:54809106-55477598,chr8:126581168-126601667,chr8:127009013-132643908,chr8:135119160-136243156,chr12:57502937-58562513.
Homo sapiens
ecDNA
ec_hsa_95
hg19
chr12:70496679-70497181
chr12
70,496,679
70,497,181
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr3:11716264-11716766,chr7:54649106-55477598,chr12:57409417-58562513,
Homo sapiens
ecDNA
ec_hsa_96
hg19
chr12:73584312-74472853
chr12
73,584,312
74,472,853
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518243-95518748,chr7:15399102-57957845,chr8:115362976-115363481,chr12:30529733-30530238,chr12:57920205-58672862,chr12:58731395-58962354,chr12:59589390-59862924,chr12:60627354-61180687,chr12:66478328-66795950,chr12:66886366-67157415,chr12:68932602-69417042,chr14:96897075-96897580,chr20:25729296-25749801,chr20:25762035-25862539,chr20:25968409-26168913,chrX:14827449-14827954,chrX:20863666-20864171,chrX:32024870-32025375,chrX:54907463-54907968,chrX:77334378-77334883,chrX:79182449-79182954.
Homo sapiens
ecDNA
ec_hsa_97
hg19
chr12:73584313-74472853
chr12
73,584,313
74,472,853
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518229-95518733,chr5:75465486-75465990,chr7:15191151-57260799,chr8:115362979-115363483,chr12:30529734-30530238,chr12:57920204-58962354,chr12:59589390-59862924,chr12:60627354-61180686,chr12:66478328-66810483,chr12:66886367-67158548,chr12:68932602-69417042,chr14:96897077-96897581,chrX:14827449-14827953,chrX:26704172-26704676,chrX:76062796-76063300,chrX:77334379-77334883,chrX:79182453-79182957.
Homo sapiens
ecDNA
ec_hsa_98
hg19
chr12:73584325-74472853
chr12
73,584,325
74,472,853
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518257-95518749,chr5:75465495-75465987,chr6:145756652-145757144,chr7:15067750-57957845,chr8:115362987-115363479,chr12:57920218-58962354,chr12:59589390-59862924,chr12:60627354-61180674,chr12:66478328-66810483,chr12:66886379-67158536,chr12:68932602-69413093,chr12:76688945-76709436,chr14:96897087-96897579,chr20:25648370-25848861,chr20:26035500-26088579,chrX:14827462-14827954,chrX:32024883-32025375,chrX:76062808-76063300,chrX:77334391-77334883,chrX:79182464-79182956,chrX:154779218-154779710.
Homo sapiens
ecDNA
ec_hsa_99
hg19
chr12:73584343-74472853
chr12
73,584,343
74,472,853
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr4:95518271-95518745,chr5:75465515-75465989,chr7:15190151-57957845,chr8:115363009-115363483,chr12:30529764-30530238,chr12:57920237-58962354,chr12:59589390-59862924,chr12:60627354-61180657,chr12:62674966-62695439,chr12:66478328-66795950,chr12:66886397-67157415,chr12:68932602-69413075,chr14:96897107-96897581,chr20:25762637-25863111,chr20:26053723-26074197,chrX:11933205-11973678,chrX:14827480-14827954,chrX:32024901-32025375,chrX:55860508-55860982,chrX:76062821-76063295,chrX:77334409-77334883,chrX:78284470-78304943,chrX:79182478-79182952,chrX:85022600-85023074.
Homo sapiens
ecDNA
ec_hsa_100
hg19
chr12:73584352-74472853
chr12
73,584,352
74,472,853
Disease
Brain
Glioblastoma
Experiment
FISH&(Manually scrutinized in the Integrative Genomics Viewer/Predicted by AmpliconArchitect)
Not Available
Not Available
The datasets in form of BAM files from exome sequencing, low pass whole genome sequencing and RNA sequencing generated during the current study are available in the the European Genome-phenome Archive (EGA), which is hosted by the EBI and the CRG, under accession number EGAS00001001878
WGS
29686388
2018
May confer to divergent inheritance patterns
This amplicon together with multiple chromosome segments to form the ecDNA:chr1:224238062-224822794,chr4:95518281-95518746,chr5:75465525-75465990,chr7:13441675-57540679,chr8:115363018-115363483,chr12:30529773-30530238,chr12:57920245-58669861,chr12:58731394-58962354,chr12:59589390-59862924,chr12:60627354-61180648,chr12:66478328-66795950,chr12:66886406-67157415,chr12:68932602-69413066,chr14:96897116-96897581,chr18:55431412-55431877,chrX:14827487-14827952,chrX:32024910-32025375,chrX:53177860-53178325,chrX:73314676-73315141,chrX:76062835-76063300,chrX:77334418-77334883,chrX:79182492-79182957.