id
int32 0
901k
| id1
int32 74
23.7M
| id2
int32 74
23.7M
| func1
stringlengths 234
68.5k
| func2
stringlengths 234
68.5k
| label
bool 2
classes |
|---|---|---|---|---|---|
600 | 20,239,269 | 18,377,055 | public static void joinFiles(FileValidator validator, File target, File[] sources) {
FileOutputStream fos = null;
try {
if (!validator.verifyFile(target)) return;
fos = new FileOutputStream(target);
FileInputStream fis = null;
byte[] bytes = new byte[512];
for (int i = 0; i < sources.length; i++) {
fis = new FileInputStream(sources[i]);
int nbread = 0;
try {
while ((nbread = fis.read(bytes)) > -1) {
fos.write(bytes, 0, nbread);
}
} catch (IOException ioe) {
JOptionPane.showMessageDialog(null, ioe, i18n.getString("Failure"), JOptionPane.ERROR_MESSAGE);
} finally {
fis.close();
}
}
} catch (Exception e) {
JOptionPane.showMessageDialog(null, e, i18n.getString("Failure"), JOptionPane.ERROR_MESSAGE);
} finally {
try {
if (fos != null) fos.close();
} catch (IOException e) {
}
}
}
| private void prepareJobFile(ZipEntryRef zer, String nodeDir, String reportDir, Set<ZipEntryRef> statusZers) throws Exception {
String jobDir = nodeDir + File.separator + "job_" + zer.getUri();
if (!isWorkingDirectoryValid(jobDir)) {
throw new Exception("Cannot acces to " + jobDir);
}
File f = new File(jobDir + File.separator + "result.xml");
if (!f.exists() || !f.isFile() || !f.canRead()) {
throw new Exception("Cannot acces to result file " + f.getAbsolutePath());
}
String fcopyName = reportDir + File.separator + zer.getName() + ".xml";
BufferedInputStream bis = new BufferedInputStream(new FileInputStream(f));
BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(fcopyName));
IOUtils.copy(bis, bos);
bis.close();
bos.close();
zer.setUri(fcopyName);
f = new File(jobDir + File.separator + "status.xml");
if (!f.exists() || !f.isFile() || !f.canRead()) {
throw new Exception("Cannot acces to status file " + f.getAbsolutePath());
}
fcopyName = reportDir + File.separator + zer.getName() + "_status.xml";
bis = new BufferedInputStream(new FileInputStream(f));
bos = new BufferedOutputStream(new FileOutputStream(fcopyName));
IOUtils.copy(bis, bos);
bis.close();
bos.close();
statusZers.add(new ZipEntryRef(ZipEntryRef.JOB, zer.getName(), fcopyName));
}
| true |
601 | 8,788,331 | 7,713,594 | private void copyFromStdin(Path dst, FileSystem dstFs) throws IOException {
if (dstFs.isDirectory(dst)) {
throw new IOException("When source is stdin, destination must be a file.");
}
if (dstFs.exists(dst)) {
throw new IOException("Target " + dst.toString() + " already exists.");
}
FSDataOutputStream out = dstFs.create(dst);
try {
IOUtils.copyBytes(System.in, out, getConf(), false);
} finally {
out.close();
}
}
| private static void copyFile(File source, File dest, boolean visibleFilesOnly) throws IOException {
if (visibleFilesOnly && isHiddenOrDotFile(source)) {
return;
}
if (dest.exists()) {
System.err.println("Destination File Already Exists: " + dest);
}
FileChannel in = null, out = null;
try {
in = new FileInputStream(source).getChannel();
out = new FileOutputStream(dest).getChannel();
in.transferTo(0, in.size(), out);
} finally {
if (in != null) {
in.close();
}
if (out != null) {
out.close();
}
}
}
| true |
602 | 15,599,611 | 18,611,368 | private void setInlineXML(Entry entry, DatastreamXMLMetadata ds) throws UnsupportedEncodingException, StreamIOException {
String content;
if (m_obj.hasContentModel(Models.SERVICE_DEPLOYMENT_3_0) && (ds.DatastreamID.equals("SERVICE-PROFILE") || ds.DatastreamID.equals("WSDL"))) {
content = DOTranslationUtility.normalizeInlineXML(new String(ds.xmlContent, m_encoding), m_transContext);
} else {
content = new String(ds.xmlContent, m_encoding);
}
if (m_format.equals(ATOM_ZIP1_1)) {
String name = ds.DSVersionID + ".xml";
try {
m_zout.putNextEntry(new ZipEntry(name));
InputStream is = new ByteArrayInputStream(content.getBytes(m_encoding));
IOUtils.copy(is, m_zout);
m_zout.closeEntry();
is.close();
} catch (IOException e) {
throw new StreamIOException(e.getMessage(), e);
}
IRI iri = new IRI(name);
entry.setSummary(ds.DSVersionID);
entry.setContent(iri, ds.DSMIME);
} else {
entry.setContent(content, ds.DSMIME);
}
}
| private static void downloadFile(URL url, File destFile) throws Exception {
try {
URLConnection urlConnection = url.openConnection();
File tmpFile = null;
try {
tmpFile = File.createTempFile("remoteLib_", null);
InputStream in = null;
FileOutputStream out = null;
try {
in = urlConnection.getInputStream();
out = new FileOutputStream(tmpFile);
IOUtils.copy(in, out);
} finally {
if (out != null) {
out.close();
}
if (in != null) {
in.close();
}
}
FileUtils.copyFile(tmpFile, destFile);
} finally {
if (tmpFile != null) {
tmpFile.delete();
}
}
} catch (Exception ex) {
throw new RuntimeException("Could not download URL: " + url, ex);
}
}
| true |
603 | 601,908 | 12,115,248 | private static void readAndRewrite(File inFile, File outFile) throws IOException {
ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile)));
DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis);
Dataset ds = DcmObjectFactory.getInstance().newDataset();
dcmParser.setDcmHandler(ds.getDcmHandler());
dcmParser.parseDcmFile(null, Tags.PixelData);
PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
System.out.println("reading " + inFile + "...");
pdReader.readPixelData(false);
ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile)));
DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE;
ds.writeDataset(out, dcmEncParam);
ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength());
System.out.println("writing " + outFile + "...");
PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
pdWriter.writePixelData();
out.flush();
out.close();
System.out.println("done!");
}
| public void actionPerformed(ActionEvent evt) {
try {
File tempFile = new File("/tmp/controler.xml");
File f = new File("/tmp/controler-temp.xml");
BufferedInputStream copySource = new BufferedInputStream(new FileInputStream(tempFile));
BufferedOutputStream copyDestination = new BufferedOutputStream(new FileOutputStream(f));
int read = 0;
while (read != -1) {
read = copySource.read(buffer, 0, BUFFER_SIZE);
if (read != -1) {
copyDestination.write(buffer, 0, read);
}
}
copyDestination.write(new String("</log>\n").getBytes());
copySource.close();
copyDestination.close();
XMLParser parser = new XMLParser("Controler");
parser.parse(f);
f.delete();
} catch (IOException ex) {
System.out.println("An error occured during the file copy!");
}
}
| true |
604 | 12,994,590 | 18,464,490 | @HttpAction(name = "map.saveOrUpdate", method = { HttpAction.Method.post }, responseType = "text/plain")
@HttpAuthentication(method = { HttpAuthentication.Method.WSSE })
public String saveOrUpdate(FileItem file, User user, MapOriginal map) throws HttpRpcException {
File tmpFile;
GenericDAO<MapOriginal> mapDao = DAOFactory.createDAO(MapOriginal.class);
try {
assert (file != null);
String jobid = null;
if (file.getContentType().startsWith("image/")) {
tmpFile = File.createTempFile("gmap", "img");
OutputStream out = new FileOutputStream(tmpFile);
IOUtils.copy(file.getInputStream(), out);
out.flush();
out.close();
map.setState(MapOriginal.MapState.UPLOAD);
map.setUser(user);
map.setMapPath(tmpFile.getPath());
map.setThumbnailUrl("/map/inproc.gif");
map.setMimeType(file.getContentType());
mapDao.saveOrUpdate(map);
jobid = PoolFactory.getClientPool().put(map, TaskState.STATE_MO_FINISH, MapOverrideStrategy.class);
}
return jobid;
} catch (IOException e) {
logger.error(e);
throw ERROR_INTERNAL;
} catch (DAOException e) {
logger.error(e);
throw ERROR_INTERNAL;
}
}
| @Override
public void actionPerformed(ActionEvent e) {
if (copiedFiles_ != null) {
File[] tmpFiles = new File[copiedFiles_.length];
File tmpDir = new File(Settings.getPropertyString(ConstantKeys.project_dir), "tmp/");
tmpDir.mkdirs();
for (int i = copiedFiles_.length - 1; i >= 0; i--) {
Frame f = FrameManager.getInstance().getFrameAtIndex(i);
try {
File in = f.getFile();
File out = new File(tmpDir, f.getFile().getName());
FileChannel inChannel = new FileInputStream(in).getChannel();
FileChannel outChannel = new FileOutputStream(out).getChannel();
inChannel.transferTo(0, inChannel.size(), outChannel);
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
tmpFiles[i] = out;
} catch (IOException e1) {
e1.printStackTrace();
}
}
try {
FrameManager.getInstance().insertFrames(getTable().getSelectedRow(), FrameManager.INSERT_TYPE.MOVE, tmpFiles);
} catch (IOException e1) {
e1.printStackTrace();
}
}
}
| true |
605 | 6,419,481 | 20,425,837 | public static void copy(String fromFileName, String toFileName) throws IOException {
File fromFile = new File(fromFileName);
File toFile = new File(toFileName);
if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFileName);
if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFileName);
if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFileName);
if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName());
if (toFile.exists()) {
if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFileName);
System.out.print("Overwrite existing file " + toFile.getName() + "? (Y/N): ");
System.out.flush();
BufferedReader in = new BufferedReader(new InputStreamReader(System.in));
String response = in.readLine();
if (!response.equals("Y") && !response.equals("y")) throw new IOException("FileCopy: " + "existing file was not overwritten.");
} else {
String parent = toFile.getParent();
if (parent == null) parent = System.getProperty("user.dir");
File dir = new File(parent);
if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent);
if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent);
if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent);
}
FileInputStream from = null;
FileOutputStream to = null;
try {
from = new FileInputStream(fromFile);
to = new FileOutputStream(toFile);
byte[] buffer = new byte[4096];
int bytesRead;
while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead);
} finally {
if (from != null) try {
from.close();
} catch (IOException e) {
;
}
if (to != null) try {
to.close();
} catch (IOException e) {
;
}
}
}
| public static String loadSite(String spec) throws IOException {
URL url = new URL(spec);
BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream()));
String output = "";
String str;
while ((str = in.readLine()) != null) {
output += str + "\n";
}
in.close();
return output;
}
| false |
606 | 23,036,596 | 15,609,433 | public static boolean copyfile(String file0, String file1) {
try {
File f0 = new File(file0);
File f1 = new File(file1);
FileInputStream in = new FileInputStream(f0);
FileOutputStream out = new FileOutputStream(f1);
int c;
while ((c = in.read()) != -1) out.write(c);
in.close();
out.close();
in = null;
out = null;
return true;
} catch (Exception e) {
return false;
}
}
| public static int[] bubbleSort2(int[] source) {
if (null != source && source.length > 0) {
boolean flag = false;
while (!flag) {
for (int i = 0; i < source.length - 1; i++) {
if (source[i] > source[i + 1]) {
int temp = source[i];
source[i] = source[i + 1];
source[i + 1] = temp;
break;
} else if (i == source.length - 2) {
flag = true;
}
}
}
}
return source;
}
| false |
607 | 12,879,117 | 13,792,092 | protected String insertCommand(String command) throws ServletException {
String digest;
try {
MessageDigest md = MessageDigest.getInstance(m_messagedigest_algorithm);
md.update(command.getBytes());
byte bytes[] = new byte[20];
m_random.nextBytes(bytes);
md.update(bytes);
digest = bytesToHex(md.digest());
} catch (NoSuchAlgorithmException e) {
throw new ServletException("NoSuchAlgorithmException while " + "attempting to generate graph ID: " + e);
}
String id = System.currentTimeMillis() + "-" + digest;
m_map.put(id, command);
return id;
}
| public NodeId generateTopicId(String topicName) {
MessageDigest md = null;
try {
md = MessageDigest.getInstance("SHA");
} catch (NoSuchAlgorithmException e) {
System.err.println("No SHA support!");
}
md.update(topicName.getBytes());
byte[] digest = md.digest();
NodeId newId = new NodeId(digest);
return newId;
}
| true |
608 | 14,227,643 | 5,875,193 | public String hmacSHA256(String message, byte[] key) {
MessageDigest sha256 = null;
try {
sha256 = MessageDigest.getInstance("SHA-256");
} catch (NoSuchAlgorithmException e) {
throw new java.lang.AssertionError(this.getClass().getName() + ".hmacSHA256(): SHA-256 algorithm not found!");
}
if (key.length > 64) {
sha256.update(key);
key = sha256.digest();
sha256.reset();
}
byte block[] = new byte[64];
for (int i = 0; i < key.length; ++i) block[i] = key[i];
for (int i = key.length; i < block.length; ++i) block[i] = 0;
for (int i = 0; i < 64; ++i) block[i] ^= 0x36;
sha256.update(block);
try {
sha256.update(message.getBytes("UTF-8"));
} catch (UnsupportedEncodingException e) {
throw new java.lang.AssertionError("ITunesU.hmacSH256(): UTF-8 encoding not supported!");
}
byte[] hash = sha256.digest();
sha256.reset();
for (int i = 0; i < 64; ++i) block[i] ^= (0x36 ^ 0x5c);
sha256.update(block);
sha256.update(hash);
hash = sha256.digest();
char[] hexadecimals = new char[hash.length * 2];
for (int i = 0; i < hash.length; ++i) {
for (int j = 0; j < 2; ++j) {
int value = (hash[i] >> (4 - 4 * j)) & 0xf;
char base = (value < 10) ? ('0') : ('a' - 10);
hexadecimals[i * 2 + j] = (char) (base + value);
}
}
return new String(hexadecimals);
}
| private static void zip(ZipArchiveOutputStream zos, File efile, String base) throws IOException {
if (efile.isDirectory()) {
File[] lf = efile.listFiles();
base = base + File.separator + efile.getName();
for (File file : lf) {
zip(zos, file, base);
}
} else {
ZipArchiveEntry entry = new ZipArchiveEntry(efile, base + File.separator + efile.getName());
zos.setEncoding("utf-8");
zos.putArchiveEntry(entry);
InputStream is = new FileInputStream(efile);
IOUtils.copy(is, zos);
is.close();
zos.closeArchiveEntry();
}
}
| false |
609 | 15,145,907 | 5,084,569 | public boolean authenticate(String userName, String loginPassword) {
if (!systemConfigManager.getBool("ldap", "authEnable")) {
return false;
}
String ldapName = userName;
AkteraUser user = userDAO.findUserByName(userName);
if (user != null && StringTools.isNotTrimEmpty(user.getLdapName())) {
ldapName = user.getLdapName();
}
String server = systemConfigManager.getString("ldap", "authHost");
if (StringTools.isTrimEmpty(server)) {
return false;
}
int port = NumberTools.toInt(systemConfigManager.get("ldap", "authPort"), 389);
String type = StringTools.trim(systemConfigManager.getString("ldap", "authType"));
String baseDn = StringTools.trim(systemConfigManager.getString("ldap", "authBaseDn"));
String userDn = StringTools.trim(systemConfigManager.getString("ldap", "authUserDn"));
String password = StringTools.trim(systemConfigManager.getString("ldap", "authPassword"));
String query = StringTools.trim(systemConfigManager.getString("ldap", "authQuery"));
String bindDn = StringTools.trim(systemConfigManager.getString("ldap", "authBindDn"));
String passwordAttributeName = StringTools.trim(systemConfigManager.getString("ldap", "authPasswordAttributeName"));
Map<String, Object> params = new HashMap<String, Object>();
params.put("userName", userName);
params.put("ldapName", ldapName);
params.put("loginName", StringTools.isTrimEmpty(ldapName) ? userName : ldapName);
query = StringTools.replaceTemplate(query, params);
bindDn = StringTools.replaceTemplate(bindDn, params);
Hashtable<String, Object> env = new Hashtable<String, Object>();
env.put(Context.INITIAL_CONTEXT_FACTORY, "com.sun.jndi.ldap.LdapCtxFactory");
env.put(Context.PROVIDER_URL, "ldap://" + server + ":" + port + "/" + baseDn);
env.put(Context.SECURITY_AUTHENTICATION, "simple");
if ("ldapAuthBind".equals(type)) {
env.put(Context.SECURITY_PRINCIPAL, bindDn);
env.put(Context.SECURITY_CREDENTIALS, loginPassword);
try {
DirContext ctx = new InitialDirContext(env);
try {
ctx.close();
} catch (Exception ignored) {
}
return true;
} catch (Exception ignored) {
return false;
}
}
if (StringTools.isTrimEmpty(userDn) || StringTools.isTrimEmpty(password)) {
return false;
}
env.put(Context.SECURITY_PRINCIPAL, userDn);
env.put(Context.SECURITY_CREDENTIALS, password);
DirContext ctx = null;
NamingEnumeration<SearchResult> results = null;
try {
ctx = new InitialDirContext(env);
SearchControls controls = new SearchControls();
controls.setSearchScope(SearchControls.SUBTREE_SCOPE);
results = ctx.search("", query, controls);
if (results.hasMore()) {
SearchResult searchResult = results.next();
Attributes attributes = searchResult.getAttributes();
if (attributes.get(passwordAttributeName) == null) {
return false;
}
String pass = new String((byte[]) attributes.get(passwordAttributeName).get());
if (pass.startsWith("{SHA}") || pass.startsWith("{MD5}")) {
String method = pass.substring(1, pass.indexOf('}'));
MessageDigest digest = MessageDigest.getInstance(method);
digest.update(loginPassword.getBytes(), 0, loginPassword.length());
if (pass.equals("{" + method + "}" + Base64.encode(digest.digest()))) {
return true;
}
} else {
if (pass.equals(loginPassword)) {
return true;
}
}
}
} catch (Exception x) {
} finally {
if (results != null) {
try {
results.close();
} catch (Exception e) {
}
}
if (ctx != null) {
try {
ctx.close();
} catch (Exception e) {
}
}
}
return false;
}
| public static String generateGuid(boolean secure) {
MessageDigest md5 = null;
String valueBeforeMD5 = null;
String valueAfterMD5 = null;
StringBuffer sbValueBeforeMD5 = new StringBuffer();
try {
md5 = MessageDigest.getInstance("MD5");
} catch (NoSuchAlgorithmException e) {
System.out.println("Error: " + e);
}
try {
long time = System.currentTimeMillis();
long rand = 0L;
if (secure) rand = mySecureRand.nextLong(); else rand = myRand.nextLong();
sbValueBeforeMD5.append(s_id);
sbValueBeforeMD5.append(":");
sbValueBeforeMD5.append(Long.toString(time));
sbValueBeforeMD5.append(":");
sbValueBeforeMD5.append(Long.toString(rand));
valueBeforeMD5 = sbValueBeforeMD5.toString();
md5.update(valueBeforeMD5.getBytes());
byte array[] = md5.digest();
StringBuffer sb = new StringBuffer();
for (int j = 0; j < array.length; j++) {
int b = array[j] & 0xff;
if (b < 16) sb.append('0');
sb.append(Integer.toHexString(b));
}
valueAfterMD5 = sb.toString();
} catch (Exception e) {
System.out.println("Error:" + e);
}
String raw = valueAfterMD5.toUpperCase();
StringBuffer sb = new StringBuffer();
sb.append(raw.substring(0, 8));
sb.append("-");
sb.append(raw.substring(8, 12));
sb.append("-");
sb.append(raw.substring(12, 16));
sb.append("-");
sb.append(raw.substring(16, 20));
sb.append("-");
sb.append(raw.substring(20));
return sb.toString();
}
| true |
610 | 20,352,327 | 7,034,031 | public XmldbURI createFile(String newName, InputStream is, Long length, String contentType) throws IOException, PermissionDeniedException, CollectionDoesNotExistException {
if (LOG.isDebugEnabled()) LOG.debug("Create '" + newName + "' in '" + xmldbUri + "'");
XmldbURI newNameUri = XmldbURI.create(newName);
MimeType mime = MimeTable.getInstance().getContentTypeFor(newName);
if (mime == null) {
mime = MimeType.BINARY_TYPE;
}
DBBroker broker = null;
Collection collection = null;
BufferedInputStream bis = new BufferedInputStream(is);
VirtualTempFile vtf = new VirtualTempFile();
BufferedOutputStream bos = new BufferedOutputStream(vtf);
IOUtils.copy(bis, bos);
bis.close();
bos.close();
vtf.close();
if (mime.isXMLType() && vtf.length() == 0L) {
if (LOG.isDebugEnabled()) LOG.debug("Creating dummy XML file for null resource lock '" + newNameUri + "'");
vtf = new VirtualTempFile();
IOUtils.write("<null_resource/>", vtf);
vtf.close();
}
TransactionManager transact = brokerPool.getTransactionManager();
Txn txn = transact.beginTransaction();
try {
broker = brokerPool.get(subject);
collection = broker.openCollection(xmldbUri, Lock.WRITE_LOCK);
if (collection == null) {
LOG.debug("Collection " + xmldbUri + " does not exist");
transact.abort(txn);
throw new CollectionDoesNotExistException(xmldbUri + "");
}
if (mime.isXMLType()) {
if (LOG.isDebugEnabled()) LOG.debug("Inserting XML document '" + mime.getName() + "'");
VirtualTempFileInputSource vtfis = new VirtualTempFileInputSource(vtf);
IndexInfo info = collection.validateXMLResource(txn, broker, newNameUri, vtfis);
DocumentImpl doc = info.getDocument();
doc.getMetadata().setMimeType(mime.getName());
collection.store(txn, broker, info, vtfis, false);
} else {
if (LOG.isDebugEnabled()) LOG.debug("Inserting BINARY document '" + mime.getName() + "'");
InputStream fis = vtf.getByteStream();
bis = new BufferedInputStream(fis);
DocumentImpl doc = collection.addBinaryResource(txn, broker, newNameUri, bis, mime.getName(), length.longValue());
bis.close();
}
transact.commit(txn);
if (LOG.isDebugEnabled()) LOG.debug("Document created sucessfully");
} catch (EXistException e) {
LOG.error(e);
transact.abort(txn);
throw new IOException(e);
} catch (TriggerException e) {
LOG.error(e);
transact.abort(txn);
throw new IOException(e);
} catch (SAXException e) {
LOG.error(e);
transact.abort(txn);
throw new IOException(e);
} catch (LockException e) {
LOG.error(e);
transact.abort(txn);
throw new PermissionDeniedException(xmldbUri + "");
} catch (IOException e) {
LOG.error(e);
transact.abort(txn);
throw e;
} catch (PermissionDeniedException e) {
LOG.error(e);
transact.abort(txn);
throw e;
} finally {
if (vtf != null) {
vtf.delete();
}
if (collection != null) {
collection.release(Lock.WRITE_LOCK);
}
brokerPool.release(broker);
if (LOG.isDebugEnabled()) LOG.debug("Finished creation");
}
XmldbURI newResource = xmldbUri.append(newName);
return newResource;
}
| private void copyFile(File sourceFile, File destFile) throws IOException {
if (log.isDebugEnabled()) {
log.debug("CopyFile : Source[" + sourceFile.getAbsolutePath() + "] Dest[" + destFile.getAbsolutePath() + "]");
}
if (!destFile.exists()) {
destFile.createNewFile();
}
FileChannel source = null;
FileChannel destination = null;
try {
source = new FileInputStream(sourceFile).getChannel();
destination = new FileOutputStream(destFile).getChannel();
destination.transferFrom(source, 0, source.size());
} finally {
if (source != null) {
source.close();
}
if (destination != null) {
destination.close();
}
}
}
| true |
611 | 21,407,347 | 848,240 | public boolean load() {
if (getFilename() != null && getFilename().length() > 0) {
try {
File file = new File(PreferencesManager.getDirectoryLocation("macros") + File.separator + getFilename());
URL url = file.toURL();
InputStreamReader isr = new InputStreamReader(url.openStream());
BufferedReader br = new BufferedReader(isr);
String line = br.readLine();
String macro_text = "";
while (line != null) {
macro_text = macro_text.concat(line);
line = br.readLine();
if (line != null) {
macro_text = macro_text.concat(System.getProperty("line.separator"));
}
}
code = macro_text;
} catch (Exception e) {
System.err.println("Exception at StoredMacro.load(): " + e.toString());
return false;
}
}
return true;
}
| public static void doVersionCheck(View view) {
view.showWaitCursor();
try {
URL url = new URL(jEdit.getProperty("version-check.url"));
InputStream in = url.openStream();
BufferedReader bin = new BufferedReader(new InputStreamReader(in));
String line;
String version = null;
String build = null;
while ((line = bin.readLine()) != null) {
if (line.startsWith(".version")) version = line.substring(8).trim(); else if (line.startsWith(".build")) build = line.substring(6).trim();
}
bin.close();
if (version != null && build != null) {
if (jEdit.getBuild().compareTo(build) < 0) newVersionAvailable(view, version, url); else {
GUIUtilities.message(view, "version-check" + ".up-to-date", new String[0]);
}
}
} catch (IOException e) {
String[] args = { jEdit.getProperty("version-check.url"), e.toString() };
GUIUtilities.error(view, "read-error", args);
}
view.hideWaitCursor();
}
| true |
612 | 2,511,576 | 2,247,987 | public void doUpdate(String version) {
try {
final String hyperlink_url = "http://xnavigator.sourceforge.net/dist/";
JFrame updateInfoFrame = null;
try {
JPanel panel = new JPanel();
panel.setLayout(null);
panel.setBackground(new java.awt.Color(255, 255, 255));
panel.setBorder(new TitledBorder(""));
ClassLoader cl = this.getClass().getClassLoader();
int BORDER_TOP = 10;
int PANEL_WIDTH = 400;
int TEXT_WIDTH = 360;
int TEXT_HEIGHT = 50;
int TEXT_LEFT = 20;
int y = BORDER_TOP;
I3Label title = new I3Label("XNavigator Update");
title.setBounds(30, y, 350, 25);
panel.add(title);
ImageIcon splash3 = new ImageIcon(Toolkit.getDefaultToolkit().getImage(cl.getResource("resources/splash3.jpg")));
JButton left = new JButton(splash3);
left.setBounds(20, y += 30, 350, 235);
left.setBorder(null);
left.setFocusPainted(false);
panel.add(left);
JTextPane informText = new JTextPane();
informText.setLayout(null);
informText.setBounds(TEXT_LEFT, y += 235, TEXT_WIDTH, TEXT_HEIGHT);
informText.setBackground(new java.awt.Color(255, 255, 255));
informText.setEditable(false);
informText.setFocusable(false);
panel.add(informText);
JTextPane progressText = new JTextPane();
progressText.setLayout(null);
progressText.setBounds(TEXT_LEFT, y += TEXT_HEIGHT, TEXT_WIDTH, TEXT_HEIGHT);
progressText.setBackground(new java.awt.Color(255, 255, 255));
progressText.setEditable(false);
progressText.setFocusable(false);
panel.add(progressText);
updateInfoFrame = new JFrame();
updateInfoFrame.setUndecorated(false);
updateInfoFrame.setTitle("XNavigator Update");
updateInfoFrame.setSize(400, 430);
updateInfoFrame.getContentPane().add(panel);
updateInfoFrame.setVisible(true);
updateInfoFrame.setEnabled(true);
updateInfoFrame.setResizable(false);
updateInfoFrame.setLocation(300, 150);
updateInfoFrame.addWindowListener(this);
panel.repaint();
informText.setText(i18n.getString("UPDATE_CHECK_INSTANCES"));
String message0 = i18n.getString("UPDATE_INSTANCES");
JLabel label01 = new JLabel("<html><head><style type=\"text/css\"><!--.Stil2 {font-size: 10px;font-weight: bold;}--></style></head><body><span class=\"Stil2\">XNavigator Update</span></body></html>");
JLabel label02 = new JLabel("<html><head><style type=\"text/css\"><!--.Stil2 {font-size: 10px;font-weight: normal;}--></style></head><body><span class=\"Stil2\">" + "<br>" + message0 + " " + "</span></body></html>");
Object[] objects0 = { label01, label02 };
Object[] options0 = { i18n.getString("CONTINUE"), i18n.getString("CANCEL") };
int option = JOptionPane.showOptionDialog(null, objects0, "Update", JOptionPane.DEFAULT_OPTION, JOptionPane.INFORMATION_MESSAGE, null, options0, options0[0]);
if (option == 0) {
} else {
updateInfoFrame.dispose();
return;
}
informText.setText(i18n.getString("UPDATE_CHECK_ENVIRONMENT"));
if ((new File(".project")).exists()) {
Object[] objects = { "Im Eclipse Projekt solltest Du besser die neueste Version aus dem SVN ziehen -Arne-", "Update abgebrochen" };
JOptionPane.showMessageDialog(null, objects, "Update Error", JOptionPane.ERROR_MESSAGE);
updateInfoFrame.dispose();
return;
}
Object[] objects1 = { i18n.getString("UPDATE_WARNING") };
Object[] options1 = { i18n.getString("CONTINUE"), i18n.getString("CANCEL") };
int opt = JOptionPane.showOptionDialog(null, objects1, i18n.getString("WARNING"), JOptionPane.DEFAULT_OPTION, JOptionPane.INFORMATION_MESSAGE, null, options1, options1[0]);
if (opt == 1) {
updateInfoFrame.dispose();
return;
}
updateInfoFrame.requestFocus();
updateInfoFrame.requestFocusInWindow();
informText.setText(i18n.getString("UPDATE_DOWNLOADING"));
String updateFile = "XNavigator-" + version + ".zip";
URL url = new URL(hyperlink_url + updateFile);
URLConnection conn = url.openConnection();
int fileSize = conn.getContentLength();
String urlString = url.toString();
progressText.setText("Download " + urlString + " ... 0%");
java.io.BufferedInputStream in = new java.io.BufferedInputStream(url.openStream());
java.io.FileOutputStream fos = new java.io.FileOutputStream(updateFile);
java.io.BufferedOutputStream bout = new BufferedOutputStream(fos, 1024);
int BUFFER_SIZE = 1024;
byte data[] = new byte[BUFFER_SIZE];
int count = 0;
int size = 0;
int prev_perc = 0;
while ((count = in.read(data, 0, BUFFER_SIZE)) > 0) {
bout.write(data, 0, count);
size += count;
int perc = (100 * size) / fileSize;
if (perc > prev_perc) {
progressText.setText("Download " + urlString + " ... " + perc + "%");
prev_perc = perc;
}
}
bout.close();
fos.close();
in.close();
progressText.setText("Download " + url.toString() + " ... ok.");
informText.setText(i18n.getString("UPDATE_EXTRACTING"));
boolean deleted = deleteFiles(new File("./lib"), false);
if (!deleted) {
updateInfoFrame.dispose();
return;
}
extractZipFile(updateFile, progressText);
progressText.setText(i18n.getString("UPDATE_COMPLETE"));
Object[] objects = { i18n.getString("UPDATE_COMPLETE") };
Object[] options = { i18n.getString("OK") };
JOptionPane.showOptionDialog(null, objects, "Success", JOptionPane.DEFAULT_OPTION, JOptionPane.INFORMATION_MESSAGE, null, options, options[0]);
System.exit(0);
} catch (Exception e) {
e.printStackTrace();
String message = "";
String hyperlink = "";
message = i18n.getString("UPDATE_FAILED");
hyperlink = "<a href='" + hyperlink_url + "'>" + hyperlink_url + "</a>";
JLabel label2 = new JLabel("<html><head><style type=\"text/css\"><!--.Stil2 {font-size: 10px;font-weight: normal;}--></style></head><body><span class=\"Stil2\">" + "<br>" + message + " " + "</span></body></html>");
JLabel label3 = new JLabel("<html><head><style type=\"text/css\"><!--.Stil2 {font-size: 10px;font-weight: normal;}--></style></head><body><span class=\"Stil2\">" + hyperlink + "<br>" + "</span></body></html>");
JLabel label4 = new JLabel("<html><head><style type=\"text/css\"><!--.Stil2 {font-size: 10px;font-weight: normal;}--></style></head><body><span class=\"Stil2\">" + version + "</span></body></html>");
label3.setCursor(Cursor.getPredefinedCursor(Cursor.HAND_CURSOR));
label3.addMouseListener(new MouseAdapter() {
@Override
public void mouseClicked(MouseEvent e) {
if (e.getClickCount() > 0) {
try {
javax.jnlp.BasicService basicService;
basicService = (javax.jnlp.BasicService) javax.jnlp.ServiceManager.lookup("javax.jnlp.BasicService");
basicService.showDocument(new URL(hyperlink_url));
} catch (Exception e1) {
e1.printStackTrace();
try {
Runtime.getRuntime().exec("cmd.exe /c start " + hyperlink_url);
} catch (IOException e2) {
e2.printStackTrace();
}
}
}
}
});
Object[] objects = { label2, label3, label4 };
Object[] options = { i18n.getString("OK") };
updateInfoFrame.dispose();
JOptionPane.showOptionDialog(null, objects, "Error", JOptionPane.DEFAULT_OPTION, JOptionPane.ERROR_MESSAGE, null, options, options[0]);
}
updateInfoFrame.setVisible(false);
updateInfoFrame.dispose();
} catch (Exception e) {
e.printStackTrace();
}
}
| public static void main(String argv[]) {
Matrix A, B, C, Z, O, I, R, S, X, SUB, M, T, SQ, DEF, SOL;
int errorCount = 0;
int warningCount = 0;
double tmp, s;
double[] columnwise = { 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12. };
double[] rowwise = { 1., 4., 7., 10., 2., 5., 8., 11., 3., 6., 9., 12. };
double[][] avals = { { 1., 4., 7., 10. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } };
double[][] rankdef = avals;
double[][] tvals = { { 1., 2., 3. }, { 4., 5., 6. }, { 7., 8., 9. }, { 10., 11., 12. } };
double[][] subavals = { { 5., 8., 11. }, { 6., 9., 12. } };
double[][] rvals = { { 1., 4., 7. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } };
double[][] pvals = { { 4., 1., 1. }, { 1., 2., 3. }, { 1., 3., 6. } };
double[][] ivals = { { 1., 0., 0., 0. }, { 0., 1., 0., 0. }, { 0., 0., 1., 0. } };
double[][] evals = { { 0., 1., 0., 0. }, { 1., 0., 2.e-7, 0. }, { 0., -2.e-7, 0., 1. }, { 0., 0., 1., 0. } };
double[][] square = { { 166., 188., 210. }, { 188., 214., 240. }, { 210., 240., 270. } };
double[][] sqSolution = { { 13. }, { 15. } };
double[][] condmat = { { 1., 3. }, { 7., 9. } };
int rows = 3, cols = 4;
int invalidld = 5;
int raggedr = 0;
int raggedc = 4;
int validld = 3;
int nonconformld = 4;
int ib = 1, ie = 2, jb = 1, je = 3;
int[] rowindexset = { 1, 2 };
int[] badrowindexset = { 1, 3 };
int[] columnindexset = { 1, 2, 3 };
int[] badcolumnindexset = { 1, 2, 4 };
double columnsummax = 33.;
double rowsummax = 30.;
double sumofdiagonals = 15;
double sumofsquares = 650;
print("\nTesting constructors and constructor-like methods...\n");
try {
A = new Matrix(columnwise, invalidld);
errorCount = try_failure(errorCount, "Catch invalid length in packed constructor... ", "exception not thrown for invalid input");
} catch (IllegalArgumentException e) {
try_success("Catch invalid length in packed constructor... ", e.getMessage());
}
try {
A = new Matrix(rvals);
tmp = A.get(raggedr, raggedc);
} catch (IllegalArgumentException e) {
try_success("Catch ragged input to default constructor... ", e.getMessage());
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "Catch ragged input to constructor... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later");
}
try {
A = Matrix.constructWithCopy(rvals);
tmp = A.get(raggedr, raggedc);
} catch (IllegalArgumentException e) {
try_success("Catch ragged input to constructWithCopy... ", e.getMessage());
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "Catch ragged input to constructWithCopy... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later");
}
A = new Matrix(columnwise, validld);
B = new Matrix(avals);
tmp = B.get(0, 0);
avals[0][0] = 0.0;
C = B.minus(A);
avals[0][0] = tmp;
B = Matrix.constructWithCopy(avals);
tmp = B.get(0, 0);
avals[0][0] = 0.0;
if ((tmp - B.get(0, 0)) != 0.0) {
errorCount = try_failure(errorCount, "constructWithCopy... ", "copy not effected... data visible outside");
} else {
try_success("constructWithCopy... ", "");
}
avals[0][0] = columnwise[0];
I = new Matrix(ivals);
try {
check(I, Matrix.identity(3, 4));
try_success("identity... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "identity... ", "identity Matrix not successfully created");
}
print("\nTesting access methods...\n");
B = new Matrix(avals);
if (B.getRowDimension() != rows) {
errorCount = try_failure(errorCount, "getRowDimension... ", "");
} else {
try_success("getRowDimension... ", "");
}
if (B.getColumnDimension() != cols) {
errorCount = try_failure(errorCount, "getColumnDimension... ", "");
} else {
try_success("getColumnDimension... ", "");
}
B = new Matrix(avals);
double[][] barray = B.getArray();
if (barray != avals) {
errorCount = try_failure(errorCount, "getArray... ", "");
} else {
try_success("getArray... ", "");
}
barray = B.getArrayCopy();
if (barray == avals) {
errorCount = try_failure(errorCount, "getArrayCopy... ", "data not (deep) copied");
}
try {
check(barray, avals);
try_success("getArrayCopy... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getArrayCopy... ", "data not successfully (deep) copied");
}
double[] bpacked = B.getColumnPackedCopy();
try {
check(bpacked, columnwise);
try_success("getColumnPackedCopy... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getColumnPackedCopy... ", "data not successfully (deep) copied by columns");
}
bpacked = B.getRowPackedCopy();
try {
check(bpacked, rowwise);
try_success("getRowPackedCopy... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getRowPackedCopy... ", "data not successfully (deep) copied by rows");
}
try {
tmp = B.get(B.getRowDimension(), B.getColumnDimension() - 1);
errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
tmp = B.get(B.getRowDimension() - 1, B.getColumnDimension());
errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("get(int,int)... OutofBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown");
}
try {
if (B.get(B.getRowDimension() - 1, B.getColumnDimension() - 1) != avals[B.getRowDimension() - 1][B.getColumnDimension() - 1]) {
errorCount = try_failure(errorCount, "get(int,int)... ", "Matrix entry (i,j) not successfully retreived");
} else {
try_success("get(int,int)... ", "");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "get(int,int)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
SUB = new Matrix(subavals);
try {
M = B.getMatrix(ib, ie + B.getRowDimension() + 1, jb, je);
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
M = B.getMatrix(ib, ie, jb, je + B.getColumnDimension() + 1);
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("getMatrix(int,int,int,int)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
M = B.getMatrix(ib, ie, jb, je);
try {
check(SUB, M);
try_success("getMatrix(int,int,int,int)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "submatrix not successfully retreived");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
M = B.getMatrix(ib, ie, badcolumnindexset);
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
M = B.getMatrix(ib, ie + B.getRowDimension() + 1, columnindexset);
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("getMatrix(int,int,int[])... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
M = B.getMatrix(ib, ie, columnindexset);
try {
check(SUB, M);
try_success("getMatrix(int,int,int[])... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "submatrix not successfully retreived");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
M = B.getMatrix(badrowindexset, jb, je);
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
M = B.getMatrix(rowindexset, jb, je + B.getColumnDimension() + 1);
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("getMatrix(int[],int,int)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
M = B.getMatrix(rowindexset, jb, je);
try {
check(SUB, M);
try_success("getMatrix(int[],int,int)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "submatrix not successfully retreived");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
M = B.getMatrix(badrowindexset, columnindexset);
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
M = B.getMatrix(rowindexset, badcolumnindexset);
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("getMatrix(int[],int[])... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
M = B.getMatrix(rowindexset, columnindexset);
try {
check(SUB, M);
try_success("getMatrix(int[],int[])... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "submatrix not successfully retreived");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
B.set(B.getRowDimension(), B.getColumnDimension() - 1, 0.);
errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.set(B.getRowDimension() - 1, B.getColumnDimension(), 0.);
errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("set(int,int,double)... OutofBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown");
}
try {
B.set(ib, jb, 0.);
tmp = B.get(ib, jb);
try {
check(tmp, 0.);
try_success("set(int,int,double)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "set(int,int,double)... ", "Matrix element not successfully set");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "set(int,int,double)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
M = new Matrix(2, 3, 0.);
try {
B.setMatrix(ib, ie + B.getRowDimension() + 1, jb, je, M);
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.setMatrix(ib, ie, jb, je + B.getColumnDimension() + 1, M);
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("setMatrix(int,int,int,int,Matrix)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
B.setMatrix(ib, ie, jb, je, M);
try {
check(M.minus(B.getMatrix(ib, ie, jb, je)), M);
try_success("setMatrix(int,int,int,int,Matrix)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "submatrix not successfully set");
}
B.setMatrix(ib, ie, jb, je, SUB);
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
B.setMatrix(ib, ie + B.getRowDimension() + 1, columnindexset, M);
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.setMatrix(ib, ie, badcolumnindexset, M);
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("setMatrix(int,int,int[],Matrix)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
B.setMatrix(ib, ie, columnindexset, M);
try {
check(M.minus(B.getMatrix(ib, ie, columnindexset)), M);
try_success("setMatrix(int,int,int[],Matrix)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "submatrix not successfully set");
}
B.setMatrix(ib, ie, jb, je, SUB);
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
B.setMatrix(rowindexset, jb, je + B.getColumnDimension() + 1, M);
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.setMatrix(badrowindexset, jb, je, M);
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("setMatrix(int[],int,int,Matrix)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
B.setMatrix(rowindexset, jb, je, M);
try {
check(M.minus(B.getMatrix(rowindexset, jb, je)), M);
try_success("setMatrix(int[],int,int,Matrix)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "submatrix not successfully set");
}
B.setMatrix(ib, ie, jb, je, SUB);
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
B.setMatrix(rowindexset, badcolumnindexset, M);
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.setMatrix(badrowindexset, columnindexset, M);
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("setMatrix(int[],int[],Matrix)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
B.setMatrix(rowindexset, columnindexset, M);
try {
check(M.minus(B.getMatrix(rowindexset, columnindexset)), M);
try_success("setMatrix(int[],int[],Matrix)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "submatrix not successfully set");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
print("\nTesting array-like methods...\n");
S = new Matrix(columnwise, nonconformld);
R = Matrix.random(A.getRowDimension(), A.getColumnDimension());
A = R;
try {
S = A.minus(S);
errorCount = try_failure(errorCount, "minus conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("minus conformance check... ", "");
}
if (A.minus(R).norm1() != 0.) {
errorCount = try_failure(errorCount, "minus... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)");
} else {
try_success("minus... ", "");
}
A = R.copy();
A.minusEquals(R);
Z = new Matrix(A.getRowDimension(), A.getColumnDimension());
try {
A.minusEquals(S);
errorCount = try_failure(errorCount, "minusEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("minusEquals conformance check... ", "");
}
if (A.minus(Z).norm1() != 0.) {
errorCount = try_failure(errorCount, "minusEquals... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)");
} else {
try_success("minusEquals... ", "");
}
A = R.copy();
B = Matrix.random(A.getRowDimension(), A.getColumnDimension());
C = A.minus(B);
try {
S = A.plus(S);
errorCount = try_failure(errorCount, "plus conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("plus conformance check... ", "");
}
try {
check(C.plus(B), A);
try_success("plus... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "plus... ", "(C = A - B, but C + B != A)");
}
C = A.minus(B);
C.plusEquals(B);
try {
A.plusEquals(S);
errorCount = try_failure(errorCount, "plusEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("plusEquals conformance check... ", "");
}
try {
check(C, A);
try_success("plusEquals... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "plusEquals... ", "(C = A - B, but C = C + B != A)");
}
A = R.uminus();
try {
check(A.plus(R), Z);
try_success("uminus... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "uminus... ", "(-A + A != zeros)");
}
A = R.copy();
O = new Matrix(A.getRowDimension(), A.getColumnDimension(), 1.0);
C = A.arrayLeftDivide(R);
try {
S = A.arrayLeftDivide(S);
errorCount = try_failure(errorCount, "arrayLeftDivide conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayLeftDivide conformance check... ", "");
}
try {
check(C, O);
try_success("arrayLeftDivide... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayLeftDivide... ", "(M.\\M != ones)");
}
try {
A.arrayLeftDivideEquals(S);
errorCount = try_failure(errorCount, "arrayLeftDivideEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayLeftDivideEquals conformance check... ", "");
}
A.arrayLeftDivideEquals(R);
try {
check(A, O);
try_success("arrayLeftDivideEquals... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayLeftDivideEquals... ", "(M.\\M != ones)");
}
A = R.copy();
try {
A.arrayRightDivide(S);
errorCount = try_failure(errorCount, "arrayRightDivide conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayRightDivide conformance check... ", "");
}
C = A.arrayRightDivide(R);
try {
check(C, O);
try_success("arrayRightDivide... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayRightDivide... ", "(M./M != ones)");
}
try {
A.arrayRightDivideEquals(S);
errorCount = try_failure(errorCount, "arrayRightDivideEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayRightDivideEquals conformance check... ", "");
}
A.arrayRightDivideEquals(R);
try {
check(A, O);
try_success("arrayRightDivideEquals... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayRightDivideEquals... ", "(M./M != ones)");
}
A = R.copy();
B = Matrix.random(A.getRowDimension(), A.getColumnDimension());
try {
S = A.arrayTimes(S);
errorCount = try_failure(errorCount, "arrayTimes conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayTimes conformance check... ", "");
}
C = A.arrayTimes(B);
try {
check(C.arrayRightDivideEquals(B), A);
try_success("arrayTimes... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayTimes... ", "(A = R, C = A.*B, but C./B != A)");
}
try {
A.arrayTimesEquals(S);
errorCount = try_failure(errorCount, "arrayTimesEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayTimesEquals conformance check... ", "");
}
A.arrayTimesEquals(B);
try {
check(A.arrayRightDivideEquals(B), R);
try_success("arrayTimesEquals... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayTimesEquals... ", "(A = R, A = A.*B, but A./B != R)");
}
print("\nTesting I/O methods...\n");
try {
DecimalFormat fmt = new DecimalFormat("0.0000E00");
fmt.setDecimalFormatSymbols(new DecimalFormatSymbols(Locale.US));
PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out"));
A.print(FILE, fmt, 10);
FILE.close();
R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out")));
if (A.minus(R).norm1() < .001) {
try_success("print()/read()...", "");
} else {
errorCount = try_failure(errorCount, "print()/read()...", "Matrix read from file does not match Matrix printed to file");
}
} catch (java.io.IOException ioe) {
warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry");
} catch (Exception e) {
try {
e.printStackTrace(System.out);
warningCount = try_warning(warningCount, "print()/read()...", "Formatting error... will try JDK1.1 reformulation...");
DecimalFormat fmt = new DecimalFormat("0.0000");
PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out"));
A.print(FILE, fmt, 10);
FILE.close();
R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out")));
if (A.minus(R).norm1() < .001) {
try_success("print()/read()...", "");
} else {
errorCount = try_failure(errorCount, "print()/read() (2nd attempt) ...", "Matrix read from file does not match Matrix printed to file");
}
} catch (java.io.IOException ioe) {
warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry");
}
}
R = Matrix.random(A.getRowDimension(), A.getColumnDimension());
String tmpname = "TMPMATRIX.serial";
try {
ObjectOutputStream out = new ObjectOutputStream(new FileOutputStream(tmpname));
out.writeObject(R);
ObjectInputStream sin = new ObjectInputStream(new FileInputStream(tmpname));
A = (Matrix) sin.readObject();
try {
check(A, R);
try_success("writeObject(Matrix)/readObject(Matrix)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "Matrix not serialized correctly");
}
} catch (java.io.IOException ioe) {
warningCount = try_warning(warningCount, "writeObject()/readObject()...", "unexpected I/O error, unable to run serialization test; check write permission in current directory and retry");
} catch (Exception e) {
errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "unexpected error in serialization test");
}
print("\nTesting linear algebra methods...\n");
A = new Matrix(columnwise, 3);
T = new Matrix(tvals);
T = A.transpose();
try {
check(A.transpose(), T);
try_success("transpose...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "transpose()...", "transpose unsuccessful");
}
A.transpose();
try {
check(A.norm1(), columnsummax);
try_success("norm1...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "norm1()...", "incorrect norm calculation");
}
try {
check(A.normInf(), rowsummax);
try_success("normInf()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "normInf()...", "incorrect norm calculation");
}
try {
check(A.normF(), Math.sqrt(sumofsquares));
try_success("normF...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "normF()...", "incorrect norm calculation");
}
try {
check(A.trace(), sumofdiagonals);
try_success("trace()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "trace()...", "incorrect trace calculation");
}
try {
check(A.getMatrix(0, A.getRowDimension() - 1, 0, A.getRowDimension() - 1).det(), 0.);
try_success("det()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "det()...", "incorrect determinant calculation");
}
SQ = new Matrix(square);
try {
check(A.times(A.transpose()), SQ);
try_success("times(Matrix)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "times(Matrix)...", "incorrect Matrix-Matrix product calculation");
}
try {
check(A.times(0.), Z);
try_success("times(double)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "times(double)...", "incorrect Matrix-scalar product calculation");
}
A = new Matrix(columnwise, 4);
QRDecomposition QR = A.qr();
R = QR.getR();
try {
check(A, QR.getQ().times(R));
try_success("QRDecomposition...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "QRDecomposition...", "incorrect QR decomposition calculation");
}
SingularValueDecomposition SVD = A.svd();
try {
check(A, SVD.getU().times(SVD.getS().times(SVD.getV().transpose())));
try_success("SingularValueDecomposition...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "SingularValueDecomposition...", "incorrect singular value decomposition calculation");
}
DEF = new Matrix(rankdef);
try {
check(DEF.rank(), Math.min(DEF.getRowDimension(), DEF.getColumnDimension()) - 1);
try_success("rank()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "rank()...", "incorrect rank calculation");
}
B = new Matrix(condmat);
SVD = B.svd();
double[] singularvalues = SVD.getSingularValues();
try {
check(B.cond(), singularvalues[0] / singularvalues[Math.min(B.getRowDimension(), B.getColumnDimension()) - 1]);
try_success("cond()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "cond()...", "incorrect condition number calculation");
}
int n = A.getColumnDimension();
A = A.getMatrix(0, n - 1, 0, n - 1);
A.set(0, 0, 0.);
LUDecomposition LU = A.lu();
try {
check(A.getMatrix(LU.getPivot(), 0, n - 1), LU.getL().times(LU.getU()));
try_success("LUDecomposition...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "LUDecomposition...", "incorrect LU decomposition calculation");
}
X = A.inverse();
try {
check(A.times(X), Matrix.identity(3, 3));
try_success("inverse()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "inverse()...", "incorrect inverse calculation");
}
O = new Matrix(SUB.getRowDimension(), 1, 1.0);
SOL = new Matrix(sqSolution);
SQ = SUB.getMatrix(0, SUB.getRowDimension() - 1, 0, SUB.getRowDimension() - 1);
try {
check(SQ.solve(SOL), O);
try_success("solve()...", "");
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "solve()...", e1.getMessage());
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "solve()...", e.getMessage());
}
A = new Matrix(pvals);
CholeskyDecomposition Chol = A.chol();
Matrix L = Chol.getL();
try {
check(A, L.times(L.transpose()));
try_success("CholeskyDecomposition...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "CholeskyDecomposition...", "incorrect Cholesky decomposition calculation");
}
X = Chol.solve(Matrix.identity(3, 3));
try {
check(A.times(X), Matrix.identity(3, 3));
try_success("CholeskyDecomposition solve()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "CholeskyDecomposition solve()...", "incorrect Choleskydecomposition solve calculation");
}
EigenvalueDecomposition Eig = A.eig();
Matrix D = Eig.getD();
Matrix V = Eig.getV();
try {
check(A.times(V), V.times(D));
try_success("EigenvalueDecomposition (symmetric)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "EigenvalueDecomposition (symmetric)...", "incorrect symmetric Eigenvalue decomposition calculation");
}
A = new Matrix(evals);
Eig = A.eig();
D = Eig.getD();
V = Eig.getV();
try {
check(A.times(V), V.times(D));
try_success("EigenvalueDecomposition (nonsymmetric)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "EigenvalueDecomposition (nonsymmetric)...", "incorrect nonsymmetric Eigenvalue decomposition calculation");
}
print("\nTestMatrix completed.\n");
print("Total errors reported: " + Integer.toString(errorCount) + "\n");
print("Total warnings reported: " + Integer.toString(warningCount) + "\n");
}
| false |
613 | 708,047 | 924,129 | public static void main(String args[]) {
try {
URL url = new URL("http://www.hungry.com/");
InputStream stream = url.openStream();
int size = 0;
while (-1 != stream.read()) {
size++;
}
stream.close();
System.out.println("PASSED: new URL() size=" + size);
} catch (Exception e) {
System.out.println("FAILED: " + e);
}
}
| public void run() {
try {
Debug.log("Integrity test", "Getting MD5 instance");
MessageDigest m = MessageDigest.getInstance("MD5");
Debug.log("Integrity test", "Creating URL " + target);
URL url = new URL(this.target);
Debug.log("Integrity test", "Setting up connection");
URLConnection urlConnection = url.openConnection();
InputStream in = urlConnection.getInputStream();
byte[] buffer = new byte[1024];
int numRead;
int fileSize = 0;
Debug.log("Integrity test", "Reading file");
while ((numRead = in.read(buffer)) != -1) {
m.update(buffer, 0, numRead);
fileSize += numRead;
}
in.close();
Debug.log("Integrity test", "File read: " + fileSize + " bytes");
Debug.log("Integrity test", "calculating Hash");
String fileHash = new BigInteger(1, m.digest()).toString(16);
if (fileHash.equals(this.hash)) {
Debug.log("Integrity test", "Test OK");
this.result.put("Integrity", "OK");
} else {
Debug.log("Integrity test", "Test failed: different hashes (" + fileHash + " but expected " + hash + ")");
this.result.put("Integrity", "FAIL");
}
} catch (Exception e) {
Debug.log("Integrity test", "Test failed");
this.result.put("Integrity", "FAIL");
}
}
| false |
614 | 5,828,731 | 14,341,903 | public static void resize(File originalFile, File resizedFile, int width, String format) throws IOException {
if (format != null && "gif".equals(format.toLowerCase())) {
resize(originalFile, resizedFile, width, 1);
return;
}
FileInputStream fis = new FileInputStream(originalFile);
ByteArrayOutputStream byteStream = new ByteArrayOutputStream();
int readLength = -1;
int bufferSize = 1024;
byte bytes[] = new byte[bufferSize];
while ((readLength = fis.read(bytes, 0, bufferSize)) != -1) {
byteStream.write(bytes, 0, readLength);
}
byte[] in = byteStream.toByteArray();
fis.close();
byteStream.close();
Image inputImage = Toolkit.getDefaultToolkit().createImage(in);
waitForImage(inputImage);
int imageWidth = inputImage.getWidth(null);
if (imageWidth < 1) throw new IllegalArgumentException("image width " + imageWidth + " is out of range");
int imageHeight = inputImage.getHeight(null);
if (imageHeight < 1) throw new IllegalArgumentException("image height " + imageHeight + " is out of range");
int height = -1;
double scaleW = (double) imageWidth / (double) width;
double scaleY = (double) imageHeight / (double) height;
if (scaleW >= 0 && scaleY >= 0) {
if (scaleW > scaleY) {
height = -1;
} else {
width = -1;
}
}
Image outputImage = inputImage.getScaledInstance(width, height, java.awt.Image.SCALE_DEFAULT);
checkImage(outputImage);
encode(new FileOutputStream(resizedFile), outputImage, format);
}
| private static void processFile(String file) throws IOException {
FileInputStream in = new FileInputStream(file);
int read = 0;
byte[] buf = new byte[2048];
ByteArrayOutputStream bout = new ByteArrayOutputStream();
while ((read = in.read(buf)) > 0) bout.write(buf, 0, read);
in.close();
String converted = bout.toString().replaceAll("@project.name@", projectNameS).replaceAll("@base.package@", basePackageS).replaceAll("@base.dir@", baseDir).replaceAll("@webapp.dir@", webAppDir).replaceAll("path=\"target/classes\"", "path=\"src/main/webapp/WEB-INF/classes\"");
FileOutputStream out = new FileOutputStream(file);
out.write(converted.getBytes());
out.close();
}
| true |
615 | 23,390,255 | 1,902,197 | public static void copyFile(File in, File out) throws IOException {
FileChannel inChannel = new FileInputStream(in).getChannel();
FileChannel outChannel = new FileOutputStream(out).getChannel();
try {
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (IOException e) {
throw e;
} finally {
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
}
}
| @Override
protected ResourceHandler doGet(final URI resourceUri) throws ResourceNotFoundException, ResourceException {
if (resourceUri.getHost() == null) {
throw new IllegalStateException(InternalBundleHelper.StoreMessageBundle.getMessage("store.uri.http.illegal", resourceUri.toString()));
}
try {
final URL configUrl = resourceUri.toURL();
final URLConnection urlConnection;
Proxy httpProxy = null;
if (!StringHelper.isEmpty(context.getString(FileStoreContextBuilder.ProxySet))) {
if (context.getBoolean(FileStoreContextBuilder.ProxySet)) {
final String proxyHost = context.getString(FileStoreContextBuilder.ProxyHost);
final String proxyPort = context.getString(FileStoreContextBuilder.ProxyPort);
if (!StringHelper.isEmpty(proxyHost)) {
httpProxy = new Proxy(Proxy.Type.HTTP, new InetSocketAddress(proxyHost, !StringHelper.isEmpty(proxyPort) ? Integer.parseInt(proxyPort) : 80));
if (!StringHelper.isEmpty(context.getString(FileStoreContextBuilder.NonProxyHosts))) {
System.getProperties().put("http.nonProxyHosts", context.getProperty(FileStoreContextBuilder.NonProxyHosts));
}
if (!StringHelper.isEmpty(context.getString(FileStoreContextBuilder.ProxyUser)) && !StringHelper.isEmpty(context.getString(FileStoreContextBuilder.ProxyPassword))) {
Authenticator.setDefault(new Authenticator() {
@Override
protected PasswordAuthentication getPasswordAuthentication() {
return new PasswordAuthentication(context.getString(FileStoreContextBuilder.ProxyUser), context.getString(FileStoreContextBuilder.ProxyPassword).toCharArray());
}
});
}
}
}
}
if (httpProxy == null) {
urlConnection = configUrl.openConnection();
} else {
urlConnection = configUrl.openConnection(httpProxy);
}
setUrlConnectionSettings(urlConnection);
urlConnection.connect();
try {
return createResourceHandler(resourceUri.toString(), urlConnection.getInputStream());
} catch (final FileNotFoundException fnfe) {
throw new ResourceNotFoundException(resourceUri.toString());
}
} catch (final MalformedURLException mure) {
throw new IllegalStateException(InternalBundleHelper.StoreMessageBundle.getMessage("store.uri.malformed", resourceUri.toString()));
} catch (final ConnectException ce) {
throw new ResourceException("store.connection.error", ce, resourceUri.toString());
} catch (final IOException ioe) {
if (ioe instanceof ResourceException) {
throw (ResourceException) ioe;
} else {
throw new ResourceException(ioe, resourceUri.toString());
}
}
}
| false |
616 | 19,747,820 | 16,870,490 | public String parse(String term) throws OntologyAdaptorException {
try {
String sUrl = getUrl(term);
if (sUrl.length() > 0) {
URL url = new URL(sUrl);
InputStream in = url.openStream();
StringBuilder sb = new StringBuilder();
BufferedReader r = new BufferedReader(new InputStreamReader(in));
String line = null;
while ((line = r.readLine()) != null) {
if (sb.length() > 0) {
sb.append("\r\n");
}
sb.append(line);
}
return sb.toString();
} else {
return "";
}
} catch (Exception ex) {
throw new OntologyAdaptorException("Convertion to lucene failed.", ex);
}
}
| private List parseUrlGetUids(String url) throws FetchError {
List hids = new ArrayList();
try {
InputStream is = (new URL(url)).openStream();
BufferedReader in = new BufferedReader(new InputStreamReader(is));
StringBuffer buffer = new StringBuffer();
String inputLine = "";
Pattern pattern = Pattern.compile("\\<input\\s+type=hidden\\s+name=hid\\s+value=(\\d+)\\s?\\>", Pattern.CASE_INSENSITIVE);
while ((inputLine = in.readLine()) != null) {
Matcher matcher = pattern.matcher(inputLine);
if (matcher.find()) {
String id = matcher.group(1);
if (!hids.contains(id)) {
hids.add(id);
}
}
}
} catch (Exception e) {
System.out.println(e);
throw new FetchError(e);
}
return hids;
}
| true |
617 | 13,862,028 | 3,667,135 | public static void main(String[] args) {
try {
String completePath = null;
String predictionFileName = null;
if (args.length == 2) {
completePath = args[0];
predictionFileName = args[1];
} else {
System.out.println("Please provide complete path to training_set parent folder as an argument. EXITING");
System.exit(0);
}
File inputFile = new File(completePath + fSep + "SmartGRAPE" + fSep + MovieIndexFileName);
FileChannel inC = new FileInputStream(inputFile).getChannel();
int filesize = (int) inC.size();
ByteBuffer mappedfile = inC.map(FileChannel.MapMode.READ_ONLY, 0, filesize);
MovieLimitsTHash = new TShortObjectHashMap(17770, 1);
int i = 0, totalcount = 0;
short movie;
int startIndex, endIndex;
TIntArrayList a;
while (mappedfile.hasRemaining()) {
movie = mappedfile.getShort();
startIndex = mappedfile.getInt();
endIndex = mappedfile.getInt();
a = new TIntArrayList(2);
a.add(startIndex);
a.add(endIndex);
MovieLimitsTHash.put(movie, a);
}
inC.close();
mappedfile = null;
System.out.println("Loaded movie index hash");
inputFile = new File(completePath + fSep + "SmartGRAPE" + fSep + CustIndexFileName);
inC = new FileInputStream(inputFile).getChannel();
filesize = (int) inC.size();
mappedfile = inC.map(FileChannel.MapMode.READ_ONLY, 0, filesize);
CustomerLimitsTHash = new TIntObjectHashMap(480189, 1);
int custid;
while (mappedfile.hasRemaining()) {
custid = mappedfile.getInt();
startIndex = mappedfile.getInt();
endIndex = mappedfile.getInt();
a = new TIntArrayList(2);
a.add(startIndex);
a.add(endIndex);
CustomerLimitsTHash.put(custid, a);
}
inC.close();
mappedfile = null;
System.out.println("Loaded customer index hash");
MoviesAndRatingsPerCustomer = InitializeMovieRatingsForCustomerHashMap(completePath, CustomerLimitsTHash);
System.out.println("Populated MoviesAndRatingsPerCustomer hashmap");
File outfile = new File(completePath + fSep + "SmartGRAPE" + fSep + predictionFileName);
FileChannel out = new FileOutputStream(outfile, true).getChannel();
inputFile = new File(completePath + fSep + "SmartGRAPE" + fSep + "formattedProbeData.txt");
inC = new FileInputStream(inputFile).getChannel();
filesize = (int) inC.size();
ByteBuffer probemappedfile = inC.map(FileChannel.MapMode.READ_ONLY, 0, filesize);
int custAndRatingSize = 0;
TIntByteHashMap custsandratings = new TIntByteHashMap();
int ignoreProcessedRows = 0;
int movieViewershipSize = 0;
while (probemappedfile.hasRemaining()) {
short testmovie = probemappedfile.getShort();
int testCustomer = probemappedfile.getInt();
if ((CustomersAndRatingsPerMovie != null) && (CustomersAndRatingsPerMovie.containsKey(testmovie))) {
} else {
CustomersAndRatingsPerMovie = InitializeCustomerRatingsForMovieHashMap(completePath, testmovie);
custsandratings = (TIntByteHashMap) CustomersAndRatingsPerMovie.get(testmovie);
custAndRatingSize = custsandratings.size();
}
TShortByteHashMap testCustMovieAndRatingsMap = (TShortByteHashMap) MoviesAndRatingsPerCustomer.get(testCustomer);
short[] testCustMovies = testCustMovieAndRatingsMap.keys();
float finalPrediction = 0;
finalPrediction = predictRating(testCustomer, testmovie, custsandratings, custAndRatingSize, testCustMovies, testCustMovieAndRatingsMap);
System.out.println("prediction for movie: " + testmovie + " for customer " + testCustomer + " is " + finalPrediction);
ByteBuffer buf = ByteBuffer.allocate(11);
buf.putShort(testmovie);
buf.putInt(testCustomer);
buf.putFloat(finalPrediction);
buf.flip();
out.write(buf);
buf = null;
testCustMovieAndRatingsMap = null;
testCustMovies = null;
}
} catch (Exception e) {
e.printStackTrace();
}
}
| public void fileCopy(File inFile, File outFile) {
try {
FileInputStream in = new FileInputStream(inFile);
FileOutputStream out = new FileOutputStream(outFile);
int c;
while ((c = in.read()) != -1) out.write(c);
in.close();
out.close();
} catch (IOException e) {
System.err.println("Hubo un error de entrada/salida!!!");
}
}
| true |
618 | 9,632,240 | 206,397 | private final boolean copy_to_file_nio(File src, File dst) throws IOException {
FileChannel srcChannel = null, dstChannel = null;
try {
srcChannel = new FileInputStream(src).getChannel();
dstChannel = new FileOutputStream(dst).getChannel();
{
int safe_max = (64 * 1024 * 1024) / 4;
long size = srcChannel.size();
long position = 0;
while (position < size) {
position += srcChannel.transferTo(position, safe_max, dstChannel);
}
}
return true;
} finally {
try {
if (srcChannel != null) srcChannel.close();
} catch (IOException e) {
Debug.debug(e);
}
try {
if (dstChannel != null) dstChannel.close();
} catch (IOException e) {
Debug.debug(e);
}
}
}
| public static void doVersionCheck(View view) {
view.showWaitCursor();
try {
URL url = new URL(jEdit.getProperty("version-check.url"));
InputStream in = url.openStream();
BufferedReader bin = new BufferedReader(new InputStreamReader(in));
String line;
String version = null;
String build = null;
while ((line = bin.readLine()) != null) {
if (line.startsWith(".version")) version = line.substring(8).trim(); else if (line.startsWith(".build")) build = line.substring(6).trim();
}
bin.close();
if (version != null && build != null) {
if (jEdit.getBuild().compareTo(build) < 0) newVersionAvailable(view, version, url); else {
GUIUtilities.message(view, "version-check" + ".up-to-date", new String[0]);
}
}
} catch (IOException e) {
String[] args = { jEdit.getProperty("version-check.url"), e.toString() };
GUIUtilities.error(view, "read-error", args);
}
view.hideWaitCursor();
}
| false |
619 | 14,247,203 | 2,614,788 | private Reader getReader(String uri, Query query) throws SourceException {
if (OntoramaConfig.DEBUG) {
System.out.println("uri = " + uri);
}
InputStreamReader reader = null;
try {
System.out.println("class UrlSource, uri = " + uri);
URL url = new URL(uri);
URLConnection connection = url.openConnection();
reader = new InputStreamReader(connection.getInputStream());
} catch (MalformedURLException urlExc) {
throw new SourceException("Url " + uri + " specified for this ontology source is not well formed, error: " + urlExc.getMessage());
} catch (IOException ioExc) {
throw new SourceException("Couldn't read input data source for " + uri + ", error: " + ioExc.getMessage());
}
return reader;
}
| public String parse() {
try {
URL url = new URL(mUrl);
HttpURLConnection connection = (HttpURLConnection) url.openConnection();
connection.setRequestMethod("GET");
connection.setDoOutput(true);
connection.connect();
BufferedReader reader = new BufferedReader(new InputStreamReader(connection.getInputStream()));
String line;
boolean flag1 = false;
while ((line = reader.readLine()) != null) {
line = line.trim();
if (!flag1 && line.contains("</center>")) flag1 = true;
if (flag1 && line.contains("<br><center>")) break;
if (flag1) {
mText.append(line);
}
}
} catch (MalformedURLException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
return mText.toString();
}
| false |
620 | 1,035,597 | 1,158,842 | private Concept fetchDataNeeded(String conceptUri) {
if (cache.size() > MAX_CACHE) cache.clear();
if (cache.containsKey(conceptUri)) return this.cache.get(conceptUri);
try {
URL url = new URL(conceptUri);
HttpURLConnection connection = (HttpURLConnection) url.openConnection();
connection.setInstanceFollowRedirects(true);
connection.setRequestProperty("Accept", "application/rdf+xml");
if (connection.getResponseCode() == HttpURLConnection.HTTP_OK && connection.getContentType().contains("application/rdf+xml")) {
InputStream is = connection.getInputStream();
HashMap<String, String> parameters = new HashMap<String, String>();
parameters.put("uri", conceptUri);
Transformer tf = this.templates.getDAOTransformer(keyTemplates, parameters);
DOMResult outputTarget = new DOMResult();
tf.transform(new StreamSource(is), outputTarget);
Concept concept = ConceptXMLBind.getInstance().restoreConcept(outputTarget.getNode());
this.cache.put(conceptUri, concept);
return concept;
} else {
logger.error("Unable to get a representation of the resource: " + connection.getResponseCode() + " => " + connection.getContentType());
throw new RuntimeException("Unable to get a representation of the resource");
}
} catch (Exception e) {
logger.error("Unable to fetch data for concept " + conceptUri, e);
throw new RuntimeException(e);
}
}
| public static int unzipFile(File file_input, File dir_output) {
ZipInputStream zip_in_stream;
try {
FileInputStream in = new FileInputStream(file_input);
BufferedInputStream source = new BufferedInputStream(in);
zip_in_stream = new ZipInputStream(source);
} catch (IOException e) {
return STATUS_IN_FAIL;
}
byte[] input_buffer = new byte[BUF_SIZE];
int len = 0;
do {
try {
ZipEntry zip_entry = zip_in_stream.getNextEntry();
if (zip_entry == null) break;
File output_file = new File(dir_output, zip_entry.getName());
FileOutputStream out = new FileOutputStream(output_file);
BufferedOutputStream destination = new BufferedOutputStream(out, BUF_SIZE);
while ((len = zip_in_stream.read(input_buffer, 0, BUF_SIZE)) != -1) destination.write(input_buffer, 0, len);
destination.flush();
out.close();
} catch (IOException e) {
return STATUS_GUNZIP_FAIL;
}
} while (true);
try {
zip_in_stream.close();
} catch (IOException e) {
}
return STATUS_OK;
}
| false |
621 | 19,565,153 | 16,351,775 | private void copy(File fin, File fout) throws IOException {
FileOutputStream out = new FileOutputStream(fout);
FileInputStream in = new FileInputStream(fin);
byte[] buf = new byte[2048];
int read = in.read(buf);
while (read > 0) {
out.write(buf, 0, read);
read = in.read(buf);
}
in.close();
out.close();
}
| public static boolean encodeFileToFile(String infile, String outfile) {
boolean success = false;
java.io.InputStream in = null;
java.io.OutputStream out = null;
try {
in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE);
out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile));
byte[] buffer = new byte[65536];
int read = -1;
while ((read = in.read(buffer)) >= 0) {
out.write(buffer, 0, read);
}
success = true;
} catch (java.io.IOException exc) {
exc.printStackTrace();
} finally {
try {
in.close();
} catch (Exception exc) {
}
try {
out.close();
} catch (Exception exc) {
}
}
return success;
}
| true |
622 | 11,896,430 | 20,983,672 | protected InputStream createIconType(HttpServletRequest req, HttpServletResponse res) throws ServletException, IOException {
JavaliController.debug(JavaliController.LG_VERBOSE, "Creating iconType");
String cHash = PRM_TYPE + "=" + TP_ICON;
String iconName = req.getParameter("iconName");
if (iconName == null) {
res.sendError(res.SC_NOT_FOUND);
return null;
}
Locale loc = null;
HttpSession sess = req.getSession(false);
JavaliSession jsess = null;
int menuType = -1;
String menuTypeString = req.getParameter(PRM_MENU_TYPE);
try {
menuType = new Integer(menuTypeString).intValue();
} catch (Exception e) {
}
if (sess != null) jsess = (JavaliSession) sess.getAttribute(FormConstants.SESSION_BINDING);
if (jsess != null && jsess.getUser() != null) loc = jsess.getUser().getLocale(); else if (sess != null) loc = (Locale) sess.getAttribute(FormConstants.LOCALE_BINDING);
if (loc == null) loc = Locale.getDefault();
if (menuType == -1) menuType = MENU_TYPE_TEXTICON;
String iconText = JavaliResource.getString("icon." + iconName, loc);
if (iconText == null) {
iconText = req.getParameter(PRM_MENU_NAME);
if (iconText == null) iconText = "";
}
cHash += ", " + PRM_ICON_NAME + "=" + iconName + ", text=" + iconText + ", menuType=" + menuType;
String iconFileName = null;
String fontName = req.getParameter(PRM_FONT_NAME);
if (fontName == null) {
fontName = "Helvetica";
}
cHash += "," + PRM_FONT_NAME + "=" + fontName;
String fontSizeString = req.getParameter(PRM_FONT_SIZE);
int fontSize;
try {
fontSize = Integer.parseInt(fontSizeString);
} catch (NumberFormatException nfe) {
fontSize = 12;
}
cHash += "," + PRM_FONT_SIZE + "=" + fontSize;
String fontTypeString = req.getParameter(PRM_FONT_TYPE);
int fontType = Font.BOLD;
if ("PLAIN".equalsIgnoreCase(fontTypeString)) fontType = Font.PLAIN;
if ("BOLD".equalsIgnoreCase(fontTypeString)) fontType = Font.BOLD;
if ("ITALIC".equalsIgnoreCase(fontTypeString)) fontType = Font.ITALIC;
if ("ITALICBOLD".equalsIgnoreCase(fontTypeString) || "BOLDITALIC".equalsIgnoreCase(fontTypeString) || "BOLD_ITALIC".equalsIgnoreCase(fontTypeString) || "ITALIC_BOLD".equalsIgnoreCase(fontTypeString)) {
fontType = Font.ITALIC | Font.BOLD;
}
cHash += "," + PRM_FONT_TYPE + "=" + fontType;
String fontColor = req.getParameter(PRM_FONT_COLOR);
if (fontColor == null || fontColor.equals("")) fontColor = "0x000000";
cHash += "," + PRM_FONT_COLOR + "=" + fontColor;
String fName = cacheInfo.file(cHash);
JavaliController.debug(JavaliController.LG_VERBOSE, "Called for: " + fName);
if (fName == null) {
JavaliController.debug(JavaliController.LG_VERBOSE, "No cache found for: " + cHash);
if (getServletConfig() != null && getServletConfig().getServletContext() != null) {
if (iconName != null && iconName.startsWith("/")) iconFileName = getServletConfig().getServletContext().getRealPath(iconName + ".gif"); else iconFileName = getServletConfig().getServletContext().getRealPath("/icons/" + iconName + ".gif");
File iconFile = new File(iconFileName);
if (!iconFile.exists()) {
JavaliController.debug(JavaliController.LG_VERBOSE, "Could not find: " + iconFileName);
res.sendError(res.SC_NOT_FOUND);
return null;
}
iconFileName = iconFile.getAbsolutePath();
JavaliController.debug(JavaliController.LG_VERBOSE, "file: " + iconFileName + " and cHash=" + cHash);
} else {
JavaliController.debug(JavaliController.LG_VERBOSE, "No ServletConfig=" + getServletConfig() + " or servletContext");
res.sendError(res.SC_NOT_FOUND);
return null;
}
File tmp = File.createTempFile(PREFIX, SUFIX, cacheDir);
OutputStream out = new FileOutputStream(tmp);
if (menuType == MENU_TYPE_ICON) {
FileInputStream in = new FileInputStream(iconFileName);
byte buf[] = new byte[2048];
int read = -1;
while ((read = in.read(buf)) != -1) out.write(buf, 0, read);
} else if (menuType == MENU_TYPE_TEXT) MessageImage.sendAsGIF(MessageImage.makeMessageImage(iconText, fontName, fontSize, fontType, fontColor, false, "0x000000", true), out); else MessageImage.sendAsGIF(MessageImage.makeIconImage(iconFileName, iconText, fontName, fontColor, fontSize, fontType), out);
out.close();
cacheInfo.putFile(cHash, tmp);
fName = cacheInfo.file(cHash);
}
return new FileInputStream(new File(cacheDir, fName));
}
| public void sendResponse(DjdocRequest req, HttpServletResponse res) throws IOException {
File file = (File) req.getResult();
InputStream in = null;
try {
in = new FileInputStream(file);
IOUtils.copy(in, res.getOutputStream());
} finally {
if (in != null) {
in.close();
}
}
}
| true |
623 | 13,120,648 | 21,715,891 | @Override
protected void doGet(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
String arg = req.getParameter("file");
if (arg == null) {
resp.sendError(404, "Missing 'file' Arg");
return;
}
int mfid = NumberUtils.toInt(arg);
Object sageFile = MediaFileAPI.GetMediaFileForID(mfid);
if (sageFile == null) {
resp.sendError(404, "Sage File not found " + mfid);
return;
}
int seconds = NumberUtils.toInt(req.getParameter("ss"), -1);
long offset = NumberUtils.toLong(req.getParameter("sb"), -1);
if (seconds < 0 && offset < 0) {
resp.sendError(501, "Missing 'ss' or 'sb' args");
return;
}
int width = NumberUtils.toInt(req.getParameter("w"), 320);
int height = NumberUtils.toInt(req.getParameter("h"), 320);
File dir = new File(Phoenix.getInstance().getUserCacheDir(), "videothumb/" + mfid);
if (!dir.exists()) {
dir.mkdirs();
}
String prefix = "";
if (offset > 0) {
prefix = "O" + offset;
} else {
prefix = "S" + seconds;
}
File f = new File(dir, prefix + "_" + width + "_" + height + ".jpg").getCanonicalFile();
if (!f.exists()) {
try {
generateThumbnailNew(sageFile, f, seconds, offset, width, height);
} catch (Exception e) {
e.printStackTrace();
resp.sendError(503, "Failed to generate thumbnail\n " + e.getMessage());
return;
}
}
if (!f.exists()) {
resp.sendError(404, "Missing File: " + f);
return;
}
resp.setContentType("image/jpeg");
resp.setContentLength((int) f.length());
FileInputStream fis = null;
try {
fis = new FileInputStream(f);
OutputStream os = resp.getOutputStream();
IOUtils.copyLarge(fis, os);
os.flush();
fis.close();
} catch (Throwable e) {
log.error("Failed to send file: " + f);
resp.sendError(500, "Failed to get file " + f);
} finally {
IOUtils.closeQuietly(fis);
}
}
| protected void copy(File src, File dest) throws IOException {
if (src.isDirectory() && dest.isFile()) throw new IOException("Cannot copy a directory to a file");
if (src.isDirectory()) {
File newDir = new File(dest, src.getName());
if (!newDir.mkdirs()) throw new IOException("Cannot create a new Directory");
File[] entries = src.listFiles();
for (int i = 0; i < entries.length; ++i) copy(entries[i], newDir);
return;
}
if (dest.isDirectory()) {
File newFile = new File(dest, src.getName());
newFile.createNewFile();
copy(src, newFile);
return;
}
try {
if (src.length() == 0) {
dest.createNewFile();
return;
}
FileChannel fc = new FileInputStream(src).getChannel();
FileChannel dstChannel = new FileOutputStream(dest).getChannel();
long transfered = 0;
long totalLength = src.length();
while (transfered < totalLength) {
long num = fc.transferTo(transfered, totalLength - transfered, dstChannel);
if (num == 0) throw new IOException("Error while copying");
transfered += num;
}
dstChannel.close();
fc.close();
} catch (IOException e) {
if (os.equals("Unix")) {
_logger.fine("Trying to use cp to copy file...");
File cp = new File("/usr/bin/cp");
if (!cp.exists()) cp = new File("/bin/cp");
if (!cp.exists()) cp = new File("/usr/local/bin/cp");
if (!cp.exists()) cp = new File("/sbin/cp");
if (!cp.exists()) cp = new File("/usr/sbin/cp");
if (!cp.exists()) cp = new File("/usr/local/sbin/cp");
if (cp.exists()) {
Process cpProcess = Runtime.getRuntime().exec(cp.getAbsolutePath() + " '" + src.getAbsolutePath() + "' '" + dest.getAbsolutePath() + "'");
int errCode;
try {
errCode = cpProcess.waitFor();
} catch (java.lang.InterruptedException ie) {
throw e;
}
return;
}
}
throw e;
}
}
| true |
624 | 3,788,596 | 16,008,963 | public static boolean copyFile(final File fileFrom, final File fileTo) {
assert fileFrom != null : "fileFrom is null";
assert fileTo != null : "fileTo is null";
LOGGER.info(buildLogString(COPY_FILE_INFO, new Object[] { fileFrom, fileTo }));
boolean error = true;
FileInputStream inputStream = null;
FileOutputStream outputStream = null;
try {
inputStream = new FileInputStream(fileFrom);
outputStream = new FileOutputStream(fileTo);
final FileChannel inChannel = inputStream.getChannel();
final FileChannel outChannel = outputStream.getChannel();
inChannel.transferTo(0, inChannel.size(), outChannel);
error = false;
} catch (final IOException e) {
LOGGER.log(SEVERE, buildLogString(COPY_FILE_ERROR, new Object[] { fileFrom, fileTo }), e);
} finally {
closeCloseable(inputStream, fileFrom);
closeCloseable(outputStream, fileTo);
}
return error;
}
| public static void unzip(final File file, final ZipFile zipFile, final File targetDirectory) throws PtException {
LOG.info("Unzipping zip file '" + file.getAbsolutePath() + "' to directory " + "'" + targetDirectory.getAbsolutePath() + "'.");
assert (file.exists() && file.isFile());
if (targetDirectory.exists() == false) {
LOG.debug("Creating target directory.");
if (targetDirectory.mkdirs() == false) {
throw new PtException("Could not create target directory at " + "'" + targetDirectory.getAbsolutePath() + "'!");
}
}
ZipInputStream zipin = null;
try {
zipin = new ZipInputStream(new FileInputStream(file));
ZipEntry nextZipEntry = zipin.getNextEntry();
while (nextZipEntry != null) {
LOG.debug("Unzipping entry '" + nextZipEntry.getName() + "'.");
if (nextZipEntry.isDirectory()) {
LOG.debug("Skipping directory.");
continue;
}
final File targetFile = new File(targetDirectory, nextZipEntry.getName());
final File parentTargetFile = targetFile.getParentFile();
if (parentTargetFile.exists() == false) {
LOG.debug("Creating directory '" + parentTargetFile.getAbsolutePath() + "'.");
if (parentTargetFile.mkdirs() == false) {
throw new PtException("Could not create target directory at " + "'" + parentTargetFile.getAbsolutePath() + "'!");
}
}
InputStream input = null;
FileOutputStream output = null;
try {
input = zipFile.getInputStream(nextZipEntry);
if (targetFile.createNewFile() == false) {
throw new PtException("Could not create target file " + "'" + targetFile.getAbsolutePath() + "'!");
}
output = new FileOutputStream(targetFile);
byte[] buffer = new byte[BUFFER_SIZE];
int readBytes = input.read(buffer, 0, buffer.length);
while (readBytes > 0) {
output.write(buffer, 0, readBytes);
readBytes = input.read(buffer, 0, buffer.length);
}
} finally {
PtCloseUtil.close(input, output);
}
nextZipEntry = zipin.getNextEntry();
}
} catch (IOException e) {
throw new PtException("Could not unzip file '" + file.getAbsolutePath() + "'!", e);
} finally {
PtCloseUtil.close(zipin);
}
}
| true |
625 | 11,322,573 | 21,511,914 | private void preprocessObjects(GeoObject[] objects) throws IOException {
System.out.println("objects.length " + objects.length);
for (int i = 0; i < objects.length; i++) {
String fileName = objects[i].getPath();
int dotindex = fileName.lastIndexOf(".");
dotindex = dotindex < 0 ? 0 : dotindex;
String tmp = dotindex < 1 ? fileName : fileName.substring(0, dotindex + 3) + "w";
System.out.println("i: " + " world filename " + tmp);
File worldFile = new File(tmp);
if (worldFile.exists()) {
BufferedReader worldFileReader = new BufferedReader(new InputStreamReader(new FileInputStream(worldFile)));
if (staticDebugOn) debug("b4nextline: ");
line = worldFileReader.readLine();
if (staticDebugOn) debug("line: " + line);
if (line != null) {
line = worldFileReader.readLine();
if (staticDebugOn) debug("line: " + line);
tokenizer = new StringTokenizer(line, " \n\t\r\"", false);
objects[i].setLon(Double.valueOf(tokenizer.nextToken()).doubleValue());
line = worldFileReader.readLine();
if (staticDebugOn) debug("line: " + line);
tokenizer = new StringTokenizer(line, " \n\t\r\"", false);
objects[i].setLat(Double.valueOf(tokenizer.nextToken()).doubleValue());
}
}
File file = new File(objects[i].getPath());
if (file.exists()) {
System.out.println("object src file found ");
int slashindex = fileName.lastIndexOf(java.io.File.separator);
slashindex = slashindex < 0 ? 0 : slashindex;
if (slashindex == 0) {
slashindex = fileName.lastIndexOf("/");
slashindex = slashindex < 0 ? 0 : slashindex;
}
tmp = slashindex < 1 ? fileName : fileName.substring(slashindex + 1, fileName.length());
System.out.println("filename " + destinationDirectory + XPlat.fileSep + tmp);
objects[i].setPath(tmp);
file = new File(fileName);
if (file.exists()) {
DataInputStream dataIn = new DataInputStream(new BufferedInputStream(new FileInputStream(fileName)));
DataOutputStream dataOut = new DataOutputStream(new BufferedOutputStream(new FileOutputStream(destinationDirectory + XPlat.fileSep + tmp)));
System.out.println("copying to " + destinationDirectory + XPlat.fileSep + tmp);
for (; ; ) {
try {
dataOut.writeShort(dataIn.readShort());
} catch (EOFException e) {
break;
} catch (IOException e) {
break;
}
}
dataOut.close();
}
}
}
}
| public static synchronized String getPageContent(String pageUrl) {
URL url = null;
InputStreamReader inputStreamReader = null;
BufferedReader bufferedReader = null;
String line = null;
StringBuilder page = null;
if (pageUrl == null || pageUrl.trim().length() == 0) {
return null;
} else {
try {
url = new URL(pageUrl);
inputStreamReader = new InputStreamReader(url.openStream());
bufferedReader = new BufferedReader(inputStreamReader);
page = new StringBuilder();
while ((line = bufferedReader.readLine()) != null) {
page.append(line);
page.append("\n");
}
} catch (IOException e) {
logger.error("IOException", e);
} catch (Exception e) {
logger.error("Exception", e);
} finally {
try {
if (bufferedReader != null) {
bufferedReader.close();
}
if (inputStreamReader != null) {
inputStreamReader.close();
}
} catch (IOException e) {
logger.error("IOException", e);
} catch (Exception e) {
logger.error("Exception", e);
}
}
}
if (page == null) {
return null;
} else {
return page.toString();
}
}
| false |
626 | 8,212,984 | 12,122,713 | private void readCard() {
try {
final String urlString = createURLStringExistRESTGetXQuery("//scheda[cata = \"" + cata + "\"]");
InputStream inputStream = new URL(urlString).openStream();
uiSchedaXml.read(inputStream);
inputStream.close();
} catch (MalformedURLException e) {
System.out.println(e);
} catch (IOException e) {
System.out.println(e);
}
}
| private void readVersion() {
URL url = ClassLoader.getSystemResource("version");
if (url == null) {
return;
}
BufferedReader reader = null;
String line = null;
try {
reader = new BufferedReader(new InputStreamReader(url.openStream()));
while ((line = reader.readLine()) != null) {
if (line.startsWith("Version=")) {
version = (line.split("="))[1];
}
if (line.startsWith("Revision=")) {
revision = (line.split("="))[1];
}
if (line.startsWith("Date=")) {
String sSec = (line.split("="))[1];
Long lSec = Long.valueOf(sSec);
compileDate = new Date(lSec);
}
}
} catch (IOException e) {
e.printStackTrace();
} finally {
if (reader != null) {
try {
reader.close();
} catch (IOException e) {
e.printStackTrace();
}
}
}
return;
}
| false |
627 | 21,823,682 | 10,480,051 | @SuppressWarnings("unchecked")
protected void displayFreeMarkerResponse(HttpServletRequest request, HttpServletResponse response, String templateName, Map<String, Object> variableMap) throws IOException {
Enumeration<String> attrNameEnum = request.getSession().getAttributeNames();
String attrName;
while (attrNameEnum.hasMoreElements()) {
attrName = attrNameEnum.nextElement();
if (attrName != null && attrName.startsWith(ADMIN4J_SESSION_VARIABLE_PREFIX)) {
variableMap.put("Session" + attrName, request.getSession().getAttribute(attrName));
}
}
variableMap.put("RequestAdmin4jCurrentUri", request.getRequestURI());
Template temp = FreemarkerUtils.createConfiguredTemplate(this.getClass(), templateName);
ByteArrayOutputStream outStream = new ByteArrayOutputStream();
try {
temp.process(variableMap, new OutputStreamWriter(outStream));
response.setContentLength(outStream.size());
IOUtils.copy(new ByteArrayInputStream(outStream.toByteArray()), response.getOutputStream());
response.getOutputStream().flush();
response.getOutputStream().close();
} catch (Exception e) {
throw new Admin4jRuntimeException(e);
}
}
| public static RecordResponse loadRecord(RecordRequest recordRequest) {
RecordResponse recordResponse = new RecordResponse();
try {
DefaultHttpClient httpClient = new DefaultHttpClient();
HttpPost httpPost = new HttpPost(recordRequest.isContact() ? URL_RECORD_CONTACT : URL_RECORD_COMPANY);
List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(6);
nameValuePairs.add(new BasicNameValuePair("format", "xml"));
nameValuePairs.add(new BasicNameValuePair("token", recordRequest.getToken()));
nameValuePairs.add(new BasicNameValuePair("id", recordRequest.getId()));
httpPost.setEntity(new UrlEncodedFormEntity(nameValuePairs));
httpPost.setEntity(new UrlEncodedFormEntity(nameValuePairs));
HttpResponse response = httpClient.execute(httpPost);
String line = EntityUtils.toString(response.getEntity());
Document document = XMLfunctions.XMLfromString(line);
NodeList nodes = document.getElementsByTagName("response");
Element e = (Element) nodes.item(0);
String Name__Last__First_ = XMLfunctions.getValue(e, recordRequest.isContact() ? "Name__Last__First_" : "Name");
String phone = "";
if (!recordRequest.isContact()) phone = XMLfunctions.getValue(e, "Phone");
String Email1 = XMLfunctions.getValue(e, recordRequest.isContact() ? "Personal_Email" : "Email");
String Home_Fax = XMLfunctions.getValue(e, recordRequest.isContact() ? "Home_Fax" : "Fax1");
String Address1 = XMLfunctions.getValue(e, "Address1");
String Address2 = XMLfunctions.getValue(e, "Address2");
String City = XMLfunctions.getValue(e, "City");
String State = XMLfunctions.getValue(e, "State");
String Zip = XMLfunctions.getValue(e, "Zip");
String Country = XMLfunctions.getValue(e, "Country");
String Profile = XMLfunctions.getValue(e, "Profile");
String success = XMLfunctions.getValue(e, "success");
String error = XMLfunctions.getValue(e, "error");
recordResponse.setName(Name__Last__First_);
recordResponse.setPhone(phone);
recordResponse.setEmail(Email1);
recordResponse.setHomeFax(Home_Fax);
recordResponse.setAddress1(Address1);
recordResponse.setAddress2(Address2);
recordResponse.setCity(City);
recordResponse.setState(State);
recordResponse.setZip(Zip);
recordResponse.setProfile(Profile);
recordResponse.setCountry(Country);
recordResponse.setSuccess(success);
recordResponse.setError(error);
} catch (Exception e) {
}
return recordResponse;
}
| false |
628 | 1,113,240 | 21,374,041 | public RemotePolicyMigrator createRemotePolicyMigrator() {
return new RemotePolicyMigrator() {
public String migratePolicy(InputStream stream, String url) throws ResourceMigrationException, IOException {
ByteArrayOutputCreator oc = new ByteArrayOutputCreator();
IOUtils.copyAndClose(stream, oc.getOutputStream());
return oc.getOutputStream().toString();
}
};
}
| public void writeToStream(OutputStream out) throws IOException {
InputStream result = null;
if (tempFile != null) {
InputStream input = new BufferedInputStream(new FileInputStream(tempFile));
IOUtils.copy(input, out);
IOUtils.closeQuietly(input);
} else if (tempBuffer != null) {
out.write(tempBuffer);
}
}
| true |
629 | 16,287,068 | 16,280,341 | public OAuthResponseMessage access(OAuthMessage request, net.oauth.ParameterStyle style) throws IOException {
HttpMessage httpRequest = HttpMessage.newRequest(request, style);
HttpResponseMessage httpResponse = http.execute(httpRequest, httpParameters);
httpResponse = HttpMessageDecoder.decode(httpResponse);
return new OAuthResponseMessage(httpResponse);
}
| private void mergeInDefaultMenuItemActionPerformed(java.awt.event.ActionEvent evt) {
try {
String surl = AutoplotUtil.getProperty("autoplot.default.bookmarks", "http://www.autoplot.org/data/demos.xml");
URL url = new URL(surl);
Document doc = AutoplotUtil.readDoc(url.openStream());
List<Bookmark> importBook = Bookmark.parseBookmarks(doc.getDocumentElement());
List<Bookmark> newList = new ArrayList(model.list.size());
for (int i = 0; i < model.list.size(); i++) {
newList.add(i, model.list.get(i).copy());
}
model.mergeList(importBook, newList);
model.setList(newList);
formatToFile(bookmarksFile);
} catch (SAXException ex) {
logger.log(Level.SEVERE, null, ex);
} catch (IOException ex) {
logger.log(Level.SEVERE, null, ex);
} catch (ParserConfigurationException ex) {
logger.log(Level.SEVERE, null, ex);
}
}
| false |
630 | 3,298,289 | 21,461,424 | public static String move_tags(String sessionid, String absolutePathForTheMovedTags, String absolutePathForTheDestinationTag) {
String resultJsonString = "some problem existed inside the create_new_tag() function if you see this string";
try {
Log.d("current running function name:", "move_tags");
HttpClient httpclient = new DefaultHttpClient();
HttpPost httppost = new HttpPost("https://mt0-app.cloud.cm/rpc/json");
List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(2);
nameValuePairs.add(new BasicNameValuePair("c", "Storage"));
nameValuePairs.add(new BasicNameValuePair("m", "move_tag"));
nameValuePairs.add(new BasicNameValuePair("absolute_new_parent_tag", absolutePathForTheDestinationTag));
nameValuePairs.add(new BasicNameValuePair("absolute_tags", absolutePathForTheMovedTags));
httppost.setEntity(new UrlEncodedFormEntity(nameValuePairs));
httppost.setHeader("Cookie", "PHPSESSID=" + sessionid);
HttpResponse response = httpclient.execute(httppost);
resultJsonString = EntityUtils.toString(response.getEntity());
return resultJsonString;
} catch (Exception e) {
e.printStackTrace();
}
return resultJsonString;
}
| public static final void copy(String source, String destination) {
FileInputStream fis = null;
FileOutputStream fos = null;
try {
fis = new FileInputStream(source);
fos = new FileOutputStream(destination);
java.nio.channels.FileChannel channelSrc = fis.getChannel();
java.nio.channels.FileChannel channelDest = fos.getChannel();
channelSrc.transferTo(0, channelSrc.size(), channelDest);
fis.close();
fos.close();
} catch (FileNotFoundException e2) {
e2.printStackTrace();
} catch (IOException e2) {
e2.printStackTrace();
}
}
| false |
631 | 1,963,823 | 8,258,096 | public void loadRegistry(URL url) throws PacketAnalyzerRegistryException {
if (analyzers != null) {
return;
}
analyzers = new Hashtable();
roots = new Vector();
try {
InputStream in = url.openStream();
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder docBuilder = factory.newDocumentBuilder();
Document doc = docBuilder.parse(in);
NodeList list = doc.getElementsByTagName(PACKET_ANALYZER);
for (int i = 0; i < list.getLength(); i++) {
Node node = list.item(i);
NamedNodeMap map = node.getAttributes();
String id = map.getNamedItem(ID).getNodeValue();
String name = map.getNamedItem(NAME).getNodeValue();
String clazz = map.getNamedItem(CLASS).getNodeValue();
Node n = map.getNamedItem(EXTENDS);
String[] split = null;
if (n != null) {
String extendedAnalyzers = n.getNodeValue();
if (extendedAnalyzers.trim().length() != 0) {
split = extendedAnalyzers.split("\\s*\\,+\\s*");
}
}
PacketAnalyzerDescriptor descriptor = new PacketAnalyzerDescriptor(id, name, clazz, split);
addDescriptor(descriptor);
}
if (roots.size() == 0) {
throw new PacketAnalyzerRegistryException("There is no root analyzer in the registry!");
}
} catch (IOException e) {
throw new PacketAnalyzerRegistryException("Cannot open registry file.", e);
} catch (ParserConfigurationException e) {
throw new PacketAnalyzerRegistryException("Cannot parse registry file.", e);
} catch (SAXException e) {
throw new PacketAnalyzerRegistryException("Cannot parse registry file", e);
} catch (Throwable e) {
throw new PacketAnalyzerRegistryException("Cannot build PacketAnalyzerRegistry.", e);
}
}
| private String encryptPassword(String password) throws NoSuchAlgorithmException {
StringBuffer encryptedPassword = new StringBuffer();
MessageDigest md5 = MessageDigest.getInstance("MD5");
md5.reset();
md5.update(password.getBytes());
byte digest[] = md5.digest();
for (int i = 0; i < digest.length; i++) {
String hex = Integer.toHexString(0xFF & digest[i]);
if (hex.length() == 1) {
encryptedPassword.append('0');
}
encryptedPassword.append(hex);
}
return encryptedPassword.toString();
}
| false |
632 | 330,216 | 18,880,061 | private static void readAndRewrite(File inFile, File outFile) throws IOException {
ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile)));
DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis);
Dataset ds = DcmObjectFactory.getInstance().newDataset();
dcmParser.setDcmHandler(ds.getDcmHandler());
dcmParser.parseDcmFile(null, Tags.PixelData);
PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
System.out.println("reading " + inFile + "...");
pdReader.readPixelData(false);
ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile)));
DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE;
ds.writeDataset(out, dcmEncParam);
ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength());
System.out.println("writing " + outFile + "...");
PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
pdWriter.writePixelData();
out.flush();
out.close();
System.out.println("done!");
}
| public static boolean compress(File source, File target, Manifest manifest) {
try {
if (!(source.exists() & source.isDirectory())) return false;
if (target.exists()) target.delete();
ZipOutputStream output = null;
boolean isJar = target.getName().toLowerCase().endsWith(".jar");
if (isJar) {
File manifestDir = new File(source, "META-INF");
remove(manifestDir);
if (manifest != null) output = new JarOutputStream(new FileOutputStream(target), manifest); else output = new JarOutputStream(new FileOutputStream(target));
} else output = new ZipOutputStream(new FileOutputStream(target));
ArrayList list = getContents(source);
String baseDir = source.getAbsolutePath().replace('\\', '/');
if (!baseDir.endsWith("/")) baseDir = baseDir + "/";
int baseDirLength = baseDir.length();
byte[] buffer = new byte[1024];
int bytesRead;
for (int i = 0, n = list.size(); i < n; i++) {
File file = (File) list.get(i);
FileInputStream f_in = new FileInputStream(file);
String filename = file.getAbsolutePath().replace('\\', '/');
if (filename.startsWith(baseDir)) filename = filename.substring(baseDirLength);
if (isJar) output.putNextEntry(new JarEntry(filename)); else output.putNextEntry(new ZipEntry(filename));
while ((bytesRead = f_in.read(buffer)) != -1) output.write(buffer, 0, bytesRead);
f_in.close();
output.closeEntry();
}
output.close();
} catch (Exception exc) {
exc.printStackTrace();
return false;
}
return true;
}
| true |
633 | 7,492,253 | 22,035,132 | protected Connection openRelativeFile(String file) throws IOException {
if (cachedBits == null) {
cachedBits = new ByteArray(url.openConnection().getInputStream()).getBytes();
}
ZipInputStream zin = new ZipInputStream(new ByteArrayInputStream(cachedBits));
ZipEntry zentry;
while (true) {
zentry = zin.getNextEntry();
if (zentry == null) {
throw new IOException("Couldn't find resource " + file + " in ZIP-file");
}
if (zentry.getName().equals(file)) {
return new Connection(zin, zentry.getSize());
}
}
}
| protected void processRequest(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
ServletConfig config = getServletConfig();
ServletContext context = config.getServletContext();
try {
String driver = context.getInitParameter("driver");
Class.forName(driver);
String dbURL = context.getInitParameter("db");
String username = context.getInitParameter("username");
String password = "";
connection = DriverManager.getConnection(dbURL, username, password);
} catch (ClassNotFoundException e) {
System.out.println("Database driver not found.");
} catch (SQLException e) {
System.out.println("Error opening the db connection: " + e.getMessage());
}
String action = "";
String notice;
String error = "";
HttpSession session = request.getSession();
session.setMaxInactiveInterval(300);
if (request.getParameter("action") != null) {
action = request.getParameter("action");
} else {
notice = "Unknown action!";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
if (action.equals("edit_events")) {
String sql;
String month_name = "";
int month;
int year;
Event event;
if (request.getParameter("month") != null) {
month = Integer.parseInt(request.getParameter("month"));
String temp = request.getParameter("year_num");
year = Integer.parseInt(temp);
int month_num = month - 1;
event = new Event(year, month_num, 1);
month_name = event.getMonthName();
year = event.getYearNumber();
if (month < 10) {
sql = "SELECT * FROM event WHERE date LIKE '" + year + "-0" + month + "-%'";
} else {
sql = "SELECT * FROM event WHERE date LIKE '" + year + "-" + month + "-%'";
}
} else {
event = new Event();
month_name = event.getMonthName();
month = event.getMonthNumber() + 1;
year = event.getYearNumber();
sql = "SELECT * FROM event WHERE date LIKE '" + year + "-%" + month + "-%'";
}
try {
dbStatement = connection.createStatement();
dbResultSet = dbStatement.executeQuery(sql);
request.setAttribute("resultset", dbResultSet);
request.setAttribute("year", Integer.toString(year));
request.setAttribute("month", Integer.toString(month));
request.setAttribute("month_name", month_name);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/edit_events.jsp");
dispatcher.forward(request, response);
return;
} catch (SQLException e) {
notice = "Error retrieving events from the database.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("edit_event")) {
int id = Integer.parseInt(request.getParameter("id"));
Event event = new Event();
event = event.getEvent(id);
if (event != null) {
request.setAttribute("event", event);
request.setAttribute("id", Integer.toString(id));
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/add_event.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Error retrieving event from the database.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("save_event")) {
String title = request.getParameter("title");
String description = request.getParameter("description");
String month = request.getParameter("month");
String day = request.getParameter("day");
String year = request.getParameter("year");
String start_time = "";
String end_time = "";
if (request.getParameter("all_day") == null) {
String start_hour = request.getParameter("start_hour");
String start_minutes = request.getParameter("start_minutes");
String start_ampm = request.getParameter("start_ampm");
String end_hour = request.getParameter("end_hour");
String end_minutes = request.getParameter("end_minutes");
String end_ampm = request.getParameter("end_ampm");
if (Integer.parseInt(start_hour) < 10) {
start_hour = "0" + start_hour;
}
if (Integer.parseInt(end_hour) < 10) {
end_hour = "0" + end_hour;
}
start_time = start_hour + ":" + start_minutes + " " + start_ampm;
end_time = end_hour + ":" + end_minutes + " " + end_ampm;
}
Event event = null;
if (!start_time.equals("") && !end_time.equals("")) {
event = new Event(title, description, month, day, year, start_time, end_time);
} else {
event = new Event(title, description, month, day, year);
}
if (event.saveEvent()) {
notice = "Calendar event saved!";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Error saving calendar event.";
request.setAttribute("notice", notice);
request.setAttribute("event", event);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/add_event.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("update_event")) {
String title = request.getParameter("title");
String description = request.getParameter("description");
String month = request.getParameter("month");
String day = request.getParameter("day");
String year = request.getParameter("year");
String start_time = "";
String end_time = "";
int id = Integer.parseInt(request.getParameter("id"));
if (request.getParameter("all_day") == null) {
String start_hour = request.getParameter("start_hour");
String start_minutes = request.getParameter("start_minutes");
String start_ampm = request.getParameter("start_ampm");
String end_hour = request.getParameter("end_hour");
String end_minutes = request.getParameter("end_minutes");
String end_ampm = request.getParameter("end_ampm");
if (Integer.parseInt(start_hour) < 10) {
start_hour = "0" + start_hour;
}
if (Integer.parseInt(end_hour) < 10) {
end_hour = "0" + end_hour;
}
start_time = start_hour + ":" + start_minutes + " " + start_ampm;
end_time = end_hour + ":" + end_minutes + " " + end_ampm;
}
Event event = null;
if (!start_time.equals("") && !end_time.equals("")) {
event = new Event(title, description, month, day, year, start_time, end_time);
} else {
event = new Event(title, description, month, day, year);
}
if (event.updateEvent(id)) {
notice = "Calendar event updated!";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Error updating calendar event.";
request.setAttribute("notice", notice);
request.setAttribute("event", event);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/add_event.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("delete_event")) {
int id = Integer.parseInt(request.getParameter("id"));
Event event = new Event();
if (event.deleteEvent(id)) {
notice = "Calendar event successfully deleted.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_events");
dispatcher.forward(request, response);
return;
} else {
notice = "Error deleting event from the database.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_events");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("edit_members")) {
String sql = "SELECT * FROM person ORDER BY lname";
if (request.getParameter("member_type") != null) {
String member_type = request.getParameter("member_type");
if (member_type.equals("all")) {
sql = "SELECT * FROM person ORDER BY lname";
} else {
sql = "SELECT * FROM person where member_type LIKE '" + member_type + "' ORDER BY lname";
}
request.setAttribute("member_type", member_type);
}
try {
dbStatement = connection.createStatement();
dbResultSet = dbStatement.executeQuery(sql);
request.setAttribute("resultset", dbResultSet);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/edit_members.jsp");
dispatcher.forward(request, response);
return;
} catch (SQLException e) {
notice = "Error retrieving members from the database.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("edit_person")) {
int id = Integer.parseInt(request.getParameter("id"));
String member_type = request.getParameter("member_type");
Person person = new Person();
person = person.getPerson(id);
if (member_type.equals("student")) {
Student student = person.getStudent();
request.setAttribute("student", student);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/edit_student.jsp");
dispatcher.forward(request, response);
return;
} else if (member_type.equals("alumni")) {
Alumni alumni = person.getAlumni();
request.setAttribute("alumni", alumni);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/edit_alumni.jsp");
dispatcher.forward(request, response);
return;
} else if (member_type.equals("hospital")) {
Hospital hospital = person.getHospital(id);
request.setAttribute("hospital", hospital);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/edit_hospital.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("update_alumni")) {
int person_id = Integer.parseInt(request.getParameter("person_id"));
Person person = new Person();
person = person.getPerson(person_id);
Alumni cur_alumni = person.getAlumni();
String fname = request.getParameter("fname");
String lname = request.getParameter("lname");
String address1 = request.getParameter("address1");
String address2 = request.getParameter("address2");
String city = request.getParameter("city");
String state = request.getParameter("state");
String zip = request.getParameter("zip");
String email = request.getParameter("email");
String company_name = request.getParameter("company_name");
String position = request.getParameter("position");
int mentor = 0;
if (request.getParameter("mentor") != null) {
mentor = 1;
}
String graduation_date = request.getParameter("graduation_year") + "-" + request.getParameter("graduation_month") + "-01";
String password = "";
if (request.getParameter("password") != null) {
password = request.getParameter("password");
MessageDigest md = null;
try {
md = MessageDigest.getInstance("MD5");
md.update(password.getBytes("UTF-8"));
} catch (Exception x) {
notice = "Could not encrypt your password. Please try again.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
}
password = (new BASE64Encoder()).encode(md.digest());
} else {
password = cur_alumni.getPassword();
}
int is_admin = 0;
if (request.getParameter("is_admin") != null) {
is_admin = 1;
}
Alumni new_alumni = new Alumni(fname, lname, address1, address2, city, state, zip, email, password, is_admin, company_name, position, graduation_date, mentor);
if (!new_alumni.getEmail().equals(cur_alumni.getEmail())) {
if (new_alumni.checkEmailIsRegistered()) {
notice = "That email address is already registered!";
request.setAttribute("notice", notice);
request.setAttribute("alumni", new_alumni);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
}
}
if (!new_alumni.updateAlumni(person_id)) {
session.setAttribute("alumni", new_alumni);
notice = "There was an error saving your information. Please try again.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
}
notice = "Member information successfully updated.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
} else if (action.equals("update_hospital")) {
int person_id = Integer.parseInt(request.getParameter("person_id"));
Person person = new Person();
person = person.getPerson(person_id);
Hospital cur_hospital = person.getHospital(person_id);
String fname = request.getParameter("fname");
String lname = request.getParameter("lname");
String address1 = request.getParameter("address1");
String address2 = request.getParameter("address2");
String city = request.getParameter("city");
String state = request.getParameter("state");
String zip = request.getParameter("zip");
String email = request.getParameter("email");
String name = request.getParameter("name");
String phone = request.getParameter("phone");
String url = request.getParameter("url");
String password = "";
if (cur_hospital.getPassword() != null) {
if (request.getParameter("password") != null && !request.getParameter("password").equals("")) {
password = request.getParameter("password");
MessageDigest md = null;
try {
md = MessageDigest.getInstance("MD5");
md.update(password.getBytes("UTF-8"));
} catch (Exception x) {
notice = "Could not encrypt your password. Please try again.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
}
password = (new BASE64Encoder()).encode(md.digest());
} else {
password = cur_hospital.getPassword();
}
}
int is_admin = 0;
if (request.getParameter("is_admin") != null) {
is_admin = 1;
}
Hospital new_hospital = new Hospital(fname, lname, address1, address2, city, state, zip, email, password, is_admin, name, phone, url);
if (!new_hospital.getEmail().equals(cur_hospital.getEmail())) {
if (new_hospital.checkEmailIsRegistered()) {
notice = "That email address is already registered!";
request.setAttribute("notice", notice);
request.setAttribute("hospital", new_hospital);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
}
}
if (!new_hospital.updateHospital(person_id)) {
session.setAttribute("hospital", new_hospital);
notice = "There was an error saving your information. Please try again.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
}
notice = "Information successfully updated.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
} else if (action.equals("update_student")) {
int person_id = Integer.parseInt(request.getParameter("person_id"));
Person person = new Person();
person = person.getPerson(person_id);
Student cur_student = person.getStudent();
String fname = request.getParameter("fname");
String lname = request.getParameter("lname");
String address1 = request.getParameter("address1");
String address2 = request.getParameter("address2");
String city = request.getParameter("city");
String state = request.getParameter("state");
String zip = request.getParameter("zip");
String email = request.getParameter("email");
String start_date = request.getParameter("start_year") + "-" + request.getParameter("start_month") + "-01";
String graduation_date = "";
if (!request.getParameter("grad_year").equals("") && !request.getParameter("grad_month").equals("")) {
graduation_date = request.getParameter("grad_year") + "-" + request.getParameter("grad_month") + "-01";
}
String password = "";
if (request.getParameter("password") != null && !request.getParameter("password").equals("")) {
password = request.getParameter("password");
MessageDigest md = null;
try {
md = MessageDigest.getInstance("MD5");
md.update(password.getBytes("UTF-8"));
} catch (Exception x) {
notice = "Could not encrypt your password. Please try again.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
}
password = (new BASE64Encoder()).encode(md.digest());
} else {
password = cur_student.getPassword();
}
int is_admin = 0;
if (request.getParameter("is_admin") != null) {
is_admin = 1;
}
Student new_student = new Student(fname, lname, address1, address2, city, state, zip, email, password, is_admin, start_date, graduation_date);
if (!new_student.getEmail().equals(cur_student.getEmail())) {
if (new_student.checkEmailIsRegistered()) {
notice = "That email address is already registered!";
request.setAttribute("notice", notice);
request.setAttribute("student", new_student);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
}
}
if (!new_student.updateStudent(person_id)) {
notice = "There was an error saving your information. Please try again.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
}
notice = "Information successfully updated.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members");
dispatcher.forward(request, response);
return;
} else if (action.equals("delete_person")) {
int id = Integer.parseInt(request.getParameter("id"));
String member_type = request.getParameter("member_type");
Person person = new Person();
person = person.getPerson(id);
if (person.deletePerson(member_type)) {
notice = person.getFname() + ' ' + person.getLname() + " successfully deleted from database.";
request.setAttribute("notice", notice);
person = null;
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=edit_members&member_type=all");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("manage_pages")) {
String sql = "SELECT * FROM pages WHERE parent_id=0 OR parent_id IN (SELECT id FROM pages WHERE title LIKE 'root')";
if (request.getParameter("id") != null) {
int id = Integer.parseInt(request.getParameter("id"));
sql = "SELECT * FROM pages WHERE parent_id=" + id;
}
try {
dbStatement = connection.createStatement();
dbResultSet = dbStatement.executeQuery(sql);
request.setAttribute("resultset", dbResultSet);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/edit_pages.jsp");
dispatcher.forward(request, response);
return;
} catch (SQLException e) {
notice = "Error retrieving content pages from the database.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("add_page")) {
String sql = "SELECT id, title FROM pages WHERE parent_id=0 OR parent_id IN (SELECT id FROM pages WHERE title LIKE 'root')";
try {
dbStatement = connection.createStatement();
dbResultSet = dbStatement.executeQuery(sql);
request.setAttribute("resultset", dbResultSet);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/add_page.jsp");
dispatcher.forward(request, response);
return;
} catch (SQLException e) {
notice = "Error retrieving content pages from the database.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("save_page")) {
String title = request.getParameter("title");
String content = request.getParameter("content");
Page page = null;
if (request.getParameter("parent_id") != null) {
int parent_id = Integer.parseInt(request.getParameter("parent_id"));
page = new Page(title, content, parent_id);
} else {
page = new Page(title, content, 0);
}
if (page.savePage()) {
notice = "Content page saved!";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "There was an error saving the page.";
request.setAttribute("page", page);
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/add_page.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("edit_page")) {
String sql = "SELECT * FROM pages WHERE parent_id=0";
int id = Integer.parseInt(request.getParameter("id"));
Page page = new Page();
page = page.getPage(id);
try {
dbStatement = connection.createStatement();
dbResultSet = dbStatement.executeQuery(sql);
request.setAttribute("resultset", dbResultSet);
} catch (SQLException e) {
notice = "Error retrieving content pages from the database.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
if (page != null) {
request.setAttribute("page", page);
request.setAttribute("id", Integer.toString(id));
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/add_page.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Error retrieving content page from the database.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("update_page")) {
int id = Integer.parseInt(request.getParameter("id"));
String title = request.getParameter("title");
String content = request.getParameter("content");
int parent_id = 0;
if (request.getParameter("parent_id") != null) {
parent_id = Integer.parseInt(request.getParameter("parent_id"));
}
Page page = new Page(title, content, parent_id);
if (page.updatePage(id)) {
notice = "Content page was updated successfully.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Error updating the content page.";
request.setAttribute("notice", notice);
request.setAttribute("page", page);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/add_page.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("delete_page")) {
int id = Integer.parseInt(request.getParameter("id"));
Page page = new Page();
if (page.deletePage(id)) {
notice = "Content page (and sub pages) deleted successfully.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Error deleting the content page(s).";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("list_residencies")) {
Residency residency = new Residency();
dbResultSet = residency.getResidencies();
request.setAttribute("result", dbResultSet);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/list_residencies.jsp");
dispatcher.forward(request, response);
return;
} else if (action.equals("delete_residency")) {
int job_id = Integer.parseInt(request.getParameter("id"));
Residency residency = new Residency();
if (residency.deleteResidency(job_id)) {
notice = "Residency has been successfully deleted.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=list_residencies");
dispatcher.forward(request, response);
return;
} else {
notice = "Error deleting the residency.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("edit_residency")) {
int job_id = Integer.parseInt(request.getParameter("id"));
Residency residency = new Residency();
dbResultSet = residency.getResidency(job_id);
if (dbResultSet != null) {
try {
int hId = dbResultSet.getInt("hospital_id");
String hName = residency.getHospitalName(hId);
request.setAttribute("hName", hName);
dbResultSet.beforeFirst();
} catch (SQLException e) {
error = "There was an error retreiving the residency.";
session.setAttribute("error", error);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/error.jsp");
dispatcher.forward(request, response);
return;
}
request.setAttribute("result", dbResultSet);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/edit_residency.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "There was an error in locating the residency you selected.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("new_residency")) {
Residency residency = new Residency();
dbResultSet = residency.getHospitals();
request.setAttribute("result", dbResultSet);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/add_residency.jsp");
dispatcher.forward(request, response);
return;
} else if (action.equals("add_residency")) {
Person person = (Person) session.getAttribute("person");
if (person.isAdmin()) {
String hName = request.getParameter("hName");
String title = request.getParameter("title");
String description = request.getParameter("description");
String start_month = request.getParameter("startDateMonth");
String start_day = request.getParameter("startDateDay");
String start_year = request.getParameter("startDateYear");
String start_date = start_year + start_month + start_day;
String end_month = request.getParameter("endDateMonth");
String end_day = request.getParameter("endDateDay");
String end_year = request.getParameter("endDateYear");
String end_date = end_year + end_month + end_day;
String deadline_month = request.getParameter("deadlineDateMonth");
String deadline_day = request.getParameter("deadlineDateDay");
String deadline_year = request.getParameter("deadlineDateYear");
String deadline_date = deadline_year + deadline_month + deadline_day;
int hId = Integer.parseInt(request.getParameter("hId"));
Residency residency = new Residency(title, start_date, end_date, deadline_date, description, hId);
if (residency.saveResidency()) {
notice = "Residency has been successfully saved.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=list_residencies");
dispatcher.forward(request, response);
return;
} else {
notice = "Error saving the residency.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp");
dispatcher.forward(request, response);
return;
}
}
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp");
dispatcher.forward(request, response);
return;
} else if (action.equals("update_residency")) {
Person person = (Person) session.getAttribute("person");
int job_id = Integer.parseInt(request.getParameter("job_id"));
if (person.isAdmin()) {
String hName = request.getParameter("hName");
String title = request.getParameter("title");
String description = request.getParameter("description");
String start_month = request.getParameter("startDateMonth");
String start_day = request.getParameter("startDateDay");
String start_year = request.getParameter("startDateYear");
String start_date = start_year + start_month + start_day;
String end_month = request.getParameter("endDateMonth");
String end_day = request.getParameter("endDateDay");
String end_year = request.getParameter("endDateYear");
String end_date = end_year + end_month + end_day;
String deadline_month = request.getParameter("deadlineDateMonth");
String deadline_day = request.getParameter("deadlineDateDay");
String deadline_year = request.getParameter("deadlineDateYear");
String deadline_date = deadline_year + deadline_month + deadline_day;
int hId = Integer.parseInt(request.getParameter("hId"));
Residency residency = new Residency(job_id, title, start_date, end_date, deadline_date, description);
if (residency.updateResidency(job_id)) {
notice = "Residency has been successfully saved.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=list_residencies");
dispatcher.forward(request, response);
return;
} else {
notice = "Error saving the residency.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp");
dispatcher.forward(request, response);
return;
}
}
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/index.jsp");
dispatcher.forward(request, response);
return;
} else if (action.equals("add_hospital")) {
Person person = (Person) session.getAttribute("person");
if (person.isAdmin()) {
String name = request.getParameter("name");
String url = request.getParameter("url");
String address1 = request.getParameter("address1");
String address2 = request.getParameter("address2");
String city = request.getParameter("city");
String state = request.getParameter("state");
String zip = request.getParameter("zip");
String phone = request.getParameter("phone");
String lname = request.getParameter("name");
Hospital hospital = new Hospital(lname, address1, address2, city, state, zip, name, phone, url);
if (!hospital.saveHospitalAdmin()) {
notice = "There was an error saving your information. Please try again.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=new_residency");
dispatcher.forward(request, response);
return;
} else {
notice = "Unknown request. Please try again.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("Get Admin News List")) {
News news = new News();
if (news.getNewsList() != null) {
dbResultSet = news.getNewsList();
request.setAttribute("result", dbResultSet);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/list.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Could not get news list.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("Get News List")) {
News news = new News();
if (news.getNewsList() != null) {
dbResultSet = news.getNewsList();
request.setAttribute("result", dbResultSet);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/news_list.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Could not get news list.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/gsu_fhce/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("detail")) {
String id = request.getParameter("id");
News news = new News();
if (news.getNewsDetail(id) != null) {
dbResultSet = news.getNewsDetail(id);
request.setAttribute("result", dbResultSet);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/news_detail.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Could not get news detail.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("delete")) {
int id = 0;
id = Integer.parseInt(request.getParameter("id"));
News news = new News();
if (news.deleteNews(id)) {
notice = "News successfully deleted.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=Get Admin News List");
dispatcher.forward(request, response);
return;
} else {
notice = "Error deleting the news.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=Get Admin News List");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("edit")) {
int id = Integer.parseInt(request.getParameter("id"));
News news = new News();
news = news.getNews(id);
if (news != null) {
request.setAttribute("news", news);
request.setAttribute("id", Integer.toString(id));
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/news_update.jsp");
dispatcher.forward(request, response);
return;
} else {
notice = "Error retrieving news from the database.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("Update News")) {
String title = request.getParameter("title");
String date = (request.getParameter("year")) + (request.getParameter("month")) + (request.getParameter("day"));
String content = request.getParameter("content");
int id = Integer.parseInt(request.getParameter("newsid"));
News news = new News(title, date, content);
if (news.updateNews(id)) {
notice = "News successfully updated.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=Get Admin News List");
dispatcher.forward(request, response);
return;
} else {
notice = "Could not update news.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=Get Admin News List");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("Add News")) {
String id = "";
String title = request.getParameter("title");
String date = request.getParameter("year") + "-" + request.getParameter("month") + "-" + request.getParameter("day");
String content = request.getParameter("content");
News news = new News(title, date, content);
if (news.addNews()) {
notice = "News successfully added.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=Get Admin News List");
dispatcher.forward(request, response);
return;
} else {
notice = "Could not add news.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("admin/index.jsp");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("manage_mship")) {
Mentor mentor = new Mentor();
dbResultSet = mentor.getMentorships();
if (dbResultSet != null) {
request.setAttribute("result", dbResultSet);
} else {
notice = "There are no current mentorships.";
request.setAttribute("notice", notice);
}
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/list_mentorships.jsp");
dispatcher.forward(request, response);
return;
} else if (action.equals("delete_mship")) {
int mentorship_id = Integer.parseInt(request.getParameter("id"));
Mentor mentor = new Mentor();
if (mentor.delMentorship(mentorship_id)) {
notice = "Mentorship successfully deleted.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=manage_mship");
dispatcher.forward(request, response);
return;
} else {
notice = "Error deleting the mentorship.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=manage_mship");
dispatcher.forward(request, response);
return;
}
} else if (action.equals("new_mship")) {
Mentor mentor = new Mentor();
ResultSet alumnis = null;
ResultSet students = null;
alumnis = mentor.getAlumnis();
students = mentor.getStudents();
request.setAttribute("alumni_result", alumnis);
request.setAttribute("student_result", students);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/create_mship.jsp");
dispatcher.forward(request, response);
return;
} else if (action.equals("create_mship")) {
int student_id = Integer.parseInt(request.getParameter("student_id"));
int alumni_id = Integer.parseInt(request.getParameter("alumni_id"));
Mentor mentor = new Mentor();
if (mentor.addMentorship(student_id, alumni_id)) {
notice = "Mentorship successfully created.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin?action=manage_mship");
dispatcher.forward(request, response);
return;
} else {
notice = "There was an error creating the mentorship.";
request.setAttribute("notice", notice);
RequestDispatcher dispatcher = getServletContext().getRequestDispatcher("/admin/create_mship.jsp");
dispatcher.forward(request, response);
return;
}
}
}
| false |
634 | 5,505,336 | 11,335,657 | public void aprovarCandidato(Atividade atividade) throws SQLException {
Connection conn = null;
String insert = "update Atividade_has_recurso_humano set ativo='true' " + "where atividade_idatividade=" + atividade.getIdAtividade() + " and " + " usuario_idusuario=" + atividade.getRecursoHumano().getIdUsuario();
try {
conn = connectionFactory.getConnection(true);
conn.setAutoCommit(false);
Statement stmt = conn.createStatement();
Integer result = stmt.executeUpdate(insert);
conn.commit();
} catch (SQLException e) {
conn.rollback();
throw e;
} finally {
conn.close();
}
}
| public void sorter() {
String inputLine1, inputLine2;
String epiNames[] = new String[1000];
String epiEpisodes[] = new String[1000];
int lineCounter = 0;
try {
String pluginDir = pluginInterface.getPluginDirectoryName();
String eplist_file = pluginDir + System.getProperty("file.separator") + "EpisodeList.txt";
File episodeList = new File(eplist_file);
if (!episodeList.isFile()) {
episodeList.createNewFile();
}
final BufferedReader in = new BufferedReader(new FileReader(episodeList));
while ((inputLine1 = in.readLine()) != null) {
if ((inputLine2 = in.readLine()) != null) {
epiNames[lineCounter] = inputLine1;
epiEpisodes[lineCounter] = inputLine2;
lineCounter++;
}
}
in.close();
int epiLength = epiNames.length;
for (int i = 0; i < (lineCounter); i++) {
for (int j = 0; j < (lineCounter - 1); j++) {
if (epiNames[j].compareToIgnoreCase(epiNames[j + 1]) > 0) {
String temp = epiNames[j];
epiNames[j] = epiNames[j + 1];
epiNames[j + 1] = temp;
String temp2 = epiEpisodes[j];
epiEpisodes[j] = epiEpisodes[j + 1];
epiEpisodes[j + 1] = temp2;
}
}
}
File episodeList2 = new File(eplist_file);
BufferedWriter bufWriter = new BufferedWriter(new FileWriter(episodeList2));
for (int i = 0; i <= lineCounter; i++) {
if (epiNames[i] == null) {
break;
}
bufWriter.write(epiNames[i] + "\n");
bufWriter.write(epiEpisodes[i] + "\n");
}
bufWriter.close();
} catch (IOException e) {
e.printStackTrace();
}
}
| false |
635 | 3,898,252 | 11,986,970 | public static void decoupe(String input_file_path) {
final int BUFFER_SIZE = 2000000;
try {
FileInputStream fr = new FileInputStream(input_file_path);
byte[] cbuf = new byte[BUFFER_SIZE];
int n_read = 0;
int i = 0;
boolean bContinue = true;
while (bContinue) {
n_read = fr.read(cbuf, 0, BUFFER_SIZE);
if (n_read == -1) break;
FileOutputStream fo = new FileOutputStream("f_" + ++i);
fo.write(cbuf, 0, n_read);
fo.close();
}
fr.close();
} catch (FileNotFoundException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
}
| public void Copy() throws IOException {
if (!FileDestination.exists()) {
FileDestination.createNewFile();
}
FileChannel source = null;
FileChannel destination = null;
try {
source = new FileInputStream(FileSource).getChannel();
destination = new FileOutputStream(FileDestination).getChannel();
destination.transferFrom(source, 0, source.size());
} finally {
if (source != null) {
source.close();
}
if (destination != null) {
destination.close();
}
}
}
| true |
636 | 4,753,846 | 17,245,830 | public static boolean checkVersion(String vers) throws IOException {
try {
String tmp = "";
URL url = new URL("http://rbmsoft.com.br/apis/ql/index.php?url=null&versao=" + vers);
BufferedInputStream buf = new BufferedInputStream(url.openStream());
int dado = 0;
char letra;
while ((dado = buf.read()) != -1) {
letra = (char) dado;
tmp += letra;
}
if (tmp.contains("FALSE")) {
return false;
} else if (tmp.contains("TRUE")) {
new UpdateCheck().updateDialog();
return true;
}
} catch (MalformedURLException e) {
e.printStackTrace();
}
return false;
}
| private static String readURL(URL url) {
String s = "";
try {
BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream()));
String str;
while ((str = in.readLine()) != null) {
s += str;
}
in.close();
} catch (Exception e) {
s = null;
}
return s;
}
| false |
637 | 9,446,836 | 16,926,520 | private static void ftpTest() {
FTPClient f = new FTPClient();
try {
f.connect("oscomak.net");
System.out.print(f.getReplyString());
f.setFileType(FTPClient.BINARY_FILE_TYPE);
} catch (SocketException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
String password = JOptionPane.showInputDialog("Enter password");
if (password == null || password.equals("")) {
System.out.println("No password");
return;
}
try {
f.login("oscomak_pointrel", password);
System.out.print(f.getReplyString());
} catch (IOException e) {
e.printStackTrace();
}
try {
String workingDirectory = f.printWorkingDirectory();
System.out.println("Working directory: " + workingDirectory);
System.out.print(f.getReplyString());
} catch (IOException e1) {
e1.printStackTrace();
}
try {
f.enterLocalPassiveMode();
System.out.print(f.getReplyString());
System.out.println("Trying to list files");
String[] fileNames = f.listNames();
System.out.print(f.getReplyString());
System.out.println("Got file list fileNames: " + fileNames.length);
for (String fileName : fileNames) {
System.out.println("File: " + fileName);
}
System.out.println();
System.out.println("done reading stream");
System.out.println("trying alterative way to read stream");
ByteArrayOutputStream outputStream = new ByteArrayOutputStream();
f.retrieveFile(fileNames[0], outputStream);
System.out.println("size: " + outputStream.size());
System.out.println(outputStream.toString());
System.out.println("done with alternative");
System.out.println("Trying to store file back");
ByteArrayInputStream inputStream = new ByteArrayInputStream(outputStream.toByteArray());
boolean storeResult = f.storeFile("test.txt", inputStream);
System.out.println("Done storing " + storeResult);
f.disconnect();
System.out.print(f.getReplyString());
System.out.println("disconnected");
} catch (IOException e) {
e.printStackTrace();
}
}
| public int extractDocumentsInternal(DocumentHolder holder, DocumentFactory docFactory) {
FTPClient client = new FTPClient();
try {
client.connect(site, port == 0 ? 21 : port);
client.login(user, password);
visitDirectory(client, "", path, holder, docFactory);
client.disconnect();
} catch (SocketException e) {
e.printStackTrace();
} catch (IOException e) {
}
return fileCount;
}
| true |
638 | 17,673,488 | 4,213,253 | public String get(String question) {
try {
System.out.println(url + question);
URL urlonlineserver = new URL(url + question);
BufferedReader in = new BufferedReader(new InputStreamReader(urlonlineserver.openStream()));
String inputLine;
String returnstring = "";
while ((inputLine = in.readLine()) != null) returnstring += inputLine;
in.close();
return returnstring;
} catch (IOException e) {
return "";
}
}
| public VersionInfo getVersionInfo(String url) {
try {
XmlContentHandler handler = new XmlContentHandler();
XMLReader myReader = XMLReaderFactory.createXMLReader();
myReader.setContentHandler(handler);
myReader.parse(new InputSource(new URL(url).openStream()));
return handler.getVersionInfo();
} catch (SAXException e) {
if (debug) {
println("SAXException was thrown!");
e.printStackTrace();
}
} catch (MalformedURLException e) {
if (debug) {
println("MalformedURLException was thrown!");
e.printStackTrace();
}
} catch (IOException e) {
if (debug) {
println("IOException was thrown!");
e.printStackTrace();
}
}
return null;
}
| false |
639 | 22,998,998 | 22,207,815 | public static void copyFile(File sourceFile, File destFile) throws IOException {
FileChannel inputFileChannel = new FileInputStream(sourceFile).getChannel();
FileChannel outputFileChannel = new FileOutputStream(destFile).getChannel();
long offset = 0L;
long length = inputFileChannel.size();
final long MAXTRANSFERBUFFERLENGTH = 1024 * 1024;
try {
for (; offset < length; ) {
offset += inputFileChannel.transferTo(offset, MAXTRANSFERBUFFERLENGTH, outputFileChannel);
inputFileChannel.position(offset);
}
} finally {
try {
outputFileChannel.close();
} catch (Exception ignore) {
}
try {
inputFileChannel.close();
} catch (IOException ignore) {
}
}
}
| public static Checksum checksum(File file, Checksum checksum) throws IOException {
if (file.isDirectory()) {
throw new IllegalArgumentException("Checksums can't be computed on directories");
}
InputStream in = null;
try {
in = new CheckedInputStream(new FileInputStream(file), checksum);
IOUtils.copy(in, new NullOutputStream());
} finally {
IOUtils.closeQuietly(in);
}
return checksum;
}
| true |
640 | 10,264,860 | 7,398,604 | public AddressType[] getAdressFromCRSCoordinate(Point3d crs_position) {
AddressType[] result = null;
String postRequest = "<?xml version=\"1.0\" encoding=\"UTF-8\"?> \n" + "<xls:XLS xmlns:xls=\"http://www.opengis.net/xls\" xmlns:sch=\"http://www.ascc.net/xml/schematron\" xmlns:gml=\"http://www.opengis.net/gml\" xmlns:xlink=\"http://www.w3.org/1999/xlink\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://www.opengis.net/xls \n" + " http://gdi3d.giub.uni-bonn.de/lus/schemas/LocationUtilityService.xsd\" version=\"1.1\"> \n" + " <xls:RequestHeader srsName=\"EPSG:" + Navigator.getEpsg_code() + "\"/> \n" + " <xls:Request methodName=\"ReverseGeocodeRequest\" requestID=\"123456789\" version=\"1.1\"> \n" + " <xls:ReverseGeocodeRequest> \n" + " <xls:Position> \n" + " <gml:Point srsName=\"" + Navigator.getEpsg_code() + "\"> \n" + " <gml:pos>" + crs_position.x + " " + crs_position.y + "</gml:pos> \n" + " </gml:Point> \n" + " </xls:Position> \n" + " <xls:ReverseGeocodePreference>StreetAddress</xls:ReverseGeocodePreference> \n" + " </xls:ReverseGeocodeRequest> \n" + " </xls:Request> \n" + "</xls:XLS> \n";
try {
if (Navigator.isVerbose()) {
System.out.println("contacting " + serviceEndPoint + ":\n" + postRequest);
}
URL u = new URL(serviceEndPoint);
HttpURLConnection urlc = (HttpURLConnection) u.openConnection();
urlc.setReadTimeout(Navigator.TIME_OUT);
urlc.setAllowUserInteraction(false);
urlc.setRequestMethod("POST");
urlc.setRequestProperty("Content-Type", "application/xml");
urlc.setDoOutput(true);
urlc.setDoInput(true);
urlc.setUseCaches(false);
PrintWriter xmlOut = null;
xmlOut = new java.io.PrintWriter(urlc.getOutputStream());
xmlOut.write(postRequest);
xmlOut.flush();
xmlOut.close();
InputStream is = urlc.getInputStream();
XLSDocument xlsResponse = XLSDocument.Factory.parse(is);
is.close();
XLSType xlsTypeResponse = xlsResponse.getXLS();
AbstractBodyType abBodyResponse[] = xlsTypeResponse.getBodyArray();
ResponseType response = (ResponseType) abBodyResponse[0].changeType(ResponseType.type);
AbstractResponseParametersType respParam = response.getResponseParameters();
if (respParam == null) {
return null;
}
ReverseGeocodeResponseType drResp = (ReverseGeocodeResponseType) respParam.changeType(ReverseGeocodeResponseType.type);
net.opengis.xls.ReverseGeocodedLocationType[] types = drResp.getReverseGeocodedLocationArray();
int num = types.length;
if (num > 2) {
return null;
}
result = new AddressType[num];
for (int i = 0; i < num; i++) {
String addressDescription = "<b>";
net.opengis.xls.ReverseGeocodedLocationType type = types[i];
result[i] = type.getAddress();
}
} catch (java.net.ConnectException ce) {
JOptionPane.showMessageDialog(null, "no connection to reverse geocoder", "Connection Error", JOptionPane.ERROR_MESSAGE);
} catch (Exception e) {
e.printStackTrace();
}
return result;
}
| @Override
public Collection<IAuthor> doImport() throws Exception {
progress.initialize(2, "Ściągam autorów amerykańskich");
String url = "http://pl.wikipedia.org/wiki/Kategoria:Ameryka%C5%84scy_autorzy_fantastyki";
UrlResource resource = new UrlResource(url);
InputStream urlInputStream = resource.getInputStream();
StringWriter writer = new StringWriter();
IOUtils.copy(urlInputStream, writer);
progress.advance("Parsuję autorów amerykańskich");
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder = factory.newDocumentBuilder();
String httpDoc = writer.toString();
httpDoc = httpDoc.replaceFirst("(?s)<!DOCTYPE.+?>\\n", "");
httpDoc = httpDoc.replaceAll("(?s)<script.+?</script>", "");
httpDoc = "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>\n" + httpDoc;
ByteArrayInputStream byteInputStream = new ByteArrayInputStream(httpDoc.getBytes("UTF-8"));
Document doc = builder.parse(byteInputStream);
ArrayList<String> authorNames = new ArrayList<String>();
ArrayList<IAuthor> authors = new ArrayList<IAuthor>();
XPathFactory xpathFactory = XPathFactory.newInstance();
XPath xpath = xpathFactory.newXPath();
NodeList list = (NodeList) xpath.evaluate("//ul/li/div/div/a", doc, XPathConstants.NODESET);
for (int i = 0; i < list.getLength(); i++) {
String name = list.item(i).getTextContent();
if (StringUtils.isNotBlank(name)) {
authorNames.add(name);
}
}
list = (NodeList) xpath.evaluate("//td/ul/li/a", doc, XPathConstants.NODESET);
for (int i = 0; i < list.getLength(); i++) {
String name = list.item(i).getTextContent();
if (StringUtils.isNotBlank(name)) {
authorNames.add(name);
}
}
for (String name : authorNames) {
int idx = name.lastIndexOf(' ');
String fname = name.substring(0, idx).trim();
String lname = name.substring(idx + 1).trim();
authors.add(new Author(fname, lname));
}
progress.advance("Wykonano");
return authors;
}
| false |
641 | 20,081,740 | 8,515,616 | public static void main(String[] args) throws Exception {
if (args.length < 3) {
usage(System.out);
System.exit(1);
}
final File tmpFile = File.createTempFile("sej", null);
tmpFile.deleteOnExit();
final FileOutputStream destination = new FileOutputStream(tmpFile);
final String mainClass = args[1];
final Collection jars = new LinkedList();
for (int i = 2; i < args.length; i++) {
String arg = args[i];
jars.add(arg);
}
JarInterpretted interpretted = new JarInterpretted(destination);
JarCat rowr = new JarCat(destination, createManifest(mainClass), jars);
interpretted.write();
rowr.write();
destination.close();
final File finalDestinationFile = new File(args[0]);
final FileOutputStream finalDestination = new FileOutputStream(finalDestinationFile);
IOUtils.copy(new FileInputStream(tmpFile), finalDestination);
finalDestination.close();
Chmod chmod = new Chmod("a+rx", new File[] { finalDestinationFile });
chmod.invoke();
}
| public ResponseStatus nowPlaying(String artist, String track, String album, int length, int tracknumber) throws IOException {
if (sessionId == null) throw new IllegalStateException("Perform successful handshake first.");
String b = album != null ? encode(album) : "";
String l = length == -1 ? "" : String.valueOf(length);
String n = tracknumber == -1 ? "" : String.valueOf(tracknumber);
String body = String.format("s=%s&a=%s&t=%s&b=%s&l=%s&n=%s&m=", sessionId, encode(artist), encode(track), b, l, n);
if (Caller.getInstance().isDebugMode()) System.out.println("now playing: " + body);
Proxy proxy = Caller.getInstance().getProxy();
HttpURLConnection urlConnection = Caller.getInstance().openConnection(nowPlayingUrl);
urlConnection.setRequestMethod("POST");
urlConnection.setDoOutput(true);
OutputStream outputStream = urlConnection.getOutputStream();
BufferedWriter writer = new BufferedWriter(new OutputStreamWriter(outputStream));
writer.write(body);
writer.close();
InputStream is = urlConnection.getInputStream();
BufferedReader r = new BufferedReader(new InputStreamReader(is));
String status = r.readLine();
r.close();
return new ResponseStatus(ResponseStatus.codeForStatus(status));
}
| false |
642 | 889,519 | 970,638 | private void displayDiffResults() throws IOException {
File outFile = File.createTempFile("diff", ".htm");
outFile.deleteOnExit();
FileOutputStream outStream = new FileOutputStream(outFile);
BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream));
out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n");
if (addedTable.length() > 0) {
out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>");
out.write(addedTable.toString());
out.write("</table><br><br>");
}
if (modifiedTable.length() > 0) {
out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>");
out.write(modifiedTable.toString());
out.write("</table><br><br>");
}
if (deletedTable.length() > 0) {
out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>");
out.write(deletedTable.toString());
out.write("</table><br><br>");
}
out.write("<table name=METRICS BORDER>\n");
if (modifiedTable.length() > 0 || deletedTable.length() > 0) {
out.write("<tr><td>Base: </td><td>");
out.write(Long.toString(base));
out.write("</td></tr>\n<tr><td>Deleted: </td><td>");
out.write(Long.toString(deleted));
out.write("</td></tr>\n<tr><td>Modified: </td><td>");
out.write(Long.toString(modified));
out.write("</td></tr>\n<tr><td>Added: </td><td>");
out.write(Long.toString(added));
out.write("</td></tr>\n<tr><td>New & Changed: </td><td>");
out.write(Long.toString(added + modified));
out.write("</td></tr>\n");
}
out.write("<tr><td>Total: </td><td>");
out.write(Long.toString(total));
out.write("</td></tr>\n</table></div>");
redlinesOut.close();
out.flush();
InputStream redlines = new FileInputStream(redlinesTempFile);
byte[] buffer = new byte[4096];
int bytesRead;
while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead);
outStream.write("</BODY></HTML>".getBytes());
outStream.close();
Browser.launch(outFile.toURL().toString());
}
| private static String hashPassword(String password, String customsalt) throws NoSuchAlgorithmException, UnsupportedEncodingException {
password = SALT1 + password;
MessageDigest md5 = MessageDigest.getInstance("MD5");
md5.update(password.getBytes(), 0, password.length());
password += convertToHex(md5.digest()) + SALT2 + customsalt;
MessageDigest md = MessageDigest.getInstance("SHA-512");
byte[] sha1hash = new byte[40];
md.update(password.getBytes("UTF-8"), 0, password.length());
sha1hash = md.digest();
return convertToHex(sha1hash) + "|" + customsalt;
}
| false |
643 | 8,452,133 | 2,633,238 | public void delete(String fileToDelete) throws IOException {
FTPClient ftp = new FTPClient();
try {
int reply = 0;
ftp.connect(this.endpointURL, this.endpointPort);
reply = ftp.getReplyCode();
if (!FTPReply.isPositiveCompletion(reply)) {
ftp.disconnect();
throw new IOException("Ftp delete server refused connection.");
}
if (!ftp.login("anonymous", "")) {
ftp.logout();
throw new IOException("FTP: server wrong passwd");
}
ftp.enterLocalPassiveMode();
log.debug("Deleted: " + ftp.deleteFile(fileToDelete));
ftp.logout();
} catch (Exception e) {
throw new IOException(e.getMessage());
}
}
| public static String getResourceFromURL(URL url, String acceptHeader) throws java.io.IOException {
HttpURLConnection urlConnection = (HttpURLConnection) url.openConnection();
urlConnection.setUseCaches(false);
urlConnection.setRequestProperty("Accept", acceptHeader);
urlConnection.setInstanceFollowRedirects(true);
BufferedReader input = new BufferedReader(new InputStreamReader(urlConnection.getInputStream()));
String content = "";
String line;
while ((line = input.readLine()) != null) {
content += line;
}
input.close();
return content;
}
| false |
644 | 11,481,709 | 21,754,658 | public boolean copy(File fromFile) throws IOException {
FileUtility toFile = this;
if (!fromFile.exists()) {
abort("FileUtility: no such source file: " + fromFile.getAbsolutePath());
return false;
}
if (!fromFile.isFile()) {
abort("FileUtility: can't copy directory: " + fromFile.getAbsolutePath());
return false;
}
if (!fromFile.canRead()) {
abort("FileUtility: source file is unreadable: " + fromFile.getAbsolutePath());
return false;
}
if (this.isDirectory()) toFile = (FileUtility) (new File(this, fromFile.getName()));
if (toFile.exists()) {
if (!toFile.canWrite()) {
abort("FileUtility: destination file is unwriteable: " + pathName);
return false;
}
} else {
String parent = toFile.getParent();
File dir = new File(parent);
if (!dir.exists()) {
abort("FileUtility: destination directory doesn't exist: " + parent);
return false;
}
if (dir.isFile()) {
abort("FileUtility: destination is not a directory: " + parent);
return false;
}
if (!dir.canWrite()) {
abort("FileUtility: destination directory is unwriteable: " + parent);
return false;
}
}
FileInputStream from = null;
FileOutputStream to = null;
try {
from = new FileInputStream(fromFile);
to = new FileOutputStream(toFile);
byte[] buffer = new byte[4096];
int bytes_read;
while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read);
} finally {
if (from != null) try {
from.close();
} catch (IOException e) {
;
}
if (to != null) try {
to.close();
} catch (IOException e) {
;
}
}
return true;
}
| public void actionPerformed(java.awt.event.ActionEvent e) {
JFileChooser fc = new JFileChooser();
fc.addChoosableFileFilter(new ImageFilter());
fc.setAccessory(new ImagePreview(fc));
int returnVal = fc.showDialog(AdministracionResorces.this, Messages.getString("gui.AdministracionResorces.8"));
if (returnVal == JFileChooser.APPROVE_OPTION) {
File file = fc.getSelectedFile();
String rutaGlobal = System.getProperty("user.dir") + "/" + rutaDatos + "imagenes/" + file.getName();
String rutaRelativa = rutaDatos + "imagenes/" + file.getName();
try {
FileInputStream fis = new FileInputStream(file);
FileOutputStream fos = new FileOutputStream(rutaGlobal, true);
FileChannel canalFuente = fis.getChannel();
FileChannel canalDestino = fos.getChannel();
canalFuente.transferTo(0, canalFuente.size(), canalDestino);
fis.close();
fos.close();
imagen.setImagenURL(rutaRelativa);
gui.getEntrenamientoIzquierdaLabel().setIcon(gui.getProcesadorDatos().escalaImageIcon(((Imagen) gui.getComboBoxImagenesIzquierda().getSelectedItem()).getImagenURL()));
gui.getEntrenamientoDerechaLabel().setIcon(gui.getProcesadorDatos().escalaImageIcon(((Imagen) gui.getComboBoxImagenesDerecha().getSelectedItem()).getImagenURL()));
buttonImagen.setIcon(new ImageIcon(getClass().getResource("/es/unizar/cps/tecnoDiscap/data/icons/view_sidetreeOK.png")));
labelImagenPreview.setIcon(gui.getProcesadorDatos().escalaImageIcon(imagen.getImagenURL()));
} catch (IOException ex) {
ex.printStackTrace();
}
} else {
}
}
| true |
645 | 18,298,937 | 16,466,519 | protected InputStream makeSignedRequestAndGetJSONData(String url) {
try {
if (consumer == null) loginOAuth();
} catch (Exception e) {
consumer = null;
e.printStackTrace();
}
DefaultHttpClient httpClient = new DefaultHttpClient();
URI uri;
InputStream data = null;
try {
uri = new URI(url);
HttpGet method = new HttpGet(uri);
consumer.sign(method);
HttpResponse response = httpClient.execute(method);
data = response.getEntity().getContent();
} catch (Exception e) {
e.printStackTrace();
}
return data;
}
| public static boolean encodeFileToFile(String infile, String outfile) {
boolean success = false;
java.io.InputStream in = null;
java.io.OutputStream out = null;
try {
in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE);
out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile));
byte[] buffer = new byte[65536];
int read = -1;
while ((read = in.read(buffer)) >= 0) {
out.write(buffer, 0, read);
}
success = true;
} catch (java.io.IOException exc) {
exc.printStackTrace();
} finally {
try {
in.close();
} catch (Exception exc) {
}
try {
out.close();
} catch (Exception exc) {
}
}
return success;
}
| false |
646 | 2,775,424 | 9,186,576 | protected void truncate(File file) {
LogLog.debug("Compression of file: " + file.getAbsolutePath() + " started.");
if (FileUtils.isFileOlder(file, ManagementFactory.getRuntimeMXBean().getStartTime())) {
File backupRoot = new File(getBackupDir());
if (!backupRoot.exists() && !backupRoot.mkdirs()) {
throw new AppenderInitializationError("Can't create backup dir for backup storage");
}
SimpleDateFormat df;
try {
df = new SimpleDateFormat(getBackupDateFormat());
} catch (Exception e) {
throw new AppenderInitializationError("Invalid date formate for backup files: " + getBackupDateFormat(), e);
}
String date = df.format(new Date(file.lastModified()));
File zipFile = new File(backupRoot, file.getName() + "." + date + ".zip");
ZipOutputStream zos = null;
FileInputStream fis = null;
try {
zos = new ZipOutputStream(new FileOutputStream(zipFile));
ZipEntry entry = new ZipEntry(file.getName());
entry.setMethod(ZipEntry.DEFLATED);
entry.setCrc(FileUtils.checksumCRC32(file));
zos.putNextEntry(entry);
fis = FileUtils.openInputStream(file);
byte[] buffer = new byte[1024];
int readed;
while ((readed = fis.read(buffer)) != -1) {
zos.write(buffer, 0, readed);
}
} catch (Exception e) {
throw new AppenderInitializationError("Can't create zip file", e);
} finally {
if (zos != null) {
try {
zos.close();
} catch (IOException e) {
LogLog.warn("Can't close zip file", e);
}
}
if (fis != null) {
try {
fis.close();
} catch (IOException e) {
LogLog.warn("Can't close zipped file", e);
}
}
}
if (!file.delete()) {
throw new AppenderInitializationError("Can't delete old log file " + file.getAbsolutePath());
}
}
}
| public static void copyFile(File file, String pathExport) throws IOException {
File out = new File(pathExport);
FileChannel sourceChannel = new FileInputStream(file).getChannel();
FileChannel destinationChannel = new FileOutputStream(out).getChannel();
sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel);
sourceChannel.close();
destinationChannel.close();
}
| true |
647 | 1,787,391 | 11,650,951 | private static void writeOneAttachment(Context context, Writer writer, OutputStream out, Attachment attachment) throws IOException, MessagingException {
writeHeader(writer, "Content-Type", attachment.mMimeType + ";\n name=\"" + attachment.mFileName + "\"");
writeHeader(writer, "Content-Transfer-Encoding", "base64");
writeHeader(writer, "Content-Disposition", "attachment;" + "\n filename=\"" + attachment.mFileName + "\";" + "\n size=" + Long.toString(attachment.mSize));
writeHeader(writer, "Content-ID", attachment.mContentId);
writer.append("\r\n");
InputStream inStream = null;
try {
Uri fileUri = Uri.parse(attachment.mContentUri);
inStream = context.getContentResolver().openInputStream(fileUri);
writer.flush();
Base64OutputStream base64Out = new Base64OutputStream(out);
IOUtils.copy(inStream, base64Out);
base64Out.close();
} catch (FileNotFoundException fnfe) {
} catch (IOException ioe) {
throw new MessagingException("Invalid attachment.", ioe);
}
}
| private Properties loadProperties(final String propertiesName) throws IOException {
Properties bundle = null;
final ClassLoader loader = Thread.currentThread().getContextClassLoader();
final URL url = loader.getResource(propertiesName);
if (url == null) {
throw new IOException("Properties file " + propertiesName + " not found");
}
final InputStream is = url.openStream();
if (is != null) {
bundle = new Properties();
bundle.load(is);
} else {
throw new IOException("Properties file " + propertiesName + " not avilable");
}
return bundle;
}
| false |
648 | 10,949,790 | 15,195,064 | private void loadDBpediaOntology() {
try {
URL url = new URL("http://downloads.dbpedia.org/3.6/dbpedia_3.6.owl.bz2");
InputStream is = new BufferedInputStream(url.openStream());
CompressorInputStream in = new CompressorStreamFactory().createCompressorInputStream("bzip2", is);
dbPediaOntology = OWLManager.createOWLOntologyManager().loadOntologyFromOntologyDocument(in);
reasoner = PelletReasonerFactory.getInstance().createNonBufferingReasoner(dbPediaOntology);
reasoner.precomputeInferences(InferenceType.CLASS_HIERARCHY);
} catch (MalformedURLException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
} catch (CompressorException e) {
e.printStackTrace();
} catch (OWLOntologyCreationException e) {
e.printStackTrace();
}
}
| public int[] do_it(final int[] x) {
int temp = 0;
int j = x.length;
while (j > 0) {
for (int i = 0; i < j - 1; i++) {
if (x[i] > x[i + 1]) {
temp = x[i];
x[i] = x[i + 1];
x[i + 1] = temp;
}
;
}
;
j--;
}
;
return x;
}
| false |
649 | 13,447,231 | 8,254,921 | public void copy(String pathFileIn, String pathFileOut) {
try {
File inputFile = new File(pathFileIn);
File outputFile = new File(pathFileOut);
FileReader in = new FileReader(inputFile);
File outDir = new File(DirOut);
if (!outDir.exists()) outDir.mkdirs();
FileWriter out = new FileWriter(outputFile);
int c;
while ((c = in.read()) != -1) out.write(c);
in.close();
out.close();
this.printColumn(inputFile.getName(), outputFile.getPath());
} catch (Exception e) {
e.printStackTrace();
}
}
| public static void copy(File src, File dest, boolean overwrite) throws IOException {
if (!src.exists()) throw new IOException("File source does not exists");
if (dest.exists()) {
if (!overwrite) throw new IOException("File destination already exists");
dest.delete();
} else {
dest.createNewFile();
}
InputStream is = new FileInputStream(src);
OutputStream os = new FileOutputStream(dest);
byte[] buffer = new byte[1024 * 4];
int len = 0;
while ((len = is.read(buffer)) > 0) {
os.write(buffer, 0, len);
}
os.close();
is.close();
}
| true |
650 | 18,628,318 | 9,737,790 | public static String generateDigest(String message, String DigestAlgorithm) {
try {
MessageDigest md = MessageDigest.getInstance(DigestAlgorithm);
md.update(message.getBytes(), 0, message.length());
return new BigInteger(1, md.digest()).toString(16);
} catch (NoSuchAlgorithmException nsae) {
return null;
}
}
| public String md5Encode(String pass) {
MessageDigest md = null;
try {
md = MessageDigest.getInstance("MD5");
} catch (NoSuchAlgorithmException e) {
e.printStackTrace();
}
md.update(pass.getBytes());
byte[] result = md.digest();
return new String(result);
}
| true |
651 | 105,319 | 14,483,567 | private String MD5Sum(String input) {
String hashtext = null;
try {
MessageDigest md = MessageDigest.getInstance("MD5");
md.reset();
md.update(input.getBytes());
byte[] digest = md.digest();
BigInteger bigInt = new BigInteger(1, digest);
hashtext = bigInt.toString(16);
while (hashtext.length() < 32) {
hashtext = "0" + hashtext;
}
} catch (NoSuchAlgorithmException e) {
e.printStackTrace();
}
return hashtext;
}
| private String md5(String... args) throws FlickrException {
try {
StringBuilder sb = new StringBuilder();
for (String str : args) {
sb.append(str);
}
MessageDigest md = MessageDigest.getInstance("MD5");
md.update(sb.toString().getBytes());
byte[] bytes = md.digest();
StringBuilder result = new StringBuilder();
for (byte b : bytes) {
String hx = Integer.toHexString(0xFF & b);
if (hx.length() == 1) {
hx = "0" + hx;
}
result.append(hx);
}
return result.toString();
} catch (Exception ex) {
throw new FlickrException(ex);
}
}
| true |
652 | 22,382,181 | 16,948,799 | public boolean copy(File src, File dest, byte[] b) {
if (src.isDirectory()) {
String[] ss = src.list();
for (int i = 0; i < ss.length; i++) if (!copy(new File(src, ss[i]), new File(dest, ss[i]), b)) return false;
return true;
}
delete(dest);
dest.getParentFile().mkdirs();
try {
FileInputStream fis = new FileInputStream(src);
try {
FileOutputStream fos = new FileOutputStream(dest);
try {
int read;
while ((read = fis.read(b)) != -1) fos.write(b, 0, read);
} finally {
try {
fos.close();
} catch (IOException ignore) {
}
register(dest);
}
} finally {
fis.close();
}
if (log.isDebugEnabled()) log.debug("Success: M-COPY " + src + " -> " + dest);
return true;
} catch (IOException e) {
log.error("Failed: M-COPY " + src + " -> " + dest, e);
return false;
}
}
| public static void fileCopy(final File src, final File dest, final boolean overwrite) throws IOException {
if (!dest.exists() || (dest.exists() && overwrite)) {
final FileChannel srcChannel = new FileInputStream(src).getChannel();
final FileChannel dstChannel = new FileOutputStream(dest).getChannel();
dstChannel.transferFrom(srcChannel, 0, srcChannel.size());
srcChannel.close();
dstChannel.close();
}
}
| true |
653 | 727,183 | 12,101,435 | public void convert(File src, File dest) throws IOException {
InputStream in = new BufferedInputStream(new FileInputStream(src));
DcmParser p = pfact.newDcmParser(in);
Dataset ds = fact.newDataset();
p.setDcmHandler(ds.getDcmHandler());
try {
FileFormat format = p.detectFileFormat();
if (format != FileFormat.ACRNEMA_STREAM) {
System.out.println("\n" + src + ": not an ACRNEMA stream!");
return;
}
p.parseDcmFile(format, Tags.PixelData);
if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) {
System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert");
return;
}
boolean hasPixelData = p.getReadTag() == Tags.PixelData;
boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12;
int pxlen = p.getReadLength();
if (hasPixelData) {
if (inflate) {
ds.putUS(Tags.BitsAllocated, 16);
pxlen = pxlen * 4 / 3;
}
if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) {
System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert");
return;
}
}
ds.putUI(Tags.StudyInstanceUID, uid(studyUID));
ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID));
ds.putUI(Tags.SOPInstanceUID, uid(instUID));
ds.putUI(Tags.SOPClassUID, classUID);
if (!ds.contains(Tags.NumberOfSamples)) {
ds.putUS(Tags.NumberOfSamples, 1);
}
if (!ds.contains(Tags.PhotometricInterpretation)) {
ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2");
}
if (fmi) {
ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian));
}
OutputStream out = new BufferedOutputStream(new FileOutputStream(dest));
try {
} finally {
ds.writeFile(out, encodeParam());
if (hasPixelData) {
if (!skipGroupLen) {
out.write(PXDATA_GROUPLEN);
int grlen = pxlen + 8;
out.write((byte) grlen);
out.write((byte) (grlen >> 8));
out.write((byte) (grlen >> 16));
out.write((byte) (grlen >> 24));
}
out.write(PXDATA_TAG);
out.write((byte) pxlen);
out.write((byte) (pxlen >> 8));
out.write((byte) (pxlen >> 16));
out.write((byte) (pxlen >> 24));
}
if (inflate) {
int b2, b3;
for (; pxlen > 0; pxlen -= 3) {
out.write(in.read());
b2 = in.read();
b3 = in.read();
out.write(b2 & 0x0f);
out.write(b2 >> 4 | ((b3 & 0x0f) << 4));
out.write(b3 >> 4);
}
} else {
for (; pxlen > 0; --pxlen) {
out.write(in.read());
}
}
out.close();
}
System.out.print('.');
} finally {
in.close();
}
}
| private void invokeTest(String queryfile, String target) {
try {
String query = IOUtils.toString(XPathMarkBenchmarkTest.class.getResourceAsStream(queryfile)).trim();
String args = EXEC_CMD + " \"" + query + "\" \"" + target + '"';
System.out.println("Invoke command: \n " + args);
Process proc = Runtime.getRuntime().exec(args, null, benchmarkDir);
InputStream is = proc.getInputStream();
File outFile = new File(outDir, queryfile + ".result");
IOUtils.copy(is, new FileOutputStream(outFile));
is.close();
int ret = proc.waitFor();
if (ret != 0) {
System.out.println("process exited with value : " + ret);
}
} catch (IOException ioe) {
throw new IllegalStateException(ioe);
} catch (InterruptedException irre) {
throw new IllegalStateException(irre);
}
}
| true |
654 | 1,015,744 | 21,722,036 | public static void copyFile(File in, File out) throws IOException {
FileChannel sourceChannel = new FileInputStream(in).getChannel();
try {
FileChannel destinationChannel = new FileOutputStream(out).getChannel();
try {
sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel);
} finally {
destinationChannel.close();
}
} finally {
sourceChannel.close();
}
}
| public void loadXML(URL flux, int status, File file) {
try {
SAXBuilder sbx = new SAXBuilder();
try {
if (file.exists()) {
file.delete();
}
if (!file.exists()) {
URLConnection conn = flux.openConnection();
conn.setConnectTimeout(5000);
conn.setReadTimeout(10000);
InputStream is = conn.getInputStream();
OutputStream out = new FileOutputStream(file);
byte buf[] = new byte[1024];
int len;
while ((len = is.read(buf)) > 0) out.write(buf, 0, len);
out.close();
is.close();
}
} catch (Exception e) {
Log.e(Constants.PROJECT_TAG, "Exeption retrieving XML", e);
}
try {
document = sbx.build(new FileInputStream(file));
} catch (Exception e) {
Log.e(Constants.PROJECT_TAG, "xml error ", e);
}
} catch (Exception e) {
Log.e(Constants.PROJECT_TAG, "TsukiQueryError", e);
}
if (document != null) {
root = document.getRootElement();
PopulateDatabase(root, status);
}
}
| true |
655 | 10,601,019 | 16,208,627 | public static void copyFile(File src, File dst) throws IOException {
InputStream in = new FileInputStream(src);
OutputStream out = new FileOutputStream(dst);
byte[] buf = new byte[1024];
int len;
while ((len = in.read(buf)) > 0) out.write(buf, 0, len);
in.close();
out.close();
}
| @Override
protected void doPost(final HttpServletRequest req, final HttpServletResponse resp) throws ServletException, IOException {
final String url = req.getParameter("url");
if (!isAllowed(url)) {
resp.setStatus(HttpServletResponse.SC_FORBIDDEN);
return;
}
final HttpClient client = new HttpClient();
client.getParams().setVersion(HttpVersion.HTTP_1_0);
final PostMethod method = new PostMethod(url);
method.getParams().setVersion(HttpVersion.HTTP_1_0);
method.setFollowRedirects(false);
final RequestEntity entity = new InputStreamRequestEntity(req.getInputStream());
method.setRequestEntity(entity);
try {
final int statusCode = client.executeMethod(method);
if (statusCode != -1) {
InputStream is = null;
ServletOutputStream os = null;
try {
is = method.getResponseBodyAsStream();
try {
os = resp.getOutputStream();
IOUtils.copy(is, os);
} finally {
if (os != null) {
try {
os.flush();
} catch (IOException ignored) {
}
}
}
} catch (IOException ioex) {
final String message = ioex.getMessage();
if (!"chunked stream ended unexpectedly".equals(message)) {
throw ioex;
}
} finally {
IOUtils.closeQuietly(is);
}
}
} finally {
method.releaseConnection();
}
}
| true |
656 | 6,513,769 | 13,325,917 | @Before
public void BeforeTheTest() throws Exception {
URL url = ProfileParserTest.class.getClassLoader().getResource("ca/uhn/hl7v2/conf/parser/tests/example_ack.xml");
URLConnection conn = url.openConnection();
InputStream instream = conn.getInputStream();
if (instream == null) throw new Exception("can't find the xml file");
BufferedReader in = new BufferedReader(new InputStreamReader(instream));
int tmp = 0;
StringBuffer buf = new StringBuffer();
while ((tmp = in.read()) != -1) {
buf.append((char) tmp);
}
profileString = buf.toString();
}
| public static void copy(File fromFile, File toFile) throws IOException {
if (!fromFile.exists()) throw new IOException("FileCopy: " + "no such source file: " + fromFile.getCanonicalPath());
if (!fromFile.isFile()) throw new IOException("FileCopy: " + "can't copy directory: " + fromFile.getCanonicalPath());
if (!fromFile.canRead()) throw new IOException("FileCopy: " + "source file is unreadable: " + fromFile.getCanonicalPath());
if (toFile.isDirectory()) toFile = new File(toFile, fromFile.getName());
if (toFile.exists()) {
if (!toFile.canWrite()) throw new IOException("FileCopy: " + "destination file is unwriteable: " + toFile.getCanonicalPath());
throw new IOException("FileCopy: " + "existing file was not overwritten.");
} else {
String parent = toFile.getParent();
if (parent == null) parent = System.getProperty("user.dir");
File dir = new File(parent);
if (!dir.exists()) throw new IOException("FileCopy: " + "destination directory doesn't exist: " + parent);
if (dir.isFile()) throw new IOException("FileCopy: " + "destination is not a directory: " + parent);
if (!dir.canWrite()) throw new IOException("FileCopy: " + "destination directory is unwriteable: " + parent);
}
FileInputStream from = null;
FileOutputStream to = null;
try {
from = new FileInputStream(fromFile);
to = new FileOutputStream(toFile);
byte[] buffer = new byte[1024 * 1024];
int bytesRead;
while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead);
if (fromFile.isHidden()) {
}
toFile.setLastModified(fromFile.lastModified());
toFile.setExecutable(fromFile.canExecute());
toFile.setReadable(fromFile.canRead());
toFile.setWritable(toFile.canWrite());
} finally {
if (from != null) try {
from.close();
} catch (IOException e) {
;
}
if (to != null) try {
to.close();
} catch (IOException e) {
;
}
}
}
| false |
657 | 16,520,895 | 22,066,329 | public static String encodeFromFile(String filename) throws java.io.IOException, URISyntaxException {
String encodedData = null;
Base641.InputStream bis = null;
File file;
try {
URL url = new URL(filename);
URLConnection conn = url.openConnection();
file = new File("myfile.doc");
java.io.InputStream inputStream = (java.io.InputStream) conn.getInputStream();
FileOutputStream out = new FileOutputStream(file);
byte buf[] = new byte[1024];
int len;
while ((len = inputStream.read(buf)) > 0) out.write(buf, 0, len);
out.close();
inputStream.close();
byte[] buffer = new byte[Math.max((int) (file.length() * 1.4), 40)];
int length = 0;
int numBytes = 0;
bis = new Base641.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(file)), Base641.ENCODE);
while ((numBytes = bis.read(buffer, length, 4096)) >= 0) {
length += numBytes;
}
encodedData = new String(buffer, 0, length, Base641.PREFERRED_ENCODING);
} catch (java.io.IOException e) {
throw e;
} finally {
try {
bis.close();
} catch (Exception e) {
}
}
return encodedData;
}
| protected final void loadLogFile(String filename) throws IOException {
cleanUp(true, false);
InputStream is = null;
OutputStream os = null;
File f = File.createTempFile("log", null);
try {
is = getClass().getResourceAsStream(filename);
Assert.isTrue(is != null, "File not found: " + filename);
os = new FileOutputStream(f);
IOUtils.copy(is, os);
setLogFile(f);
} finally {
IOUtils.closeQuietly(is);
IOUtils.closeQuietly(os);
}
}
| true |
658 | 23,482,443 | 9,805,889 | public static String getDocumentAsString(URL url) throws IOException {
StringBuffer result = new StringBuffer();
BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream(), "UTF8"));
String line = "";
while (line != null) {
result.append(line);
line = in.readLine();
}
return result.toString();
}
| @Override
public void onClick(View v) {
username = textusername.getText().toString();
password = textpassword.getText().toString();
ArrayList<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>();
nameValuePairs.add(new name_value("uname", username));
nameValuePairs.add(new name_value("upass", password));
try {
HttpClient httpclient = new DefaultHttpClient();
HttpPost httppost = new HttpPost("http://www.gotrackit.net/server/check_user.php");
httppost.setEntity(new UrlEncodedFormEntity(nameValuePairs));
HttpResponse response = httpclient.execute(httppost);
HttpEntity entity = response.getEntity();
is = entity.getContent();
} catch (Exception e) {
Log.e("log_tag", "Error in http connection" + e.toString());
}
try {
BufferedReader reader = new BufferedReader(new InputStreamReader(is, "iso-8859-1"), 8);
sb = new StringBuilder();
sb.append(reader.readLine() + "\n");
String line = "0";
while ((line = reader.readLine()) != null) {
sb.append(line + "\n");
}
is.close();
result = sb.toString();
} catch (Exception e) {
Log.e("log_tag", "Error converting result " + e.toString());
}
if (result.contains("reject")) {
Context context = getApplicationContext();
int duration = Toast.LENGTH_SHORT;
String wrong = "Invalid Username or Password";
Toast toast = Toast.makeText(context, wrong, duration);
toast.show();
} else {
MyApp uid = (MyApp) getApplicationContext();
uid.setStringValue(result);
Intent myintent = new Intent(v.getContext(), UserMap.class);
startActivityForResult(myintent, 0);
}
}
| false |
659 | 18,142,979 | 7,396,681 | private String copyTutorial() throws IOException {
File inputFile = new File(getFilenameForOriginalTutorial());
File outputFile = new File(getFilenameForCopiedTutorial());
FileReader in = new FileReader(inputFile);
FileWriter out = new FileWriter(outputFile);
int c;
while ((c = in.read()) != -1) out.write(c);
in.close();
out.close();
return getFilenameForCopiedTutorial();
}
| public static boolean copy(File src, FileSystem dstFS, Path dst, boolean deleteSource, Configuration conf) throws IOException {
dst = checkDest(src.getName(), dstFS, dst, false);
if (src.isDirectory()) {
if (!dstFS.mkdirs(dst)) {
return false;
}
File contents[] = src.listFiles();
for (int i = 0; i < contents.length; i++) {
copy(contents[i], dstFS, new Path(dst, contents[i].getName()), deleteSource, conf);
}
} else if (src.isFile()) {
InputStream in = null;
OutputStream out = null;
try {
in = new FileInputStream(src);
out = dstFS.create(dst);
IOUtils.copyBytes(in, out, conf);
} catch (IOException e) {
IOUtils.closeStream(out);
IOUtils.closeStream(in);
throw e;
}
} else {
throw new IOException(src.toString() + ": No such file or directory");
}
if (deleteSource) {
return FileUtil.fullyDelete(src);
} else {
return true;
}
}
| true |
660 | 13,099,598 | 18,811,090 | public void deleteUser(String userID) throws XregistryException {
try {
userID = Utils.canonicalizeDN(userID);
Connection connection = context.createConnection();
connection.setAutoCommit(false);
try {
PreparedStatement statement1 = connection.prepareStatement(DELETE_USER_SQL_MAIN);
statement1.setString(1, userID);
statement1.executeUpdate();
PreparedStatement statement2 = connection.prepareStatement(DELETE_USER_SQL_DEPEND);
statement2.setString(1, userID);
statement2.executeUpdate();
connection.commit();
Collection<Group> groupList = groups.values();
for (Group group : groupList) {
group.removeUser(userID);
}
log.info("Delete User " + userID);
} catch (SQLException e) {
connection.rollback();
throw new XregistryException(e);
} finally {
context.closeConnection(connection);
}
} catch (SQLException e) {
throw new XregistryException(e);
}
}
| public static int doPost(String urlString, String username, String password, Map<String, String> parameters) throws IOException {
PrintWriter out = null;
try {
URL url = new URL(urlString);
URLConnection connection = url.openConnection();
if (username != null && password != null) {
String encoding = base64Encode(username + ':' + password);
connection.setRequestProperty("Authorization", "Basic " + encoding);
}
connection.setDoOutput(true);
out = new PrintWriter(connection.getOutputStream());
boolean first = true;
for (Map.Entry<String, String> entry : parameters.entrySet()) {
if (first) {
first = false;
} else {
out.print('&');
}
out.print(entry.getKey());
out.print('=');
out.print(URLEncoder.encode(entry.getValue(), "UTF-8"));
}
out.close();
connection.connect();
if (!(connection instanceof HttpURLConnection)) {
throw new IOException();
}
return ((HttpURLConnection) connection).getResponseCode();
} catch (IOException ex) {
throw ex;
} finally {
if (out != null) {
out.close();
}
}
}
| false |
661 | 4,960,419 | 10,601,019 | public static boolean writeFileByChars(Reader pReader, File pFile, boolean pAppend) {
boolean flag = false;
try {
FileWriter fw = new FileWriter(pFile, pAppend);
IOUtils.copy(pReader, fw);
fw.flush();
fw.close();
pReader.close();
flag = true;
} catch (Exception e) {
LOG.error("将字符流写入�?" + pFile.getName() + "出现异常�?", e);
}
return flag;
}
| public static void copyFile(File src, File dst) throws IOException {
InputStream in = new FileInputStream(src);
OutputStream out = new FileOutputStream(dst);
byte[] buf = new byte[1024];
int len;
while ((len = in.read(buf)) > 0) out.write(buf, 0, len);
in.close();
out.close();
}
| true |
662 | 19,322,907 | 10,271,558 | @Test
public void test_baseMaterialsForTypeID_StringInsteadOfID() throws Exception {
URL url = new URL(baseUrl + "/baseMaterialsForTypeID/blah-blah");
HttpURLConnection connection = (HttpURLConnection) url.openConnection();
connection.setRequestMethod("GET");
connection.setRequestProperty("Accept", "application/json");
assertThat(connection.getResponseCode(), equalTo(400));
connection = (HttpURLConnection) url.openConnection();
connection.setRequestMethod("GET");
connection.setRequestProperty("Accept", "application/xml");
assertThat(connection.getResponseCode(), equalTo(400));
}
| private void processBasicContent() {
String[] packageNames = sourceCollector.getPackageNames();
for (int i = 0; i < packageNames.length; i++) {
XdcSource[] sources = sourceCollector.getXdcSources(packageNames[i]);
File dir = new File(outputDir, packageNames[i]);
dir.mkdirs();
Set pkgDirs = new HashSet();
for (int j = 0; j < sources.length; j++) {
XdcSource source = sources[j];
Properties patterns = source.getPatterns();
if (patterns != null) {
tables.put("patterns", patterns);
}
pkgDirs.add(source.getFile().getParentFile());
DialectHandler dialectHandler = source.getDialectHandler();
Writer out = null;
try {
String sourceFilePath = source.getFile().getAbsolutePath();
source.setProcessingProperties(baseProperties, j > 0 ? sources[j - 1].getFileName() : null, j < sources.length - 1 ? sources[j + 1].getFileName() : null);
String rootComment = XslUtils.transformToString(sourceFilePath, XSL_PKG + "/source-header.xsl", tables);
source.setRootComment(rootComment);
Document htmlDoc = XslUtils.transform(sourceFilePath, encoding, dialectHandler.getXslResourcePath(), tables);
if (LOG.isInfoEnabled()) {
LOG.info("Processing source file " + sourceFilePath);
}
out = IOUtils.getWriter(new File(dir, source.getFile().getName() + ".html"), docencoding);
XmlUtils.printHtml(out, htmlDoc);
if (sourceProcessor != null) {
sourceProcessor.processSource(source, encoding, docencoding);
}
XdcSource.clearProcessingProperties(baseProperties);
} catch (XmlException e) {
LOG.error(e.getMessage(), e);
} catch (IOException e) {
LOG.error(e.getMessage(), e);
} finally {
if (out != null) {
try {
out.close();
} catch (IOException e) {
LOG.error(e.getMessage(), e);
}
}
}
}
for (Iterator iter = pkgDirs.iterator(); iter.hasNext(); ) {
File docFilesDir = new File((File) iter.next(), "xdc-doc-files");
if (docFilesDir.exists() && docFilesDir.isDirectory()) {
File targetDir = new File(dir, "xdc-doc-files");
targetDir.mkdirs();
try {
IOUtils.copyTree(docFilesDir, targetDir);
} catch (IOException e) {
LOG.error(e.getMessage(), e);
}
}
}
}
}
| false |
663 | 8,708,611 | 5,822,585 | private String extractFileFromZip(ZipFile zip, String fileName) throws IOException {
String contents = null;
ZipEntry entry = zip.getEntry(fileName);
if (entry != null) {
InputStream input = zip.getInputStream(entry);
ByteArrayOutputStream buffer = new ByteArrayOutputStream();
IOUtils.copyAndClose(input, buffer);
contents = buffer.toString();
}
return contents;
}
| public static void copyFile(final FileInputStream in, final File out) throws IOException {
final FileChannel inChannel = in.getChannel();
final FileChannel outChannel = new FileOutputStream(out).getChannel();
try {
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (final IOException e) {
throw e;
} finally {
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
}
}
| true |
664 | 14,711,178 | 7,427,547 | private Response doLoad(URL url, URL referer, String postData) throws IOException {
URLConnection connection = PROXY == null ? url.openConnection() : url.openConnection(PROXY);
COOKIES.writeCookies(connection);
connection.setRequestProperty("User-Agent", USER_AGENT);
if (referer != null) {
connection.setRequestProperty("Referer", referer.toString());
}
if (postData != null) {
connection.setDoInput(true);
connection.setDoOutput(true);
connection.setUseCaches(false);
connection.setRequestProperty("CONTENT_LENGTH", "" + postData.length());
OutputStream os = connection.getOutputStream();
OutputStreamWriter osw = new OutputStreamWriter(os);
osw.write(postData);
osw.flush();
osw.close();
}
connection.connect();
COOKIES.readCookies(connection);
previouseUrl = url;
return responceInstance(url, connection.getInputStream(), connection.getContentType());
}
| public List tree(String cat, int branch) {
Pattern p = Pattern.compile("<a href=\"javascript:checkBranch\\(([0-9]+), 'true'\\)\">([^<]*)</a>");
Matcher m;
List res = new ArrayList();
URL url;
HttpURLConnection conn;
System.out.println();
try {
url = new URL("http://cri-srv-ade.insa-toulouse.fr:8080/ade/standard/gui/tree.jsp?category=trainee&expand=false&forceLoad=false&reload=false&scroll=0");
conn = (HttpURLConnection) url.openConnection();
conn.setRequestMethod("GET");
conn.setDoOutput(true);
conn.setDoInput(true);
conn.setRequestProperty("Cookie", sessionId);
BufferedReader i = new BufferedReader(new InputStreamReader(conn.getInputStream()));
String line;
while ((line = i.readLine()) != null) {
m = p.matcher(line);
if (m.find()) {
trainee.add(new Node(Integer.parseInt(m.group(1)), m.group(2)));
System.out.println(m.group(1) + " - " + m.group(2));
}
}
} catch (Exception e2) {
e2.printStackTrace();
}
return res;
}
| false |
665 | 20,493,867 | 15,609,120 | @Override
public void execute(JobExecutionContext context) throws JobExecutionException {
super.execute(context);
debug("Start execute job " + this.getClass().getName());
try {
String name = "nixspam-ip.dump.gz";
String f = this.path_app_root + "/" + this.properties.get("dir") + "/";
try {
org.apache.commons.io.FileUtils.forceMkdir(new File(f));
} catch (IOException ex) {
fatal("IOException", ex);
}
f += "/" + name;
String url = "http://www.dnsbl.manitu.net/download/" + name;
debug("(1) - start download: " + url);
com.utils.HttpUtil.downloadData(url, f);
com.utils.IOUtil.unzip(f, f.replace(".gz", ""));
File file_to_read = new File(f.replaceAll(".gz", ""));
BigFile lines = null;
try {
lines = new BigFile(file_to_read.toString());
} catch (Exception e) {
fatal("Excpetion", e);
return;
}
try {
Statement stat = conn_url.createStatement();
stat.executeUpdate(properties.get("query_delete"));
stat.close();
} catch (SQLException e) {
fatal("SQLException", e);
}
try {
conn_url.setAutoCommit(false);
} catch (SQLException e) {
fatal("SQLException", e);
}
boolean ok = true;
int i = 0;
for (String line : lines) {
if (StringUtil.isEmpty(line) || line.indexOf(" ") == -1) {
continue;
}
try {
line = line.substring(line.indexOf(" "));
line = line.trim();
if (getIPException(line)) {
continue;
}
Statement stat = this.conn_url.createStatement();
stat.executeUpdate("insert into blacklist(url) values('" + line + "')");
stat.close();
i++;
} catch (SQLException e) {
fatal("SQLException", e);
try {
conn_url.rollback();
} catch (SQLException ex) {
fatal("SQLException", ex);
}
ok = false;
break;
}
}
boolean del = file_to_read.delete();
debug("File " + file_to_read + " del:" + del);
name = "spam-ip.com_" + DateTimeUtil.getNowWithFormat("MM-dd-yyyy") + ".csv";
f = this.path_app_root + "/" + this.properties.get("dir") + "/";
org.apache.commons.io.FileUtils.forceMkdir(new File(f));
f += "/" + name;
url = "http://spam-ip.com/csv_dump/" + name;
debug("(2) - start download: " + url);
com.utils.HttpUtil.downloadData(url, f);
file_to_read = new File(f);
try {
lines = new BigFile(file_to_read.toString());
} catch (Exception e) {
fatal("Exception", e);
return;
}
try {
conn_url.setAutoCommit(false);
} catch (SQLException e) {
fatal("SQLException", e);
}
ok = true;
for (String line : lines) {
if (StringUtil.isEmpty(line) || line.indexOf(" ") == -1) {
continue;
}
try {
line = line.split(",")[1];
line = line.trim();
if (getIPException(line)) {
continue;
}
Statement stat = this.conn_url.createStatement();
stat.executeUpdate("insert into blacklist(url) values('" + line + "')");
stat.close();
i++;
} catch (SQLException e) {
fatal("SQLException", e);
try {
conn_url.rollback();
} catch (SQLException ex) {
fatal("SQLException", ex);
}
ok = false;
break;
}
}
del = file_to_read.delete();
debug("File " + file_to_read + " del:" + del);
if (ok) {
debug("Import della BlackList Concluso tot righe: " + i);
try {
conn_url.commit();
} catch (SQLException e) {
fatal("SQLException", e);
}
} else {
fatal("Problemi con la Blacklist");
}
try {
conn_url.setAutoCommit(true);
} catch (SQLException e) {
fatal("SQLException", e);
}
try {
Statement stat = this.conn_url.createStatement();
stat.executeUpdate("VACUUM");
stat.close();
} catch (SQLException e) {
fatal("SQLException", e);
}
} catch (IOException ex) {
fatal("IOException", ex);
}
debug("End execute job " + this.getClass().getName());
}
| private boolean serverOK(String serverAddress, String serverPort) {
boolean status = false;
String serverString = serverAddress + ":" + serverPort + MolConvertInNodeModel.SERVER_WSDL_PATH;
System.out.println("connecting to " + serverString + "...");
try {
java.net.URL url = new java.net.URL(serverString);
try {
java.net.HttpURLConnection connection = (java.net.HttpURLConnection) url.openConnection();
status = readContents(connection);
if (status) {
JOptionPane.showMessageDialog(this.getPanel(), "Connection to Server is OK");
}
} catch (Exception connEx) {
JOptionPane.showMessageDialog(this.getPanel(), connEx.getMessage());
logger.error(connEx.getMessage());
}
} catch (java.net.MalformedURLException urlEx) {
JOptionPane.showMessageDialog(this.getPanel(), urlEx.getMessage());
logger.error(urlEx.getMessage());
}
return status;
}
| false |
666 | 264,493 | 10,345,032 | public static void doVersionCheck(View view) {
view.showWaitCursor();
try {
URL url = new URL(jEdit.getProperty("version-check.url"));
InputStream in = url.openStream();
BufferedReader bin = new BufferedReader(new InputStreamReader(in));
String line;
String develBuild = null;
String stableBuild = null;
while ((line = bin.readLine()) != null) {
if (line.startsWith(".build")) develBuild = line.substring(6).trim(); else if (line.startsWith(".stablebuild")) stableBuild = line.substring(12).trim();
}
bin.close();
if (develBuild != null && stableBuild != null) {
doVersionCheck(view, stableBuild, develBuild);
}
} catch (IOException e) {
String[] args = { jEdit.getProperty("version-check.url"), e.toString() };
GUIUtilities.error(view, "read-error", args);
}
view.hideWaitCursor();
}
| private String GetStringFromURL(String URL) {
InputStream in = null;
InputStreamReader inputStreamReader = null;
BufferedReader bufferedReader = null;
String outstring = "";
try {
java.net.URL url = new java.net.URL(URL);
in = url.openStream();
inputStreamReader = new InputStreamReader(in);
bufferedReader = new BufferedReader(inputStreamReader);
StringBuffer out = new StringBuffer("");
String nextLine;
String newline = System.getProperty("line.separator");
while ((nextLine = bufferedReader.readLine()) != null) {
out.append(nextLine);
out.append(newline);
}
outstring = new String(out);
} catch (IOException e) {
System.out.println("Failed to read from " + URL);
outstring = "";
} finally {
try {
bufferedReader.close();
inputStreamReader.close();
} catch (Exception e) {
}
}
return outstring;
}
| true |
667 | 23,597,499 | 427,727 | private File uploadFile(InputStream inputStream, File file) {
FileOutputStream fileOutputStream = null;
try {
File dir = file.getParentFile();
if (!dir.exists()) {
dir.mkdirs();
}
FileUtils.touch(file);
fileOutputStream = new FileOutputStream(file);
IOUtils.copy(inputStream, fileOutputStream);
} catch (IOException e) {
throw new FileOperationException("Failed to save uploaded image", e);
} finally {
try {
if (fileOutputStream != null) {
fileOutputStream.close();
}
} catch (IOException e) {
LOGGER.warn("Failed to close resources on uploaded file", e);
}
}
return file;
}
| public BufferedWriter createOutputStream(String inFile, String outFile) throws IOException {
int k_blockSize = 1024;
int byteCount;
char[] buf = new char[k_blockSize];
File ofp = new File(outFile);
ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(ofp));
zos.setMethod(ZipOutputStream.DEFLATED);
OutputStreamWriter osw = new OutputStreamWriter(zos, "ISO-8859-1");
BufferedWriter bw = new BufferedWriter(osw);
ZipEntry zot = null;
File ifp = new File(inFile);
ZipInputStream zis = new ZipInputStream(new FileInputStream(ifp));
InputStreamReader isr = new InputStreamReader(zis, "ISO-8859-1");
BufferedReader br = new BufferedReader(isr);
ZipEntry zit = null;
while ((zit = zis.getNextEntry()) != null) {
if (zit.getName().equals("content.xml")) {
continue;
}
zot = new ZipEntry(zit.getName());
zos.putNextEntry(zot);
while ((byteCount = br.read(buf, 0, k_blockSize)) >= 0) bw.write(buf, 0, byteCount);
bw.flush();
zos.closeEntry();
}
zos.putNextEntry(new ZipEntry("content.xml"));
bw.flush();
osw = new OutputStreamWriter(zos, "UTF8");
bw = new BufferedWriter(osw);
return bw;
}
| true |
668 | 9,324,781 | 7,398,604 | public void parse(InputStream stream, ContentHandler handler, Metadata metadata, ParseContext context) throws IOException, SAXException, TikaException {
String name = metadata.get(Metadata.RESOURCE_NAME_KEY);
if (name != null && wanted.containsKey(name)) {
FileOutputStream out = new FileOutputStream(wanted.get(name));
IOUtils.copy(stream, out);
out.close();
} else {
if (downstreamParser != null) {
downstreamParser.parse(stream, handler, metadata, context);
}
}
}
| @Override
public Collection<IAuthor> doImport() throws Exception {
progress.initialize(2, "Ściągam autorów amerykańskich");
String url = "http://pl.wikipedia.org/wiki/Kategoria:Ameryka%C5%84scy_autorzy_fantastyki";
UrlResource resource = new UrlResource(url);
InputStream urlInputStream = resource.getInputStream();
StringWriter writer = new StringWriter();
IOUtils.copy(urlInputStream, writer);
progress.advance("Parsuję autorów amerykańskich");
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder = factory.newDocumentBuilder();
String httpDoc = writer.toString();
httpDoc = httpDoc.replaceFirst("(?s)<!DOCTYPE.+?>\\n", "");
httpDoc = httpDoc.replaceAll("(?s)<script.+?</script>", "");
httpDoc = "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>\n" + httpDoc;
ByteArrayInputStream byteInputStream = new ByteArrayInputStream(httpDoc.getBytes("UTF-8"));
Document doc = builder.parse(byteInputStream);
ArrayList<String> authorNames = new ArrayList<String>();
ArrayList<IAuthor> authors = new ArrayList<IAuthor>();
XPathFactory xpathFactory = XPathFactory.newInstance();
XPath xpath = xpathFactory.newXPath();
NodeList list = (NodeList) xpath.evaluate("//ul/li/div/div/a", doc, XPathConstants.NODESET);
for (int i = 0; i < list.getLength(); i++) {
String name = list.item(i).getTextContent();
if (StringUtils.isNotBlank(name)) {
authorNames.add(name);
}
}
list = (NodeList) xpath.evaluate("//td/ul/li/a", doc, XPathConstants.NODESET);
for (int i = 0; i < list.getLength(); i++) {
String name = list.item(i).getTextContent();
if (StringUtils.isNotBlank(name)) {
authorNames.add(name);
}
}
for (String name : authorNames) {
int idx = name.lastIndexOf(' ');
String fname = name.substring(0, idx).trim();
String lname = name.substring(idx + 1).trim();
authors.add(new Author(fname, lname));
}
progress.advance("Wykonano");
return authors;
}
| true |
669 | 4,603,066 | 5,656,506 | public User createUser(Map userData) throws HamboFatalException {
DBConnection con = null;
try {
con = DBServiceManager.allocateConnection();
con.setAutoCommit(false);
String userId = (String) userData.get(HamboUser.USER_ID);
String sql = "insert into user_UserAccount " + "(userid,firstname,lastname,street,zipcode,city," + "province,country,email,cellph,gender,password," + "language,timezn,birthday,datecreated,lastlogin," + "disabled,wapsigned,ldapInSync,offerings,firstcb) " + "values (?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?,?)";
PreparedStatement ps = con.prepareStatement(sql);
ps.setString(1, userId);
ps.setString(2, (String) userData.get(HamboUser.FIRST_NAME));
ps.setString(3, (String) userData.get(HamboUser.LAST_NAME));
ps.setString(4, (String) userData.get(HamboUser.STREET_ADDRESS));
ps.setString(5, (String) userData.get(HamboUser.ZIP_CODE));
ps.setString(6, (String) userData.get(HamboUser.CITY));
ps.setString(7, (String) userData.get(HamboUser.STATE));
ps.setString(8, (String) userData.get(HamboUser.COUNTRY));
ps.setString(9, (String) userData.get(HamboUser.EXTERNAL_EMAIL_ADDRESS));
ps.setString(10, (String) userData.get(HamboUser.MOBILE_NUMBER));
ps.setString(11, (String) userData.get(HamboUser.GENDER));
ps.setString(12, (String) userData.get(HamboUser.PASSWORD));
ps.setString(13, (String) userData.get(HamboUser.LANGUAGE));
ps.setString(14, (String) userData.get(HamboUser.TIME_ZONE));
java.sql.Date date = (java.sql.Date) userData.get(HamboUser.BIRTHDAY);
if (date != null) ps.setDate(15, date); else ps.setNull(15, Types.DATE);
date = (java.sql.Date) userData.get(HamboUser.CREATED);
if (date != null) ps.setDate(16, date); else ps.setNull(16, Types.DATE);
date = (java.sql.Date) userData.get(HamboUser.LAST_LOGIN);
if (date != null) ps.setDate(17, date); else ps.setNull(17, Types.DATE);
Boolean bool = (Boolean) userData.get(HamboUser.DISABLED);
if (bool != null) ps.setBoolean(18, bool.booleanValue()); else ps.setBoolean(18, UserAccountInfo.DEFAULT_DISABLED);
bool = (Boolean) userData.get(HamboUser.WAP_ACCOUNT);
if (bool != null) ps.setBoolean(19, bool.booleanValue()); else ps.setBoolean(19, UserAccountInfo.DEFAULT_WAP_ACCOUNT);
bool = (Boolean) userData.get(HamboUser.LDAP_IN_SYNC);
if (bool != null) ps.setBoolean(20, bool.booleanValue()); else ps.setBoolean(20, UserAccountInfo.DEFAULT_LDAP_IN_SYNC);
bool = (Boolean) userData.get(HamboUser.OFFERINGS);
if (bool != null) ps.setBoolean(21, bool.booleanValue()); else ps.setBoolean(21, UserAccountInfo.DEFAULT_OFFERINGS);
ps.setString(22, (String) userData.get(HamboUser.COBRANDING_ID));
con.executeUpdate(ps, null);
ps = con.prepareStatement(DBUtil.getQueryCurrentOID(con, "user_UserAccount", "newoid"));
ResultSet rs = con.executeQuery(ps, null);
if (rs.next()) {
OID newOID = new OID(rs.getBigDecimal("newoid").doubleValue());
userData.put(HamboUser.OID, newOID);
}
con.commit();
} catch (Exception ex) {
if (con != null) try {
con.rollback();
} catch (SQLException sqlex) {
}
throw new HamboFatalException(MSG_INSERT_FAILED, ex);
} finally {
if (con != null) try {
con.reset();
} catch (SQLException ex) {
}
if (con != null) con.release();
}
return buildUser(userData);
}
| private void copyFile(File source, File target) throws IOException {
FileChannel srcChannel = new FileInputStream(source).getChannel();
FileChannel dstChannel = new FileOutputStream(target).getChannel();
dstChannel.transferFrom(srcChannel, 0, srcChannel.size());
srcChannel.close();
dstChannel.close();
}
| false |
670 | 6,190,160 | 23,294,396 | public void xtest1() throws Exception {
InputStream input = new FileInputStream("C:/Documentos/j931_01.pdf");
InputStream tmp = new ITextManager().cut(input, 3, 8);
FileOutputStream output = new FileOutputStream("C:/temp/split.pdf");
IOUtils.copy(tmp, output);
input.close();
tmp.close();
output.close();
}
| public static void copyFile(File in, File out) throws IOException {
FileChannel inChannel = new FileInputStream(in).getChannel();
FileOutputStream fos = new FileOutputStream(out);
FileChannel outChannel = fos.getChannel();
try {
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (IOException e) {
throw e;
} finally {
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
fos.flush();
fos.close();
}
}
| true |
671 | 4,643,706 | 4,071,092 | private static void zip(ZipOutputStream aOutputStream, final File[] aFiles, final String sArchive, final URI aRootURI, final String sFilter) throws FileError {
boolean closeStream = false;
if (aOutputStream == null) try {
aOutputStream = new ZipOutputStream(new FileOutputStream(sArchive));
closeStream = true;
} catch (final FileNotFoundException e) {
throw new FileError("Can't create ODF file!", e);
}
try {
try {
for (final File curFile : aFiles) {
aOutputStream.putNextEntry(new ZipEntry(URLDecoder.decode(aRootURI.relativize(curFile.toURI()).toASCIIString(), "UTF-8")));
if (curFile.isDirectory()) {
aOutputStream.closeEntry();
FileUtils.zip(aOutputStream, FileUtils.getFiles(curFile, sFilter), sArchive, aRootURI, sFilter);
continue;
}
final FileInputStream inputStream = new FileInputStream(curFile);
for (int i; (i = inputStream.read(FileUtils.BUFFER)) != -1; ) aOutputStream.write(FileUtils.BUFFER, 0, i);
inputStream.close();
aOutputStream.closeEntry();
}
} finally {
if (closeStream && aOutputStream != null) aOutputStream.close();
}
} catch (final IOException e) {
throw new FileError("Can't zip file to archive!", e);
}
if (closeStream) DocumentController.getStaticLogger().fine(aFiles.length + " files and folders zipped as " + sArchive);
}
| public static String harvestForUser(Node userNode, String alias, Boolean all) {
FTPClient client = new FTPClient();
OutputStream outStream = null;
Calendar filterCal = Calendar.getInstance();
filterCal.set(Calendar.DAY_OF_MONTH, filterCal.get(Calendar.DAY_OF_MONTH) - 1);
Date aDayAgo = filterCal.getTime();
String outputRecord = "";
try {
Session session = CustomSystemSession.create(r);
client.connect(ftpHostname);
client.login(ftpUsername, ftpPassword);
FTPFile[] users = client.listFiles();
if (users != null) {
for (FTPFile user : users) {
String userName = user.getName();
if (alias.equals(userName)) {
outputRecord += "Found account " + userName + ".\n";
client.changeWorkingDirectory("/" + userName + "/");
FTPFile[] experiments = client.listFiles();
if (experiments != null && userNode != null) {
for (FTPFile experiment : experiments) {
String experimentName = experiment.getName();
outputRecord += "Exploring " + userName + "/" + experimentName + ".\n";
client.changeWorkingDirectory("/" + userName + "/" + experimentName + "/");
FTPFile[] datasets = client.listFiles();
if (datasets != null) {
for (FTPFile dataset : datasets) {
String datasetName = dataset.getName();
outputRecord += "Exploring " + userName + "/" + experimentName + "/" + datasetName + ".\n";
client.changeWorkingDirectory("/" + userName + "/" + experimentName + "/" + datasetName + "/");
Date collectionDate = dataset.getTimestamp().getTime();
if (collectionDate.after(aDayAgo) || all) {
FTPFile[] images = client.listFiles();
if (images != null) {
for (FTPFile image : images) {
outputRecord += processImage(userName, experimentName, datasetName, collectionDate, image, client, userNode, session);
}
}
}
}
}
}
}
}
}
}
client.logout();
} catch (IOException ioe) {
log.info("Error communicating with FTP server.");
log.error("Error communicating with FTP server.", ioe);
ioe.printStackTrace();
} catch (RepositoryException ioe) {
log.info("Error communicating with repository.");
log.error("Error communicating with repository.", ioe);
ioe.printStackTrace();
} finally {
IOUtils.closeQuietly(outStream);
try {
client.disconnect();
} catch (IOException e) {
log.error("Problem disconnecting from FTP server", e);
}
}
return outputRecord;
}
| false |
672 | 2,381,662 | 646,432 | @Test(expected = GadgetException.class)
public void malformedGadgetSpecThrows() throws Exception {
HttpRequest request = createIgnoreCacheRequest();
expect(pipeline.execute(request)).andReturn(new HttpResponse("malformed junk"));
replay(pipeline);
specFactory.getGadgetSpec(createContext(SPEC_URL, true));
}
| public Configuration(URL url) {
InputStream in = null;
try {
load(in = url.openStream());
} catch (Exception e) {
throw new RuntimeException("Could not load configuration from " + url, e);
} finally {
if (in != null) {
try {
in.close();
} catch (IOException ignore) {
}
}
}
}
| false |
673 | 20,612,707 | 7,067,729 | public Vector decode(final URL url) throws IOException {
LineNumberReader reader;
if (owner != null) {
reader = new LineNumberReader(new InputStreamReader(new ProgressMonitorInputStream(owner, "Loading " + url, url.openStream())));
} else {
reader = new LineNumberReader(new InputStreamReader(url.openStream()));
}
Vector v = new Vector();
String line;
Vector events;
try {
while ((line = reader.readLine()) != null) {
StringBuffer buffer = new StringBuffer(line);
for (int i = 0; i < 1000; i++) {
buffer.append(reader.readLine()).append("\n");
}
events = decodeEvents(buffer.toString());
if (events != null) {
v.addAll(events);
}
}
} finally {
partialEvent = null;
try {
if (reader != null) {
reader.close();
}
} catch (Exception e) {
e.printStackTrace();
}
}
return v;
}
| public void loadScripts() {
org.apache.batik.script.Window window = null;
NodeList scripts = document.getElementsByTagNameNS(SVGConstants.SVG_NAMESPACE_URI, SVGConstants.SVG_SCRIPT_TAG);
int len = scripts.getLength();
if (len == 0) {
return;
}
for (int i = 0; i < len; i++) {
Element script = (Element) scripts.item(i);
String type = script.getAttributeNS(null, SVGConstants.SVG_TYPE_ATTRIBUTE);
if (type.length() == 0) {
type = SVGConstants.SVG_SCRIPT_TYPE_DEFAULT_VALUE;
}
if (type.equals(SVGConstants.SVG_SCRIPT_TYPE_JAVA)) {
try {
String href = XLinkSupport.getXLinkHref(script);
ParsedURL purl = new ParsedURL(XMLBaseSupport.getCascadedXMLBase(script), href);
checkCompatibleScriptURL(type, purl);
DocumentJarClassLoader cll;
URL docURL = null;
try {
docURL = new URL(docPURL.toString());
} catch (MalformedURLException mue) {
}
cll = new DocumentJarClassLoader(new URL(purl.toString()), docURL);
URL url = cll.findResource("META-INF/MANIFEST.MF");
if (url == null) {
continue;
}
Manifest man = new Manifest(url.openStream());
String sh;
sh = man.getMainAttributes().getValue("Script-Handler");
if (sh != null) {
ScriptHandler h;
h = (ScriptHandler) cll.loadClass(sh).newInstance();
if (window == null) {
window = createWindow();
}
h.run(document, window);
}
sh = man.getMainAttributes().getValue("SVG-Handler-Class");
if (sh != null) {
EventListenerInitializer initializer;
initializer = (EventListenerInitializer) cll.loadClass(sh).newInstance();
if (window == null) {
window = createWindow();
}
initializer.initializeEventListeners((SVGDocument) document);
}
} catch (Exception e) {
if (userAgent != null) {
userAgent.displayError(e);
}
}
continue;
}
Interpreter interpreter = getInterpreter(type);
if (interpreter == null) continue;
try {
String href = XLinkSupport.getXLinkHref(script);
String desc = null;
Reader reader;
if (href.length() > 0) {
desc = href;
ParsedURL purl = new ParsedURL(XMLBaseSupport.getCascadedXMLBase(script), href);
checkCompatibleScriptURL(type, purl);
reader = new InputStreamReader(purl.openStream());
} else {
checkCompatibleScriptURL(type, docPURL);
DocumentLoader dl = bridgeContext.getDocumentLoader();
Element e = script;
SVGDocument d = (SVGDocument) e.getOwnerDocument();
int line = dl.getLineNumber(script);
desc = Messages.formatMessage(INLINE_SCRIPT_DESCRIPTION, new Object[] { d.getURL(), "<" + script.getNodeName() + ">", new Integer(line) });
Node n = script.getFirstChild();
if (n != null) {
StringBuffer sb = new StringBuffer();
while (n != null) {
if (n.getNodeType() == Node.CDATA_SECTION_NODE || n.getNodeType() == Node.TEXT_NODE) sb.append(n.getNodeValue());
n = n.getNextSibling();
}
reader = new StringReader(sb.toString());
} else {
continue;
}
}
interpreter.evaluate(reader, desc);
} catch (IOException e) {
if (userAgent != null) {
userAgent.displayError(e);
}
return;
} catch (InterpreterException e) {
System.err.println("InterpExcept: " + e);
handleInterpreterException(e);
return;
} catch (SecurityException e) {
if (userAgent != null) {
userAgent.displayError(e);
}
}
}
}
| false |
674 | 11,723,383 | 17,415,423 | private void getImage(String filename) throws MalformedURLException, IOException, SAXException, FileNotFoundException {
String url = Constants.STRATEGICDOMINATION_URL + "/images/gameimages/" + filename;
WebRequest req = new GetMethodWebRequest(url);
SiteResponse response = getSiteResponse(req);
File file = new File("etc/images/" + filename);
FileOutputStream outputStream = new FileOutputStream(file);
IOUtils.copy(response.getInputStream(), outputStream);
}
| public void overwriteFileTest() throws Exception {
File filefrom = new File("/tmp/from.txt");
File fileto = new File("/tmp/to.txt");
InputStream from = null;
OutputStream to = null;
try {
from = new FileInputStream(filefrom);
to = new FileOutputStream(fileto);
byte[] buffer = new byte[4096];
int bytes_read;
while ((bytes_read = from.read(buffer)) != -1) {
to.write(buffer, 0, bytes_read);
}
} finally {
if (from != null) {
from.close();
}
if (to != null) {
to.close();
}
}
}
| true |
675 | 358,893 | 73,657 | public static void doVersionCheck(View view) {
view.showWaitCursor();
try {
URL url = new URL(jEdit.getProperty("version-check.url"));
InputStream in = url.openStream();
BufferedReader bin = new BufferedReader(new InputStreamReader(in));
String line;
String develBuild = null;
String stableBuild = null;
while ((line = bin.readLine()) != null) {
if (line.startsWith(".build")) develBuild = line.substring(6).trim(); else if (line.startsWith(".stablebuild")) stableBuild = line.substring(12).trim();
}
bin.close();
if (develBuild != null && stableBuild != null) {
doVersionCheck(view, stableBuild, develBuild);
}
} catch (IOException e) {
String[] args = { jEdit.getProperty("version-check.url"), e.toString() };
GUIUtilities.error(view, "read-error", args);
}
view.hideWaitCursor();
}
| public static void test(String args[]) {
int trace;
int bytes_read = 0;
int last_contentLenght = 0;
try {
BufferedReader reader;
URL url;
url = new URL(args[0]);
URLConnection istream = url.openConnection();
last_contentLenght = istream.getContentLength();
reader = new BufferedReader(new InputStreamReader(istream.getInputStream()));
System.out.println(url.toString());
String line;
trace = t2pNewTrace();
while ((line = reader.readLine()) != null) {
bytes_read = bytes_read + line.length() + 1;
t2pProcessLine(trace, line);
}
t2pHandleEventPairs(trace);
t2pSort(trace, 0);
t2pExportTrace(trace, new String("pngtest2.png"), 1000, 700, (float) 0, (float) 33);
t2pExportTrace(trace, new String("pngtest3.png"), 1000, 700, (float) 2.3, (float) 2.44);
System.out.println("Press any key to contiune read from stream !!!");
System.out.println(t2pGetProcessName(trace, 0));
System.in.read();
istream = url.openConnection();
if (last_contentLenght != istream.getContentLength()) {
istream = url.openConnection();
istream.setRequestProperty("Range", "bytes=" + Integer.toString(bytes_read) + "-");
System.out.println(Integer.toString(istream.getContentLength()));
reader = new BufferedReader(new InputStreamReader(istream.getInputStream()));
while ((line = reader.readLine()) != null) {
System.out.println(line);
t2pProcessLine(trace, line);
}
} else System.out.println("File not changed !");
t2pDeleteTrace(trace);
} catch (MalformedURLException e) {
System.out.println("MalformedURLException !!!");
} catch (IOException e) {
System.out.println("File not found " + args[0]);
}
;
}
| true |
676 | 3,008,655 | 16,351,775 | public static void copyFile(File srcFile, File desFile) throws IOException {
AssertUtility.notNull(srcFile);
AssertUtility.notNull(desFile);
FileInputStream fis = new FileInputStream(srcFile);
FileOutputStream fos = new FileOutputStream(desFile);
try {
FileChannel srcChannel = fis.getChannel();
FileChannel dstChannel = fos.getChannel();
dstChannel.transferFrom(srcChannel, 0, srcChannel.size());
srcChannel.close();
dstChannel.close();
} finally {
fis.close();
fos.close();
}
}
| public static boolean encodeFileToFile(String infile, String outfile) {
boolean success = false;
java.io.InputStream in = null;
java.io.OutputStream out = null;
try {
in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE);
out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile));
byte[] buffer = new byte[65536];
int read = -1;
while ((read = in.read(buffer)) >= 0) {
out.write(buffer, 0, read);
}
success = true;
} catch (java.io.IOException exc) {
exc.printStackTrace();
} finally {
try {
in.close();
} catch (Exception exc) {
}
try {
out.close();
} catch (Exception exc) {
}
}
return success;
}
| true |
677 | 10,692,452 | 13,771,944 | public boolean config(URL url, boolean throwsException) throws IllegalArgumentException {
try {
final MetaRoot conf = UjoManagerXML.getInstance().parseXML(new BufferedInputStream(url.openStream()), MetaRoot.class, this);
config(conf);
return true;
} catch (Exception e) {
if (throwsException) {
throw new IllegalArgumentException("Configuration file is not valid ", e);
} else {
return false;
}
}
}
| public static String generate(String username, String password) throws PersistenceException {
String output = null;
try {
MessageDigest md = MessageDigest.getInstance("SHA-256");
md.reset();
md.update(username.getBytes());
md.update(password.getBytes());
byte[] rawhash = md.digest();
output = byteToBase64(rawhash);
} catch (Exception e) {
throw new PersistenceException("error, could not generate password");
}
return output;
}
| false |
678 | 1,624,010 | 20,164,979 | public static void copy(String a, String b) throws IOException {
File inputFile = new File(a);
File outputFile = new File(b);
FileReader in = new FileReader(inputFile);
FileWriter out = new FileWriter(outputFile);
int c;
while ((c = in.read()) != -1) out.write(c);
in.close();
out.close();
}
| private void handleUpload(CommonsMultipartFile file, String newFileName, String uploadDir) throws IOException, FileNotFoundException {
File dirPath = new File(uploadDir);
if (!dirPath.exists()) {
dirPath.mkdirs();
}
InputStream stream = file.getInputStream();
OutputStream bos = new FileOutputStream(uploadDir + newFileName);
IOUtils.copy(stream, bos);
}
| true |
679 | 2,994,948 | 5,198,622 | public JSONObject getTargetGraph(HttpSession session, JSONObject json) throws JSONException {
StringBuffer out = new StringBuffer();
Graph tgt = null;
MappingManager manager = (MappingManager) session.getAttribute(RuncibleConstants.MAPPING_MANAGER.key());
try {
tgt = manager.getTargetGraph();
if (tgt != null) {
FlexGraphViewFactory factory = new FlexGraphViewFactory();
factory.setColorScheme(ColorSchemes.ORANGES);
factory.visit(tgt);
GraphView view = factory.getGraphView();
GraphViewRenderer renderer = new FlexGraphViewRenderer();
renderer.setGraphView(view);
InputStream xmlStream = renderer.renderGraphView();
StringWriter writer = new StringWriter();
IOUtils.copy(xmlStream, writer);
writer.close();
System.out.println(writer.toString());
out.append(writer.toString());
} else {
out.append("No target graph loaded.");
}
} catch (Exception e) {
return JSONUtils.SimpleJSONError("Cannot load target graph: " + e.getMessage());
}
return JSONUtils.SimpleJSONResponse(out.toString());
}
| public byte[] getFile(final String file) throws IOException {
if (this.files.contains(file)) {
ZipInputStream input = new ZipInputStream(new ByteArrayInputStream(this.bytes));
ZipEntry entry = input.getNextEntry();
while (entry != null) {
entry = input.getNextEntry();
if ((entry.getName().equals(file)) && (!entry.isDirectory())) {
ByteArrayOutputStream output = new ByteArrayOutputStream();
IOUtils.copy(input, output);
output.close();
input.close();
return output.toByteArray();
}
}
input.close();
}
return null;
}
| true |
680 | 8,162,671 | 16,593,572 | public static String getMD5Hash(String hashthis) throws NoSuchAlgorithmException {
byte[] key = "PATIENTISAUTHENTICATION".getBytes();
MessageDigest md5 = MessageDigest.getInstance("MD5");
md5.update(hashthis.getBytes());
return new String(HashUtility.base64Encode(md5.digest(key)));
}
| public HttpResponse execute(final HttpRequest request, final HttpClientConnection conn, final HttpContext context) throws IOException, HttpException {
if (request == null) {
throw new IllegalArgumentException("HTTP request may not be null");
}
if (conn == null) {
throw new IllegalArgumentException("Client connection may not be null");
}
if (context == null) {
throw new IllegalArgumentException("HTTP context may not be null");
}
try {
HttpResponse response = doSendRequest(request, conn, context);
if (response == null) {
response = doReceiveResponse(request, conn, context);
}
return response;
} catch (IOException ex) {
conn.close();
throw ex;
} catch (HttpException ex) {
conn.close();
throw ex;
} catch (RuntimeException ex) {
conn.close();
throw ex;
}
}
| false |
681 | 744,014 | 523,070 | static void copy(String src, String dest) throws IOException {
File ifp = new File(src);
File ofp = new File(dest);
if (ifp.exists() == false) {
throw new IOException("file '" + src + "' does not exist");
}
FileInputStream fis = new FileInputStream(ifp);
FileOutputStream fos = new FileOutputStream(ofp);
byte[] b = new byte[1024];
while (fis.read(b) > 0) fos.write(b);
fis.close();
fos.close();
}
| public void convert(File src, File dest) throws IOException {
InputStream in = new BufferedInputStream(new FileInputStream(src));
DcmParser p = pfact.newDcmParser(in);
Dataset ds = fact.newDataset();
p.setDcmHandler(ds.getDcmHandler());
try {
FileFormat format = p.detectFileFormat();
if (format != FileFormat.ACRNEMA_STREAM) {
System.out.println("\n" + src + ": not an ACRNEMA stream!");
return;
}
p.parseDcmFile(format, Tags.PixelData);
if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) {
System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert");
return;
}
boolean hasPixelData = p.getReadTag() == Tags.PixelData;
boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12;
int pxlen = p.getReadLength();
if (hasPixelData) {
if (inflate) {
ds.putUS(Tags.BitsAllocated, 16);
pxlen = pxlen * 4 / 3;
}
if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) {
System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert");
return;
}
}
ds.putUI(Tags.StudyInstanceUID, uid(studyUID));
ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID));
ds.putUI(Tags.SOPInstanceUID, uid(instUID));
ds.putUI(Tags.SOPClassUID, classUID);
if (!ds.contains(Tags.NumberOfSamples)) {
ds.putUS(Tags.NumberOfSamples, 1);
}
if (!ds.contains(Tags.PhotometricInterpretation)) {
ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2");
}
if (fmi) {
ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian));
}
OutputStream out = new BufferedOutputStream(new FileOutputStream(dest));
try {
} finally {
ds.writeFile(out, encodeParam());
if (hasPixelData) {
if (!skipGroupLen) {
out.write(PXDATA_GROUPLEN);
int grlen = pxlen + 8;
out.write((byte) grlen);
out.write((byte) (grlen >> 8));
out.write((byte) (grlen >> 16));
out.write((byte) (grlen >> 24));
}
out.write(PXDATA_TAG);
out.write((byte) pxlen);
out.write((byte) (pxlen >> 8));
out.write((byte) (pxlen >> 16));
out.write((byte) (pxlen >> 24));
}
if (inflate) {
int b2, b3;
for (; pxlen > 0; pxlen -= 3) {
out.write(in.read());
b2 = in.read();
b3 = in.read();
out.write(b2 & 0x0f);
out.write(b2 >> 4 | ((b3 & 0x0f) << 4));
out.write(b3 >> 4);
}
} else {
for (; pxlen > 0; --pxlen) {
out.write(in.read());
}
}
out.close();
}
System.out.print('.');
} finally {
in.close();
}
}
| true |
682 | 3,330,945 | 2,324,866 | public void extractImage(String input, OutputStream os, DjatokaDecodeParam params, IWriter w) throws DjatokaException {
File in = null;
if (input.equals(STDIN)) {
try {
in = File.createTempFile("tmp", ".jp2");
input = in.getAbsolutePath();
in.deleteOnExit();
IOUtils.copyFile(new File(STDIN), in);
} catch (IOException e) {
logger.error("Unable to process image from " + STDIN + ": " + e.getMessage());
throw new DjatokaException(e);
}
}
BufferedImage bi = extractImpl.process(input, params);
if (bi != null) {
if (params.getScalingFactor() != 1.0 || params.getScalingDimensions() != null) bi = applyScaling(bi, params);
if (params.getTransform() != null) bi = params.getTransform().run(bi);
w.write(bi, os);
}
if (in != null) in.delete();
}
| public SpreadSheetFrame(FileManager owner, File file, Delimiter delim) {
super(owner, file.getPath());
JPanel pane = new JPanel(new BorderLayout());
super.contentPane.add(pane);
this.tableModel = new BigTableModel(file, delim);
this.table = new JTable(tableModel);
this.table.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
this.tableModel.setTable(this.table);
pane.add(new JScrollPane(this.table));
addInternalFrameListener(new InternalFrameAdapter() {
@Override
public void internalFrameClosed(InternalFrameEvent e) {
tableModel.close();
}
});
JMenu menu = new JMenu("Tools");
getJMenuBar().add(menu);
menu.add(new AbstractAction("NCBI") {
@Override
public void actionPerformed(ActionEvent e) {
try {
Pattern delim = Pattern.compile("[ ]");
BufferedReader r = new BufferedReader(new InputStreamReader(new GZIPInputStream(new FileInputStream("/home/lindenb/jeter.txt.gz"))));
String line = null;
URL url = new URL("http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi");
URLConnection conn = url.openConnection();
conn.setDoOutput(true);
OutputStreamWriter wr = new OutputStreamWriter(conn.getOutputStream());
wr.write("db=snp&retmode=xml");
while ((line = r.readLine()) != null) {
String tokens[] = delim.split(line, 2);
if (!tokens[0].startsWith("rs")) continue;
wr.write("&id=" + tokens[0].substring(2).trim());
}
wr.flush();
r.close();
InputStream in = conn.getInputStream();
IOUtils.copyTo(in, System.err);
in.close();
wr.close();
} catch (IOException err) {
err.printStackTrace();
}
}
});
}
| true |
683 | 16,658,637 | 12,465,375 | private void initUserExtensions(SeleniumConfiguration seleniumConfiguration) throws IOException {
StringBuilder contents = new StringBuilder();
StringOutputStream s = new StringOutputStream();
IOUtils.copy(SeleniumConfiguration.class.getResourceAsStream("default-user-extensions.js"), s);
contents.append(s.toString());
File providedUserExtensions = seleniumConfiguration.getFile(ConfigurationPropertyKeys.SELENIUM_USER_EXTENSIONS, seleniumConfiguration.getDirectoryConfiguration().getInput(), false);
if (providedUserExtensions != null) {
contents.append(FileUtils.readFileToString(providedUserExtensions, null));
}
seleniumUserExtensions = new File(seleniumConfiguration.getDirectoryConfiguration().getInput(), "user-extensions.js");
FileUtils.forceMkdir(seleniumUserExtensions.getParentFile());
FileUtils.writeStringToFile(seleniumUserExtensions, contents.toString(), null);
}
| private void write(File src, File dst, byte id3v1Tag[], byte id3v2HeadTag[], byte id3v2TailTag[]) throws IOException {
if (src == null || !src.exists()) throw new IOException(Debug.getDebug("missing src", src));
if (!src.getName().toLowerCase().endsWith(".mp3")) throw new IOException(Debug.getDebug("src not mp3", src));
if (dst == null) throw new IOException(Debug.getDebug("missing dst", dst));
if (dst.exists()) {
dst.delete();
if (dst.exists()) throw new IOException(Debug.getDebug("could not delete dst", dst));
}
boolean hasId3v1 = new MyID3v1().hasID3v1(src);
long id3v1Length = hasId3v1 ? ID3_V1_TAG_LENGTH : 0;
long id3v2HeadLength = new MyID3v2().findID3v2HeadLength(src);
long id3v2TailLength = new MyID3v2().findID3v2TailLength(src, hasId3v1);
OutputStream os = null;
InputStream is = null;
try {
dst.getParentFile().mkdirs();
os = new FileOutputStream(dst);
os = new BufferedOutputStream(os);
if (!skipId3v2Head && !skipId3v2 && id3v2HeadTag != null) os.write(id3v2HeadTag);
is = new FileInputStream(src);
is = new BufferedInputStream(is);
is.skip(id3v2HeadLength);
long total_to_read = src.length();
total_to_read -= id3v1Length;
total_to_read -= id3v2HeadLength;
total_to_read -= id3v2TailLength;
byte buffer[] = new byte[1024];
long total_read = 0;
while (total_read < total_to_read) {
int remainder = (int) (total_to_read - total_read);
int readSize = Math.min(buffer.length, remainder);
int read = is.read(buffer, 0, readSize);
if (read <= 0) throw new IOException("unexpected EOF");
os.write(buffer, 0, read);
total_read += read;
}
if (!skipId3v2Tail && !skipId3v2 && id3v2TailTag != null) os.write(id3v2TailTag);
if (!skipId3v1 && id3v1Tag != null) os.write(id3v1Tag);
} finally {
try {
if (is != null) is.close();
} catch (Throwable e) {
Debug.debug(e);
}
try {
if (os != null) os.close();
} catch (Throwable e) {
Debug.debug(e);
}
}
}
| true |
684 | 21,511,914 | 19,332,852 | public static synchronized String getPageContent(String pageUrl) {
URL url = null;
InputStreamReader inputStreamReader = null;
BufferedReader bufferedReader = null;
String line = null;
StringBuilder page = null;
if (pageUrl == null || pageUrl.trim().length() == 0) {
return null;
} else {
try {
url = new URL(pageUrl);
inputStreamReader = new InputStreamReader(url.openStream());
bufferedReader = new BufferedReader(inputStreamReader);
page = new StringBuilder();
while ((line = bufferedReader.readLine()) != null) {
page.append(line);
page.append("\n");
}
} catch (IOException e) {
logger.error("IOException", e);
} catch (Exception e) {
logger.error("Exception", e);
} finally {
try {
if (bufferedReader != null) {
bufferedReader.close();
}
if (inputStreamReader != null) {
inputStreamReader.close();
}
} catch (IOException e) {
logger.error("IOException", e);
} catch (Exception e) {
logger.error("Exception", e);
}
}
}
if (page == null) {
return null;
} else {
return page.toString();
}
}
| public void access() {
Authenticator.setDefault(new MyAuthenticator());
try {
URL url = new URL("http://localhost/ws/test");
BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream()));
String str;
while ((str = in.readLine()) != null) {
}
in.close();
} catch (MalformedURLException e) {
} catch (IOException e) {
}
}
| true |
685 | 18,741,084 | 14,188,181 | public static void copyFile(File sourceFile, File destFile) throws IOException {
if (!destFile.exists()) {
destFile.createNewFile();
}
FileChannel source = null;
FileChannel destination = null;
try {
source = new FileInputStream(sourceFile).getChannel();
destination = new FileOutputStream(destFile).getChannel();
destination.transferFrom(source, 0, source.size());
} finally {
if (source != null) {
source.close();
}
if (destination != null) {
destination.close();
}
}
}
| protected void copyFile(String from, String to, String workingDirectory) throws Exception {
URL monitorCallShellScriptUrl = Thread.currentThread().getContextClassLoader().getResource(from);
File f = new File(monitorCallShellScriptUrl.getFile());
String directoryPath = f.getAbsolutePath();
String fileName = from;
InputStream in = null;
if (directoryPath.indexOf(".jar!") > -1) {
URL urlJar = new URL(directoryPath.substring(directoryPath.indexOf("file:"), directoryPath.indexOf('!')));
JarFile jf = new JarFile(urlJar.getFile());
JarEntry je = jf.getJarEntry(from);
fileName = je.getName();
in = Thread.currentThread().getContextClassLoader().getResourceAsStream(fileName);
} else {
in = new FileInputStream(f);
}
File outScriptFile = new File(to);
FileOutputStream fos = new FileOutputStream(outScriptFile);
int nextChar;
while ((nextChar = in.read()) != -1) fos.write(nextChar);
fos.flush();
fos.close();
try {
LinuxCommandExecutor cmdExecutor = new LinuxCommandExecutor();
cmdExecutor.setWorkingDirectory(workingDirectory);
cmdExecutor.runCommand("chmod 777 " + to);
} catch (Exception e) {
throw e;
}
}
| true |
686 | 22,991,277 | 4,557,988 | public static final String encryptSHA(String decrypted) {
try {
MessageDigest sha = MessageDigest.getInstance("SHA-1");
sha.reset();
sha.update(decrypted.getBytes());
byte hash[] = sha.digest();
sha.reset();
return hashToHex(hash);
} catch (NoSuchAlgorithmException _ex) {
return null;
}
}
| public Attributes getAttributes() throws SchemaViolationException, NoSuchAlgorithmException, UnsupportedEncodingException {
BasicAttributes outAttrs = new BasicAttributes(true);
BasicAttribute oc = new BasicAttribute("objectclass", "inetOrgPerson");
oc.add("organizationalPerson");
oc.add("person");
outAttrs.put(oc);
if (lastName != null && firstName != null) {
outAttrs.put("sn", lastName);
outAttrs.put("givenName", firstName);
outAttrs.put("cn", firstName + " " + lastName);
} else {
throw new SchemaViolationException("user must have surname");
}
if (password != null) {
MessageDigest sha = MessageDigest.getInstance("md5");
sha.reset();
sha.update(password.getBytes("utf-8"));
byte[] digest = sha.digest();
String hash = Base64.encodeBase64String(digest);
outAttrs.put("userPassword", "{MD5}" + hash);
}
if (email != null) {
outAttrs.put("mail", email);
}
return (Attributes) outAttrs;
}
| true |
687 | 1,508,163 | 16,116,703 | public boolean sendMail(MailObject mail, boolean backup) throws NetworkException, ContentException {
HttpClient client = HttpConfig.newInstance();
HttpPost post = new HttpPost(HttpConfig.bbsURL() + HttpConfig.BBS_MAIL_SEND);
List<NameValuePair> nvps = new ArrayList<NameValuePair>();
nvps.add(new BasicNameValuePair(HttpConfig.BBS_MAIL_SEND_REF_PARAM_NAME, "pstmail"));
nvps.add(new BasicNameValuePair(HttpConfig.BBS_MAIL_SEND_RECV_PARAM_NAME, mail.getSender()));
nvps.add(new BasicNameValuePair(HttpConfig.BBS_MAIL_SEND_TITLE_PARAM_NAME, mail.getTitle()));
nvps.add(new BasicNameValuePair(HttpConfig.BBS_MAIL_SEND_CONTENT_PARAM_NAME, mail.getContent()));
if (backup) nvps.add(new BasicNameValuePair(HttpConfig.BBS_MAIL_SEND_BACKUP_PARAM_NAME, "backup"));
try {
post.setEntity(new UrlEncodedFormEntity(nvps, BBSBodyParseHelper.BBS_CHARSET));
HttpResponse response = client.execute(post);
HttpEntity entity = response.getEntity();
if (HTTPUtil.isHttp200(response)) {
HTTPUtil.consume(response.getEntity());
return true;
} else {
String msg = BBSBodyParseHelper.parseFailMsg(entity);
throw new ContentException(msg);
}
} catch (ClientProtocolException e) {
e.printStackTrace();
throw new NetworkException(e);
} catch (IOException e) {
e.printStackTrace();
throw new NetworkException(e);
}
}
| private void save() {
int[] selection = list.getSelectionIndices();
String dir = System.getProperty("user.dir");
for (int i = 0; i < selection.length; i++) {
File src = files[selection[i]];
FileDialog dialog = new FileDialog(shell, SWT.SAVE);
dialog.setFilterPath(dir);
dialog.setFileName(src.getName());
String destination = dialog.open();
if (destination != null) {
File dest = new File(destination);
try {
dest.createNewFile();
FileChannel srcC = new FileInputStream(src).getChannel();
FileChannel destC = new FileOutputStream(dest).getChannel();
destC.transferFrom(srcC, 0, srcC.size());
destC.close();
srcC.close();
updateSaved(selection[i], true);
files[selection[i]] = dest;
} catch (FileNotFoundException e) {
IVC.showError("Error!", "" + e.getMessage(), "");
} catch (IOException e) {
IVC.showError("Error!", "" + e.getMessage(), "");
}
}
}
}
| false |
688 | 6,908,734 | 7,839,811 | public <E extends Exception> void doWithConnection(String httpAddress, ICallableWithParameter<Void, URLConnection, E> toDo) throws E, ConnectionException {
URLConnection connection;
try {
URL url = new URL(httpAddress);
connection = url.openConnection();
} catch (MalformedURLException e) {
throw new ConnectionException("Connecting to " + httpAddress + " got", e);
} catch (IOException e) {
throw new ConnectionException("Connecting to " + httpAddress + " got", e);
}
authenticationHandler.doWithProxyAuthentication(connection, toDo);
}
| public static String md5(String input) {
byte[] temp;
try {
MessageDigest messageDigest;
messageDigest = MessageDigest.getInstance("MD5");
messageDigest.update(input.getBytes());
temp = messageDigest.digest();
} catch (Exception e) {
return null;
}
return MyUtils.byte2HexStr(temp);
}
| false |
689 | 9,261,775 | 16,532,304 | public static void unzipAndRemove(final String file) {
String destination = file.substring(0, file.length() - 3);
InputStream is = null;
OutputStream os = null;
try {
is = new GZIPInputStream(new FileInputStream(file));
os = new FileOutputStream(destination);
byte[] buffer = new byte[8192];
for (int length; (length = is.read(buffer)) != -1; ) os.write(buffer, 0, length);
} catch (IOException e) {
System.err.println("Fehler: Kann nicht entpacken " + file);
} finally {
if (os != null) try {
os.close();
} catch (IOException e) {
}
if (is != null) try {
is.close();
} catch (IOException e) {
}
}
deleteFile(file);
}
| private void putAlgosFromJar(File jarfile, AlgoDir dir, Model model) throws FileNotFoundException, IOException {
URLClassLoader urlLoader = new URLClassLoader(new URL[] { jarfile.toURI().toURL() });
JarInputStream jis = new JarInputStream(new FileInputStream(jarfile));
JarEntry entry = jis.getNextJarEntry();
String name = null;
String tmpdir = System.getProperty("user.dir") + File.separator + Application.getProperty("dir.tmp") + File.separator;
byte[] buffer = new byte[1000];
while (entry != null) {
name = entry.getName();
if (name.endsWith(".class")) {
name = name.substring(0, name.length() - 6);
name = name.replace('/', '.');
try {
Class<?> cls = urlLoader.loadClass(name);
if (IAlgorithm.class.isAssignableFrom(cls) && !cls.isInterface() && ((cls.getModifiers() & Modifier.ABSTRACT) == 0)) {
dir.addAlgorithm(cls);
model.putClass(cls.getName(), cls);
} else if (ISerializable.class.isAssignableFrom(cls)) {
model.putClass(cls.getName(), cls);
}
} catch (ClassNotFoundException e) {
e.printStackTrace();
}
} else if (Constants.isAllowedImageType(name)) {
int lastSep = name.lastIndexOf("/");
if (lastSep != -1) {
String dirs = tmpdir + name.substring(0, lastSep);
File d = new File(dirs);
if (!d.exists()) d.mkdirs();
}
String filename = tmpdir + name;
File f = new File(filename);
if (!f.exists()) {
f.createNewFile();
FileOutputStream fos = new FileOutputStream(f);
int read = -1;
while ((read = jis.read(buffer)) != -1) {
fos.write(buffer, 0, read);
}
fos.close();
}
}
entry = jis.getNextJarEntry();
}
}
| true |
690 | 6,043,997 | 2,090,333 | protected String md5sum(String toCompute) throws Exception {
MessageDigest md = MessageDigest.getInstance("MD5");
md.update(toCompute.getBytes());
java.math.BigInteger hash = new java.math.BigInteger(1, md.digest());
return hash.toString(16);
}
| private static byte[] tryLoadFile(String path) throws IOException {
InputStream in = new FileInputStream(path);
ByteArrayOutputStream out = new ByteArrayOutputStream();
IOUtils.copy(in, out);
in.close();
out.close();
return out.toByteArray();
}
| false |
691 | 22,135,201 | 7,219,016 | public void testCodingFromFileSmaller() throws Exception {
ByteArrayOutputStream baos = new ByteArrayOutputStream();
WritableByteChannel channel = newChannel(baos);
HttpParams params = new BasicHttpParams();
SessionOutputBuffer outbuf = new SessionOutputBufferImpl(1024, 128, params);
HttpTransportMetricsImpl metrics = new HttpTransportMetricsImpl();
LengthDelimitedEncoder encoder = new LengthDelimitedEncoder(channel, outbuf, metrics, 16);
File tmpFile = File.createTempFile("testFile", "txt");
FileOutputStream fout = new FileOutputStream(tmpFile);
OutputStreamWriter wrtout = new OutputStreamWriter(fout);
wrtout.write("stuff;");
wrtout.write("more stuff;");
wrtout.flush();
wrtout.close();
FileChannel fchannel = new FileInputStream(tmpFile).getChannel();
encoder.transfer(fchannel, 0, 20);
String s = baos.toString("US-ASCII");
assertTrue(encoder.isCompleted());
assertEquals("stuff;more stuff", s);
tmpFile.delete();
}
| public static String getMD5(String... list) {
if (list.length == 0) return null;
MessageDigest md;
try {
md = MessageDigest.getInstance("MD5");
} catch (NoSuchAlgorithmException e) {
throw new RuntimeException(e);
}
md.reset();
for (String in : list) md.update(in.getBytes());
byte[] digest = md.digest();
StringBuilder hexString = new StringBuilder();
for (int i = 0; i < digest.length; ++i) {
String hex = Integer.toHexString(0xFF & digest[i]);
if (hex.length() == 1) hexString.append('0');
hexString.append(hex);
}
return hexString.toString();
}
| false |
692 | 145,197 | 151,885 | public void convert(File src, File dest) throws IOException {
InputStream in = new BufferedInputStream(new FileInputStream(src));
DcmParser p = pfact.newDcmParser(in);
Dataset ds = fact.newDataset();
p.setDcmHandler(ds.getDcmHandler());
try {
FileFormat format = p.detectFileFormat();
if (format != FileFormat.ACRNEMA_STREAM) {
System.out.println("\n" + src + ": not an ACRNEMA stream!");
return;
}
p.parseDcmFile(format, Tags.PixelData);
if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) {
System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert");
return;
}
boolean hasPixelData = p.getReadTag() == Tags.PixelData;
boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12;
int pxlen = p.getReadLength();
if (hasPixelData) {
if (inflate) {
ds.putUS(Tags.BitsAllocated, 16);
pxlen = pxlen * 4 / 3;
}
if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) {
System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert");
return;
}
}
ds.putUI(Tags.StudyInstanceUID, uid(studyUID));
ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID));
ds.putUI(Tags.SOPInstanceUID, uid(instUID));
ds.putUI(Tags.SOPClassUID, classUID);
if (!ds.contains(Tags.NumberOfSamples)) {
ds.putUS(Tags.NumberOfSamples, 1);
}
if (!ds.contains(Tags.PhotometricInterpretation)) {
ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2");
}
if (fmi) {
ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian));
}
OutputStream out = new BufferedOutputStream(new FileOutputStream(dest));
try {
} finally {
ds.writeFile(out, encodeParam());
if (hasPixelData) {
if (!skipGroupLen) {
out.write(PXDATA_GROUPLEN);
int grlen = pxlen + 8;
out.write((byte) grlen);
out.write((byte) (grlen >> 8));
out.write((byte) (grlen >> 16));
out.write((byte) (grlen >> 24));
}
out.write(PXDATA_TAG);
out.write((byte) pxlen);
out.write((byte) (pxlen >> 8));
out.write((byte) (pxlen >> 16));
out.write((byte) (pxlen >> 24));
}
if (inflate) {
int b2, b3;
for (; pxlen > 0; pxlen -= 3) {
out.write(in.read());
b2 = in.read();
b3 = in.read();
out.write(b2 & 0x0f);
out.write(b2 >> 4 | ((b3 & 0x0f) << 4));
out.write(b3 >> 4);
}
} else {
for (; pxlen > 0; --pxlen) {
out.write(in.read());
}
}
out.close();
}
System.out.print('.');
} finally {
in.close();
}
}
| private static void main(String[] args) {
try {
File f = new File("test.txt");
if (f.exists()) {
throw new IOException(f + " already exists. I don't want to overwrite it.");
}
StraightStreamReader in;
char[] cbuf = new char[0x1000];
int read;
int totRead;
FileOutputStream out = new FileOutputStream(f);
for (int i = 0x00; i < 0x100; i++) {
out.write(i);
}
out.close();
in = new StraightStreamReader(new FileInputStream(f));
for (int i = 0x00; i < 0x100; i++) {
read = in.read();
if (read != i) {
System.err.println("Error: " + i + " read as " + read);
}
}
in.close();
in = new StraightStreamReader(new FileInputStream(f));
totRead = in.read(cbuf);
if (totRead != 0x100) {
System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead));
}
for (int i = 0x00; i < totRead; i++) {
if (cbuf[i] != i) {
System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]);
}
}
in.close();
in = new StraightStreamReader(new FileInputStream(f));
totRead = 0;
while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) {
totRead += read;
}
if (totRead != 0x100) {
System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead));
}
for (int i = 0x00; i < totRead; i++) {
if (cbuf[i] != i) {
System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]);
}
}
in.close();
in = new StraightStreamReader(new FileInputStream(f));
totRead = 0;
while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) {
totRead += read;
}
if (totRead != 0x100) {
System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead));
}
for (int i = 0x00; i < totRead; i++) {
if (cbuf[i + 0x123] != i) {
System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]);
}
}
in.close();
in = new StraightStreamReader(new FileInputStream(f));
totRead = 0;
while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) {
totRead += read;
}
if (totRead != 0x100) {
System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead));
}
for (int i = 0x00; i < totRead; i++) {
if (cbuf[i + 0x123] != i) {
System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]);
}
}
in.close();
f.delete();
} catch (IOException x) {
System.err.println(x.getMessage());
}
}
| true |
693 | 21,905,202 | 10,797,166 | private boolean hasPackageInfo(URL url) {
if (url == null) return false;
BufferedReader br = null;
try {
br = new BufferedReader(new InputStreamReader(url.openStream()));
String line;
while ((line = br.readLine()) != null) {
if (line.startsWith("Specification-Title: ") || line.startsWith("Specification-Version: ") || line.startsWith("Specification-Vendor: ") || line.startsWith("Implementation-Title: ") || line.startsWith("Implementation-Version: ") || line.startsWith("Implementation-Vendor: ")) return true;
}
} catch (IOException ioe) {
} finally {
if (br != null) try {
br.close();
} catch (IOException e) {
}
}
return false;
}
| public static String readFromUrl(String url) {
URL url_ = null;
URLConnection uc = null;
BufferedReader in = null;
StringBuilder str = new StringBuilder();
try {
url_ = new URL(url);
uc = url_.openConnection();
in = new BufferedReader(new InputStreamReader(uc.getInputStream()));
String inputLine;
while ((inputLine = in.readLine()) != null) str.append(inputLine);
in.close();
} catch (IOException e) {
e.printStackTrace();
}
return str.toString();
}
| false |
694 | 13,660,039 | 22,321,272 | public static void main(String[] args) throws Exception {
if (args.length != 2) {
PrintUtil.prt("arguments: sourcefile, destfile");
System.exit(1);
}
FileChannel in = new FileInputStream(args[0]).getChannel(), out = new FileOutputStream(args[1]).getChannel();
in.transferTo(0, in.size(), out);
}
| public static void copyFile(File from, File to) throws Exception {
if (!from.exists()) return;
FileInputStream in = new FileInputStream(from);
FileOutputStream out = new FileOutputStream(to);
byte[] buffer = new byte[BUFFER_SIZE];
int bytes_read;
while (true) {
bytes_read = in.read(buffer);
if (bytes_read == -1) break;
out.write(buffer, 0, bytes_read);
}
out.flush();
out.close();
in.close();
}
| true |
695 | 22,832,422 | 8,181,035 | private void backupOriginalFile(String myFile) {
Date date = new Date();
SimpleDateFormat format = new SimpleDateFormat("yyyy-MM-dd_S");
String datePortion = format.format(date);
try {
FileInputStream fis = new FileInputStream(myFile);
FileOutputStream fos = new FileOutputStream(myFile + "-" + datePortion + "_UserID" + ".html");
FileChannel fcin = fis.getChannel();
FileChannel fcout = fos.getChannel();
fcin.transferTo(0, fcin.size(), fcout);
fcin.close();
fcout.close();
fis.close();
fos.close();
System.out.println("**** Backup of file made.");
} catch (Exception e) {
System.out.println(e);
}
}
| private String getData(String method, String arg) {
try {
URL url;
String str;
StringBuilder strBuilder;
BufferedReader stream;
url = new URL(API_BASE_URL + "/2.1/" + method + "/en/xml/" + API_KEY + "/" + URLEncoder.encode(arg, "UTF-8"));
stream = new BufferedReader(new InputStreamReader(url.openStream()));
strBuilder = new StringBuilder();
while ((str = stream.readLine()) != null) {
strBuilder.append(str);
}
stream.close();
return strBuilder.toString();
} catch (MalformedURLException e) {
return null;
} catch (IOException e) {
return null;
}
}
| false |
696 | 249,612 | 14,193,058 | protected static boolean checkVersion(String address) {
Scanner scanner = null;
try {
URL url = new URL(address);
InputStream iS = url.openStream();
scanner = new Scanner(iS);
if (scanner == null && DEBUG) System.out.println("SCANNER NULL");
String firstLine = scanner.nextLine();
double latestVersion = Double.valueOf(firstLine.trim());
double thisVersion = JCards.VERSION;
if (thisVersion >= latestVersion) {
JCards.latestVersion = true;
} else {
displaySimpleAlert(null, JCards.VERSION_PREFIX + latestVersion + " is available online!\n" + "Look under the file menu for a link to the download site.");
}
} catch (Exception e) {
if (VERBOSE || DEBUG) {
System.out.println("Can't decide latest version");
e.printStackTrace();
}
return false;
}
return true;
}
| public static String submitURLRequest(String url) throws HttpException, IOException, URISyntaxException {
HttpClient httpclient = new DefaultHttpClient();
InputStream stream = null;
user_agents = new LinkedList<String>();
user_agents.add("Mozilla/5.0 (Windows; U; Windows NT 6.1; en-US; rv:1.9.2.2) Gecko/20100316 Firefox/3.6.2");
String response_text = "";
URI uri = new URI(url);
HttpGet post = new HttpGet(uri);
int MAX = user_agents.size() - 1;
int index = (int) Math.round(((double) Math.random() * (MAX)));
String agent = user_agents.get(index);
httpclient.getParams().setParameter(CoreProtocolPNames.USER_AGENT, agent);
httpclient.getParams().setParameter("User-Agent", agent);
httpclient.getParams().setParameter(ClientPNames.COOKIE_POLICY, CookiePolicy.ACCEPT_NONE);
HttpResponse response = httpclient.execute(post);
HttpEntity entity = response.getEntity();
if (entity != null) {
stream = entity.getContent();
response_text = convertStreamToString(stream);
}
httpclient.getConnectionManager().shutdown();
if (stream != null) {
stream.close();
}
return response_text;
}
| false |
697 | 4,629,671 | 7,386,971 | public static String hexMD5(String value) {
try {
MessageDigest messageDigest = MessageDigest.getInstance("MD5");
messageDigest.reset();
messageDigest.update(value.getBytes("utf-8"));
byte[] digest = messageDigest.digest();
return byteToHexString(digest);
} catch (Exception ex) {
throw new UnexpectedException(ex);
}
}
| public String hash(String senha) {
String result = "";
try {
MessageDigest md = MessageDigest.getInstance("MD5");
md.update(senha.getBytes());
byte[] hashMd5 = md.digest();
for (int i = 0; i < hashMd5.length; i++) result += Integer.toHexString((((hashMd5[i] >> 4) & 0xf) << 4) | (hashMd5[i] & 0xf));
} catch (NoSuchAlgorithmException ex) {
Logger.getInstancia().log(TipoLog.ERRO, ex);
}
return result;
}
| true |
698 | 18,048,834 | 15,461,830 | public void delete(DeleteInterceptorChain chain, DistinguishedName dn, LDAPConstraints constraints) throws LDAPException {
Connection con = (Connection) chain.getRequest().get(JdbcInsert.MYVD_DB_CON + this.dbInsertName);
if (con == null) {
throw new LDAPException("Operations Error", LDAPException.OPERATIONS_ERROR, "No Database Connection");
}
try {
con.setAutoCommit(false);
String uid = ((RDN) dn.getDN().getRDNs().get(0)).getValue();
PreparedStatement ps = con.prepareStatement(this.deleteSQL);
ps.setString(1, uid);
ps.executeUpdate();
con.commit();
} catch (SQLException e) {
try {
con.rollback();
} catch (SQLException e1) {
throw new LDAPException("Could not delete entry or rollback transaction", LDAPException.OPERATIONS_ERROR, e.toString(), e);
}
throw new LDAPException("Could not delete entry", LDAPException.OPERATIONS_ERROR, e.toString(), e);
}
}
| private void update() {
if (VERSION.contains("dev")) return;
System.out.println(updateURL_s);
try {
URL updateURL = new URL(updateURL_s);
InputStream uis = updateURL.openStream();
InputStreamReader uisr = new InputStreamReader(uis);
BufferedReader ubr = new BufferedReader(uisr);
String header = ubr.readLine();
if (header.equals("GENREMANUPDATEPAGE")) {
String cver = ubr.readLine();
String cdl = ubr.readLine();
if (!cver.equals(VERSION)) {
System.out.println("Update available!");
int i = JOptionPane.showConfirmDialog(this, Language.get("UPDATE_AVAILABLE_MSG").replaceAll("%o", VERSION).replaceAll("%c", cver), Language.get("UPDATE_AVAILABLE_TITLE"), JOptionPane.YES_NO_OPTION);
if (i == 0) {
URL url = new URL(cdl);
HttpURLConnection connection = (HttpURLConnection) url.openConnection();
connection.connect();
if (connection.getResponseCode() / 100 != 2) {
throw new Exception("Server error! Response code: " + connection.getResponseCode());
}
int contentLength = connection.getContentLength();
if (contentLength < 1) {
throw new Exception("Invalid content length!");
}
int size = contentLength;
File tempfile = File.createTempFile("genreman_update", ".zip");
tempfile.deleteOnExit();
RandomAccessFile file = new RandomAccessFile(tempfile, "rw");
InputStream stream = connection.getInputStream();
int downloaded = 0;
ProgressWindow pwin = new ProgressWindow(this, "Downloading");
pwin.setVisible(true);
pwin.setProgress(0);
pwin.setText("Connecting...");
while (downloaded < size) {
byte buffer[];
if (size - downloaded > 1024) {
buffer = new byte[1024];
} else {
buffer = new byte[size - downloaded];
}
int read = stream.read(buffer);
if (read == -1) break;
file.write(buffer, 0, read);
downloaded += read;
pwin.setProgress(downloaded / size);
}
file.close();
System.out.println("Downloaded file to " + tempfile.getAbsolutePath());
pwin.setVisible(false);
pwin.dispose();
pwin = null;
ZipInputStream zin = new ZipInputStream(new FileInputStream(tempfile));
ZipEntry entry;
while ((entry = zin.getNextEntry()) != null) {
File outf = new File(entry.getName());
System.out.println(outf.getAbsoluteFile());
if (outf.exists()) outf.delete();
OutputStream out = new FileOutputStream(outf);
byte[] buf = new byte[1024];
int len;
while ((len = zin.read(buf)) > 0) {
out.write(buf, 0, len);
}
out.close();
}
JOptionPane.showMessageDialog(this, Language.get("UPDATE_SUCCESS_MSG"), Language.get("UPDATE_SUCCESS_TITLE"), JOptionPane.INFORMATION_MESSAGE);
setVisible(false);
if (System.getProperty("os.name").indexOf("Windows") != -1) {
Runtime.getRuntime().exec("iTunesGenreArtManager.exe");
} else {
Runtime.getRuntime().exec("java -jar \"iTunes Genre Art Manager.app/Contents/Resources/Java/iTunes_Genre_Art_Manager.jar\"");
}
System.exit(0);
} else {
}
}
ubr.close();
uisr.close();
uis.close();
} else {
while (ubr.ready()) {
System.out.println(ubr.readLine());
}
ubr.close();
uisr.close();
uis.close();
throw new Exception("Update page had invalid header: " + header);
}
} catch (Exception ex) {
JOptionPane.showMessageDialog(this, Language.get("UPDATE_ERROR_MSG"), Language.get("UPDATE_ERROR_TITLE"), JOptionPane.ERROR_MESSAGE);
ex.printStackTrace();
}
}
| false |
699 | 13,356,869 | 2,612,645 | public void createZip(File zipFileName, Vector<File> selected) {
try {
byte[] buffer = new byte[4096];
ZipOutputStream out = new ZipOutputStream(new BufferedOutputStream(new FileOutputStream(zipFileName), 8096));
out.setLevel(Deflater.BEST_COMPRESSION);
out.setMethod(ZipOutputStream.DEFLATED);
for (int i = 0; i < selected.size(); i++) {
FileInputStream in = new FileInputStream(selected.get(i));
String file = selected.get(i).getPath();
if (file.indexOf("\\") != -1) file = file.substring(file.lastIndexOf(Options.fs) + 1, file.length());
ZipEntry ze = new ZipEntry(file);
out.putNextEntry(ze);
int len;
while ((len = in.read(buffer)) > 0) out.write(buffer, 0, len);
out.closeEntry();
in.close();
selected.get(i).delete();
}
out.close();
} catch (IllegalArgumentException iae) {
iae.printStackTrace();
} catch (FileNotFoundException fnfe) {
fnfe.printStackTrace();
} catch (IOException ioe) {
ioe.printStackTrace();
}
}
| public void populateDefaultIcons() {
DomainNameTree defaultmap = this.getDefaultIconMap();
DomainNameTree newmap = new DomainNameTree();
File iconDir = new File(this.usrIconDir);
if (!(iconDir.exists() && iconDir.isDirectory())) {
int s = JOptionPane.showConfirmDialog(null, "Create icon directory " + this.usrIconDir + "?", "Icon directory does not exist!", JOptionPane.YES_NO_CANCEL_OPTION);
if (s == JOptionPane.YES_OPTION) {
iconDir.mkdir();
} else {
return;
}
}
Set domains = defaultmap.domainSet();
Iterator iter = domains.iterator();
while (iter.hasNext()) {
String dname = (String) iter.next();
String fname = defaultmap.getImageFile(dname);
if (fname != null) {
System.out.println("Attempting to populate with:" + fname);
if (!fname.equals("null")) {
File file = new File(fname);
String newname = this.usrIconDir.concat(File.separator).concat(file.getName());
File newfile = new File(newname);
URL url = this.getClass().getResource(fname);
if (url != null) {
InputStream from = null;
FileOutputStream to = null;
try {
byte[] buffer = new byte[4096];
from = url.openStream();
to = new FileOutputStream(newfile);
int bytes_read = 0;
while ((bytes_read = from.read(buffer)) != -1) {
to.write(buffer, 0, bytes_read);
}
newmap.insert(new DomainNameNode(dname, newname));
} catch (Exception err) {
throw new RuntimeException("Problem saving image to file.", err);
} finally {
if (from != null) {
try {
from.close();
} catch (IOException err) {
throw new RuntimeException("Problem closing URL input stream.");
}
}
if (to != null) {
try {
to.close();
} catch (IOException err) {
throw new RuntimeException("Problem closing file output stream.");
}
}
}
} else {
throw new RuntimeException("Trying to copy the default icon " + fname + " from " + this.getClass().getPackage() + " but it does not exist.");
}
}
}
}
int s = JOptionPane.showConfirmDialog(null, "Save default mappings in " + this.usrConfigFile + "?", "Icon directory populated...", JOptionPane.YES_NO_CANCEL_OPTION);
if (s == JOptionPane.YES_OPTION) {
saveToRegistry(newmap);
}
}
| false |