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def output(self, pin, value): if pin < 0 or pin > 15: raise ValueError() self._output_pin(pin, value) self.mpsse_write_gpio()
Set the specified pin the provided high/low value. Value should be either HIGH/LOW or a boolean (true = high).
def group_and_sort_statements(stmt_list, ev_totals=None): def _count(stmt): if ev_totals is None: return len(stmt.evidence) else: return ev_totals[stmt.get_hash()] stmt_rows = defaultdict(list) stmt_counts = defaultdict(lambda: 0) arg_counts = defaultdict(la...
Group statements by type and arguments, and sort by prevalence. Parameters ---------- stmt_list : list[Statement] A list of INDRA statements. ev_totals : dict{int: int} A dictionary, keyed by statement hash (shallow) with counts of total evidence as the values. Including this wi...
def great_circle_distance(self, other): distance_latitude = math.radians(abs(self.latitude - other.latitude)) distance_longitude = math.radians(abs(self.longitude - other.longitude)) a = math.sin(distance_latitude / 2) * math.sin(distance_latitude / 2) \ + math.cos(math.radi...
Return the great-circle distance, in meters, from this geographic coordinates to the specified other point, i.e., the shortest distance over the earth’s surface, ‘as-the-crow-flies’ distance between the points, ignoring any natural elevations of the ground. Haversine formula:: ...
def get_eval_metrics(logits, labels, params): metrics = { "accuracy": _convert_to_eval_metric(padded_accuracy)(logits, labels), "accuracy_top5": _convert_to_eval_metric(padded_accuracy_top5)( logits, labels), "accuracy_per_sequence": _convert_to_eval_metric( padded_sequence_ac...
Return dictionary of model evaluation metrics.
def enbw(data): r N = len(data) return N * np.sum(data**2) / np.sum(data)**2
r"""Computes the equivalent noise bandwidth .. math:: ENBW = N \frac{\sum_{n=1}^{N} w_n^2}{\left(\sum_{n=1}^{N} w_n \right)^2} .. doctest:: >>> from spectrum import create_window, enbw >>> w = create_window(64, 'rectangular') >>> enbw(w) 1.0 The following table contains t...
def spherical_histogram(data=None, radial_bins="numpy", theta_bins=16, phi_bins=16, transformed=False, *args, **kwargs): dropna = kwargs.pop("dropna", True) data = _prepare_data(data, transformed=transformed, klass=SphericalHistogram, dropna=dropna) if isinstance(theta_bins, int): theta_range...
Facade construction function for the SphericalHistogram.
def _convert_operator(self, node_name, op_name, attrs, inputs): if op_name in convert_map: op_name, new_attrs, inputs = convert_map[op_name](attrs, inputs, self) else: raise NotImplementedError("Operator {} not implemented.".format(op_name)) if isinstance(op_name...
Convert from onnx operator to mxnet operator. The converter must specify conversions explicitly for incompatible name, and apply handlers to operator attributes. Parameters ---------- :param node_name : str name of the node to be translated. :param op_name : ...
def default_software_reset_type(self, reset_type): assert isinstance(reset_type, Target.ResetType) assert reset_type in (Target.ResetType.SW_SYSRESETREQ, Target.ResetType.SW_VECTRESET, Target.ResetType.SW_EMULATED) self._default_software_reset_type = rese...
! @brief Modify the default software reset method. @param self @param reset_type Must be one of the software reset types: Target.ResetType.SW_SYSRESETREQ, Target.ResetType.SW_VECTRESET, or Target.ResetType.SW_EMULATED.
def get_choices_for(self, field): choices = self._fields[field].choices if isinstance(choices, six.string_types): return [(d[], d[]) for d in self._choices_manager.get_all(choices)] else: return choices
Get the choices for the given fields. Args: field (str): Name of field. Returns: List of tuples. [(name, value),...]
def set_time(self, vfy_time): param = _lib.X509_VERIFY_PARAM_new() param = _ffi.gc(param, _lib.X509_VERIFY_PARAM_free) _lib.X509_VERIFY_PARAM_set_time(param, int(vfy_time.strftime())) _openssl_assert(_lib.X509_STORE_set1_param(self._store, param) != 0)
Set the time against which the certificates are verified. Normally the current time is used. .. note:: For example, you can determine if a certificate was valid at a given time. .. versionadded:: 17.0.0 :param datetime vfy_time: The verification time to set on th...
def default_username_algo(email): return smart_text(username)
Generate username for the Django user. :arg str/unicode email: the email address to use to generate a username :returns: str/unicode
def push_new_themes(catalog, portal_url, apikey): ckan_portal = RemoteCKAN(portal_url, apikey=apikey) existing_themes = ckan_portal.call_action() new_themes = [theme[] for theme in catalog[ ] if theme[] not in existing_themes] pushed_names = [] for new_theme in new_themes: name ...
Toma un catálogo y escribe los temas de la taxonomía que no están presentes. Args: catalog (DataJson): El catálogo de origen que contiene la taxonomía. portal_url (str): La URL del portal CKAN de destino. apikey (str): La apikey de un usuario con los perm...
def vecs_to_datmesh(x, y): x, y = meshgrid(x, y) out = zeros(x.shape + (2,), dtype=float) out[:, :, 0] = x out[:, :, 1] = y return out
Converts input arguments x and y to a 2d meshgrid, suitable for calling Means, Covariances and Realizations.
def get_nonoauth_parameters(self): return dict([(k, v) for k, v in self.items() if not k.startswith()])
Get any non-OAuth parameters.
def _row_to_str(self, row): _row_text = for col, width in self.col_widths.items(): _row_text += self.COLUMN_SEP l_pad, r_pad = self._split_int(width - len(row[col])) _row_text += .format( * (l_pad + self.PADDING), ...
Converts a list of strings to a correctly spaced and formatted row string. e.g. ['some', 'foo', 'bar'] --> '| some | foo | bar |' :param row: list :return: str
def qos(self, prefetch_size=0, prefetch_count=0, is_global=False): args = Writer() args.write_long(prefetch_size).\ write_short(prefetch_count).\ write_bit(is_global) self.send_frame(MethodFrame(self.channel_id, 60, 10, args)) self.channel.add_synchronou...
Set QoS on this channel.
def kw_changelist_view(self, request: HttpRequest, extra_context=None, **kw): return self.changelist_view(request, extra_context)
Changelist view which allow key-value arguments. :param request: HttpRequest :param extra_context: Extra context dict :param kw: Key-value dict :return: See changelist_view()
def setCurrentProfile(self, prof): if prof is None: self.clearActive() return profile = None blocked = self.signalsBlocked() self.blockSignals(True) for act in self._profileGroup.actions(): if prof in (act.p...
Sets the current profile for this toolbar to the inputed profile. :param prof | <projexui.widgets.xviewwidget.XViewProfile> || <str>
def clear_annotation_data(self): self.genes = set() self.annotations = [] self.term_annotations = {} self.gene_annotations = {}
Clear annotation data. Parameters ---------- Returns ------- None
def fast_maxwell_boltzmann(mass, file_name=None, return_code=False): r code = "" code = "def maxwell_boltzmann(v, T):\n" code += code += " if hasattr(v, ):\n" code += " d = 1\n" code += " m = %s\n" % mass code += " f = np.sqrt(m/2/...
r"""Return a function that returns values of a Maxwell-Boltzmann distribution. >>> from fast import Atom >>> mass = Atom("Rb", 87).mass >>> f = fast_maxwell_boltzmann(mass) >>> print f(0, 273.15+20) 0.00238221482739 >>> import numpy as np >>> v = np.linspace(-600, 600, 101) >>> dis...
def deserialize(self, xml_input, *args, **kwargs): return xmltodict.parse(xml_input, *args, **kwargs)
Convert XML to dict object
def cmd_join(self, connection, sender, target, payload): if payload: connection.join(payload) else: raise ValueError("No channel given")
Asks the bot to join a channel
def sqliteRowsToDicts(sqliteRows): return map(lambda r: dict(zip(r.keys(), r)), sqliteRows)
Unpacks sqlite rows as returned by fetchall into an array of simple dicts. :param sqliteRows: array of rows returned from fetchall DB call :return: array of dicts, keyed by the column names.
def make_strain_from_inj_object(self, inj, delta_t, detector_name, distance_scale=1): detector = Detector(detector_name) hp, hc = ringdown_td_approximants[inj[]]( inj, delta_t=delta_t, **self.extra_args) hp._epoch += inj[] ...
Make a h(t) strain time-series from an injection object as read from an hdf file. Parameters ----------- inj : injection object The injection object to turn into a strain h(t). delta_t : float Sample rate to make injection at. detector_name : stri...
def acoustic_similarity_directories(directories, analysis_function, distance_function, stop_check=None, call_back=None, multiprocessing=True): files = [] if call_back is not None: call_back() call_back(0, len(directories)) cur = 0 for d in directories: if not os.path.i...
Analyze many directories. Parameters ---------- directories : list of str List of fully specified paths to the directories to be analyzed
def clear(self): self.prop_dt_map = dict() self.prop_data = dict() self.rev_lookup = defaultdict(set)
convinience function to empty this fastrun container
def flush_all(self, conn): command = b response = yield from self._execute_simple_command( conn, command) if const.OK != response: raise ClientException(, response)
Its effect is to invalidate all existing items immediately
def spearmanr(x, y): from scipy import stats if not x or not y: return 0 corr, pvalue = stats.spearmanr(x, y) return corr
Michiel de Hoon's library (available in BioPython or standalone as PyCluster) returns Spearman rsb which does include a tie correction. >>> x = [5.05, 6.75, 3.21, 2.66] >>> y = [1.65, 26.5, -5.93, 7.96] >>> z = [1.65, 2.64, 2.64, 6.95] >>> round(spearmanr(x, y), 4) 0.4 >>> round(spearmanr(x...
def get_profiles(self): out = set(x.profile for x in self.requires if x.profile) out.update(x.profile for x in self.removes if x.profile) return out
Returns set of profile names referenced in this Feature :returns: set of profile names
def group_dashboard(request, group_slug): groups = get_user_groups(request.user) group = get_object_or_404(groups, slug=group_slug) tenants = get_user_tenants(request.user, group) can_edit_group = request.user.has_perm(, group) count = len(tenants) if count == 1: return red...
Dashboard for managing a TenantGroup.
def broadcast(self, event): try: if event.broadcasttype == "users": if len(self._users) > 0: self.log("Broadcasting to all users:", event.content, lvl=network) for useruuid in self._users.keys(): ...
Broadcasts an event either to all users or clients, depending on event flag
def BTC(cpu, dest, src): if dest.type == : value = dest.read() pos = src.read() % dest.size cpu.CF = value & (1 << pos) == 1 << pos dest.write(value ^ (1 << pos)) elif dest.type == : addr, pos = cpu._getMemoryBit(dest, src) ...
Bit test and complement. Selects the bit in a bit string (specified with the first operand, called the bit base) at the bit-position designated by the bit offset operand (second operand), stores the value of the bit in the CF flag, and complements the selected bit in the bit string. ...
def get(self, date=datetime.date.today(), country=None): if not country: country = self.country if country == "all": raise ValueError("You need to specify a country") if not isinstance(date, str) and not isinstance(date, int): date = date.year ...
Get the CPI value for a specific time. Defaults to today. This uses the closest method internally but sets limit to one day.
def check(f): if hasattr(f, ): return f else: @wraps(f) def decorated(*args, **kwargs): return check_conditions(f, args, kwargs) decorated.wrapped_fn = f return decorated
Wraps the function with a decorator that runs all of the pre/post conditions.
def upload(self, file_path, timeout=-1): return self._client.upload(file_path, timeout=timeout)
Upload an SPP ISO image file or a hotfix file to the appliance. The API supports upload of one hotfix at a time into the system. For the successful upload of a hotfix, ensure its original name and extension are not altered. Args: file_path: Full path to firmware. timeout...
def _load_wm_map(exclude_auto=None): exclude_auto = [] if not exclude_auto else exclude_auto path_here = os.path.dirname(os.path.abspath(__file__)) ontomap_file = os.path.join(path_here, ) mappings = {} def make_hume_prefix_map(): hume_ont = os.path.join(path_here, ) graph = rd...
Load an ontology map for world models. exclude_auto : None or list[tuple] A list of ontology mappings for which automated mappings should be excluded, e.g. [(HUME, UN)] would result in not using mappings from HUME to UN.
def unregister_transform(self, node_class, transform, predicate=None): self.transforms[node_class].remove((transform, predicate))
Unregister the given transform.
def cwd_filt2(depth): full_cwd = os.getcwdu() cwd = full_cwd.replace(HOME,"~").split(os.sep) if in cwd and len(cwd) == depth+1: depth += 1 drivepart = if sys.platform == and len(cwd) > depth: drivepart = os.path.splitdrive(full_cwd)[0] out = drivepart + .join(cwd[-depth:...
Return the last depth elements of the current working directory. $HOME is always replaced with '~'. If depth==0, the full path is returned.
def cancel(self): if not self.id: raise TypeError(u"You cant been created yet.") self.refresh_change_key() self.service.send(soap_request.delete_event(self)) return None
Cancels an event in Exchange. :: event = service.calendar().get_event(id='KEY HERE') event.cancel() This will send notifications to anyone who has not declined the meeting.
def recovery(self, using=None, **kwargs): return self._get_connection(using).indices.recovery(index=self._name, **kwargs)
The indices recovery API provides insight into on-going shard recoveries for the index. Any additional keyword arguments will be passed to ``Elasticsearch.indices.recovery`` unchanged.
def getLabelByName(self, name): name = name.lower() if name in self.stimLabels: return self.stimLabels[name] else: return None
Gets a label widget by it component name :param name: name of the AbstractStimulusComponent which this label is named after :type name: str :returns: :class:`DragLabel<sparkle.gui.drag_label.DragLabel>`
def _gen_doc(cls, summary, full_name, identifier, example_call, doc_str, show_examples): example_call = .join(map(str.strip, example_call.split()[1:])) ret = docstrings.dedents( % (summary, full_name, identifier, example_call, doc_str)) if show_examples: ...
Generate the documentation docstring for a PlotMethod
def parse_name_altree(record): name_tuple = split_name(record.value) if name_tuple[1] == : name_tuple = (name_tuple[0], , name_tuple[2]) maiden = record.sub_tag_value("SURN") if maiden: ending = + maiden + surname = name_tuple[1] if surname.endswith(ending...
Parse NAME structure assuming ALTREE dialect. In ALTREE dialect maiden name (if present) is saved as SURN sub-record and is also appended to family name in parens. Given name is saved in GIVN sub-record. Few examples: No maiden name: 1 NAME John /Smith/ 2 GIVN John With maiden na...
def _coerce_json_to_collection(self, json_repr): if isinstance(json_repr, dict): collection = json_repr else: try: collection = anyjson.loads(json_repr) except: _LOG.warn() return None return collection
Use to ensure that a JSON string (if found) is parsed to the equivalent dict in python. If the incoming value is already parsed, do nothing. If a string fails to parse, return None.
def getDirectory(*args): result = QtGui.QFileDialog.getDirectory(*args) if type(result) is not tuple: return result, bool(result) else: return result
Normalizes the getDirectory method between the different Qt wrappers. :return (<str> filename, <bool> accepted)
def get_configuration_set_by_id(self, id): for cs in self.configuration_sets: if cs.id == id: return cs return None
Finds a configuration set in the component by its ID. @param id The ID of the configuration set to search for. @return The ConfigurationSet object for the set, or None if it was not found.
def onBatchRejected(self, ledger_id): if ledger_id == POOL_LEDGER_ID: if isinstance(self.poolManager, TxnPoolManager): self.get_req_handler(POOL_LEDGER_ID).onBatchRejected() elif self.get_req_handler(ledger_id): self.get_req_handler(ledger_id).onBatchReje...
A batch of requests has been rejected, if stateRoot is None, reject the current batch. :param ledger_id: :param stateRoot: state root after the batch was created :return:
def getR(self, i=5, j=6): if self.refresh is True: self.getMatrix() return self.transM[i - 1, j - 1]
return transport matrix element, indexed by i, j, be default, return dispersion value, i.e. getR(5,6) in [m] :param i: row index, with initial index of 1 :param j: col indx, with initial index of 1 :return: transport matrix element
def dynamic_content_item_variant_delete(self, item_id, id, **kwargs): "https://developer.zendesk.com/rest_api/docs/core/dynamic_content api_path = "/api/v2/dynamic_content/items/{item_id}/variants/{id}.json" api_path = api_path.format(item_id=item_id, id=id) return self.call(api_path, me...
https://developer.zendesk.com/rest_api/docs/core/dynamic_content#delete-variant
def _read_linguas_from_files(env, linguas_files=None): import SCons.Util import SCons.Environment global _re_comment global _re_lang if not SCons.Util.is_List(linguas_files) \ and not SCons.Util.is_String(linguas_files) \ and not isinstance(linguas_files, SCons.Node.FS.B...
Parse `LINGUAS` file and return list of extracted languages
def winsorize(x, axis=0, limits=0.01): x = x.copy() if isinstance(x, pd.DataFrame): return x.apply(_winsorize_wrapper, axis=axis, args=(limits, )) else: return pd.Series(_winsorize_wrapper(x, limits).values, index=x.index)
`Winsorize <https://en.wikipedia.org/wiki/Winsorizing>`_ values based on limits
def AFF4Path(self, client_urn): if not self.HasField("pathtype"): raise ValueError("Can't determine AFF4 path without a valid pathtype.") first_component = self[0] dev = first_component.path if first_component.HasField("offset"): ...
Returns the AFF4 URN this pathspec will be stored under. Args: client_urn: A ClientURN. Returns: A urn that corresponds to this pathspec. Raises: ValueError: If pathspec is not of the correct type.
def absent( name, force=False, region=None, key=None, keyid=None, profile=None, remove_lc=False): ret = {: name, : True, : , : {}} asg = __salt__[](name, region, key, keyid, profile) if asg is None: ret[] = False ret[] = elif ...
Ensure the named autoscale group is deleted. name Name of the autoscale group. force Force deletion of autoscale group. remove_lc Delete the launch config as well. region The region to connect to. key Secret key to be used. keyid Access key t...
def getBody(self, url, method=, headers={}, data=None, socket=None): if not in headers: headers[] = [] return self.request(url, method, headers, data, socket)
Make an HTTP request and return the body
def requiv_contact_min(b, component, solve_for=None, **kwargs): hier = b.get_hierarchy() if not len(hier.get_value()): raise NotImplementedError("constraint for requiv_contact_min requires hierarchy") component_ps = _get_system_ps(b, component) parentorbit = hier.get_pa...
Create a constraint to determine the critical (at L1) value of requiv at which a constact will underflow. This will only be used for contacts for requiv_min :parameter b: the :class:`phoebe.frontend.bundle.Bundle` :parameter str component: the label of the star in which this constraint should ...
def authenticate(self): log.info("Authenticating to HP Cloud...") creds = self.creds access_key_id = creds.get(, ) secret_access_key = creds.get(, ) if access_key_id and secret_access_key: self.nova_client.client.os_access_key_id = access_key_id ...
Authenticate against the HP Cloud Identity Service. This is the first step in any hpcloud.com session, although this method is automatically called when accessing higher-level methods/attributes. **Examples of Credentials Configuration** - Bare minimum for authentication using HP API ...
def frombed(args): from jcvi.formats.fasta import Fasta from jcvi.formats.bed import Bed from jcvi.utils.cbook import fill p = OptionParser(frombed.__doc__) opts, args = p.parse_args(args) if len(args) != 3: sys.exit(not p.print_help()) bedfile, contigfasta, readfasta = args ...
%prog frombed bedfile contigfasta readfasta Convert read placement to contig format. This is useful before running BAMBUS.
def is_instance_of(self, some_class): try: if not isinstance(self.val, some_class): if hasattr(self.val, ): t = self.val.__name__ elif hasattr(self.val, ): t = self.val.__class__.__name__ else: ...
Asserts that val is an instance of the given class.
def _set_autobw_threshold_table_summary(self, v, load=False): if hasattr(v, "_utype"): v = v._utype(v) try: t = YANGDynClass(v,base=autobw_threshold_table_summary.autobw_threshold_table_summary, is_container=, presence=False, yang_name="autobw-threshold-table-summary", rest_name="autobw-thresho...
Setter method for autobw_threshold_table_summary, mapped from YANG variable /mpls_state/autobw_threshold_table_summary (container) If this variable is read-only (config: false) in the source YANG file, then _set_autobw_threshold_table_summary is considered as a private method. Backends looking to populate t...
def get_token(self, hash): tokens_snapshot = self.db.prefixed_db(NotificationPrefix.PREFIX_TOKEN).snapshot() try: val = tokens_snapshot.get(hash.ToBytes()) if val: event = SmartContractEvent.FromByteArray(val) return event except ...
Looks up a token by hash Args: hash (UInt160): The token to look up Returns: SmartContractEvent: A smart contract event with a contract that is an NEP5 Token
def _AddEvent(self, event): if hasattr(event, ): event_data_identifier = identifiers.SQLTableIdentifier( self._CONTAINER_TYPE_EVENT_DATA, event.event_data_row_identifier) lookup_key = event_data_identifier.CopyToString() event_data_identifier = self._event_data_identifier...
Adds an event. Args: event (EventObject): event.
async def traverse(self, func): async_executor = self if inspect.isasyncgenfunction(func): async for result in func(*async_executor.args): yield result else: yield await func(*async_executor.args)
Traverses an async function or generator, yielding each result. This function is private. The class should be used as an iterator instead of using this method.
def load_texture(self, texture_version): import numpy as np lowres_tex_template = % texture_version highres_tex_template = % texture_version from lace.mesh import Mesh from lace.cache import sc mesh_with_texture = Mesh(filename=sc(lowres_tex_template)) ...
Expect a texture version number as an integer, load the texture version from /is/ps/shared/data/body/template/texture_coordinates/. Currently there are versions [0, 1, 2, 3] availiable.
def list(args): jm = setup(args) jm.list(job_ids=get_ids(args.job_ids), print_array_jobs=args.print_array_jobs, print_dependencies=args.print_dependencies, status=args.status, long=args.long, print_times=args.print_times, ids_only=args.ids_only, names=args.names)
Lists the jobs in the given database.
def do_lzop_get(creds, url, path, decrypt, do_retry): assert url.endswith(), with files.DeleteOnError(path) as decomp_out: key = _uri_to_key(creds, url) with get_download_pipeline(PIPE, decomp_out.f, decrypt) as pl: g = gevent.spawn(write_and_return_error, key, pl.stdin) ...
Get and decompress a URL This streams the content directly to lzop; the compressed version is never stored on disk.
def split_by(self, layer, sep=): if not self.is_tagged(layer): self.tag(layer) return self.split_given_spans(self.spans(layer), sep=sep)
Split the text into multiple instances defined by elements of given layer. The spans for layer elements are extracted and feed to :py:meth:`~estnltk.text.Text.split_given_spans` method. Parameters ---------- layer: str String determining the layer that is used to de...
def locate_profile(profile=): from IPython.core.profiledir import ProfileDir, ProfileDirError try: pd = ProfileDir.find_profile_dir_by_name(get_ipython_dir(), profile) except ProfileDirError: raise IOError("Couldn't find profile %r" % profile) return pd.location
Find the path to the folder associated with a given profile. I.e. find $IPYTHONDIR/profile_whatever.
def zone_helper(zone): if zone is None: return None elif isinstance(zone, Zone): return zone.href elif zone.startswith(): return zone return Zone.get_or_create(name=zone).href
Zone finder by name. If zone doesn't exist, create it and return the href :param str zone: name of zone (if href, will be returned as is) :return str href: href of zone
def stop_scan(self): try: self.bable.stop_scan(sync=True) except bable_interface.BaBLEException: pass self.scanning = False
Stop to scan.
def build_requirements(docs_path, package_name="yacms"): mezz_string = "yacms==" project_path = os.path.join(docs_path, "..") requirements_file = os.path.join(project_path, package_name, "project_template", "requirements.txt") with open(requirements_file, "r") a...
Updates the requirements file with yacms's version number.
def forward(self, X): s = X[:-2] f = X[-2] w = X[-1] batch_size = len(f) x_idx = self._cuda( torch.as_tensor(np.arange(1, self.settings["lstm_dim"] + 1)).repeat( batch_size, 1 ) ) outputs = self._cuda(t...
Forward function. :param X: The input (batch) of the model contains word sequences for lstm, features and feature weights. :type X: For word sequences: a list of torch.Tensor pair (word sequence and word mask) of shape (batch_size, sequence_length). For features: tor...
def info(self): print("\n--- File Info ---") for key, val in self.file_header.items(): if key == : val = val.to_string(unit=u.hour, sep=) if key == : val = val.to_string(unit=u.deg, sep=) print("%16s : %32s" % (key, val)) ...
Print header information and other derived information.
def get_page_of_iterator(iterator, page_size, page_number): try: page_number = validate_page_number(page_number) except (PageNotAnInteger, EmptyPage): page_number = 1 start = (page_number - 1) * page_size end = (page_number * page_size) + 1 skipped_items = list(islice(iter...
Get a page from an interator, handling invalid input from the page number by defaulting to the first page.
def mm_top1( n_items, data, initial_params=None, alpha=0.0, max_iter=10000, tol=1e-8): return _mm(n_items, data, initial_params, alpha, max_iter, tol, _mm_top1)
Compute the ML estimate of model parameters using the MM algorithm. This function computes the maximum-likelihood (ML) estimate of model parameters given top-1 data (see :ref:`data-top1`), using the minorization-maximization (MM) algorithm [Hun04]_, [CD12]_. If ``alpha > 0``, the function returns the ...
def update_issue_remote_link_by_id(self, issue_key, link_id, url, title, global_id=None, relationship=None): data = {: {: url, : title}} if global_id: data[] = global_id if relationship: data[] = relationship url = .format(issue_key=issue_key, link_id=lin...
Update existing Remote Link on Issue :param issue_key: str :param link_id: str :param url: str :param title: str :param global_id: str, OPTIONAL: :param relationship: str, Optional. Default by built-in method: 'Web Link'
def update_reach_number_data(self): if not self.rapid_connect_file: log("Missing rapid_connect_file. " "Please set before running this function ...", "ERROR") if not self.riv_bas_id_file: log("Missing riv_bas_id_file. " "P...
Update the reach number data for the namelist based on input files. .. warning:: You need to make sure you set *rapid_connect_file* and *riv_bas_id_file* before running this function. Example: .. code:: python from RAPIDpy import RAPID rapid_man...
def expand(self, url): url = self.clean_url(url) expand_url = f payload = { : getattr(self, , ), : getattr(self, , ), : getattr(self, , None), : self.api_key, : self.user_id, : url, } response = self...
Expand implementation for Adf.ly Args: url: the URL you want to expand Returns: A string containing the expanded URL Raises: BadAPIResponseException: If the data is malformed or we got a bad status code on API response ShorteningError...
def get_anchor_point(self, anchor_name): if anchor_name in self._possible_anchors: return TikZNodeAnchor(self.handle, anchor_name) else: try: anchor = int(anchor_name.split()[1]) except: anchor = None if anchor is...
Return an anchor point of the node, if it exists.
def correlation(T, obs1, obs2=None, times=(1), maxtime=None, k=None, ncv=None, return_times=False): r T = _types.ensure_ndarray_or_sparse(T, ndim=2, uniform=True, kind=) n = T.shape[0] obs1 = _types.ensure_ndarray(obs1, ndim=1, size=n, kind=) obs2 = _types.ensure_ndarray_or_None(obs2, ndim=1, s...
r"""Time-correlation for equilibrium experiment. Parameters ---------- T : (M, M) ndarray or scipy.sparse matrix Transition matrix obs1 : (M,) ndarray Observable, represented as vector on state space obs2 : (M,) ndarray (optional) Second observable, for cross-correlations ...
def setup(self, phase, entry_pressure=, pore_volume=, throat_volume=): r self.settings[] = phase.name if pore_volume: self.settings[] = pore_volume if throat_volume: self.settings[] = throat_volume if entry_pressure: self.settings[] = entry_pre...
r""" Set up the required parameters for the algorithm Parameters ---------- phase : OpenPNM Phase object The phase to be injected into the Network. The Phase must have the capillary entry pressure values for the system. entry_pressure : string ...
def add_metadata(self, metadata_matrix, meta_index_store): assert isinstance(meta_index_store, IndexStore) assert len(metadata_matrix.shape) == 2 assert metadata_matrix.shape[0] == self.get_num_docs() return self._make_new_term_doc_matrix(new_X=self._X, ...
Returns a new corpus with a the metadata matrix and index store integrated. :param metadata_matrix: scipy.sparse matrix (# docs, # metadata) :param meta_index_store: IndexStore of metadata values :return: TermDocMatrixWithoutCategories
def permission_set(self, name, func=None): if func is None: return functools.partial(self.predicate, name) self.permission_sets[name] = func return func
Define a new permission set (directly, or as a decorator). E.g.:: @authz.permission_set('HTTP') def is_http_perm(perm): return perm.startswith('http.')
def clean(self): errors = {} cleaned = {} for name, validator in self.validate_schema.items(): val = getattr(self, name, None) try: cleaned[name] = validator.to_python(val) except formencode.api.Invalid, err: errors[na...
Cleans the data and throws ValidationError on failure
def folderitem(self, obj, item, index): obj = api.get_object(obj) uid = api.get_uid(obj) url = api.get_url(obj) title = api.get_title(obj) if self.show_categories_enabled(): category = obj.getCategoryTitle() if category not in s...
Service triggered each time an item is iterated in folderitems. The use of this service prevents the extra-loops in child objects. :obj: the instance of the class to be foldered :item: dict containing the properties of the object to be used by the template :index: current i...
def inplace_filter(func, sequence): target = 0 for source in xrange(len(sequence)): if func(sequence[source]): sequence[target] = sequence[source] target += 1 del sequence[target:]
Like Python's filter() builtin, but modifies the sequence in place. Example: >>> l = range(10) >>> inplace_filter(lambda x: x > 5, l) >>> l [6, 7, 8, 9] Performance considerations: the function iterates over the sequence, shuffling surviving members down and deleting whatever top part of the sequence is lef...
def is_all_field_none(self): if self._BillingInvoice is not None: return False if self._DraftPayment is not None: return False if self._MasterCardAction is not None: return False if self._Payment is not None: return False ...
:rtype: bool
def biclique(self, xmin, xmax, ymin, ymax): Aside = sum((self.maximum_hline_bundle(y, xmin, xmax) for y in range(ymin, ymax + 1)), []) Bside = sum((self.maximum_vline_bundle(x, ymin, ymax) for x in range(xmin, xmax + 1)), []) return Aside, Bsid...
Compute a maximum-sized complete bipartite graph contained in the rectangle defined by ``xmin, xmax, ymin, ymax`` where each chain of qubits is either a vertical line or a horizontal line. INPUTS: xmin,xmax,ymin,ymax: integers defining the bounds of a rectangle where we ...
def _make_cmap(colors, position=None, bit=False): bit_rgb = np.linspace(0,1,256) if position == None: position = np.linspace(0,1,len(colors)) else: if len(position) != len(colors): sys.exit("position length must be the same as colors") elif position[0] != 0 or positi...
_make_cmap takes a list of tuples which contain RGB values. The RGB values may either be in 8-bit [0 to 255] (in which bit must be set to True when called) or arithmetic [0 to 1] (default). _make_cmap returns a cmap with equally spaced colors. Arrange your tuples so that the first color is the lowest va...
def fromOPEndpointURL(cls, op_endpoint_url): service = cls() service.server_url = op_endpoint_url service.type_uris = [OPENID_IDP_2_0_TYPE] return service
Construct an OP-Identifier OpenIDServiceEndpoint object for a given OP Endpoint URL @param op_endpoint_url: The URL of the endpoint @rtype: OpenIDServiceEndpoint
def get_field_mappings(self, field): retdict = {} retdict[] = False retdict[] = False for (key, val) in iteritems(field): if key in self.mappings: if (key == and (val == "long" or val == "integer" or ...
Converts ES field mappings to .kibana field mappings
def bind(self, server, net=None, address=None): if _debug: NetworkServiceAccessPoint._debug("bind %r net=%r address=%r", server, net, address) if net in self.adapters: raise RuntimeError("already bound") adapter = NetworkAdapter(self, net) self.ad...
Create a network adapter object and bind.
def extract_ast_species(ast): species_id = "None" species_label = "None" species = [ (species_id, species_label) for (species_id, species_label) in ast.species if species_id ] if len(species) == 1: (species_id, species_label) = species[0] if not species_id: specie...
Extract species from ast.species set of tuples (id, label)
def accepts(*argtypes, **kwargtypes): theseargtypes = [T.TypeFactory(a) for a in argtypes] thesekwargtypes = {k : T.TypeFactory(a) for k,a in kwargtypes.items()} def _decorator(func): f = func.__wrapped__ if hasattr(func, "__wrapped__") else func try: argtypes = in...
A function decorator to specify argument types of the function. Types may be specified either in the order that they appear in the function or via keyword arguments (just as if you were calling the function). Example usage: | @accepts(Positive0) | def square_root(x): | ...
def add_at(self, moment: float, fn_process: Callable, *args: Any, **kwargs: Any) -> : delay = moment - self.now() if delay < 0.0: raise ValueError( f"The given moment to start the process ({moment:f}) is in the past (now is {self.now():f})." ) ret...
Adds a process to the simulation, which is made to start at the given exact time on the simulated clock. Note that times in the past when compared to the current moment on the simulated clock are forbidden. See method add() for more details.
def m2i(self, pkt, s): diff_tag, s = BER_tagging_dec(s, hidden_tag=self.ASN1_tag, implicit_tag=self.implicit_tag, explicit_tag=self.explicit_tag, safe=self.flexible_tag) if diff_tag...
The good thing about safedec is that it may still decode ASN1 even if there is a mismatch between the expected tag (self.ASN1_tag) and the actual tag; the decoded ASN1 object will simply be put into an ASN1_BADTAG object. However, safedec prevents the raising of exceptions needed for ASN...
def regex(pattern, flags: int = 0): def f(_, m): m.matches = [i for i in _.p.finditer(m.text or m.caption or "")] return bool(m.matches) return create("Regex", f, p=re.compile(pattern, flags))
Filter messages that match a given RegEx pattern. Args: pattern (``str``): The RegEx pattern as string, it will be applied to the text of a message. When a pattern matches, all the `Match Objects <https://docs.python.org/3/library/re.html#match-objects>`_ ...
def create_aggregator(self, subordinates): if not isinstance(subordinates, list): raise TypeError("subordinates can only be an instance of type list") for a in subordinates[:10]: if not isinstance(a, IEventSource): raise TypeError( ...
Creates an aggregator event source, collecting events from multiple sources. This way a single listener can listen for events coming from multiple sources, using a single blocking :py:func:`get_event` on the returned aggregator. in subordinates of type :class:`IEventSource` Subordi...
def write_json(json_obj, filename, mode="w", print_pretty=True): with open(filename, mode) as filey: if print_pretty: filey.writelines(print_json(json_obj)) else: filey.writelines(json.dumps(json_obj)) return filename
write_json will (optionally,pretty print) a json object to file Parameters ========== json_obj: the dict to print to json filename: the output file to write to pretty_print: if True, will use nicer formatting
def make_mujoco_env(env_id, seed, reward_scale=1.0): rank = MPI.COMM_WORLD.Get_rank() myseed = seed + 1000 * rank if seed is not None else None set_global_seeds(myseed) env = gym.make(env_id) logger_path = None if logger.get_dir() is None else os.path.join(logger.get_dir(), str(rank)) env ...
Create a wrapped, monitored gym.Env for MuJoCo.
def is_finished(self): if self._total_time > self._global_time_limit: logger.warning("Exceeded global time limit {} / {}".format( self._total_time, self._global_time_limit)) return True trials_done = all(trial.is_finished() for trial in self._trials) ...
Returns whether all trials have finished running.