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[ "Hi ! I think the issue comes from the dataset_infos.json file: it has the \"flat\" field twice.\r\n\r\nCan you try deleting this file and regenerating it please ?", "Thanks! That fixed that, but now I am getting:\r\nServer Error\r\nStatus code: 400\r\nException: KeyError\r\nMessage: 'feature'\r\n\r\nI checked the dataset_infos.json and pubmed_neg.py script, I don't use 'feature' anywhere as a key. Is the dataset viewer expecting that I do?" ]

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[ "Hi ! Indeed it says \"downloading and preparing\" but in your case it didn't need to download anything since you used local files (it would have thrown an error otherwise). I think we can improve the logging to make it clearer in this case", "@lhoestq Thank you for explaining. I am sorry but I was not clear about my intention. I didn't want to kill internet traffic; I wanted to kill all write activity. In other words, you can imagine that my storage has only read access but crashes on write.\r\n\r\nWhen run_clm.py is invoked with the same parameters, the hash in the cache directory \"datacache/trainpy.v2/json/default-471372bed4b51b53/0.0.0/...\" doesn't change, and my job can load cached data properly. This is great.\r\n\r\nUnfortunately, when params change (which happens sometimes), the hash changes and the old cache is invalid. datasets builder would create a new cache directory with the new hash and create JSON builder there, even though every JSON builder is the same. I didn't find a way to avoid such behavior.\r\n\r\nThis problem can be resolved when using datasets.map() for tokenizing and grouping text. This function allows me to specify output filenames with --cache_file_names, so that the cached files are always valid.\r\n\r\nThis is the code that I used to freeze cache filenames for tokenization. I wish I could do the same to datasets.load_dataset()\r\n```\r\n tokenized_datasets = raw_datasets.map(\r\n tokenize_function,\r\n batched=True,\r\n num_proc=data_args.preprocessing_num_workers,\r\n remove_columns=column_names,\r\n load_from_cache_file=not data_args.overwrite_cache,\r\n desc=\"Running tokenizer on dataset\",\r\n cache_file_names={k: os.path.join(model_args.cache_dir, f'{k}-tokenized') for k in raw_datasets},\r\n )\r\n```" ]

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[ "Hi ! What's your question ?" ]

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[ "Yes I agree, these should be as aligned as possible. Maybe we can also check the feedback in the survey at http://hf.co/oss-survey and see if people mentioned related things on the API (in particular if we go the breaking change way, it would be good to be sure we are taking the right direction for the community).", "I like this proposal.\r\n\r\n> There is also an important difference in terms of behavior:\r\nDataset.map adds new columns (with dict.update)\r\nBUT\r\nIterableDataset discards previous columns (it overwrites the dict)\r\nIMO the two methods should have the same behavior. This would be an important breaking change though.\r\n\r\n> The main breaking change would be the change of behavior of IterableDataset.map, because currently it discards all the previous columns instead of keeping them.\r\n\r\nYes, this behavior of `IterableDataset.map` was surprising to me the first time I used it because I was expecting the same behavior as `Dataset.map`, so I'm OK with the breaking change here.\r\n\r\n> IterableDataset only supports \"torch\" (it misses tf, jax, pandas, arrow) and is missing the parameters: columns, output_all_columns and format_kwargs\r\n\r\n\\+ it's also missing the actual formatting code (we return unformatted tensors)\r\n> We could have a completely aligned map method if both methods were lazy by default, but this is a very big breaking change so I'm not sure we can consider doing that.\r\n\r\n> For information, TFDS does lazy map by default, and has an additional .cache() method.\r\n\r\nIf I understand this part correctly, the idea would be for `Dataset.map` to behave similarly to `Dataset.with_transform` (lazy processing) and to have an option to cache processed data (with `.cache()`). This idea is really nice because it can also be applied to `IterableDataset` to fix https://github.com/huggingface/datasets/issues/3142 (again we get the aligned APIs). However, this change would break a lot of things, so I'm still not sure if this is a step in the right direction (maybe it's OK for Datasets 2.0?) \r\n> If the two APIs are more aligned it would be awesome for the examples in transformers, and it would create a satisfactory experience for users that want to switch from one mode to the other.\r\n\r\nYes, it would be amazing to have an option to easily switch between these two modes.\r\n\r\nI agree with the rest.\r\n", "> If I understand this part correctly, the idea would be for Dataset.map to behave similarly to Dataset.with_transform (lazy processing) and to have an option to cache processed data (with .cache()). This idea is really nice because it can also be applied to IterableDataset to fix #3142 (again we get the aligned APIs). However, this change would break a lot of things, so I'm still not sure if this is a step in the right direction (maybe it's OK for Datasets 2.0?)\r\n\r\nYea this is too big of a change in my opinion. Anyway it's fine as it is right now with streaming=lazy and regular=eager." ]

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[ "Hi ! What version of `datasets` are you using ? Can you also provide the logs you get before it raises the error ?" ]

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[ "maybe related to https://github.com/huggingface/datasets/issues/2859\r\n", "It looks like it's currently calling `HfFileSystem.ls()` ~8 times at the root and for each subdirectory:\r\n- \"\"\r\n- \"en.noblocklist\"\r\n- \"en.noclean\"\r\n- \"en\"\r\n- \"multilingual\"\r\n- \"realnewslike\"\r\n\r\nCurrently `ls` is slow because it iterates on all the files inside the repository.\r\n\r\nAn easy optimization would be to cache the result of each call to `ls`.\r\nWe can also optimize `ls` by using a tree structure per directory instead of a list of all the files.\r\n", "ok\r\n" ]

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[ "Hi ! Thanks for reporting :)\r\n\r\nWhen using a PyTorch's data loader with `num_workers>1` and an iterable dataset, each worker streams the exact same data by default, resulting in duplicate data when iterating using the data loader.\r\n\r\nWe can probably fix this in `datasets` by checking `torch.utils.data.get_worker_info()` which gives the worker id if it happens.", "> Hi ! Thanks for reporting :)\r\n> \r\n> When using a PyTorch's data loader with `num_workers>1` and an iterable dataset, each worker streams the exact same data by default, resulting in duplicate data when iterating using the data loader.\r\n> \r\n> We can probably fix this in `datasets` by checking `torch.utils.data.get_worker_info()` which gives the worker id if it happens.\r\nHi ! Thanks for reply\r\n\r\nDo u have some plans to fix the problem?\r\n", "Isn’t that somehow a bug on PyTorch side? (Just asking because this behavior seems quite general and maybe not what would be intended)", "From PyTorch's documentation [here](https://pytorch.org/docs/stable/data.html#dataset-types):\r\n\r\n> When using an IterableDataset with multi-process data loading. The same dataset object is replicated on each worker process, and thus the replicas must be configured differently to avoid duplicated data. See [IterableDataset](https://pytorch.org/docs/stable/data.html#torch.utils.data.IterableDataset) documentations for how to achieve this.\r\n\r\nIt looks like an intended behavior from PyTorch\r\n\r\nAs suggested in the [docstring of the IterableDataset class](https://pytorch.org/docs/stable/data.html#torch.utils.data.IterableDataset), we could pass a `worker_init_fn` to the DataLoader to fix this. It could be called `streaming_worker_init_fn` for example.\r\n\r\nHowever, while this solution works, I'm worried that many users simply don't know about this parameter and just start their training with duplicate data without knowing it. That's why I'm more in favor of integrating the check on the worker id directly in `datasets` in our implementation of `IterableDataset.__iter__`." ]

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[ "Hi ! I wasn't able to reproduce your error.\r\n\r\nCan you try to clear your cache at `~/.cache/huggingface/modules` and try again ?" ]

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[ "Hi ! It's slower indeed because a datasets on which `select`/`shard`/`train_test_split`/`shuffle` has been called has to do additional steps to retrieve the data of the dataset table in the right order.\r\n\r\nIndeed, if you call `dataset.select([0, 5, 10])`, the underlying table of the dataset is not altered to keep the examples at index 0, 5, and 10. Instead, an indices mapping is added on top of the table, that says that the first example is at index 0, the second at index 5 and the last one at index 10.\r\n\r\nTherefore accessing the examples of the dataset is slower because of the additional step that uses the indices mapping.\r\n\r\nThe step that takes the most time is to query the dataset table from a list of indices here:\r\n\r\nhttps://github.com/huggingface/datasets/blob/047dc756ed20fbf06e6bcaf910464aba0e20610a/src/datasets/formatting/formatting.py#L61-L63\r\n\r\nIn your case it can be made significantly faster by checking if the indices are contiguous. If they're contiguous, we could pass a python `slice` or `range` instead of a list of integers to `_query_table`. This way `_query_table` will do only one lookup to get the queried batch instead of `batch_size` lookups.\r\n\r\nGiven that calling `select` with contiguous indices is a common use case I'm in favor of implementing such an optimization :)\r\nLet me know what you think", "Hi, thanks for the response!\r\nI still don't understand why it is so much slower than iterating and saving:\r\n```python\r\nfrom datasets import load_dataset\r\n\r\noriginal = load_dataset(\"squad\", split=\"train\")\r\noriginal.to_json(\"from_original.json\") # Takes 0 seconds\r\n\r\nselected_subset1 = original.select([i for i in range(len(original))])\r\nselected_subset1.to_json(\"from_select1.json\") # Takes 99 seconds\r\n\r\nselected_subset2 = original.select([i for i in range(int(len(original) / 2))])\r\nselected_subset2.to_json(\"from_select2.json\") # Takes 47 seconds\r\n\r\nselected_subset3 = original.select([i for i in range(len(original)) if i % 2 == 0])\r\nselected_subset3.to_json(\"from_select3.json\") # Takes 49 seconds\r\n\r\nimport json\r\nimport time\r\ndef fast_to_json(dataset, path):\r\n start = time.time()\r\n with open(path, mode=\"w\") as f:\r\n for example in dataset:\r\n f.write(json.dumps(example, separators=(',', ':')) + \"\\n\")\r\n end = time.time()\r\n print(f\"Saved {len(dataset)} examples to {path} in {end - start} seconds.\")\r\n\r\nfast_to_json(original, \"from_original_fast.json\")\r\nfast_to_json(selected_subset1, \"from_select1_fast.json\")\r\nfast_to_json(selected_subset2, \"from_select2_fast.json\")\r\nfast_to_json(selected_subset3, \"from_select3_fast.json\")\r\n```\r\n```\r\nSaved 87599 examples to from_original_fast.json in 8 seconds.\r\nSaved 87599 examples to from_select1_fast.json in 10 seconds.\r\nSaved 43799 examples to from_select2_fast.json in 6 seconds.\r\nSaved 43800 examples to from_select3_fast.json in 5 seconds.\r\n```", "There are slight differences between what you're doing and what `to_json` is actually doing.\r\nIn particular `to_json` currently converts batches of rows (as an arrow table) to a pandas dataframe, and then to JSON Lines. From your benchmark it looks like it's faster if we don't use pandas.\r\n\r\nThanks for investigating, I think we can optimize `to_json` significantly thanks to your test.", "Thanks for your observations, @eladsegal! I spent some time with this and tried different approaches. Turns out that https://github.com/huggingface/datasets/blob/bb13373637b1acc55f8a468a8927a56cf4732230/src/datasets/io/json.py#L100 is giving the problem when we use `to_json` after `select`. This is when `indices` parameter in `query_table` is not `None` (if it is `None` then `to_json` should work as expected)\r\n\r\nIn order to circumvent this problem, I found out instead of doing Arrow Table -> Pandas-> JSON we can directly go to JSON by using `to_pydict()` which is a little slower than the current approach but at least `select` works properly now. Lmk what you guys think of it @lhoestq, @eladsegal?" ]

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[ "Hi, thanks for reporting! This is a duplicate of https://github.com/huggingface/datasets/issues/3240. We are working on a fix.\r\n\r\n" ]

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[ "I think it might come from two different issues:\r\n1. Google Drive is an unreliable host, mainly because of quota limitations\r\n2. the staging environment can sometimes raise some errors\r\n\r\nFor Google Drive tests we could set up some retries with backup URLs if necessary I guess.\r\nFor staging on the other hand, I guess we can investigate what causes this and discuss with the back-end team" ]

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[ "@LysandreJik not so sure who to @\r\nCould you help?" ]

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[ "Hi ! Can you try updating `fsspec` ? The minimum version is `2021.05.0`", "hey @lhoestq. I'm using `fsspec-2021.11.1` but still getting that error.", "Maybe this discussion can help:\r\n\r\nhttps://github.com/fsspec/filesystem_spec/issues/597#issuecomment-958646964", "Thanks @lhoestq. Downgrading `fsspec and s3fs` to `2021.10` fixed this issue!" ]

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[ "Thanks! See https://public.paws.wmcloud.org/User:Isaac_(WMF)/HuggingFace%20Wikipedia%20Processing.ipynb for more implementation details / some data around the overhead induced by adding the extra preprocessing steps (stripping link prefixes and magic words)" ]

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[ "See notebook by @geohci: https://public.paws.wmcloud.org/User:Isaac_(WMF)/HuggingFace%20Wikisource%20Processing.ipynb" ]

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[ "According to this [comment in the forum](https://discuss.huggingface.co/t/save-datasetdict-to-huggingface-hub/12075/8?u=lhoestq), using `push_to_hub` on a dataset with `ClassLabel` can also make the feature simply disappear when it's reloaded !", "Maybe we can also fix https://github.com/huggingface/datasets/issues/3035 while working on this because, as pointed out in my initial post, `save_to_disk` also saves the `dataset_info.json` file." ]

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[ "This issue was fixed by me calling `all_datasets.push_to_hub(\"hackernews_hiring_posts\")`.\r\n\r\nThe previous problems were from calling `all_datasets.save_to_disk` and then pushing with `my_repo.git_add` and `my_repo.push_to_hub`.\r\n" ]

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[ "duplicate of #2655" ]

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[ "Got solved it with push_to_hub, closing" ]

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[ "cc @juliensimon " ]

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[ "Hi ! Thanks for the suggestion :)\r\nIt makes sense to me, and it can surely be implemented by wrapping the user's function to make it a batched function. However I'm not a big fan of the inconsistency it would create with `map`: `with_transform` is batched by default while `map` isn't.\r\n\r\nIs there something you would like to contribute ? I can give you some pointers if you want" ]

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[ "Hi ! Feel free to access `batch[\"audio\"][\"array\"]` and `batch[\"audio\"][\"sampling_rate\"]` instead\r\n\r\n`datasets` 1.16 introduced some changes in `common_voice` and now the `path` field is no longer a path to a local file (but rather the path to the file in the archive it's extracted from)", "Thanks for the information. It works.", "Cool ! Closing this issue then" ]

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[ "Seems like the issue still exists,:\r\n`Downloading and preparing dataset clue/chid (download: 127.15 MiB, generated: 259.71 MiB, post-processed: Unknown size, total: 386.86 MiB) to /mnt/cache/tanhaochen/.cache/huggingface/datasets/clue/chid/1.0.0/e55b490cb7809dcd8db31b9a87119f2e2ec87cdc060da8a9ac070b070ca3e379...\r\nTraceback (most recent call last):\r\n File \"/mnt/cache/tanhaochen/PromptCLUE/test_datasets.py\", line 3, in <module>\r\n cluewsc2020 = datasets.load_dataset(\"clue\",\"chid\")\r\n File \"/mnt/cache/tanhaochen/dependencies/datasets/src/datasets/load.py\", line 1667, in load_dataset\r\n builder_instance.download_and_prepare(\r\n File \"/mnt/cache/tanhaochen/dependencies/datasets/src/datasets/builder.py\", line 593, in download_and_prepare\r\n self._download_and_prepare(\r\n File \"/mnt/cache/tanhaochen/dependencies/datasets/src/datasets/builder.py\", line 663, in _download_and_prepare\r\n verify_checksums(\r\n File \"/mnt/cache/tanhaochen/dependencies/datasets/src/datasets/utils/info_utils.py\", line 40, in verify_checksums\r\n raise NonMatchingChecksumError(error_msg + str(bad_urls))\r\ndatasets.utils.info_utils.NonMatchingChecksumError: Checksums didn't match for dataset source files:\r\n['https://storage.googleapis.com/cluebenchmark/tasks/chid_public.zip']\r\n`", "Hi,\r\n\r\nthe fix hasn't been merged yet (it should be merged early next week)." ]

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[ "This requires implementing `cast_column` for iterable datasets, it could be a very nice addition !\r\n\r\n<s>It can also be useful to be able to disable the audio/image decoding for the dataset viewer (see PR https://github.com/huggingface/datasets/pull/3430) cc @severo </s>\r\nEDIT: actually following https://github.com/huggingface/datasets/issues/3145 the dataset viewer might not need it anymore", "Just to clarify a bit. This feature is **always** needed when using the common voice dataset in streaming mode. So I think it's quite important" ]

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[ "Just a side note: duplicate #3264" ]

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[ "Hi, \r\n\r\ncould you please post this question on our [Forum](https://discuss.huggingface.co/) as we keep issues for bugs and feature requests? ", "> Hi,\r\n> \r\n> could you please post this question on our [Forum](https://discuss.huggingface.co/) as we keep issues for bugs and feature requests?\r\n\r\nok." ]

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[ "Hi ! Your function looks fine, I used to map `squad` locally and it indeed added the `example_id` field correctly.\r\n\r\nHowever I think that in the `compute_loss` method only a subset of the fields are available: the model inputs. Since `example_id` is not a model input (it's not passed as a parameter to the model), the data loader doesn't need to return it by default.\r\n\r\nHowever you can disable this behavior by setting `remove_unused_columns` to `False` to your training arguments. In this case in `compute_loss` you will get the full item with all the fields.\r\n\r\nNote that since the model doesn't take `example_id` as input, you will have to remove it from the inputs when `model(**inputs)` is called", "Hi, I have set **args.remove_unused_columns=False** and **training_args.remove_unused_columns=False**, but the field doesn't been contained yet.\r\n```\r\ndef main():\r\n argp = HfArgumentParser(TrainingArguments)\r\n # The HfArgumentParser object collects command-line arguments into an object (and provides default values for unspecified arguments).\r\n # In particular, TrainingArguments has several keys that you'll need/want to specify (when you call run.py from the command line):\r\n # --do_train\r\n # When included, this argument tells the script to train a model.\r\n # See docstrings for \"--task\" and \"--dataset\" for how the training dataset is selected.\r\n # --do_eval\r\n # When included, this argument tells the script to evaluate the trained/loaded model on the validation split of the selected dataset.\r\n # --per_device_train_batch_size <int, default=8>\r\n # This is the training batch size.\r\n # If you're running on GPU, you should try to make this as large as you can without getting CUDA out-of-memory errors.\r\n # For reference, with --max_length=128 and the default ELECTRA-small model, a batch size of 32 should fit in 4gb of GPU memory.\r\n # --num_train_epochs <float, default=3.0>\r\n # How many passes to do through the training data.\r\n # --output_dir <path>\r\n # Where to put the trained model checkpoint(s) and any eval predictions.\r\n # *This argument is required*.\r\n\r\n argp.add_argument('--model', type=str,\r\n default='google/electra-small-discriminator',\r\n help=\"\"\"This argument specifies the base model to fine-tune.\r\n This should either be a HuggingFace model ID (see https://huggingface.co/models)\r\n or a path to a saved model checkpoint (a folder containing config.json and pytorch_model.bin).\"\"\")\r\n argp.add_argument('--task', type=str, choices=['nli', 'qa'], required=True,\r\n help=\"\"\"This argument specifies which task to train/evaluate on.\r\n Pass \"nli\" for natural language inference or \"qa\" for question answering.\r\n By default, \"nli\" will use the SNLI dataset, and \"qa\" will use the SQuAD dataset.\"\"\")\r\n argp.add_argument('--dataset', type=str, default=None,\r\n help=\"\"\"This argument overrides the default dataset used for the specified task.\"\"\")\r\n argp.add_argument('--max_length', type=int, default=128,\r\n help=\"\"\"This argument limits the maximum sequence length used during training/evaluation.\r\n Shorter sequence lengths need less memory and computation time, but some examples may end up getting truncated.\"\"\")\r\n argp.add_argument('--max_train_samples', type=int, default=None,\r\n help='Limit the number of examples to train on.')\r\n argp.add_argument('--max_eval_samples', type=int, default=None,\r\n help='Limit the number of examples to evaluate on.')\r\n\r\n argp.remove_unused_columns = False\r\n training_args, args = argp.parse_args_into_dataclasses()\r\n args.remove_unused_columns=False\r\n training_args.remove_unused_columns=False\r\n```\r\n\r\n\r\n```\r\n**************** train_dataset: Dataset({\r\n features: ['id', 'title', 'context', 'question', 'answers'],\r\n num_rows: 87599\r\n})\r\n\r\n\r\n**************** train_dataset_featurized: Dataset({\r\n features: ['attention_mask', 'end_positions', 'input_ids', 'start_positions', 'token_type_ids'],\r\n num_rows: 87714\r\n})\r\n```", "Hi, I print the value, all are set to False, but don't work.\r\n```\r\n********************* training_args: TrainingArguments(\r\n_n_gpu=1,\r\nadafactor=False,\r\nadam_beta1=0.9,\r\nadam_beta2=0.999,\r\nadam_epsilon=1e-08,\r\ndataloader_drop_last=False,\r\ndataloader_num_workers=0,\r\ndataloader_pin_memory=True,\r\nddp_find_unused_parameters=None,\r\ndebug=[],\r\ndeepspeed=None,\r\ndisable_tqdm=False,\r\ndo_eval=False,\r\ndo_predict=False,\r\ndo_train=True,\r\neval_accumulation_steps=None,\r\neval_steps=None,\r\nevaluation_strategy=IntervalStrategy.NO,\r\nfp16=False,\r\nfp16_backend=auto,\r\nfp16_full_eval=False,\r\nfp16_opt_level=O1,\r\ngradient_accumulation_steps=1,\r\ngreater_is_better=None,\r\ngroup_by_length=False,\r\nignore_data_skip=False,\r\nlabel_names=None,\r\nlabel_smoothing_factor=0.0,\r\nlearning_rate=5e-05,\r\nlength_column_name=length,\r\nload_best_model_at_end=False,\r\nlocal_rank=-1,\r\nlog_level=-1,\r\nlog_level_replica=-1,\r\nlog_on_each_node=True,\r\nlogging_dir=./re_trained_model/runs/Dec01_14-15-08_399b9290604c,\r\nlogging_first_step=False,\r\nlogging_steps=500,\r\nlogging_strategy=IntervalStrategy.STEPS,\r\nlr_scheduler_type=SchedulerType.LINEAR,\r\nmax_grad_norm=1.0,\r\nmax_steps=-1,\r\nmetric_for_best_model=None,\r\nmp_parameters=,\r\nno_cuda=False,\r\nnum_train_epochs=3.0,\r\noutput_dir=./re_trained_model,\r\noverwrite_output_dir=False,\r\npast_index=-1,\r\nper_device_eval_batch_size=8,\r\nper_device_train_batch_size=8,\r\nprediction_loss_only=False,\r\npush_to_hub=False,\r\npush_to_hub_model_id=re_trained_model,\r\npush_to_hub_organization=None,\r\npush_to_hub_token=None,\r\nremove_unused_columns=False,\r\nreport_to=['tensorboard'],\r\nresume_from_checkpoint=None,\r\nrun_name=./re_trained_model,\r\nsave_on_each_node=False,\r\nsave_steps=500,\r\nsave_strategy=IntervalStrategy.STEPS,\r\nsave_total_limit=None,\r\nseed=42,\r\nsharded_ddp=[],\r\nskip_memory_metrics=True,\r\ntpu_metrics_debug=False,\r\ntpu_num_cores=None,\r\nuse_legacy_prediction_loop=False,\r\nwarmup_ratio=0.0,\r\nwarmup_steps=0,\r\nweight_decay=0.0,\r\n)\r\n```\r\n```\r\n********************* args: Namespace(dataset='squad', max_eval_samples=None, max_length=128, max_train_samples=None, model='google/electra-small-discriminator', remove_unused_columns=False, task='qa')\r\n2021-12-01 14:15:10,048 - WARNING - datasets.builder - Reusing dataset squad (/root/.cache/huggingface/datasets/squad/plain_text/1.0.0/d6ec3ceb99ca480ce37cdd35555d6cb2511d223b9150cce08a837ef62ffea453)\r\nSome weights of the model checkpoint at google/electra-small-discriminator were not used when initializing ElectraForQuestionAnswering: ['discriminator_predictions.dense_prediction.weight', 'discriminator_predictions.dense_prediction.bias', 'discriminator_predictions.dense.weight', 'discriminator_predictions.dense.bias']\r\n- This IS expected if you are initializing ElectraForQuestionAnswering from the checkpoint of a model trained on another task or with another architecture (e.g. initializing a BertForSequenceClassification model from a BertForPreTraining model).\r\n- This IS NOT expected if you are initializing ElectraForQuestionAnswering from the checkpoint of a model that you expect to be exactly identical (initializing a BertForSequenceClassification model from a BertForSequenceClassification model).\r\nSome weights of ElectraForQuestionAnswering were not initialized from the model checkpoint at google/electra-small-discriminator and are newly initialized: ['qa_outputs.bias', 'qa_outputs.weight']\r\nYou should probably TRAIN this model on a down-stream task to be able to use it for predictions and inference.\r\nPreprocessing data... (this takes a little bit, should only happen once per dataset)\r\n```", "Hmmm, it might be because the default data collator removes all the fields with `string` type:\r\n\r\nhttps://github.com/huggingface/transformers/blob/4c0dd199c8305903564c2edeae23d294edd4b321/src/transformers/data/data_collator.py#L107-L112\r\n\r\nI guess you also need a custom data collator that doesn't remove them.", "can you give a tutorial about how to do this?", "I overwrite **get_train_dataloader**, and remove **_remove_unused_columns**, but it doesn't work.\r\n\r\n```\r\n def get_train_dataloader(self) -> DataLoader:\r\n \"\"\"\r\n Returns the training :class:`~torch.utils.data.DataLoader`.\r\n\r\n Will use no sampler if :obj:`self.train_dataset` does not implement :obj:`__len__`, a random sampler (adapted\r\n to distributed training if necessary) otherwise.\r\n\r\n Subclass and override this method if you want to inject some custom behavior.\r\n \"\"\"\r\n if self.train_dataset is None:\r\n raise ValueError(\"Trainer: training requires a train_dataset.\")\r\n\r\n train_dataset = self.train_dataset\r\n # if is_datasets_available() and isinstance(train_dataset, datasets.Dataset):\r\n # train_dataset = self._remove_unused_columns(train_dataset, description=\"training\")\r\n\r\n if isinstance(train_dataset, torch.utils.data.IterableDataset):\r\n if self.args.world_size > 1:\r\n train_dataset = IterableDatasetShard(\r\n train_dataset,\r\n batch_size=self.args.train_batch_size,\r\n drop_last=self.args.dataloader_drop_last,\r\n num_processes=self.args.world_size,\r\n process_index=self.args.process_index,\r\n )\r\n\r\n return DataLoader(\r\n train_dataset,\r\n batch_size=self.args.train_batch_size,\r\n collate_fn=self.data_collator,\r\n num_workers=self.args.dataloader_num_workers,\r\n pin_memory=self.args.dataloader_pin_memory,\r\n )\r\n\r\n train_sampler = self._get_train_sampler()\r\n\r\n return DataLoader(\r\n train_dataset,\r\n batch_size=self.args.train_batch_size,\r\n sampler=train_sampler,\r\n collate_fn=self.data_collator,\r\n drop_last=self.args.dataloader_drop_last,\r\n num_workers=self.args.dataloader_num_workers,\r\n pin_memory=self.args.dataloader_pin_memory,\r\n )\r\n```", "Hi, it works now, thank you.\r\n1. **args.remove_unused_columns=False** and **training_args.remove_unused_columns=False**\r\n2. overwrite **get_train_dataloader**, and remove **_remove_unused_columns**\r\n3. add new fields, and can be got in **inputs**. " ]

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[ "Hi ! I think the issue comes from the dataset_infos.json file: it has the \"flat\" field twice.\r\n\r\nCan you try deleting this file and regenerating it please ?", "Thanks! That fixed that, but now I am getting:\r\nServer Error\r\nStatus code: 400\r\nException: KeyError\r\nMessage: 'feature'\r\n\r\nI checked the dataset_infos.json and pubmed_neg.py script, I don't use 'feature' anywhere as a key. Is the dataset viewer expecting that I do?" ]

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[ "Hi ! Indeed it says \"downloading and preparing\" but in your case it didn't need to download anything since you used local files (it would have thrown an error otherwise). I think we can improve the logging to make it clearer in this case", "@lhoestq Thank you for explaining. I am sorry but I was not clear about my intention. I didn't want to kill internet traffic; I wanted to kill all write activity. In other words, you can imagine that my storage has only read access but crashes on write.\r\n\r\nWhen run_clm.py is invoked with the same parameters, the hash in the cache directory \"datacache/trainpy.v2/json/default-471372bed4b51b53/0.0.0/...\" doesn't change, and my job can load cached data properly. This is great.\r\n\r\nUnfortunately, when params change (which happens sometimes), the hash changes and the old cache is invalid. datasets builder would create a new cache directory with the new hash and create JSON builder there, even though every JSON builder is the same. I didn't find a way to avoid such behavior.\r\n\r\nThis problem can be resolved when using datasets.map() for tokenizing and grouping text. This function allows me to specify output filenames with --cache_file_names, so that the cached files are always valid.\r\n\r\nThis is the code that I used to freeze cache filenames for tokenization. I wish I could do the same to datasets.load_dataset()\r\n```\r\n tokenized_datasets = raw_datasets.map(\r\n tokenize_function,\r\n batched=True,\r\n num_proc=data_args.preprocessing_num_workers,\r\n remove_columns=column_names,\r\n load_from_cache_file=not data_args.overwrite_cache,\r\n desc=\"Running tokenizer on dataset\",\r\n cache_file_names={k: os.path.join(model_args.cache_dir, f'{k}-tokenized') for k in raw_datasets},\r\n )\r\n```" ]

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[ "Hi ! What's your question ?" ]

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[ "Yes I agree, these should be as aligned as possible. Maybe we can also check the feedback in the survey at http://hf.co/oss-survey and see if people mentioned related things on the API (in particular if we go the breaking change way, it would be good to be sure we are taking the right direction for the community).", "I like this proposal.\r\n\r\n> There is also an important difference in terms of behavior:\r\nDataset.map adds new columns (with dict.update)\r\nBUT\r\nIterableDataset discards previous columns (it overwrites the dict)\r\nIMO the two methods should have the same behavior. This would be an important breaking change though.\r\n\r\n> The main breaking change would be the change of behavior of IterableDataset.map, because currently it discards all the previous columns instead of keeping them.\r\n\r\nYes, this behavior of `IterableDataset.map` was surprising to me the first time I used it because I was expecting the same behavior as `Dataset.map`, so I'm OK with the breaking change here.\r\n\r\n> IterableDataset only supports \"torch\" (it misses tf, jax, pandas, arrow) and is missing the parameters: columns, output_all_columns and format_kwargs\r\n\r\n\\+ it's also missing the actual formatting code (we return unformatted tensors)\r\n> We could have a completely aligned map method if both methods were lazy by default, but this is a very big breaking change so I'm not sure we can consider doing that.\r\n\r\n> For information, TFDS does lazy map by default, and has an additional .cache() method.\r\n\r\nIf I understand this part correctly, the idea would be for `Dataset.map` to behave similarly to `Dataset.with_transform` (lazy processing) and to have an option to cache processed data (with `.cache()`). This idea is really nice because it can also be applied to `IterableDataset` to fix https://github.com/huggingface/datasets/issues/3142 (again we get the aligned APIs). However, this change would break a lot of things, so I'm still not sure if this is a step in the right direction (maybe it's OK for Datasets 2.0?) \r\n> If the two APIs are more aligned it would be awesome for the examples in transformers, and it would create a satisfactory experience for users that want to switch from one mode to the other.\r\n\r\nYes, it would be amazing to have an option to easily switch between these two modes.\r\n\r\nI agree with the rest.\r\n", "> If I understand this part correctly, the idea would be for Dataset.map to behave similarly to Dataset.with_transform (lazy processing) and to have an option to cache processed data (with .cache()). This idea is really nice because it can also be applied to IterableDataset to fix #3142 (again we get the aligned APIs). However, this change would break a lot of things, so I'm still not sure if this is a step in the right direction (maybe it's OK for Datasets 2.0?)\r\n\r\nYea this is too big of a change in my opinion. Anyway it's fine as it is right now with streaming=lazy and regular=eager." ]

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[ "Hi ! What version of `datasets` are you using ? Can you also provide the logs you get before it raises the error ?" ]

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[ "maybe related to https://github.com/huggingface/datasets/issues/2859\r\n", "It looks like it's currently calling `HfFileSystem.ls()` ~8 times at the root and for each subdirectory:\r\n- \"\"\r\n- \"en.noblocklist\"\r\n- \"en.noclean\"\r\n- \"en\"\r\n- \"multilingual\"\r\n- \"realnewslike\"\r\n\r\nCurrently `ls` is slow because it iterates on all the files inside the repository.\r\n\r\nAn easy optimization would be to cache the result of each call to `ls`.\r\nWe can also optimize `ls` by using a tree structure per directory instead of a list of all the files.\r\n", "ok\r\n" ]

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[ "Hi ! Thanks for reporting :)\r\n\r\nWhen using a PyTorch's data loader with `num_workers>1` and an iterable dataset, each worker streams the exact same data by default, resulting in duplicate data when iterating using the data loader.\r\n\r\nWe can probably fix this in `datasets` by checking `torch.utils.data.get_worker_info()` which gives the worker id if it happens.", "> Hi ! Thanks for reporting :)\r\n> \r\n> When using a PyTorch's data loader with `num_workers>1` and an iterable dataset, each worker streams the exact same data by default, resulting in duplicate data when iterating using the data loader.\r\n> \r\n> We can probably fix this in `datasets` by checking `torch.utils.data.get_worker_info()` which gives the worker id if it happens.\r\nHi ! Thanks for reply\r\n\r\nDo u have some plans to fix the problem?\r\n", "Isn’t that somehow a bug on PyTorch side? (Just asking because this behavior seems quite general and maybe not what would be intended)", "From PyTorch's documentation [here](https://pytorch.org/docs/stable/data.html#dataset-types):\r\n\r\n> When using an IterableDataset with multi-process data loading. The same dataset object is replicated on each worker process, and thus the replicas must be configured differently to avoid duplicated data. See [IterableDataset](https://pytorch.org/docs/stable/data.html#torch.utils.data.IterableDataset) documentations for how to achieve this.\r\n\r\nIt looks like an intended behavior from PyTorch\r\n\r\nAs suggested in the [docstring of the IterableDataset class](https://pytorch.org/docs/stable/data.html#torch.utils.data.IterableDataset), we could pass a `worker_init_fn` to the DataLoader to fix this. It could be called `streaming_worker_init_fn` for example.\r\n\r\nHowever, while this solution works, I'm worried that many users simply don't know about this parameter and just start their training with duplicate data without knowing it. That's why I'm more in favor of integrating the check on the worker id directly in `datasets` in our implementation of `IterableDataset.__iter__`." ]

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[ "Hi ! I wasn't able to reproduce your error.\r\n\r\nCan you try to clear your cache at `~/.cache/huggingface/modules` and try again ?" ]

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[ "Hi ! It's slower indeed because a datasets on which `select`/`shard`/`train_test_split`/`shuffle` has been called has to do additional steps to retrieve the data of the dataset table in the right order.\r\n\r\nIndeed, if you call `dataset.select([0, 5, 10])`, the underlying table of the dataset is not altered to keep the examples at index 0, 5, and 10. Instead, an indices mapping is added on top of the table, that says that the first example is at index 0, the second at index 5 and the last one at index 10.\r\n\r\nTherefore accessing the examples of the dataset is slower because of the additional step that uses the indices mapping.\r\n\r\nThe step that takes the most time is to query the dataset table from a list of indices here:\r\n\r\nhttps://github.com/huggingface/datasets/blob/047dc756ed20fbf06e6bcaf910464aba0e20610a/src/datasets/formatting/formatting.py#L61-L63\r\n\r\nIn your case it can be made significantly faster by checking if the indices are contiguous. If they're contiguous, we could pass a python `slice` or `range` instead of a list of integers to `_query_table`. This way `_query_table` will do only one lookup to get the queried batch instead of `batch_size` lookups.\r\n\r\nGiven that calling `select` with contiguous indices is a common use case I'm in favor of implementing such an optimization :)\r\nLet me know what you think", "Hi, thanks for the response!\r\nI still don't understand why it is so much slower than iterating and saving:\r\n```python\r\nfrom datasets import load_dataset\r\n\r\noriginal = load_dataset(\"squad\", split=\"train\")\r\noriginal.to_json(\"from_original.json\") # Takes 0 seconds\r\n\r\nselected_subset1 = original.select([i for i in range(len(original))])\r\nselected_subset1.to_json(\"from_select1.json\") # Takes 99 seconds\r\n\r\nselected_subset2 = original.select([i for i in range(int(len(original) / 2))])\r\nselected_subset2.to_json(\"from_select2.json\") # Takes 47 seconds\r\n\r\nselected_subset3 = original.select([i for i in range(len(original)) if i % 2 == 0])\r\nselected_subset3.to_json(\"from_select3.json\") # Takes 49 seconds\r\n\r\nimport json\r\nimport time\r\ndef fast_to_json(dataset, path):\r\n start = time.time()\r\n with open(path, mode=\"w\") as f:\r\n for example in dataset:\r\n f.write(json.dumps(example, separators=(',', ':')) + \"\\n\")\r\n end = time.time()\r\n print(f\"Saved {len(dataset)} examples to {path} in {end - start} seconds.\")\r\n\r\nfast_to_json(original, \"from_original_fast.json\")\r\nfast_to_json(selected_subset1, \"from_select1_fast.json\")\r\nfast_to_json(selected_subset2, \"from_select2_fast.json\")\r\nfast_to_json(selected_subset3, \"from_select3_fast.json\")\r\n```\r\n```\r\nSaved 87599 examples to from_original_fast.json in 8 seconds.\r\nSaved 87599 examples to from_select1_fast.json in 10 seconds.\r\nSaved 43799 examples to from_select2_fast.json in 6 seconds.\r\nSaved 43800 examples to from_select3_fast.json in 5 seconds.\r\n```", "There are slight differences between what you're doing and what `to_json` is actually doing.\r\nIn particular `to_json` currently converts batches of rows (as an arrow table) to a pandas dataframe, and then to JSON Lines. From your benchmark it looks like it's faster if we don't use pandas.\r\n\r\nThanks for investigating, I think we can optimize `to_json` significantly thanks to your test.", "Thanks for your observations, @eladsegal! I spent some time with this and tried different approaches. Turns out that https://github.com/huggingface/datasets/blob/bb13373637b1acc55f8a468a8927a56cf4732230/src/datasets/io/json.py#L100 is giving the problem when we use `to_json` after `select`. This is when `indices` parameter in `query_table` is not `None` (if it is `None` then `to_json` should work as expected)\r\n\r\nIn order to circumvent this problem, I found out instead of doing Arrow Table -> Pandas-> JSON we can directly go to JSON by using `to_pydict()` which is a little slower than the current approach but at least `select` works properly now. Lmk what you guys think of it @lhoestq, @eladsegal?" ]

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[ "Hi, thanks for reporting! This is a duplicate of https://github.com/huggingface/datasets/issues/3240. We are working on a fix.\r\n\r\n" ]

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[ "I think it might come from two different issues:\r\n1. Google Drive is an unreliable host, mainly because of quota limitations\r\n2. the staging environment can sometimes raise some errors\r\n\r\nFor Google Drive tests we could set up some retries with backup URLs if necessary I guess.\r\nFor staging on the other hand, I guess we can investigate what causes this and discuss with the back-end team" ]

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[ "@LysandreJik not so sure who to @\r\nCould you help?" ]

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[ "Hi ! Can you try updating `fsspec` ? The minimum version is `2021.05.0`", "hey @lhoestq. I'm using `fsspec-2021.11.1` but still getting that error.", "Maybe this discussion can help:\r\n\r\nhttps://github.com/fsspec/filesystem_spec/issues/597#issuecomment-958646964", "Thanks @lhoestq. Downgrading `fsspec and s3fs` to `2021.10` fixed this issue!" ]

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[ "Thanks! See https://public.paws.wmcloud.org/User:Isaac_(WMF)/HuggingFace%20Wikipedia%20Processing.ipynb for more implementation details / some data around the overhead induced by adding the extra preprocessing steps (stripping link prefixes and magic words)" ]

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[ "See notebook by @geohci: https://public.paws.wmcloud.org/User:Isaac_(WMF)/HuggingFace%20Wikisource%20Processing.ipynb" ]

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