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701 | 22705496_0 | DNA double-strand breaks ( DSBs ) in embryonic stem ( ES ) cells are repaired primarily by homologous recombination ( HR ) . | [
"none"
] |
702 | 22705496_1 | The mechanism by which HR is regulated in these cells , however , remains enigmatic . | [
"none"
] |
703 | 22705496_2 | To gain insight into such regulatory mechanisms , we have asked how protein levels of Rad51 , a key component of HR , are controlled in mouse ES cells and mouse embryo fibroblasts ( MEFs ) . | [
"none"
] |
704 | 22705496_3 | The Rad51 protein level is about 15-fold higher in ES cells than in MEFs . | [
"none"
] |
705 | 22705496_4 | The level of Rad51 mRNA , however , is only higher , indicating that the differences in mRNA levels due to rates of transcription or mRNA stability are not sufficient to account for the large difference in the abundance of Rad51 protein . | [
"none"
] |
706 | 22705496_5 | Comparison of Rad51 half-lives between ES cells and MEFs also did not explain the elevated level of Rad51 protein in the ES cells . | [
"none"
] |
707 | 22705496_6 | A comparative assessment of the Rad51 translation level demonstrated that it is translated with much greater efficacy in ES cells than in MEFs . | [
"none"
] |
708 | 22705496_7 | To determine whether this high level of translation in ES cells is a general phenomenon in these cells or whether it is a characteristic of specific proteins , such as those involved with recombination and cell cycle progression , we compared mechanisms that regulate the level of Pcna in ES cells with those that regulate Rad51 . | [
"none"
] |
709 | 22705496_8 | The half-life of Pcna and its rate of synthesis were considerably different from those of Rad51 in ES cells , demonstrating that regulation of Rad51 abundance cannot be generalized to other ES cell proteins and not to proteins involved in DNA replication and cell cycle control . | [
"none"
] |
710 | 22705496_9 | Finally , we show that only a small proportion of the abundant Rad51 protein population is activated under basal conditions in ES cells and recruited to DNA DSBs and/or stalled replication forks . | [
"none"
] |
711 | 22891289_0 | MDSCs and Tregs play an essential role in the immunosuppressive networks that contribute to tumor-immune evasion . | [
"none"
] |
712 | 22891289_1 | The mechanisms by which tumors promote the expansion and/or function of these suppressive cells and the cross-talk between MDSC and Treg remain incompletely defined . | [
"none"
] |
713 | 22891289_2 | Previous reports have suggested that MDSC may contribute to Treg induction in cancer . | [
"none"
] |
714 | 22891289_3 | Herein , we provide evidence that tumor-induced gr-MDSCs , endowed with the potential of suppressing conventional T Lc , surprisingly impair TGF-β1-mediated generation of CD4(+)CD25(+)FoxP3(+) iTregs . | [
"sustaining proliferative signaling",
"avoiding immune destruction"
] |
715 | 22891289_4 | Furthermore , gr-MDSCs impede the proliferation of nTregs without , however , affecting FoxP3 expression . | [
"none"
] |
716 | 22891289_5 | Suppression of iTreg differentiation from na�ve CD4(+) cells by gr-MDSC occurs early in the polarization process , requires inhibition of early T cell activation , and depends on ROS and IDO but does not require arginase 1 , iNOS , NO , cystine/cysteine depletion , PD-1 and PD-L1 signaling , or COX-2 . | [
"none"
] |
717 | 22891289_6 | These findings thus indicate that gr-MDSCs from TB hosts have the unanticipated ability to restrict immunosuppressive Tregs . | [
"avoiding immune destruction"
] |
718 | 1582420_0 | Loss of telomeric DNA during cell proliferation may play a role in ageing and cancer . | [
"none"
] |
719 | 1582420_1 | Since telomeres permit complete replication of eukaryotic chromosomes and protect their ends from recombination , we have measured telomere length , telomerase activity and chromosome rearrangements in human cells before and after transformation with SV40 or Ad5 . | [
"none"
] |
720 | 1582420_2 | In all mortal populations , telomeres shortened by approximately 65 bp/generation during the lifespan of the cultures . | [
"none"
] |
721 | 1582420_3 | When transformed cells reached crisis , the length of the telomeric TTAGGG repeats was only approximately 1.5 kbp and many dicentric chromosomes were observed . | [
"none"
] |
722 | 1582420_4 | In immortal cells , telomere length and frequency of dicentric chromosomes stabilized after crisis . | [
"enabling replicative immortality"
] |
723 | 1582420_5 | Telomerase activity was not detectable in control or extended lifespan populations but was present in immortal populations . | [
"enabling replicative immortality"
] |
724 | 1582420_6 | These results suggest that chromosomes with short ( TTAGGG)n tracts are recombinogenic , critically shortened telomeres may be incompatible with cell proliferation and stabilization of telomere length by telomerase may be required for immortalization . | [
"enabling replicative immortality"
] |
725 | 20954073_0 | Ceramide induces cell cycle arrest and apoptotic cell death associated with increased levels of p27(kip1) . | [
"none"
] |
726 | 20954073_1 | The aim of this study was to examine the effects of ceramide on p27(kip1) protein levels as a measure of cell cycle arrest and apoptosis . | [
"none"
] |
727 | 20954073_2 | Results showed that ceramide increased p27(kip1) protein levels through activation of protein phosphatase 2A ( PP2A ) in PC-3 prostate cancer cells . | [
"sustaining proliferative signaling",
"evading growth suppressors"
] |
728 | 20954073_3 | Treatment of cells with the PP2A inhibitor okadaic acid or with PP2A-Cα siRNA inhibited ceramide-induced enhanced p27(kip1) protein expression and Akt dephosphorylation , and prevented Skp2 downregulation . | [
"sustaining proliferative signaling",
"evading growth suppressors"
] |
729 | 20954073_4 | Overexpression of constitutively active Akt attenuated ceramide-induced Skp2 downregulation and p27(kip1) upregulation . | [
"sustaining proliferative signaling",
"evading growth suppressors"
] |
730 | 20954073_5 | In addition , ceramide stimulated binding of the PP2A catalytic subunit PP2A-Cαβ to Akt as assessed by immunoprecipitation experiments , indicating that PP2A is involved in the induction of p27(kip1) via inhibition of Akt pathway . | [
"sustaining proliferative signaling",
"evading growth suppressors"
] |
731 | 20954073_6 | Finally , whether PP2A can regulate p27(kip1) expression independently of Akt pathway was determined . | [
"sustaining proliferative signaling",
"evading growth suppressors"
] |
732 | 20954073_7 | Knockdown of PP2A-Cα with siRNA reduced p27(kip1) levels in the presence of Akt inhibitor . | [
"evading growth suppressors"
] |
733 | 20954073_8 | These data reveal that PP2A is a regulator of ceramide-induced p27(kip1) expression via Akt-dependent and Akt-independent pathways . | [
"sustaining proliferative signaling",
"evading growth suppressors"
] |
734 | 20217555_0 | Tumor invasion and metastasis are the primary causes of cancer patient mortality , underscoring the need for identification of novel genes and signaling pathways that mediate these prognosis-determining phenomena . | [
"none"
] |
735 | 20217555_1 | To identify and characterize novel lung adenocarcinoma genes associated with lung cancer progression , we created a bioinformatics-based approach that focuses on human cell-cycle-regulated genes that have evolved only in higher organisms but not in lower eukaryotic cells . | [
"none"
] |
736 | 20217555_2 | In siRNA experiments in lung cancer cells , FLJ10540 was identified as one of several novel targets involved in cell migration and invasion . | [
"none"
] |
737 | 20217555_3 | Here , we demonstrate that PI3K inhibition affects FLJ10540-mediated cell migration and invasion and further , that FLJ10540 knockdown ablates AKT-Ser(473) phosphorylation . | [
"activating invasion and metastasis",
"sustaining proliferative signaling"
] |
738 | 20217555_4 | Taken together , these findings indicate that the FLJ10540/PI3K/AKT pathway may harbor new therapeutic targets for treating invasive lung adenocarcinoma . | [
"sustaining proliferative signaling"
] |
739 | 12554766_0 | Steroid hormone receptors , including estrogen receptor-alpha ( ERalpha ) , are ligand-activated transcription factors , and hormone binding leads to depletion of receptor levels via preteasome-mediated degradation . | [
"none"
] |
740 | 12554766_1 | NEDD8 ( neural precursor cell-expressed developmentally down-regulated ) is an ubiquitin-like protein essential for protein processing and cell cycle progression . | [
"none"
] |
741 | 12554766_2 | We recently demonstrated that ubiquitin-activating enzyme ( Uba)3 , the catalytic subunit of the NEDD8-activating enzyme , inhibits ERalpha transcriptional activity . | [
"none"
] |
742 | 12554766_3 | Here we report that Uba3-mediated inhibition of ERalpha transactivation function is due to increased receptor protein turnover . | [
"none"
] |
743 | 12554766_4 | Coexpression of Uba3 with ERalpha increased receptor degradation by the 26S proteasome . | [
"sustaining proliferative signaling"
] |
744 | 12554766_5 | Inhibition of NEDD8 activation and conjugation diminished polyubiquitination of ERalpha and blocked proteasome-mediated degradation of receptor protein . | [
"sustaining proliferative signaling"
] |
745 | 12554766_6 | The antiestrogen ICI 182,780 is known to induce ER degradation . | [
"none"
] |
746 | 12554766_7 | In human MCF7 breast cancer cells modified to contain a disrupted NEDD8 pathway , ICI 182,780 degradation of ERalpha was impaired , and the antiestrogen was ineffective at inhibiting cell proliferation . | [
"none"
] |
747 | 12554766_8 | This study provides the first evidence linking nuclear receptor degradation with the NEDD8 pathway and the ubiquitin-proteasome system , suggesting that the two pathways can act together to modulate ERalpha turnover and cellular responses to estrogens . | [
"sustaining proliferative signaling"
] |
748 | 12554766_9 | Based on our observation that an intact NEDD8 pathway is essential for the antiproliferation activity of the ICI 182,780 in ERalpha positive breast cancer cells , we propose that disruptions in the NEDD8 pathway provide a mechanism by which breast cancer cells acquire antiestrogen resistance while retaining expression of ERalpha . | [
"sustaining proliferative signaling"
] |
749 | 23263278_0 | The mechanisms by which tumour cells metastasize and the role that cell polarity proteins play in this process are not well understood . | [
"none"
] |
750 | 23263278_1 | We report that partitioning defective protein 3 ( Par3 ) is dysregulated in metastasis in human breast cancer , and is associated with a higher tumour grade and ErbB2-positive status . | [
"activating invasion and metastasis"
] |
751 | 23263278_2 | Downregulation of Par3 cooperated with ErbB2 to induce cell invasion and metastasis in vivo . | [
"activating invasion and metastasis"
] |
752 | 23263278_3 | Interestingly , the metastatic behaviour was not associated with an overt mesenchymal phenotype . | [
"activating invasion and metastasis"
] |
753 | 23263278_4 | However , loss of Par3 inhibited E-cadherin junction stability , disrupted membrane and actin dynamics at cell-cell junctions and decreased cell-cell cohesion in a manner dependent on the Tiam1/Rac-GTP pathway . | [
"none"
] |
754 | 23263278_5 | Inhibition of this pathway restored E-cadherin junction stability and blocked invasive behaviour of cells lacking Par3 , suggesting that loss of Par3 promotes metastatic behaviour of ErbB2-induced tumour epithelial cells by decreasing cell-cell cohesion . | [
"activating invasion and metastasis"
] |
755 | 24142698_0 | Pyruvate kinase M2 ( PKM2 ) is a key player in the Warburg effect of cancer cells . | [
"none"
] |
756 | 24142698_1 | However , the mechanisms of regulating PKM2 are not fully elucidated . | [
"none"
] |
757 | 24142698_2 | Here , we identified the protein-serine/threonine kinase PIM2 , a known oncogene , as a novel binding partner of PKM2 . | [
"none"
] |
758 | 24142698_3 | The interaction between PIM2 and PKM2 was confirmed by multiple biochemical approaches in vitro and in cultured cells . | [
"none"
] |
759 | 24142698_4 | Importantly , we found that PIM2 could directly phosphorylate PKM2 on the Thr-454 residue , resulting in an increase of PKM2 protein levels . | [
"none"
] |
760 | 24142698_5 | Compared with wild type , PKM2 with the phosphorylation-defective mutation displayed a reduced effect on glycolysis , co-activating HIF-1\u03b1 and \u03b2-catenin , and cell proliferation , while enhancing mitochondrial respiration of cancer cells . | [
"cellular energetics",
"genomic instability and mutation"
] |
761 | 24142698_6 | These findings demonstrate that PIM2-dependent phosphorylation of PKM2 is critical for regulating the Warburg effect in cancer , highlighting PIM2 as a potential therapeutic target . | [
"cellular energetics"
] |
762 | 22351035_0 | Approximately 50% of human tumors have a mutation in TP53 . | [
"none"
] |
763 | 22351035_1 | The pattern and spectra of TP53 mutations often differ between cancer types , perhaps due to different etiological factors . | [
"none"
] |
764 | 22351035_2 | The Hupki ( human TP53 knock-in ) mouse embryo fibroblast ( HUF ) immortalization assay is useful for studying mutagenesis in the human TP53 gene by environmental carcinogens . | [
"none"
] |
765 | 22351035_3 | Prior to initiating an immortalization assay , carcinogen treatment conditions must be optimized , which can require a large number of cells . | [
"none"
] |
766 | 22351035_4 | As primary HUF cultures senesce within 2 weeks , restricting their use , we investigated whether immortalized HUFs retaining wild-type TP53 can be surrogates for primary HUFs in initial treatment optimization . | [
"none"
] |
767 | 22351035_5 | DNA damage by eight compounds found in diesel exhaust , benzo[a]pyrene , 3-nitrobenzanthrone , 1-nitropyrene , 1,3-dinitropyrene , 1,6-dinitropyrene , 1,8-dinitropyrene , 6-nitrochrysene , and 3-nitrofluorene , was assessed by ( 32 ) P-postlabeling and the alkaline comet assay in primary HUFs and in an immortal HUF cell line J201 . | [
"none"
] |
768 | 22351035_6 | For most compounds , higher levels of DNA adducts accumulated in J201 cells than in primary HUFs . | [
"genomic instability and mutation"
] |
769 | 22351035_7 | This difference was not reflected in the comet assay or by cell viability changes . | [
"none"
] |
770 | 22351035_8 | Experiments in three additional immortal HUF cell lines ( AAI49 , U56 , and E2-143 ) confirmed strong differences in DNA adduct levels compared with primary HUFs . | [
"genomic instability and mutation"
] |
771 | 22351035_9 | However , these did not correlate with the protein expression of Nqo1 or Nat1/2 , or with gene expression of Cyp1a1 or Cyp1b1 . | [
"none"
] |
772 | 22351035_10 | Our results show that using immortal HUFs as surrogates for primary HUFs in genotoxicity screening has limitations and that DNA adduct formation is the best measure of genotoxicity of the nitro-polycyclic aromatic hydrocarbons tested in HUFs . | [
"genomic instability and mutation"
] |
773 | 21152038_0 | SWAP-70 , a phosphatidylinositol trisphosphate ( PtdIns(3,4,5)P(3) ) binding protein , has been suggested to be involved in transformation of mouse embryo fibroblasts ( MEFs ) as well as membrane ruffling after growth factor stimulation of the cells . | [
"none"
] |
774 | 21152038_1 | A mutant , SWAP-70-374 , was found to be able to bind to F-actin in vitro , whereas wild-type SWAP-70 failed to do so . | [
"none"
] |
775 | 21152038_2 | This mutant was present at the plasma membrane without any stimulation while the wild-type protein was present only in the cytosol unless cells were stimulated with EGF . | [
"none"
] |
776 | 21152038_3 | Expression of this mutant in MEFs resulted in morphologic transformation , fast growth , and loss of contact inhibition , suggesting that SWAP-70 with this mutation can transform the cells . | [
"evading growth suppressors"
] |
777 | 21152038_4 | ERK1/2 was activated in SWAP-70-374-transformed cells . | [
"none"
] |
778 | 21152038_5 | Use of MEK inhibitors revealed that the ERK1/2 pathway does not affect the cell growth of MEFs but is responsible for loss of contact inhibition . | [
"evading growth suppressors"
] |
779 | 21152038_6 | To investigate the function of SWAP-70 further , drugs that can inhibit SWAP-70-dependent cell responses were screened . | [
"none"
] |
780 | 21152038_7 | Among various drugs , sanguinarine was found to inhibit transformation of MEFs by SWAP-70-374 . | [
"none"
] |
781 | 21152038_8 | This drug was able to inhibit SWAP-70-mediated membrane ruffling as well , suggesting that its effect was closely related to the SWAP-70 signaling pathway . | [
"none"
] |
782 | 21152038_9 | These results suggest that SWAP-70-374 can activate some signaling pathways , including the ERK1/2 pathway , to transform MEFs . | [
"none"
] |
783 | 21178304_0 | Extensive biochemical and structural analyses have been performed on the putative DNA repair proteins of hyperthermophilic archaea , in contrast to the few genetic analyses of the genes encoding these proteins . | [
"none"
] |
784 | 21178304_1 | Accordingly , little is known about the repair pathways used by archaeal cells at high temperature . | [
"none"
] |
785 | 21178304_2 | Here , we attempted to disrupt the genes encoding the potential repair proteins in the genome of the hyperthermophilic archaeon Thermococcus kodakaraensis . | [
"none"
] |
786 | 21178304_3 | We succeeded in isolating null mutants of the hjc , hef , hjm , xpb , and xpd genes , but not the radA , rad50 , mre11 , herA , nurA , and xpg/fen1 genes . | [
"none"
] |
787 | 21178304_4 | Phenotypic analyses of the gene-disrupted strains showed that the xpb and xpd null mutants are only slightly sensitive to ultraviolet ( UV ) irradiation , methyl methanesulfonate ( MMS ) and mitomycin C ( MMC ) , as compared with the wild-type strain . | [
"none"
] |
788 | 21178304_5 | The hjm null mutant showed sensitivity specifically to mitomycin C. On the other hand , the null mutants of the hjc gene lacked increasing sensitivity to any type of DNA damage . | [
"none"
] |
789 | 21178304_6 | The Hef protein is particularly important for maintaining genome homeostasis , by functioning in the repair of a wide variety of DNA damage in T. kodakaraensis cells . | [
"genomic instability and mutation"
] |
790 | 21178304_7 | Deletion of the entire hef gene or of the segments encoding either its nuclease or helicase domain produced similar phenotypes . | [
"none"
] |
791 | 21178304_8 | The high sensitivity of the Δhef mutants to MMC suggests that Hef performs a critical function in the repair process of DNA interstrand cross-links . | [
"genomic instability and mutation"
] |
792 | 21178304_9 | These damage-sensitivity profiles suggest that the archaeal DNA repair system has processes depending on repair-related proteins different from those of eukaryotic and bacterial DNA repair systems using homologous repair proteins analyzed here . | [
"genomic instability and mutation"
] |
793 | 1491701_0 | PRL induces quiescent Nb2 rat T-lymphoma cells to undergo mitogenesis . | [
"none"
] |
794 | 1491701_1 | Upon PRL stimulation , the transcription factor interferon regulatory factor-1 ( IRF-1 ) is induced as a novel T-cell activation gene in Nb2 cells . | [
"none"
] |
795 | 1491701_2 | Surprisingly , IRF-1 is expressed twice during a single PRL-induced growth cycle : first during the early G1 phase , in an immediate transient peak from 15 min to 2 h , and second during the G1/S phase transition , in a broader peak beginning at 8 h . | [
"sustaining proliferative signaling"
] |
796 | 1491701_3 | The unusual biphasic expression of IRF-1 mRNA is accompanied both times by de novo IRF-1 protein synthesis . | [
"none"
] |
797 | 1491701_4 | However , the rate of IRF-1 protein turnover appears to be different in G1 and S phases . | [
"sustaining proliferative signaling"
] |
798 | 1491701_5 | IRF-1 protein expressed in G1 exhibits a half-life of about 25 min , whereas in the S phase , the half-life is about 60 min . | [
"sustaining proliferative signaling"
] |
799 | 1491701_6 | By washing out PRL at various times during G1 , we found a direct correlation among the length of PRL exposure , the second peak of IRF-1 mRNA expression , and DNA synthesis . | [
"none"
] |
800 | 1491701_7 | Our data suggest that PRL and one putative nuclear mediator , IRF-1 , may be important in two distinct phases of the cell cycle : first in cell cycle activation , and then in S phase progression . | [
"sustaining proliferative signaling"
] |