code
stringlengths 51
2.34k
| sequence
stringlengths 1.16k
13.1k
| docstring
stringlengths 11
171
|
|---|---|---|
def _add_auth(self):
if not self.auth:
return
if self.auth and not self.definition_body:
raise InvalidResourceException(self.logical_id,
"Auth works only with inline Swagger specified in "
"'DefinitionBody' property")
if not all(key in AuthProperties._fields for key in self.auth.keys()):
raise InvalidResourceException(
self.logical_id, "Invalid value for 'Auth' property")
if not SwaggerEditor.is_valid(self.definition_body):
raise InvalidResourceException(self.logical_id, "Unable to add Auth configuration because "
"'DefinitionBody' does not contain a valid Swagger")
swagger_editor = SwaggerEditor(self.definition_body)
auth_properties = AuthProperties(**self.auth)
authorizers = self._get_authorizers(auth_properties.Authorizers, auth_properties.DefaultAuthorizer)
if authorizers:
swagger_editor.add_authorizers(authorizers)
self._set_default_authorizer(swagger_editor, authorizers, auth_properties.DefaultAuthorizer)
self.definition_body = swagger_editor.swagger
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_add_auth'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '13', '33', '61', '82', '91', '101', '115', '136']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '11']}; {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'auth'}; {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': []}; {'id': '13', 'type': 'if_statement', 'children': ['14', '22']}; {'id': '14', 'type': 'boolean_operator', 'children': ['15', '18'], 'value': 'and'}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'auth'}; {'id': '18', 'type': 'not_operator', 'children': ['19']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'definition_body'}; {'id': '22', 'type': 'block', 'children': ['23']}; {'id': '23', 'type': 'raise_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'InvalidResourceException'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'logical_id'}; {'id': '30', 'type': 'concatenated_string', 'children': ['31', '32']}; {'id': '31', 'type': 'string', 'children': [], 'value': '"Auth works only with inline Swagger specified in "'}; {'id': '32', 'type': 'string', 'children': [], 'value': '"\'DefinitionBody\' property"'}; {'id': '33', 'type': 'if_statement', 'children': ['34', '52']}; {'id': '34', 'type': 'not_operator', 'children': ['35']}; {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'all'}; {'id': '37', 'type': 'generator_expression', 'children': ['38', '43']}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': 'in'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'AuthProperties'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': '_fields'}; {'id': '43', 'type': 'for_in_clause', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '45', 'type': 'call', 'children': ['46', '51']}; {'id': '46', 'type': 'attribute', 'children': ['47', '50']}; {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'auth'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '51', 'type': 'argument_list', 'children': []}; {'id': '52', 'type': 'block', 'children': ['53']}; {'id': '53', 'type': 'raise_statement', 'children': ['54']}; {'id': '54', 'type': 'call', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'InvalidResourceException'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'logical_id'}; {'id': '60', 'type': 'string', 'children': [], 'value': '"Invalid value for \'Auth\' property"'}; {'id': '61', 'type': 'if_statement', 'children': ['62', '71']}; {'id': '62', 'type': 'not_operator', 'children': ['63']}; {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'SwaggerEditor'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'is_valid'}; {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'definition_body'}; {'id': '71', 'type': 'block', 'children': ['72']}; {'id': '72', 'type': 'raise_statement', 'children': ['73']}; {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'InvalidResourceException'}; {'id': '75', 'type': 'argument_list', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'logical_id'}; {'id': '79', 'type': 'concatenated_string', 'children': ['80', '81']}; {'id': '80', 'type': 'string', 'children': [], 'value': '"Unable to add Auth configuration because "'}; {'id': '81', 'type': 'string', 'children': [], 'value': '"\'DefinitionBody\' does not contain a valid Swagger"'}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}; {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'swagger_editor'}; {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'SwaggerEditor'}; {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'definition_body'}; {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'auth_properties'}; {'id': '94', 'type': 'call', 'children': ['95', '96']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'AuthProperties'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}; {'id': '97', 'type': 'dictionary_splat', 'children': ['98']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'auth'}; {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'assignment', 'children': ['103', '104']}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'authorizers'}; {'id': '104', 'type': 'call', 'children': ['105', '108']}; {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '107', 'type': 'identifier', 'children': [], 'value': '_get_authorizers'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '112']}; {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'auth_properties'}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'Authorizers'}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}; {'id': '113', 'type': 'identifier', 'children': [], 'value': 'auth_properties'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'DefaultAuthorizer'}; {'id': '115', 'type': 'if_statement', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'authorizers'}; {'id': '117', 'type': 'block', 'children': ['118', '125']}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}; {'id': '119', 'type': 'call', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'swagger_editor'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'add_authorizers'}; {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'authorizers'}; {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'call', 'children': ['127', '130']}; {'id': '127', 'type': 'attribute', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '129', 'type': 'identifier', 'children': [], 'value': '_set_default_authorizer'}; {'id': '130', 'type': 'argument_list', 'children': ['131', '132', '133']}; {'id': '131', 'type': 'identifier', 'children': [], 'value': 'swagger_editor'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'authorizers'}; {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'auth_properties'}; {'id': '135', 'type': 'identifier', 'children': [], 'value': 'DefaultAuthorizer'}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}; {'id': '137', 'type': 'assignment', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}; {'id': '139', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'definition_body'}; {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'swagger_editor'}; {'id': '143', 'type': 'identifier', 'children': [], 'value': 'swagger'}
|
Add Auth configuration to the Swagger file, if necessary
|
def run(self):
context = zmq.Context()
socket = context.socket(zmq.PUB)
socket.setsockopt(zmq.LINGER, 100)
socket.bind('ipc://' + self.timer_sock)
count = 0
log.debug('ConCache-Timer started')
while not self.stopped.wait(1):
socket.send(self.serial.dumps(count))
count += 1
if count >= 60:
count = 0
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '14', '25', '35', '46', '50', '57']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'zmq'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'Context'}; {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'socket'}; {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'socket'}; {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'zmq'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'PUB'}; {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'socket'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'setsockopt'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '34']}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'zmq'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'LINGER'}; {'id': '34', 'type': 'integer', 'children': [], 'value': '100'}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'socket'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'bind'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}; {'id': '41', 'type': 'binary_operator', 'children': ['42', '43'], 'value': '+'}; {'id': '42', 'type': 'string', 'children': [], 'value': "'ipc://'"}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'timer_sock'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}; {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '49', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}; {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'string', 'children': [], 'value': "'ConCache-Timer started'"}; {'id': '57', 'type': 'while_statement', 'children': ['58', '67']}; {'id': '58', 'type': 'not_operator', 'children': ['59']}; {'id': '59', 'type': 'call', 'children': ['60', '65']}; {'id': '60', 'type': 'attribute', 'children': ['61', '64']}; {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'stopped'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'wait'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '67', 'type': 'block', 'children': ['68', '82', '86']}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}; {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'socket'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'send'}; {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '80']}; {'id': '75', 'type': 'attribute', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'serial'}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'dumps'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}; {'id': '83', 'type': 'augmented_assignment', 'children': ['84', '85'], 'value': '+='}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '85', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '86', 'type': 'if_statement', 'children': ['87', '90']}; {'id': '87', 'type': 'comparison_operator', 'children': ['88', '89'], 'value': '>='}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '89', 'type': 'integer', 'children': [], 'value': '60'}; {'id': '90', 'type': 'block', 'children': ['91']}; {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '94', 'type': 'integer', 'children': [], 'value': '0'}
|
main loop that fires the event every second
|
def load(file):
with open(file, 'r') as f:
contents = f.read()
lambder.load_events(contents)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'load'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '5', 'type': 'block', 'children': ['6', '26']}; {'id': '6', 'type': 'with_statement', 'children': ['7', '17']}; {'id': '7', 'type': 'with_clause', 'children': ['8']}; {'id': '8', 'type': 'with_item', 'children': ['9']}; {'id': '9', 'type': 'as_pattern', 'children': ['10', '15']}; {'id': '10', 'type': 'call', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '12', 'type': 'argument_list', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '14', 'type': 'string', 'children': [], 'value': "'r'"}; {'id': '15', 'type': 'as_pattern_target', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'contents'}; {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '25', 'type': 'argument_list', 'children': []}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'lambder'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'load_events'}; {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'contents'}
|
Load events from a json file
|
def push_to_server(self, data):
output = add_profile(self.customer.pk, data, data)
output['response'].raise_if_error()
self.profile_id = output['profile_id']
self.payment_profile_ids = output['payment_profile_ids']
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'push_to_server'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '6', 'type': 'block', 'children': ['7', '20', '28', '36']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'add_profile'}; {'id': '12', 'type': 'argument_list', 'children': ['13', '18', '19']}; {'id': '13', 'type': 'attribute', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'customer'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'pk'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'call', 'children': ['22', '27']}; {'id': '22', 'type': 'attribute', 'children': ['23', '26']}; {'id': '23', 'type': 'subscript', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '25', 'type': 'string', 'children': [], 'value': "'response'"}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'raise_if_error'}; {'id': '27', 'type': 'argument_list', 'children': []}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}; {'id': '29', 'type': 'assignment', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'profile_id'}; {'id': '33', 'type': 'subscript', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '35', 'type': 'string', 'children': [], 'value': "'profile_id'"}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}; {'id': '37', 'type': 'assignment', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'payment_profile_ids'}; {'id': '41', 'type': 'subscript', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '43', 'type': 'string', 'children': [], 'value': "'payment_profile_ids'"}
|
Create customer profile for given ``customer`` on Authorize.NET
|
def xml(self, value):
self._xml = value
self._root = s2t(value)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'xml'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '6', 'type': 'block', 'children': ['7', '13']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': '_xml'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '18']}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': '_root'}; {'id': '18', 'type': 'call', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 's2t'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'value'}
|
Set new XML string
|
def _process_json_resp_data(resp, no_custom_fields=False):
bridge_users = []
while True:
resp_data = json.loads(resp)
link_url = None
if "meta" in resp_data and\
"next" in resp_data["meta"]:
link_url = resp_data["meta"]["next"]
bridge_users = _process_apage(resp_data, bridge_users,
no_custom_fields)
if link_url is None:
break
resp = get_resource(link_url)
return bridge_users
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_process_json_resp_data'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'no_custom_fields'}; {'id': '7', 'type': 'False', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '13', '70']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'bridge_users'}; {'id': '12', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '13', 'type': 'while_statement', 'children': ['14', '15']}; {'id': '14', 'type': 'True', 'children': []}; {'id': '15', 'type': 'block', 'children': ['16', '25', '29', '48', '57', '63']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'resp_data'}; {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'loads'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'link_url'}; {'id': '28', 'type': 'None', 'children': []}; {'id': '29', 'type': 'if_statement', 'children': ['30', '39']}; {'id': '30', 'type': 'boolean_operator', 'children': ['31', '34'], 'value': 'and'}; {'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': 'in'}; {'id': '32', 'type': 'string', 'children': [], 'value': '"meta"'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'resp_data'}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': 'in'}; {'id': '35', 'type': 'string', 'children': [], 'value': '"next"'}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'resp_data'}; {'id': '38', 'type': 'string', 'children': [], 'value': '"meta"'}; {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}; {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'link_url'}; {'id': '43', 'type': 'subscript', 'children': ['44', '47']}; {'id': '44', 'type': 'subscript', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'resp_data'}; {'id': '46', 'type': 'string', 'children': [], 'value': '"meta"'}; {'id': '47', 'type': 'string', 'children': [], 'value': '"next"'}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}; {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'bridge_users'}; {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '_process_apage'}; {'id': '53', 'type': 'argument_list', 'children': ['54', '55', '56']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'resp_data'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'bridge_users'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'no_custom_fields'}; {'id': '57', 'type': 'if_statement', 'children': ['58', '61']}; {'id': '58', 'type': 'comparison_operator', 'children': ['59', '60'], 'value': 'is'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'link_url'}; {'id': '60', 'type': 'None', 'children': []}; {'id': '61', 'type': 'block', 'children': ['62']}; {'id': '62', 'type': 'break_statement', 'children': []}; {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '66', 'type': 'call', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'get_resource'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'link_url'}; {'id': '70', 'type': 'return_statement', 'children': ['71']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'bridge_users'}
|
process the response and return a list of BridgeUser
|
def project_data_source_path(cls, project, data_source):
return google.api_core.path_template.expand(
"projects/{project}/dataSources/{data_source}",
project=project,
data_source=data_source,
)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'project_data_source_path'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'project'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'data_source'}; {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'return_statement', 'children': ['9']}; {'id': '9', 'type': 'call', 'children': ['10', '17']}; {'id': '10', 'type': 'attribute', 'children': ['11', '16']}; {'id': '11', 'type': 'attribute', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'google'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'api_core'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'path_template'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'expand'}; {'id': '17', 'type': 'argument_list', 'children': ['18', '19', '22']}; {'id': '18', 'type': 'string', 'children': [], 'value': '"projects/{project}/dataSources/{data_source}"'}; {'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'project'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'project'}; {'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'data_source'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'data_source'}
|
Return a fully-qualified project_data_source string.
|
def revision_number(self):
revision = self.revision
if revision is None:
return 0
revision_str = revision.text
try:
revision = int(revision_str)
except ValueError:
revision = 0
if revision < 0:
revision = 0
return revision
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'revision_number'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '12', '19', '25', '41', '50']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'revision'}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'revision'}; {'id': '12', 'type': 'if_statement', 'children': ['13', '16']}; {'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': 'is'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'revision'}; {'id': '15', 'type': 'None', 'children': []}; {'id': '16', 'type': 'block', 'children': ['17']}; {'id': '17', 'type': 'return_statement', 'children': ['18']}; {'id': '18', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'revision_str'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'revision'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '25', 'type': 'try_statement', 'children': ['26', '34']}; {'id': '26', 'type': 'block', 'children': ['27']}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'revision'}; {'id': '30', 'type': 'call', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'revision_str'}; {'id': '34', 'type': 'except_clause', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '36', 'type': 'block', 'children': ['37']}; {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'revision'}; {'id': '40', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '41', 'type': 'if_statement', 'children': ['42', '45']}; {'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': '<'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'revision'}; {'id': '44', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}; {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'revision'}; {'id': '49', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '50', 'type': 'return_statement', 'children': ['51']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'revision'}
|
Integer value of revision property.
|
def _nodedev_event_update_cb(conn, dev, opaque):
_salt_send_event(opaque, conn, {
'nodedev': {
'name': dev.name()
},
'event': opaque['event']
})
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_nodedev_event_update_cb'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'conn'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'dev'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'opaque'}; {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': '_salt_send_event'}; {'id': '11', 'type': 'argument_list', 'children': ['12', '13', '14']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'opaque'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'conn'}; {'id': '14', 'type': 'dictionary', 'children': ['15', '25']}; {'id': '15', 'type': 'pair', 'children': ['16', '17']}; {'id': '16', 'type': 'string', 'children': [], 'value': "'nodedev'"}; {'id': '17', 'type': 'dictionary', 'children': ['18']}; {'id': '18', 'type': 'pair', 'children': ['19', '20']}; {'id': '19', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '20', 'type': 'call', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'dev'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '24', 'type': 'argument_list', 'children': []}; {'id': '25', 'type': 'pair', 'children': ['26', '27']}; {'id': '26', 'type': 'string', 'children': [], 'value': "'event'"}; {'id': '27', 'type': 'subscript', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'opaque'}; {'id': '29', 'type': 'string', 'children': [], 'value': "'event'"}
|
Node device update events handler
|
def name(self):
if self.chosen_name:
return self.chosen_name
else:
name = self.process.get_name()
if name:
return os.path.basename(name)
return ''
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'name'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '39']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '10', '15']}; {'id': '7', 'type': 'attribute', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'chosen_name'}; {'id': '10', 'type': 'block', 'children': ['11']}; {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'chosen_name'}; {'id': '15', 'type': 'else_clause', 'children': ['16']}; {'id': '16', 'type': 'block', 'children': ['17', '27']}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '20', 'type': 'call', 'children': ['21', '26']}; {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'process'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'get_name'}; {'id': '26', 'type': 'argument_list', 'children': []}; {'id': '27', 'type': 'if_statement', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'return_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '39', 'type': 'return_statement', 'children': ['40']}; {'id': '40', 'type': 'string', 'children': [], 'value': "''"}
|
The name for the window as displayed in the title bar and status bar.
|
def listener(self):
channels = ['ql:w:' + self.client.worker_name]
listener = Listener(self.client.redis, channels)
thread = threading.Thread(target=self.listen, args=(listener,))
thread.start()
try:
yield
finally:
listener.unlisten()
thread.join()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'listener'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '17', '29', '46', '52']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'channels'}; {'id': '9', 'type': 'list', 'children': ['10'], 'value': "['ql:w:' + self.client.worker_name]"}; {'id': '10', 'type': 'binary_operator', 'children': ['11', '12'], 'value': '+'}; {'id': '11', 'type': 'string', 'children': [], 'value': "'ql:w:'"}; {'id': '12', 'type': 'attribute', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'worker_name'}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'listener'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'Listener'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '28']}; {'id': '23', 'type': 'attribute', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'redis'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'channels'}; {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'thread'}; {'id': '32', 'type': 'call', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'threading'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'Thread'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '42']}; {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'listen'}; {'id': '42', 'type': 'keyword_argument', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '44', 'type': 'tuple', 'children': ['45']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'listener'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}; {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'thread'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '51', 'type': 'argument_list', 'children': []}; {'id': '52', 'type': 'try_statement', 'children': ['53', '56']}; {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}; {'id': '55', 'type': 'yield', 'children': []}; {'id': '56', 'type': 'finally_clause', 'children': ['57']}; {'id': '57', 'type': 'block', 'children': ['58', '64']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}; {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'listener'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'unlisten'}; {'id': '63', 'type': 'argument_list', 'children': []}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}; {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'thread'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '69', 'type': 'argument_list', 'children': []}
|
Listen for pubsub messages relevant to this worker in a thread
|
def _findLocation(self, reference_name, start, end):
try:
return self._locationMap['hg19'][reference_name][start][end]
except:
return None
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_findLocation'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'reference_name'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '8', 'type': 'block', 'children': ['9']}; {'id': '9', 'type': 'try_statement', 'children': ['10', '23']}; {'id': '10', 'type': 'block', 'children': ['11']}; {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'subscript', 'children': ['13', '22']}; {'id': '13', 'type': 'subscript', 'children': ['14', '21']}; {'id': '14', 'type': 'subscript', 'children': ['15', '20']}; {'id': '15', 'type': 'subscript', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_locationMap'}; {'id': '19', 'type': 'string', 'children': [], 'value': "'hg19'"}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'reference_name'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '23', 'type': 'except_clause', 'children': ['24']}; {'id': '24', 'type': 'block', 'children': ['25']}; {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'None', 'children': []}
|
return a location key form the locationMap
|
def figure_buffer(figs):
assert len(figs) > 0, 'No figure buffers given. Forgot to return from draw call?'
buffers = []
w, h = figs[0].canvas.get_width_height()
for f in figs:
wf, hf = f.canvas.get_width_height()
assert wf == w and hf == h, 'All canvas objects need to have same size'
buffers.append(np.fromstring(f.canvas.tostring_rgb(), dtype=np.uint8).reshape(h, w, 3))
return np.stack(buffers)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'figure_buffer'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'figs'}; {'id': '5', 'type': 'block', 'children': ['6', '14', '18', '32', '87']}; {'id': '6', 'type': 'assert_statement', 'children': ['7', '13']}; {'id': '7', 'type': 'comparison_operator', 'children': ['8', '12'], 'value': '>'}; {'id': '8', 'type': 'call', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '10', 'type': 'argument_list', 'children': ['11']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'figs'}; {'id': '12', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '13', 'type': 'string', 'children': [], 'value': "'No figure buffers given. Forgot to return from draw call?'"}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'buffers'}; {'id': '17', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '23']}; {'id': '20', 'type': 'pattern_list', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'h'}; {'id': '23', 'type': 'call', 'children': ['24', '31']}; {'id': '24', 'type': 'attribute', 'children': ['25', '30']}; {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'subscript', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'figs'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'canvas'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'get_width_height'}; {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'for_statement', 'children': ['33', '34', '35']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'figs'}; {'id': '35', 'type': 'block', 'children': ['36', '48', '57']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}; {'id': '37', 'type': 'assignment', 'children': ['38', '41']}; {'id': '38', 'type': 'pattern_list', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'wf'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'hf'}; {'id': '41', 'type': 'call', 'children': ['42', '47']}; {'id': '42', 'type': 'attribute', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'canvas'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'get_width_height'}; {'id': '47', 'type': 'argument_list', 'children': []}; {'id': '48', 'type': 'assert_statement', 'children': ['49', '56']}; {'id': '49', 'type': 'boolean_operator', 'children': ['50', '53'], 'value': 'and'}; {'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': '=='}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'wf'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '53', 'type': 'comparison_operator', 'children': ['54', '55'], 'value': '=='}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'hf'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'h'}; {'id': '56', 'type': 'string', 'children': [], 'value': "'All canvas objects need to have same size'"}; {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '62']}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'buffers'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}; {'id': '63', 'type': 'call', 'children': ['64', '83']}; {'id': '64', 'type': 'attribute', 'children': ['65', '82']}; {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'fromstring'}; {'id': '69', 'type': 'argument_list', 'children': ['70', '77']}; {'id': '70', 'type': 'call', 'children': ['71', '76']}; {'id': '71', 'type': 'attribute', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'canvas'}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'tostring_rgb'}; {'id': '76', 'type': 'argument_list', 'children': []}; {'id': '77', 'type': 'keyword_argument', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'dtype'}; {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'uint8'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'reshape'}; {'id': '83', 'type': 'argument_list', 'children': ['84', '85', '86']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'h'}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '86', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '87', 'type': 'return_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}; {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'stack'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'buffers'}
|
Extract raw image buffer from matplotlib figure shaped as 1xHxWx3.
|
def stdout_display():
if sys.version_info[0] == 2:
yield SmartBuffer(sys.stdout)
else:
yield SmartBuffer(sys.stdout.buffer)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'stdout_display'}; {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5']}; {'id': '5', 'type': 'if_statement', 'children': ['6', '13', '22']}; {'id': '6', 'type': 'comparison_operator', 'children': ['7', '12'], 'value': '=='}; {'id': '7', 'type': 'subscript', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'version_info'}; {'id': '11', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '12', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'yield', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'SmartBuffer'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '22', 'type': 'else_clause', 'children': ['23']}; {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}; {'id': '25', 'type': 'yield', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'SmartBuffer'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}; {'id': '29', 'type': 'attribute', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'buffer'}
|
Print results straight to stdout
|
def item(self):
url = self._contentURL
return Item(url=self._contentURL,
securityHandler=self._securityHandler,
proxy_url=self._proxy_url,
proxy_port=self._proxy_port,
initalize=True)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'item'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '12']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': '_contentURL'}; {'id': '12', 'type': 'return_statement', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'Item'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '21', '26', '31', '36']}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': '_contentURL'}; {'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'securityHandler'}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': '_securityHandler'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'proxy_url'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_proxy_url'}; {'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'proxy_port'}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': '_proxy_port'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'initalize'}; {'id': '38', 'type': 'True', 'children': []}
|
returns the Item class of an Item
|
def run_has_samplesheet(fc_dir, config, require_single=True):
fc_name, _ = flowcell.parse_dirname(fc_dir)
sheet_dirs = config.get("samplesheet_directories", [])
fcid_sheet = {}
for ss_dir in (s for s in sheet_dirs if os.path.exists(s)):
with utils.chdir(ss_dir):
for ss in glob.glob("*.csv"):
fc_ids = _get_flowcell_id(ss, require_single)
for fcid in fc_ids:
if fcid:
fcid_sheet[fcid] = os.path.join(ss_dir, ss)
potential_fcids = difflib.get_close_matches(fc_name, fcid_sheet.keys(), 1, 0.85)
if len(potential_fcids) > 0 and potential_fcids[0] in fcid_sheet:
return fcid_sheet[potential_fcids[0]]
else:
return None
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run_has_samplesheet'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'fc_dir'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'require_single'}; {'id': '8', 'type': 'True', 'children': []}; {'id': '9', 'type': 'block', 'children': ['10', '21', '31', '35', '100', '116']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '15']}; {'id': '12', 'type': 'pattern_list', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'fc_name'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'flowcell'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'parse_dirname'}; {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'fc_dir'}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'sheet_dirs'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '30']}; {'id': '29', 'type': 'string', 'children': [], 'value': '"samplesheet_directories"'}; {'id': '30', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'fcid_sheet'}; {'id': '34', 'type': 'dictionary', 'children': []}; {'id': '35', 'type': 'for_statement', 'children': ['36', '37', '51']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'ss_dir'}; {'id': '37', 'type': 'generator_expression', 'children': ['38', '39', '42']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '39', 'type': 'for_in_clause', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'sheet_dirs'}; {'id': '42', 'type': 'if_clause', 'children': ['43']}; {'id': '43', 'type': 'call', 'children': ['44', '49']}; {'id': '44', 'type': 'attribute', 'children': ['45', '48']}; {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'with_statement', 'children': ['53', '61']}; {'id': '53', 'type': 'with_clause', 'children': ['54']}; {'id': '54', 'type': 'with_item', 'children': ['55']}; {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'chdir'}; {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'ss_dir'}; {'id': '61', 'type': 'block', 'children': ['62']}; {'id': '62', 'type': 'for_statement', 'children': ['63', '64', '70']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'ss'}; {'id': '64', 'type': 'call', 'children': ['65', '68']}; {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'glob'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'glob'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}; {'id': '69', 'type': 'string', 'children': [], 'value': '"*.csv"'}; {'id': '70', 'type': 'block', 'children': ['71', '79']}; {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'fc_ids'}; {'id': '74', 'type': 'call', 'children': ['75', '76']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': '_get_flowcell_id'}; {'id': '76', 'type': 'argument_list', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'ss'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'require_single'}; {'id': '79', 'type': 'for_statement', 'children': ['80', '81', '82']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'fcid'}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'fc_ids'}; {'id': '82', 'type': 'block', 'children': ['83']}; {'id': '83', 'type': 'if_statement', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'fcid'}; {'id': '85', 'type': 'block', 'children': ['86']}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}; {'id': '87', 'type': 'assignment', 'children': ['88', '91']}; {'id': '88', 'type': 'subscript', 'children': ['89', '90']}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'fcid_sheet'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'fcid'}; {'id': '91', 'type': 'call', 'children': ['92', '97']}; {'id': '92', 'type': 'attribute', 'children': ['93', '96']}; {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '97', 'type': 'argument_list', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'ss_dir'}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'ss'}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}; {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'potential_fcids'}; {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 'difflib'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'get_close_matches'}; {'id': '107', 'type': 'argument_list', 'children': ['108', '109', '114', '115']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'fc_name'}; {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'fcid_sheet'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '113', 'type': 'argument_list', 'children': []}; {'id': '114', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '115', 'type': 'float', 'children': [], 'value': '0.85'}; {'id': '116', 'type': 'if_statement', 'children': ['117', '129', '136']}; {'id': '117', 'type': 'boolean_operator', 'children': ['118', '124'], 'value': 'and'}; {'id': '118', 'type': 'comparison_operator', 'children': ['119', '123'], 'value': '>'}; {'id': '119', 'type': 'call', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'potential_fcids'}; {'id': '123', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '124', 'type': 'comparison_operator', 'children': ['125', '128'], 'value': 'in'}; {'id': '125', 'type': 'subscript', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'potential_fcids'}; {'id': '127', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'fcid_sheet'}; {'id': '129', 'type': 'block', 'children': ['130']}; {'id': '130', 'type': 'return_statement', 'children': ['131']}; {'id': '131', 'type': 'subscript', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'fcid_sheet'}; {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'potential_fcids'}; {'id': '135', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '136', 'type': 'else_clause', 'children': ['137']}; {'id': '137', 'type': 'block', 'children': ['138']}; {'id': '138', 'type': 'return_statement', 'children': ['139']}; {'id': '139', 'type': 'None', 'children': []}
|
Checks if there's a suitable SampleSheet.csv present for the run
|
def read(self):
resp = self.sqs_client.receive_message(
QueueUrl=self.queue_url,
MaxNumberOfMessages=1,
AttributeNames=('SentTimestamp',),
WaitTimeSeconds=self.recv_wait_time_seconds,
)
if resp['ResponseMetadata']['HTTPStatusCode'] != 200:
raise Exception('Invalid status code from sqs: %s' %
resp['ResponseMetadata']['HTTPStatusCode'])
msgs = resp.get('Messages')
if not msgs:
return None
assert len(msgs) == 1
msg = msgs[0]
payload = msg['Body']
handle = msg['ReceiptHandle']
timestamp = msg['Attributes']['SentTimestamp']
metadata = dict(timestamp=timestamp)
msg_handle = MessageHandle(handle, payload, metadata)
return msg_handle
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'read'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '33', '53', '62', '68', '75', '81', '87', '93', '101', '110', '119']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '9', 'type': 'call', 'children': ['10', '15']}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'sqs_client'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'receive_message'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '21', '24', '28']}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'QueueUrl'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'queue_url'}; {'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'MaxNumberOfMessages'}; {'id': '23', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'AttributeNames'}; {'id': '26', 'type': 'tuple', 'children': ['27']}; {'id': '27', 'type': 'string', 'children': [], 'value': "'SentTimestamp'"}; {'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'WaitTimeSeconds'}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'recv_wait_time_seconds'}; {'id': '33', 'type': 'if_statement', 'children': ['34', '41']}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '40'], 'value': '!='}; {'id': '35', 'type': 'subscript', 'children': ['36', '39']}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '38', 'type': 'string', 'children': [], 'value': "'ResponseMetadata'"}; {'id': '39', 'type': 'string', 'children': [], 'value': "'HTTPStatusCode'"}; {'id': '40', 'type': 'integer', 'children': [], 'value': '200'}; {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'raise_statement', 'children': ['43']}; {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'binary_operator', 'children': ['47', '48'], 'value': '%'}; {'id': '47', 'type': 'string', 'children': [], 'value': "'Invalid status code from sqs: %s'"}; {'id': '48', 'type': 'subscript', 'children': ['49', '52']}; {'id': '49', 'type': 'subscript', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '51', 'type': 'string', 'children': [], 'value': "'ResponseMetadata'"}; {'id': '52', 'type': 'string', 'children': [], 'value': "'HTTPStatusCode'"}; {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'msgs'}; {'id': '56', 'type': 'call', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}; {'id': '61', 'type': 'string', 'children': [], 'value': "'Messages'"}; {'id': '62', 'type': 'if_statement', 'children': ['63', '65']}; {'id': '63', 'type': 'not_operator', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'msgs'}; {'id': '65', 'type': 'block', 'children': ['66']}; {'id': '66', 'type': 'return_statement', 'children': ['67']}; {'id': '67', 'type': 'None', 'children': []}; {'id': '68', 'type': 'assert_statement', 'children': ['69']}; {'id': '69', 'type': 'comparison_operator', 'children': ['70', '74'], 'value': '=='}; {'id': '70', 'type': 'call', 'children': ['71', '72']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'msgs'}; {'id': '74', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'assignment', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '78', 'type': 'subscript', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'msgs'}; {'id': '80', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '84']}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'payload'}; {'id': '84', 'type': 'subscript', 'children': ['85', '86']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '86', 'type': 'string', 'children': [], 'value': "'Body'"}; {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'handle'}; {'id': '90', 'type': 'subscript', 'children': ['91', '92']}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '92', 'type': 'string', 'children': [], 'value': "'ReceiptHandle'"}; {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'timestamp'}; {'id': '96', 'type': 'subscript', 'children': ['97', '100']}; {'id': '97', 'type': 'subscript', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '99', 'type': 'string', 'children': [], 'value': "'Attributes'"}; {'id': '100', 'type': 'string', 'children': [], 'value': "'SentTimestamp'"}; {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'assignment', 'children': ['103', '104']}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '104', 'type': 'call', 'children': ['105', '106']}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}; {'id': '107', 'type': 'keyword_argument', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'timestamp'}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'timestamp'}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}; {'id': '111', 'type': 'assignment', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'msg_handle'}; {'id': '113', 'type': 'call', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'MessageHandle'}; {'id': '115', 'type': 'argument_list', 'children': ['116', '117', '118']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'handle'}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'payload'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '119', 'type': 'return_statement', 'children': ['120']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'msg_handle'}
|
read a single message from the queue
|
def remove_nopairs(in_bam, out_dir, config):
runner = broad.runner_from_config(config)
out_bam = os.path.join(out_dir, "{}-safepair{}".format(*os.path.splitext(os.path.basename(in_bam))))
if not utils.file_exists(out_bam):
read_counts = collections.defaultdict(int)
with pysam.Samfile(in_bam, "rb") as in_pysam:
for read in in_pysam:
if read.is_paired:
read_counts[read.qname] += 1
with pysam.Samfile(in_bam, "rb") as in_pysam:
with file_transaction(out_bam) as tx_out_bam:
with pysam.Samfile(tx_out_bam, "wb", template=in_pysam) as out_pysam:
for read in in_pysam:
if read_counts[read.qname] == 2:
out_pysam.write(read)
return runner.run_fn("picard_sort", out_bam, "queryname")
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove_nopairs'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'in_bam'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'out_dir'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '7', 'type': 'block', 'children': ['8', '17', '49', '160']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'runner'}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'broad'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'runner_from_config'}; {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'out_bam'}; {'id': '20', 'type': 'call', 'children': ['21', '26']}; {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'out_dir'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': '"{}-safepair{}"'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}; {'id': '33', 'type': 'list_splat', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '40']}; {'id': '35', 'type': 'attribute', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'splitext'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}; {'id': '41', 'type': 'call', 'children': ['42', '47']}; {'id': '42', 'type': 'attribute', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'in_bam'}; {'id': '49', 'type': 'if_statement', 'children': ['50', '57']}; {'id': '50', 'type': 'not_operator', 'children': ['51']}; {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'file_exists'}; {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'out_bam'}; {'id': '57', 'type': 'block', 'children': ['58', '67', '98']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}; {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'read_counts'}; {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'collections'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '67', 'type': 'with_statement', 'children': ['68', '80']}; {'id': '68', 'type': 'with_clause', 'children': ['69']}; {'id': '69', 'type': 'with_item', 'children': ['70']}; {'id': '70', 'type': 'as_pattern', 'children': ['71', '78']}; {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'pysam'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'Samfile'}; {'id': '75', 'type': 'argument_list', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'in_bam'}; {'id': '77', 'type': 'string', 'children': [], 'value': '"rb"'}; {'id': '78', 'type': 'as_pattern_target', 'children': ['79']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'in_pysam'}; {'id': '80', 'type': 'block', 'children': ['81']}; {'id': '81', 'type': 'for_statement', 'children': ['82', '83', '84']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'in_pysam'}; {'id': '84', 'type': 'block', 'children': ['85']}; {'id': '85', 'type': 'if_statement', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'is_paired'}; {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}; {'id': '91', 'type': 'augmented_assignment', 'children': ['92', '97'], 'value': '+='}; {'id': '92', 'type': 'subscript', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'read_counts'}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'qname'}; {'id': '97', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '98', 'type': 'with_statement', 'children': ['99', '111']}; {'id': '99', 'type': 'with_clause', 'children': ['100']}; {'id': '100', 'type': 'with_item', 'children': ['101']}; {'id': '101', 'type': 'as_pattern', 'children': ['102', '109']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}; {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'pysam'}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 'Samfile'}; {'id': '106', 'type': 'argument_list', 'children': ['107', '108']}; {'id': '107', 'type': 'identifier', 'children': [], 'value': 'in_bam'}; {'id': '108', 'type': 'string', 'children': [], 'value': '"rb"'}; {'id': '109', 'type': 'as_pattern_target', 'children': ['110']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'in_pysam'}; {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'with_statement', 'children': ['113', '122']}; {'id': '113', 'type': 'with_clause', 'children': ['114']}; {'id': '114', 'type': 'with_item', 'children': ['115']}; {'id': '115', 'type': 'as_pattern', 'children': ['116', '120']}; {'id': '116', 'type': 'call', 'children': ['117', '118']}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'file_transaction'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}; {'id': '119', 'type': 'identifier', 'children': [], 'value': 'out_bam'}; {'id': '120', 'type': 'as_pattern_target', 'children': ['121']}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'tx_out_bam'}; {'id': '122', 'type': 'block', 'children': ['123']}; {'id': '123', 'type': 'with_statement', 'children': ['124', '139']}; {'id': '124', 'type': 'with_clause', 'children': ['125']}; {'id': '125', 'type': 'with_item', 'children': ['126']}; {'id': '126', 'type': 'as_pattern', 'children': ['127', '137']}; {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}; {'id': '129', 'type': 'identifier', 'children': [], 'value': 'pysam'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'Samfile'}; {'id': '131', 'type': 'argument_list', 'children': ['132', '133', '134']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'tx_out_bam'}; {'id': '133', 'type': 'string', 'children': [], 'value': '"wb"'}; {'id': '134', 'type': 'keyword_argument', 'children': ['135', '136']}; {'id': '135', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'in_pysam'}; {'id': '137', 'type': 'as_pattern_target', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'out_pysam'}; {'id': '139', 'type': 'block', 'children': ['140']}; {'id': '140', 'type': 'for_statement', 'children': ['141', '142', '143']}; {'id': '141', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'in_pysam'}; {'id': '143', 'type': 'block', 'children': ['144']}; {'id': '144', 'type': 'if_statement', 'children': ['145', '152']}; {'id': '145', 'type': 'comparison_operator', 'children': ['146', '151'], 'value': '=='}; {'id': '146', 'type': 'subscript', 'children': ['147', '148']}; {'id': '147', 'type': 'identifier', 'children': [], 'value': 'read_counts'}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}; {'id': '149', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'qname'}; {'id': '151', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '152', 'type': 'block', 'children': ['153']}; {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'call', 'children': ['155', '158']}; {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'out_pysam'}; {'id': '157', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}; {'id': '159', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '160', 'type': 'return_statement', 'children': ['161']}; {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}; {'id': '163', 'type': 'identifier', 'children': [], 'value': 'runner'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'run_fn'}; {'id': '165', 'type': 'argument_list', 'children': ['166', '167', '168']}; {'id': '166', 'type': 'string', 'children': [], 'value': '"picard_sort"'}; {'id': '167', 'type': 'identifier', 'children': [], 'value': 'out_bam'}; {'id': '168', 'type': 'string', 'children': [], 'value': '"queryname"'}
|
Remove any reads without both pairs present in the file.
|
def captures_directory(self):
path = os.path.join(self._path, "project-files", "captures")
os.makedirs(path, exist_ok=True)
return path
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'captures_directory'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '21', '31']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '9', 'type': 'call', 'children': ['10', '15']}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '19', '20']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_path'}; {'id': '19', 'type': 'string', 'children': [], 'value': '"project-files"'}; {'id': '20', 'type': 'string', 'children': [], 'value': '"captures"'}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '26']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'makedirs'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'exist_ok'}; {'id': '30', 'type': 'True', 'children': []}; {'id': '31', 'type': 'return_statement', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'path'}
|
Location of the captures files
|
def make_sudo_cmd(sudo_user, executable, cmd):
randbits = ''.join(chr(random.randint(ord('a'), ord('z'))) for x in xrange(32))
prompt = '[sudo via ansible, key=%s] password: ' % randbits
sudocmd = '%s -k && %s %s -S -p "%s" -u %s %s -c %s' % (
C.DEFAULT_SUDO_EXE, C.DEFAULT_SUDO_EXE, C.DEFAULT_SUDO_FLAGS,
prompt, sudo_user, executable or '$SHELL', pipes.quote(cmd))
return ('/bin/sh -c ' + pipes.quote(sudocmd), prompt)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'make_sudo_cmd'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sudo_user'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'executable'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '7', 'type': 'block', 'children': ['8', '38', '44', '70']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'randbits'}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'string', 'children': [], 'value': "''"}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '15', 'type': 'generator_expression', 'children': ['16', '32']}; {'id': '16', 'type': 'call', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'chr'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}; {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'randint'}; {'id': '23', 'type': 'argument_list', 'children': ['24', '28']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ord'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}; {'id': '27', 'type': 'string', 'children': [], 'value': "'a'"}; {'id': '28', 'type': 'call', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ord'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}; {'id': '31', 'type': 'string', 'children': [], 'value': "'z'"}; {'id': '32', 'type': 'for_in_clause', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '34', 'type': 'call', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'xrange'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'integer', 'children': [], 'value': '32'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}; {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'prompt'}; {'id': '41', 'type': 'binary_operator', 'children': ['42', '43'], 'value': '%'}; {'id': '42', 'type': 'string', 'children': [], 'value': "'[sudo via ansible, key=%s] password: '"}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'randbits'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}; {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'sudocmd'}; {'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '%'}; {'id': '48', 'type': 'string', 'children': [], 'value': '\'%s -k && %s %s -S -p "%s" -u %s %s -c %s\''}; {'id': '49', 'type': 'tuple', 'children': ['50', '53', '56', '59', '60', '61', '64']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_SUDO_EXE'}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_SUDO_EXE'}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_SUDO_FLAGS'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'prompt'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'sudo_user'}; {'id': '61', 'type': 'boolean_operator', 'children': ['62', '63'], 'value': 'or'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'executable'}; {'id': '63', 'type': 'string', 'children': [], 'value': "'$SHELL'"}; {'id': '64', 'type': 'call', 'children': ['65', '68']}; {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'pipes'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'quote'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '70', 'type': 'return_statement', 'children': ['71']}; {'id': '71', 'type': 'tuple', 'children': ['72', '80']}; {'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '+'}; {'id': '73', 'type': 'string', 'children': [], 'value': "'/bin/sh -c '"}; {'id': '74', 'type': 'call', 'children': ['75', '78']}; {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'pipes'}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'quote'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'sudocmd'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'prompt'}
|
helper function for connection plugins to create sudo commands
|
def tseitin(self, auxvarname='aux'):
if self.is_cnf():
return self
_, constraints = _tseitin(self.to_nnf(), auxvarname)
fst = constraints[-1][1]
rst = [Equal(v, ex).to_cnf() for v, ex in constraints[:-1]]
return And(fst, *rst)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'tseitin'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'auxvarname'}; {'id': '7', 'type': 'string', 'children': [], 'value': "'aux'"}; {'id': '8', 'type': 'block', 'children': ['9', '18', '32', '41', '64']}; {'id': '9', 'type': 'if_statement', 'children': ['10', '15']}; {'id': '10', 'type': 'call', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'is_cnf'}; {'id': '14', 'type': 'argument_list', 'children': []}; {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '23']}; {'id': '20', 'type': 'pattern_list', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'constraints'}; {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_tseitin'}; {'id': '25', 'type': 'argument_list', 'children': ['26', '31']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'to_nnf'}; {'id': '30', 'type': 'argument_list', 'children': []}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'auxvarname'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}; {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'fst'}; {'id': '35', 'type': 'subscript', 'children': ['36', '40']}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'constraints'}; {'id': '38', 'type': 'unary_operator', 'children': ['39'], 'value': '-'}; {'id': '39', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '40', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'rst'}; {'id': '44', 'type': 'list_comprehension', 'children': ['45', '54']}; {'id': '45', 'type': 'call', 'children': ['46', '53']}; {'id': '46', 'type': 'attribute', 'children': ['47', '52']}; {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'Equal'}; {'id': '49', 'type': 'argument_list', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'ex'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'to_cnf'}; {'id': '53', 'type': 'argument_list', 'children': []}; {'id': '54', 'type': 'for_in_clause', 'children': ['55', '58']}; {'id': '55', 'type': 'pattern_list', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'ex'}; {'id': '58', 'type': 'subscript', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'constraints'}; {'id': '60', 'type': 'slice', 'children': ['61', '62']}; {'id': '61', 'type': 'colon', 'children': []}; {'id': '62', 'type': 'unary_operator', 'children': ['63'], 'value': '-'}; {'id': '63', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '64', 'type': 'return_statement', 'children': ['65']}; {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'And'}; {'id': '67', 'type': 'argument_list', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'fst'}; {'id': '69', 'type': 'list_splat', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'rst'}
|
Convert the expression to Tseitin's encoding.
|
def accel_move_tab_right(self, *args):
pos = self.get_notebook().get_current_page()
if pos != self.get_notebook().get_n_pages() - 1:
self.move_tab(pos, pos + 1)
return True
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'accel_move_tab_right'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'list_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '7', 'type': 'block', 'children': ['8', '20', '45']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '11', 'type': 'call', 'children': ['12', '19']}; {'id': '12', 'type': 'attribute', 'children': ['13', '18']}; {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'get_notebook'}; {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'get_current_page'}; {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'if_statement', 'children': ['21', '34']}; {'id': '21', 'type': 'comparison_operator', 'children': ['22', '23'], 'value': '!='}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '23', 'type': 'binary_operator', 'children': ['24', '33'], 'value': '-'}; {'id': '24', 'type': 'call', 'children': ['25', '32']}; {'id': '25', 'type': 'attribute', 'children': ['26', '31']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'get_notebook'}; {'id': '30', 'type': 'argument_list', 'children': []}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'get_n_pages'}; {'id': '32', 'type': 'argument_list', 'children': []}; {'id': '33', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '34', 'type': 'block', 'children': ['35']}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'move_tab'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '42', 'type': 'binary_operator', 'children': ['43', '44'], 'value': '+'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '44', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '45', 'type': 'return_statement', 'children': ['46']}; {'id': '46', 'type': 'True', 'children': []}
|
Callback to move a tab to the right
|
def add_dependency(id=None, name=None, dependency_id=None, dependency_name=None):
data = add_dependency_raw(id, name, dependency_id, dependency_name)
if data:
return utils.format_json_list(data)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_dependency'}; {'id': '3', 'type': 'parameters', 'children': ['4', '7', '10', '13']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '6', 'type': 'None', 'children': []}; {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'dependency_id'}; {'id': '12', 'type': 'None', 'children': []}; {'id': '13', 'type': 'default_parameter', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'dependency_name'}; {'id': '15', 'type': 'None', 'children': []}; {'id': '16', 'type': 'block', 'children': ['17', '27']}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'add_dependency_raw'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '24', '25', '26']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'dependency_id'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'dependency_name'}; {'id': '27', 'type': 'if_statement', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'return_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'format_json_list'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'data'}
|
Add an existing BuildConfiguration as a dependency to another BuildConfiguration.
|
def cells(self) -> Generator[Tuple[int, int], None, None]:
yield from itertools.product(
range(self.row_start, self.row_end),
range(self.column_start, self.column_end)
)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '21']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cells'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'type', 'children': ['6']}; {'id': '6', 'type': 'generic_type', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'Generator'}; {'id': '8', 'type': 'type_parameter', 'children': ['9', '17', '19']}; {'id': '9', 'type': 'type', 'children': ['10']}; {'id': '10', 'type': 'generic_type', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'Tuple'}; {'id': '12', 'type': 'type_parameter', 'children': ['13', '15']}; {'id': '13', 'type': 'type', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '15', 'type': 'type', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '17', 'type': 'type', 'children': ['18']}; {'id': '18', 'type': 'None', 'children': []}; {'id': '19', 'type': 'type', 'children': ['20']}; {'id': '20', 'type': 'None', 'children': []}; {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'yield', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'itertools'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'product'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '38']}; {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '31', 'type': 'argument_list', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'row_start'}; {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'row_end'}; {'id': '38', 'type': 'call', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '44']}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'column_start'}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'column_end'}
|
Generate cells in span.
|
def _copy_replace(src, dst, replacements):
with src.open() as infile, dst.open('w') as outfile:
outfile.write(re.sub(
'|'.join(re.escape(k) for k in replacements),
lambda m: str(replacements[m.group(0)]),
infile.read()
))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_copy_replace'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'src'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'dst'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'replacements'}; {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'with_statement', 'children': ['9', '29']}; {'id': '9', 'type': 'with_clause', 'children': ['10', '19']}; {'id': '10', 'type': 'with_item', 'children': ['11']}; {'id': '11', 'type': 'as_pattern', 'children': ['12', '17']}; {'id': '12', 'type': 'call', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'src'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '16', 'type': 'argument_list', 'children': []}; {'id': '17', 'type': 'as_pattern_target', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'infile'}; {'id': '19', 'type': 'with_item', 'children': ['20']}; {'id': '20', 'type': 'as_pattern', 'children': ['21', '27']}; {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'dst'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '27', 'type': 'as_pattern_target', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sub'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '55', '69']}; {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}; {'id': '43', 'type': 'string', 'children': [], 'value': "'|'"}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '45', 'type': 'generator_expression', 'children': ['46', '52']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}; {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'escape'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '52', 'type': 'for_in_clause', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'replacements'}; {'id': '55', 'type': 'lambda', 'children': ['56', '58']}; {'id': '56', 'type': 'lambda_parameters', 'children': ['57']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '58', 'type': 'call', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}; {'id': '61', 'type': 'subscript', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'replacements'}; {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'infile'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '73', 'type': 'argument_list', 'children': []}
|
Copies the src file into dst applying the replacements dict
|
def list_cubes(self):
for file_name in os.listdir(self.directory):
if '.' in file_name:
name, ext = file_name.rsplit('.', 1)
if ext.lower() == 'json':
yield name
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_cubes'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'for_statement', 'children': ['7', '8', '16']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'file_name'}; {'id': '8', 'type': 'call', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'listdir'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '16', 'type': 'block', 'children': ['17']}; {'id': '17', 'type': 'if_statement', 'children': ['18', '21']}; {'id': '18', 'type': 'comparison_operator', 'children': ['19', '20'], 'value': 'in'}; {'id': '19', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'file_name'}; {'id': '21', 'type': 'block', 'children': ['22', '34']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'assignment', 'children': ['24', '27']}; {'id': '24', 'type': 'pattern_list', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'ext'}; {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'file_name'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'rsplit'}; {'id': '31', 'type': 'argument_list', 'children': ['32', '33']}; {'id': '32', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '33', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '34', 'type': 'if_statement', 'children': ['35', '42']}; {'id': '35', 'type': 'comparison_operator', 'children': ['36', '41'], 'value': '=='}; {'id': '36', 'type': 'call', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ext'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '40', 'type': 'argument_list', 'children': []}; {'id': '41', 'type': 'string', 'children': [], 'value': "'json'"}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'yield', 'children': ['45']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'name'}
|
List all available JSON files.
|
def save_relationship(self, relationship_form, *args, **kwargs):
if relationship_form.is_for_update():
return self.update_relationship(relationship_form, *args, **kwargs)
else:
return self.create_relationship(relationship_form, *args, **kwargs)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save_relationship'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'relationship_form'}; {'id': '6', 'type': 'list_splat_pattern', 'children': ['7']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '8', 'type': 'dictionary_splat_pattern', 'children': ['9']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '10', 'type': 'block', 'children': ['11']}; {'id': '11', 'type': 'if_statement', 'children': ['12', '17', '29']}; {'id': '12', 'type': 'call', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'relationship_form'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'is_for_update'}; {'id': '16', 'type': 'argument_list', 'children': []}; {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'return_statement', 'children': ['19']}; {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'update_relationship'}; {'id': '23', 'type': 'argument_list', 'children': ['24', '25', '27']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'relationship_form'}; {'id': '25', 'type': 'list_splat', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '27', 'type': 'dictionary_splat', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '29', 'type': 'else_clause', 'children': ['30']}; {'id': '30', 'type': 'block', 'children': ['31']}; {'id': '31', 'type': 'return_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'create_relationship'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38', '40']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'relationship_form'}; {'id': '38', 'type': 'list_splat', 'children': ['39']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '40', 'type': 'dictionary_splat', 'children': ['41']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'kwargs'}
|
Pass through to provider RelationshipAdminSession.update_relationship
|
def stationary_distribution(P, C=None, mincount_connectivity=0):
from msmtools.analysis.dense.stationary_vector import stationary_distribution as msmstatdist
if C is None:
if is_connected(P, strong=True):
return msmstatdist(P)
else:
raise ValueError('Computing stationary distribution for disconnected matrix. Need count matrix.')
n = np.shape(C)[0]
ctot = np.sum(C)
pi = np.zeros(n)
sets = connected_sets(C, mincount_connectivity=mincount_connectivity, strong=False)
for s in sets:
w = np.sum(C[s, :]) / ctot
pi[s] = w * msmstatdist(P[s, :][:, s])
pi /= np.sum(pi)
return pi
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'stationary_distribution'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'P'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'mincount_connectivity'}; {'id': '10', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '11', 'type': 'block', 'children': ['12', '22', '48', '59', '68', '77', '90', '128', '137']}; {'id': '12', 'type': 'import_from_statement', 'children': ['13', '18']}; {'id': '13', 'type': 'dotted_name', 'children': ['14', '15', '16', '17']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'msmtools'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'analysis'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'dense'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'stationary_vector'}; {'id': '18', 'type': 'aliased_import', 'children': ['19', '21']}; {'id': '19', 'type': 'dotted_name', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'stationary_distribution'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'msmstatdist'}; {'id': '22', 'type': 'if_statement', 'children': ['23', '26']}; {'id': '23', 'type': 'comparison_operator', 'children': ['24', '25'], 'value': 'is'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'block', 'children': ['27']}; {'id': '27', 'type': 'if_statement', 'children': ['28', '35', '41']}; {'id': '28', 'type': 'call', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'is_connected'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'P'}; {'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'strong'}; {'id': '34', 'type': 'True', 'children': []}; {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'return_statement', 'children': ['37']}; {'id': '37', 'type': 'call', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'msmstatdist'}; {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'P'}; {'id': '41', 'type': 'else_clause', 'children': ['42']}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'raise_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}; {'id': '47', 'type': 'string', 'children': [], 'value': "'Computing stationary distribution for disconnected matrix. Need count matrix.'"}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}; {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '51', 'type': 'subscript', 'children': ['52', '58']}; {'id': '52', 'type': 'call', 'children': ['53', '56']}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '58', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'ctot'}; {'id': '62', 'type': 'call', 'children': ['63', '66']}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}; {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'pi'}; {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'zeros'}; {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'sets'}; {'id': '80', 'type': 'call', 'children': ['81', '82']}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'connected_sets'}; {'id': '82', 'type': 'argument_list', 'children': ['83', '84', '87']}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '84', 'type': 'keyword_argument', 'children': ['85', '86']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'mincount_connectivity'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'mincount_connectivity'}; {'id': '87', 'type': 'keyword_argument', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'strong'}; {'id': '89', 'type': 'False', 'children': []}; {'id': '90', 'type': 'for_statement', 'children': ['91', '92', '93']}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'sets'}; {'id': '93', 'type': 'block', 'children': ['94', '109']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}; {'id': '95', 'type': 'assignment', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '97', 'type': 'binary_operator', 'children': ['98', '108'], 'value': '/'}; {'id': '98', 'type': 'call', 'children': ['99', '102']}; {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}; {'id': '103', 'type': 'subscript', 'children': ['104', '105', '106']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '106', 'type': 'slice', 'children': ['107']}; {'id': '107', 'type': 'colon', 'children': []}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'ctot'}; {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '114']}; {'id': '111', 'type': 'subscript', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'pi'}; {'id': '113', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '114', 'type': 'binary_operator', 'children': ['115', '116'], 'value': '*'}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '116', 'type': 'call', 'children': ['117', '118']}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'msmstatdist'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}; {'id': '119', 'type': 'subscript', 'children': ['120', '125', '127']}; {'id': '120', 'type': 'subscript', 'children': ['121', '122', '123']}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'P'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '123', 'type': 'slice', 'children': ['124']}; {'id': '124', 'type': 'colon', 'children': []}; {'id': '125', 'type': 'slice', 'children': ['126']}; {'id': '126', 'type': 'colon', 'children': []}; {'id': '127', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '128', 'type': 'expression_statement', 'children': ['129']}; {'id': '129', 'type': 'augmented_assignment', 'children': ['130', '131'], 'value': '/='}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'pi'}; {'id': '131', 'type': 'call', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}; {'id': '133', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'pi'}; {'id': '137', 'type': 'return_statement', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'pi'}
|
Simple estimator for stationary distribution for multiple strongly connected sets
|
def applyIndex(self, lst, right):
if len(right) != 1:
raise exceptions.EvaluationError('%r can only be applied to one argument, got %r' % (self.left, self.right))
right = right[0]
if isinstance(right, int):
return lst[right]
raise exceptions.EvaluationError("Can't apply %r to argument (%r): integer expected, got %r" % (self.left, self.right, right))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'applyIndex'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'lst'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'right'}; {'id': '7', 'type': 'block', 'children': ['8', '31', '37', '48']}; {'id': '8', 'type': 'if_statement', 'children': ['9', '15']}; {'id': '9', 'type': 'comparison_operator', 'children': ['10', '14'], 'value': '!='}; {'id': '10', 'type': 'call', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'right'}; {'id': '14', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'raise_statement', 'children': ['17']}; {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'exceptions'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'EvaluationError'}; {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'binary_operator', 'children': ['23', '24'], 'value': '%'}; {'id': '23', 'type': 'string', 'children': [], 'value': "'%r can only be applied to one argument, got %r'"}; {'id': '24', 'type': 'tuple', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'left'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'right'}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'right'}; {'id': '34', 'type': 'subscript', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'right'}; {'id': '36', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '37', 'type': 'if_statement', 'children': ['38', '43']}; {'id': '38', 'type': 'call', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'right'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'return_statement', 'children': ['45']}; {'id': '45', 'type': 'subscript', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'lst'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'right'}; {'id': '48', 'type': 'raise_statement', 'children': ['49']}; {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'exceptions'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'EvaluationError'}; {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'binary_operator', 'children': ['55', '56'], 'value': '%'}; {'id': '55', 'type': 'string', 'children': [], 'value': '"Can\'t apply %r to argument (%r): integer expected, got %r"'}; {'id': '56', 'type': 'tuple', 'children': ['57', '60', '63']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'left'}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'right'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'right'}
|
Apply a list to something else.
|
def stream(self):
if not hasattr(self, '_stream'):
self._stream = zmq.eventloop.zmqstream.ZMQStream(self._socket, io_loop=self.io_loop)
return self._stream
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'stream'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '36']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '13']}; {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '10', 'type': 'argument_list', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'string', 'children': [], 'value': "'_stream'"}; {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'assignment', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_stream'}; {'id': '19', 'type': 'call', 'children': ['20', '27']}; {'id': '20', 'type': 'attribute', 'children': ['21', '26']}; {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'zmq'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'eventloop'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'zmqstream'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'ZMQStream'}; {'id': '27', 'type': 'argument_list', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_socket'}; {'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'io_loop'}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'io_loop'}; {'id': '36', 'type': 'return_statement', 'children': ['37']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': '_stream'}
|
Return the current zmqstream, creating one if necessary
|
def from_country(cls, country):
result = cls.list({'sort_by': 'id ASC'})
dc_countries = {}
for dc in result:
if dc['country'] not in dc_countries:
dc_countries[dc['country']] = dc['id']
return dc_countries.get(country)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'from_country'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'country'}; {'id': '6', 'type': 'block', 'children': ['7', '19', '23', '44']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}; {'id': '15', 'type': 'dictionary', 'children': ['16']}; {'id': '16', 'type': 'pair', 'children': ['17', '18']}; {'id': '17', 'type': 'string', 'children': [], 'value': "'sort_by'"}; {'id': '18', 'type': 'string', 'children': [], 'value': "'id ASC'"}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'dc_countries'}; {'id': '22', 'type': 'dictionary', 'children': []}; {'id': '23', 'type': 'for_statement', 'children': ['24', '25', '26']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'dc'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '26', 'type': 'block', 'children': ['27']}; {'id': '27', 'type': 'if_statement', 'children': ['28', '33']}; {'id': '28', 'type': 'comparison_operator', 'children': ['29', '32'], 'value': 'not in'}; {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'dc'}; {'id': '31', 'type': 'string', 'children': [], 'value': "'country'"}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'dc_countries'}; {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}; {'id': '35', 'type': 'assignment', 'children': ['36', '41']}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'dc_countries'}; {'id': '38', 'type': 'subscript', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'dc'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'country'"}; {'id': '41', 'type': 'subscript', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'dc'}; {'id': '43', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '44', 'type': 'return_statement', 'children': ['45']}; {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'dc_countries'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'country'}
|
Retrieve the first datacenter id associated to a country.
|
def package_has_version_file(package_name):
version_file_path = helpers.package_file_path('_version.py', package_name)
return os.path.isfile(version_file_path)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'package_has_version_file'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'package_name'}; {'id': '5', 'type': 'block', 'children': ['6', '16']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'version_file_path'}; {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'helpers'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'package_file_path'}; {'id': '13', 'type': 'argument_list', 'children': ['14', '15']}; {'id': '14', 'type': 'string', 'children': [], 'value': "'_version.py'"}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'package_name'}; {'id': '16', 'type': 'return_statement', 'children': ['17']}; {'id': '17', 'type': 'call', 'children': ['18', '23']}; {'id': '18', 'type': 'attribute', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'isfile'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'version_file_path'}
|
Check to make sure _version.py is contained in the package
|
def Printer(open_file=sys.stdout, closing=False):
try:
while True:
logstr = (yield)
open_file.write(logstr)
open_file.write('\n')
except GeneratorExit:
if closing:
try: open_file.close()
except: pass
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'Printer'}; {'id': '3', 'type': 'parameters', 'children': ['4', '9']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'open_file'}; {'id': '6', 'type': 'attribute', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'closing'}; {'id': '11', 'type': 'False', 'children': []}; {'id': '12', 'type': 'block', 'children': ['13']}; {'id': '13', 'type': 'try_statement', 'children': ['14', '37']}; {'id': '14', 'type': 'block', 'children': ['15']}; {'id': '15', 'type': 'while_statement', 'children': ['16', '17']}; {'id': '16', 'type': 'True', 'children': []}; {'id': '17', 'type': 'block', 'children': ['18', '23', '30']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'logstr'}; {'id': '21', 'type': '()', 'children': ['22']}; {'id': '22', 'type': 'yield', 'children': []}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'open_file'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'logstr'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'open_file'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '37', 'type': 'except_clause', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'GeneratorExit'}; {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'if_statement', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'closing'}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'try_statement', 'children': ['44', '51']}; {'id': '44', 'type': 'block', 'children': ['45']}; {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}; {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'open_file'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '50', 'type': 'argument_list', 'children': []}; {'id': '51', 'type': 'except_clause', 'children': ['52']}; {'id': '52', 'type': 'block', 'children': ['53']}; {'id': '53', 'type': 'pass_statement', 'children': []}
|
Prints items with a timestamp.
|
def unpack_rgb_image(plane):
assert plane.bits_per_pixel == 24, "{} != 24".format(plane.bits_per_pixel)
size = point.Point.build(plane.size)
data = np.frombuffer(plane.data, dtype=np.uint8)
return data.reshape(size.y, size.x, 3)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'unpack_rgb_image'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'plane'}; {'id': '5', 'type': 'block', 'children': ['6', '20', '33', '49']}; {'id': '6', 'type': 'assert_statement', 'children': ['7', '12']}; {'id': '7', 'type': 'comparison_operator', 'children': ['8', '11'], 'value': '=='}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'plane'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'bits_per_pixel'}; {'id': '11', 'type': 'integer', 'children': [], 'value': '24'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'string', 'children': [], 'value': '"{} != 24"'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'plane'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'bits_per_pixel'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '23', 'type': 'call', 'children': ['24', '29']}; {'id': '24', 'type': 'attribute', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'point'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'Point'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'build'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'plane'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'frombuffer'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '44']}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'plane'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'dtype'}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'uint8'}; {'id': '49', 'type': 'return_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '54']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'reshape'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '58', '61']}; {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '61', 'type': 'integer', 'children': [], 'value': '3'}
|
Return a correctly shaped numpy array given the image bytes.
|
def timelines(fig, y, xstart, xstop, color='b'):
fig.hlines(y, xstart, xstop, color, lw=4)
fig.vlines(xstart, y+0.03, y-0.03, color, lw=2)
fig.vlines(xstop, y+0.03, y-0.03, color, lw=2)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'timelines'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'fig'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'xstart'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'xstop'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '10', 'type': 'string', 'children': [], 'value': "'b'"}; {'id': '11', 'type': 'block', 'children': ['12', '25', '42']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'fig'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'hlines'}; {'id': '17', 'type': 'argument_list', 'children': ['18', '19', '20', '21', '22']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'xstart'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'xstop'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'lw'}; {'id': '24', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'fig'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'vlines'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32', '35', '38', '39']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'xstart'}; {'id': '32', 'type': 'binary_operator', 'children': ['33', '34'], 'value': '+'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '34', 'type': 'float', 'children': [], 'value': '0.03'}; {'id': '35', 'type': 'binary_operator', 'children': ['36', '37'], 'value': '-'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '37', 'type': 'float', 'children': [], 'value': '0.03'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'lw'}; {'id': '41', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}; {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'fig'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'vlines'}; {'id': '47', 'type': 'argument_list', 'children': ['48', '49', '52', '55', '56']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'xstop'}; {'id': '49', 'type': 'binary_operator', 'children': ['50', '51'], 'value': '+'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '51', 'type': 'float', 'children': [], 'value': '0.03'}; {'id': '52', 'type': 'binary_operator', 'children': ['53', '54'], 'value': '-'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '54', 'type': 'float', 'children': [], 'value': '0.03'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'lw'}; {'id': '58', 'type': 'integer', 'children': [], 'value': '2'}
|
Plot timelines at y from xstart to xstop with given color.
|
def read(self, start_position: int, size: int) -> memoryview:
return memoryview(self._bytes)[start_position:start_position + size]
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'read'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'typed_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'start_position'}; {'id': '7', 'type': 'type', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '9', 'type': 'typed_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '11', 'type': 'type', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '13', 'type': 'type', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'memoryview'}; {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}; {'id': '17', 'type': 'subscript', 'children': ['18', '24']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'memoryview'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': '_bytes'}; {'id': '24', 'type': 'slice', 'children': ['25', '26', '27']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'start_position'}; {'id': '26', 'type': 'colon', 'children': []}; {'id': '27', 'type': 'binary_operator', 'children': ['28', '29'], 'value': '+'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'start_position'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'size'}
|
Return a view into the memory
|
def die(msg, errlvl=1, prefix="Error: "):
stderr("%s%s\n" % (prefix, msg))
sys.exit(errlvl)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'die'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'errlvl'}; {'id': '7', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '10', 'type': 'string', 'children': [], 'value': '"Error: "'}; {'id': '11', 'type': 'block', 'children': ['12', '21']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'binary_operator', 'children': ['17', '18'], 'value': '%'}; {'id': '17', 'type': 'string', 'children': [], 'value': '"%s%s\\n"'}; {'id': '18', 'type': 'tuple', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '26']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'errlvl'}
|
Convenience function to write short message to stderr and quit.
|
def _traverse_report(data):
if 'items' not in data:
return {}
out = {}
for item in data['items']:
skip = (item['severity'] == 'NonDisplay' or
item['itemKey'] == 'categoryDesc' or
item['value'] in [None, 'Null', 'N/A', 'NULL'])
if skip:
continue
value = 'Ok' if item['value'] == '0.0' else item['value']
out[item['itemKey']] = value
out.update(_traverse_report(item))
return out
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_traverse_report'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '5', 'type': 'block', 'children': ['6', '13', '17', '83']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '10']}; {'id': '7', 'type': 'comparison_operator', 'children': ['8', '9'], 'value': 'not in'}; {'id': '8', 'type': 'string', 'children': [], 'value': "'items'"}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '10', 'type': 'block', 'children': ['11']}; {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'dictionary', 'children': []}; {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '16', 'type': 'dictionary', 'children': []}; {'id': '17', 'type': 'for_statement', 'children': ['18', '19', '22']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '19', 'type': 'subscript', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '21', 'type': 'string', 'children': [], 'value': "'items'"}; {'id': '22', 'type': 'block', 'children': ['23', '48', '52', '65', '73']}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'skip'}; {'id': '26', 'type': '()', 'children': ['27']}; {'id': '27', 'type': 'boolean_operator', 'children': ['28', '39'], 'value': 'or'}; {'id': '28', 'type': 'boolean_operator', 'children': ['29', '34'], 'value': 'or'}; {'id': '29', 'type': 'comparison_operator', 'children': ['30', '33'], 'value': '=='}; {'id': '30', 'type': 'subscript', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '32', 'type': 'string', 'children': [], 'value': "'severity'"}; {'id': '33', 'type': 'string', 'children': [], 'value': "'NonDisplay'"}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '38'], 'value': '=='}; {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '37', 'type': 'string', 'children': [], 'value': "'itemKey'"}; {'id': '38', 'type': 'string', 'children': [], 'value': "'categoryDesc'"}; {'id': '39', 'type': 'comparison_operator', 'children': ['40', '43'], 'value': 'in'}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '42', 'type': 'string', 'children': [], 'value': "'value'"}; {'id': '43', 'type': 'list', 'children': ['44', '45', '46', '47'], 'value': "[None, 'Null', 'N/A', 'NULL']"}; {'id': '44', 'type': 'None', 'children': []}; {'id': '45', 'type': 'string', 'children': [], 'value': "'Null'"}; {'id': '46', 'type': 'string', 'children': [], 'value': "'N/A'"}; {'id': '47', 'type': 'string', 'children': [], 'value': "'NULL'"}; {'id': '48', 'type': 'if_statement', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'skip'}; {'id': '50', 'type': 'block', 'children': ['51']}; {'id': '51', 'type': 'continue_statement', 'children': []}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}; {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '55', 'type': 'conditional_expression', 'children': ['56', '57', '62'], 'value': 'if'}; {'id': '56', 'type': 'string', 'children': [], 'value': "'Ok'"}; {'id': '57', 'type': 'comparison_operator', 'children': ['58', '61'], 'value': '=='}; {'id': '58', 'type': 'subscript', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '60', 'type': 'string', 'children': [], 'value': "'value'"}; {'id': '61', 'type': 'string', 'children': [], 'value': "'0.0'"}; {'id': '62', 'type': 'subscript', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '64', 'type': 'string', 'children': [], 'value': "'value'"}; {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '72']}; {'id': '67', 'type': 'subscript', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '71', 'type': 'string', 'children': [], 'value': "'itemKey'"}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '78']}; {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}; {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': '_traverse_report'}; {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '83', 'type': 'return_statement', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'out'}
|
Recursively traverse vehicle health report.
|
def clipper(self):
for sample in self.runmetadata:
replacementresults = dict()
try:
if self.analysistype != 'sixteens_full' and self.analysistype != 'resfinder':
for gene in sample[self.analysistype].faidict:
try:
percentidentity = sample[self.analysistype].results[gene]
try:
passingfeature = list()
for location, feature in sample[self.analysistype].features[gene].items():
if len(feature) < int(float(sample[self.analysistype].avgdepth[gene])) * 0.3:
passingfeature.append(True)
else:
passingfeature.append(False)
if all(passingfeature):
replacementresults[gene] = percentidentity
except KeyError:
replacementresults[gene] = percentidentity
except KeyError:
pass
sample[self.analysistype].results = replacementresults
except AttributeError:
pass
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'clipper'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'for_statement', 'children': ['7', '8', '11']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'runmetadata'}; {'id': '11', 'type': 'block', 'children': ['12', '18']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'replacementresults'}; {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'try_statement', 'children': ['19', '158']}; {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'if_statement', 'children': ['21', '32']}; {'id': '21', 'type': 'boolean_operator', 'children': ['22', '27'], 'value': 'and'}; {'id': '22', 'type': 'comparison_operator', 'children': ['23', '26'], 'value': '!='}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'analysistype'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'sixteens_full'"}; {'id': '27', 'type': 'comparison_operator', 'children': ['28', '31'], 'value': '!='}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'analysistype'}; {'id': '31', 'type': 'string', 'children': [], 'value': "'resfinder'"}; {'id': '32', 'type': 'block', 'children': ['33', '148']}; {'id': '33', 'type': 'for_statement', 'children': ['34', '35', '42']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'gene'}; {'id': '35', 'type': 'attribute', 'children': ['36', '41']}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'analysistype'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'faidict'}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'try_statement', 'children': ['44', '144']}; {'id': '44', 'type': 'block', 'children': ['45', '57']}; {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'percentidentity'}; {'id': '48', 'type': 'subscript', 'children': ['49', '56']}; {'id': '49', 'type': 'attribute', 'children': ['50', '55']}; {'id': '50', 'type': 'subscript', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'analysistype'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'gene'}; {'id': '57', 'type': 'try_statement', 'children': ['58', '135']}; {'id': '58', 'type': 'block', 'children': ['59', '65', '123']}; {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'passingfeature'}; {'id': '62', 'type': 'call', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '64', 'type': 'argument_list', 'children': []}; {'id': '65', 'type': 'for_statement', 'children': ['66', '69', '82']}; {'id': '66', 'type': 'pattern_list', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'feature'}; {'id': '69', 'type': 'call', 'children': ['70', '81']}; {'id': '70', 'type': 'attribute', 'children': ['71', '80']}; {'id': '71', 'type': 'subscript', 'children': ['72', '79']}; {'id': '72', 'type': 'attribute', 'children': ['73', '78']}; {'id': '73', 'type': 'subscript', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'analysistype'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'features'}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'gene'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '81', 'type': 'argument_list', 'children': []}; {'id': '82', 'type': 'block', 'children': ['83']}; {'id': '83', 'type': 'if_statement', 'children': ['84', '106', '114']}; {'id': '84', 'type': 'comparison_operator', 'children': ['85', '89'], 'value': '<'}; {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'feature'}; {'id': '89', 'type': 'binary_operator', 'children': ['90', '105'], 'value': '*'}; {'id': '90', 'type': 'call', 'children': ['91', '92']}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}; {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'subscript', 'children': ['97', '104']}; {'id': '97', 'type': 'attribute', 'children': ['98', '103']}; {'id': '98', 'type': 'subscript', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'analysistype'}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'avgdepth'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'gene'}; {'id': '105', 'type': 'float', 'children': [], 'value': '0.3'}; {'id': '106', 'type': 'block', 'children': ['107']}; {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'call', 'children': ['109', '112']}; {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'passingfeature'}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}; {'id': '113', 'type': 'True', 'children': []}; {'id': '114', 'type': 'else_clause', 'children': ['115']}; {'id': '115', 'type': 'block', 'children': ['116']}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}; {'id': '117', 'type': 'call', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}; {'id': '119', 'type': 'identifier', 'children': [], 'value': 'passingfeature'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'False', 'children': []}; {'id': '123', 'type': 'if_statement', 'children': ['124', '128']}; {'id': '124', 'type': 'call', 'children': ['125', '126']}; {'id': '125', 'type': 'identifier', 'children': [], 'value': 'all'}; {'id': '126', 'type': 'argument_list', 'children': ['127']}; {'id': '127', 'type': 'identifier', 'children': [], 'value': 'passingfeature'}; {'id': '128', 'type': 'block', 'children': ['129']}; {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '134']}; {'id': '131', 'type': 'subscript', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'replacementresults'}; {'id': '133', 'type': 'identifier', 'children': [], 'value': 'gene'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'percentidentity'}; {'id': '135', 'type': 'except_clause', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'KeyError'}; {'id': '137', 'type': 'block', 'children': ['138']}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}; {'id': '139', 'type': 'assignment', 'children': ['140', '143']}; {'id': '140', 'type': 'subscript', 'children': ['141', '142']}; {'id': '141', 'type': 'identifier', 'children': [], 'value': 'replacementresults'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'gene'}; {'id': '143', 'type': 'identifier', 'children': [], 'value': 'percentidentity'}; {'id': '144', 'type': 'except_clause', 'children': ['145', '146']}; {'id': '145', 'type': 'identifier', 'children': [], 'value': 'KeyError'}; {'id': '146', 'type': 'block', 'children': ['147']}; {'id': '147', 'type': 'pass_statement', 'children': []}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}; {'id': '149', 'type': 'assignment', 'children': ['150', '157']}; {'id': '150', 'type': 'attribute', 'children': ['151', '156']}; {'id': '151', 'type': 'subscript', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '155', 'type': 'identifier', 'children': [], 'value': 'analysistype'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '157', 'type': 'identifier', 'children': [], 'value': 'replacementresults'}; {'id': '158', 'type': 'except_clause', 'children': ['159', '160']}; {'id': '159', 'type': 'identifier', 'children': [], 'value': 'AttributeError'}; {'id': '160', 'type': 'block', 'children': ['161']}; {'id': '161', 'type': 'pass_statement', 'children': []}
|
Filter out results based on the presence of cigar features such as internal soft-clipping
|
def fromints(cls, ints):
return cls.frombitsets(map(cls.BitSet.fromint, ints))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fromints'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'ints'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'return_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'frombitsets'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '21']}; {'id': '16', 'type': 'attribute', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'BitSet'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'fromint'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'ints'}
|
Series from integer rank arguments.
|
def _build_row(self, row, parent, align, border):
tr = etree.SubElement(parent, 'tr')
tag = 'td'
if parent.tag == 'thead':
tag = 'th'
cells = self._split_row(row, border)
for i, a in enumerate(align):
c = etree.SubElement(tr, tag)
try:
c.text = cells[i].strip()
except IndexError:
c.text = ""
if a:
c.set('align', a)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_build_row'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'align'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'border'}; {'id': '9', 'type': 'block', 'children': ['10', '20', '24', '35', '45']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'tr'}; {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'etree'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'SubElement'}; {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '19', 'type': 'string', 'children': [], 'value': "'tr'"}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '23', 'type': 'string', 'children': [], 'value': "'td'"}; {'id': '24', 'type': 'if_statement', 'children': ['25', '30']}; {'id': '25', 'type': 'comparison_operator', 'children': ['26', '29'], 'value': '=='}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '29', 'type': 'string', 'children': [], 'value': "'thead'"}; {'id': '30', 'type': 'block', 'children': ['31']}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '34', 'type': 'string', 'children': [], 'value': "'th'"}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'cells'}; {'id': '38', 'type': 'call', 'children': ['39', '42']}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': '_split_row'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'border'}; {'id': '45', 'type': 'for_statement', 'children': ['46', '49', '53']}; {'id': '46', 'type': 'pattern_list', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'align'}; {'id': '53', 'type': 'block', 'children': ['54', '64', '87']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}; {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'etree'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'SubElement'}; {'id': '61', 'type': 'argument_list', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'tr'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '64', 'type': 'try_statement', 'children': ['65', '78']}; {'id': '65', 'type': 'block', 'children': ['66']}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}; {'id': '67', 'type': 'assignment', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '71', 'type': 'call', 'children': ['72', '77']}; {'id': '72', 'type': 'attribute', 'children': ['73', '76']}; {'id': '73', 'type': 'subscript', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'cells'}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '77', 'type': 'argument_list', 'children': []}; {'id': '78', 'type': 'except_clause', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'IndexError'}; {'id': '80', 'type': 'block', 'children': ['81']}; {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '86']}; {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '86', 'type': 'string', 'children': [], 'value': '""'}; {'id': '87', 'type': 'if_statement', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}; {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '95', 'type': 'argument_list', 'children': ['96', '97']}; {'id': '96', 'type': 'string', 'children': [], 'value': "'align'"}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'a'}
|
Given a row of text, build table cells.
|
def addPort(n: LNode, intf: Interface):
d = PortTypeFromDir(intf._direction)
ext_p = LayoutExternalPort(
n, name=intf._name, direction=d, node2lnode=n._node2lnode)
ext_p.originObj = originObjOfPort(intf)
n.children.append(ext_p)
addPortToLNode(ext_p, intf, reverseDirection=True)
return ext_p
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'addPort'}; {'id': '3', 'type': 'parameters', 'children': ['4', '8']}; {'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '6', 'type': 'type', 'children': ['7']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'LNode'}; {'id': '8', 'type': 'typed_parameter', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'intf'}; {'id': '10', 'type': 'type', 'children': ['11']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'Interface'}; {'id': '12', 'type': 'block', 'children': ['13', '22', '42', '51', '60', '69']}; {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '16', 'type': 'call', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'PortTypeFromDir'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'intf'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': '_direction'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'ext_p'}; {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'LayoutExternalPort'}; {'id': '27', 'type': 'argument_list', 'children': ['28', '29', '34', '37']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'intf'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': '_name'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'node2lnode'}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': '_node2lnode'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}; {'id': '43', 'type': 'assignment', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'ext_p'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'originObj'}; {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'originObjOfPort'}; {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'intf'}; {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '58']}; {'id': '53', 'type': 'attribute', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'ext_p'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}; {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'addPortToLNode'}; {'id': '63', 'type': 'argument_list', 'children': ['64', '65', '66']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'ext_p'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'intf'}; {'id': '66', 'type': 'keyword_argument', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'reverseDirection'}; {'id': '68', 'type': 'True', 'children': []}; {'id': '69', 'type': 'return_statement', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'ext_p'}
|
Add LayoutExternalPort for interface
|
def total_volume_per_neurite(neurites, neurite_type=NeuriteType.all):
return list(sum(s.volume for s in n.iter_sections())
for n in iter_neurites(neurites, filt=is_type(neurite_type)))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'total_volume_per_neurite'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'neurites'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'neurite_type'}; {'id': '7', 'type': 'attribute', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'NeuriteType'}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'all'}; {'id': '10', 'type': 'block', 'children': ['11']}; {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '14', 'type': 'generator_expression', 'children': ['15', '28']}; {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '17', 'type': 'generator_expression', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'volume'}; {'id': '21', 'type': 'for_in_clause', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'iter_sections'}; {'id': '27', 'type': 'argument_list', 'children': []}; {'id': '28', 'type': 'for_in_clause', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '30', 'type': 'call', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'iter_neurites'}; {'id': '32', 'type': 'argument_list', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'neurites'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'filt'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'is_type'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'neurite_type'}
|
Get the volume per neurite in a collection
|
def _parse_summary_frames(self, file_obj):
for _ in range(self.n_summary_frames):
dom_id = unpack('<i', file_obj.read(4))[0]
dq_status = file_obj.read(4)
dom_status = unpack('<iiii', file_obj.read(16))
raw_rates = unpack('b' * 31, file_obj.read(31))
pmt_rates = [self._get_rate(value) for value in raw_rates]
self.summary_frames[dom_id] = pmt_rates
self.dq_status[dom_id] = dq_status
self.dom_status[dom_id] = dom_status
self.dom_rates[dom_id] = np.sum(pmt_rates)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_parse_summary_frames'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'file_obj'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'for_statement', 'children': ['8', '9', '15']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'n_summary_frames'}; {'id': '15', 'type': 'block', 'children': ['16', '31', '40', '53', '68', '81', '89', '97', '105']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'dom_id'}; {'id': '19', 'type': 'subscript', 'children': ['20', '30']}; {'id': '20', 'type': 'call', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'unpack'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '24']}; {'id': '23', 'type': 'string', 'children': [], 'value': "'<i'"}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'file_obj'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}; {'id': '29', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '30', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'dq_status'}; {'id': '34', 'type': 'call', 'children': ['35', '38']}; {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'file_obj'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}; {'id': '39', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}; {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'dom_status'}; {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'unpack'}; {'id': '45', 'type': 'argument_list', 'children': ['46', '47']}; {'id': '46', 'type': 'string', 'children': [], 'value': "'<iiii'"}; {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'file_obj'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'integer', 'children': [], 'value': '16'}; {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'raw_rates'}; {'id': '56', 'type': 'call', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'unpack'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '62']}; {'id': '59', 'type': 'binary_operator', 'children': ['60', '61'], 'value': '*'}; {'id': '60', 'type': 'string', 'children': [], 'value': "'b'"}; {'id': '61', 'type': 'integer', 'children': [], 'value': '31'}; {'id': '62', 'type': 'call', 'children': ['63', '66']}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'file_obj'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}; {'id': '67', 'type': 'integer', 'children': [], 'value': '31'}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}; {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'pmt_rates'}; {'id': '71', 'type': 'list_comprehension', 'children': ['72', '78']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}; {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '75', 'type': 'identifier', 'children': [], 'value': '_get_rate'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '78', 'type': 'for_in_clause', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'raw_rates'}; {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '88']}; {'id': '83', 'type': 'subscript', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'summary_frames'}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'dom_id'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'pmt_rates'}; {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '96']}; {'id': '91', 'type': 'subscript', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'dq_status'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'dom_id'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'dq_status'}; {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '104']}; {'id': '99', 'type': 'subscript', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'dom_status'}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'dom_id'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'dom_status'}; {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '112']}; {'id': '107', 'type': 'subscript', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'dom_rates'}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'dom_id'}; {'id': '112', 'type': 'call', 'children': ['113', '116']}; {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'pmt_rates'}
|
Iterate through the byte data and fill the summary_frames
|
def neighbors(self, distance=2.0):
dgrid = self.distance_grid.reshape(self.num_neurons, self.num_neurons)
for x, y in zip(*np.nonzero(dgrid <= distance)):
if x != y:
yield x, y
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'neighbors'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'distance'}; {'id': '7', 'type': 'float', 'children': [], 'value': '2.0'}; {'id': '8', 'type': 'block', 'children': ['9', '25']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'dgrid'}; {'id': '12', 'type': 'call', 'children': ['13', '18']}; {'id': '13', 'type': 'attribute', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'distance_grid'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'reshape'}; {'id': '18', 'type': 'argument_list', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'num_neurons'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'num_neurons'}; {'id': '25', 'type': 'for_statement', 'children': ['26', '29', '41']}; {'id': '26', 'type': 'pattern_list', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'list_splat', 'children': ['33']}; {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'nonzero'}; {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': '<='}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'dgrid'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'distance'}; {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'if_statement', 'children': ['43', '46']}; {'id': '43', 'type': 'comparison_operator', 'children': ['44', '45'], 'value': '!='}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '46', 'type': 'block', 'children': ['47']}; {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'yield', 'children': ['49']}; {'id': '49', 'type': 'expression_list', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'y'}
|
Get all neighbors for all neurons.
|
def set(self, shape):
self.bottom, self.left = shape.bottom, shape.left
self.width, self.height = shape.width, shape.height
return self
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'set'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '6', 'type': 'block', 'children': ['7', '23', '39']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '16']}; {'id': '9', 'type': 'pattern_list', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'bottom'}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'left'}; {'id': '16', 'type': 'expression_list', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'bottom'}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'left'}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '32']}; {'id': '25', 'type': 'pattern_list', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'width'}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'height'}; {'id': '32', 'type': 'expression_list', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'width'}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'height'}; {'id': '39', 'type': 'return_statement', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'}
|
Fill this rectangle with the dimensions of the given shape.
|
def extract_causal_relations(self):
relations = [e for e in self.doc.extractions if
'DirectedRelation' in e['labels'] and
'Causal' in e['labels']]
for relation in relations:
stmt = self.get_causal_relation(relation)
if stmt is not None:
self.statements.append(stmt)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'extract_causal_relations'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '30']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'relations'}; {'id': '9', 'type': 'list_comprehension', 'children': ['10', '11', '18']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '11', 'type': 'for_in_clause', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '13', 'type': 'attribute', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'doc'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'extractions'}; {'id': '18', 'type': 'if_clause', 'children': ['19']}; {'id': '19', 'type': 'boolean_operator', 'children': ['20', '25'], 'value': 'and'}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': 'in'}; {'id': '21', 'type': 'string', 'children': [], 'value': "'DirectedRelation'"}; {'id': '22', 'type': 'subscript', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '24', 'type': 'string', 'children': [], 'value': "'labels'"}; {'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': 'in'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'Causal'"}; {'id': '27', 'type': 'subscript', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '29', 'type': 'string', 'children': [], 'value': "'labels'"}; {'id': '30', 'type': 'for_statement', 'children': ['31', '32', '33']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'relation'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'relations'}; {'id': '33', 'type': 'block', 'children': ['34', '43']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}; {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'stmt'}; {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'get_causal_relation'}; {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'relation'}; {'id': '43', 'type': 'if_statement', 'children': ['44', '47']}; {'id': '44', 'type': 'comparison_operator', 'children': ['45', '46'], 'value': 'is not'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'stmt'}; {'id': '46', 'type': 'None', 'children': []}; {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}; {'id': '49', 'type': 'call', 'children': ['50', '55']}; {'id': '50', 'type': 'attribute', 'children': ['51', '54']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'statements'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'stmt'}
|
Extract causal relations as Statements.
|
def cli(yamlfile, directory, out, classname, format):
DotGenerator(yamlfile, format).serialize(classname=classname, dirname=directory, filename=out)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cli'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'yamlfile'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'classname'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '9', 'type': 'block', 'children': ['10']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'call', 'children': ['12', '19']}; {'id': '12', 'type': 'attribute', 'children': ['13', '18']}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'DotGenerator'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'yamlfile'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'serialize'}; {'id': '19', 'type': 'argument_list', 'children': ['20', '23', '26']}; {'id': '20', 'type': 'keyword_argument', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'classname'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'classname'}; {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'dirname'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'out'}
|
Generate graphviz representations of the biolink model
|
def read_only_s3_bucket_policy_statements(buckets, folder="*"):
list_buckets = [s3_arn(b) for b in buckets]
object_buckets = [s3_objects_arn(b, folder) for b in buckets]
bucket_resources = list_buckets + object_buckets
return [
Statement(
Effect=Allow,
Resource=[s3_arn("*")],
Action=[s3.ListAllMyBuckets]
),
Statement(
Effect=Allow,
Resource=bucket_resources,
Action=[Action('s3', 'Get*'), Action('s3', 'List*')]
)
]
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'read_only_s3_bucket_policy_statements'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'buckets'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'folder'}; {'id': '7', 'type': 'string', 'children': [], 'value': '"*"'}; {'id': '8', 'type': 'block', 'children': ['9', '20', '32', '38']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'list_buckets'}; {'id': '12', 'type': 'list_comprehension', 'children': ['13', '17']}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 's3_arn'}; {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '17', 'type': 'for_in_clause', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'buckets'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'object_buckets'}; {'id': '23', 'type': 'list_comprehension', 'children': ['24', '29']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 's3_objects_arn'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'folder'}; {'id': '29', 'type': 'for_in_clause', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'buckets'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}; {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'bucket_resources'}; {'id': '35', 'type': 'binary_operator', 'children': ['36', '37'], 'value': '+'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'list_buckets'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'object_buckets'}; {'id': '38', 'type': 'return_statement', 'children': ['39']}; {'id': '39', 'type': 'list', 'children': ['40', '59'], 'value': '[\n Statement(\n Effect=Allow,\n Resource=[s3_arn("*")],\n Action=[s3.ListAllMyBuckets]\n ),\n Statement(\n Effect=Allow,\n Resource=bucket_resources,\n Action=[Action(\'s3\', \'Get*\'), Action(\'s3\', \'List*\')]\n )\n ]'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'Statement'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '46', '53']}; {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'Effect'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'Allow'}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'Resource'}; {'id': '48', 'type': 'list', 'children': ['49'], 'value': '[s3_arn("*")]'}; {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 's3_arn'}; {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'string', 'children': [], 'value': '"*"'}; {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'Action'}; {'id': '55', 'type': 'list', 'children': ['56'], 'value': '[s3.ListAllMyBuckets]'}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 's3'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'ListAllMyBuckets'}; {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'Statement'}; {'id': '61', 'type': 'argument_list', 'children': ['62', '65', '68']}; {'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'Effect'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'Allow'}; {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'Resource'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'bucket_resources'}; {'id': '68', 'type': 'keyword_argument', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'Action'}; {'id': '70', 'type': 'list', 'children': ['71', '76'], 'value': "[Action('s3', 'Get*'), Action('s3', 'List*')]"}; {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'Action'}; {'id': '73', 'type': 'argument_list', 'children': ['74', '75']}; {'id': '74', 'type': 'string', 'children': [], 'value': "'s3'"}; {'id': '75', 'type': 'string', 'children': [], 'value': "'Get*'"}; {'id': '76', 'type': 'call', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'Action'}; {'id': '78', 'type': 'argument_list', 'children': ['79', '80']}; {'id': '79', 'type': 'string', 'children': [], 'value': "'s3'"}; {'id': '80', 'type': 'string', 'children': [], 'value': "'List*'"}
|
Read only policy an s3 bucket.
|
def build_default_filepath(self):
return os.path.join(
self.app_config.name,
'scripts',
self.template_relpath + '.js',
)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'build_default_filepath'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '13']}; {'id': '8', 'type': 'attribute', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '13', 'type': 'argument_list', 'children': ['14', '19', '20']}; {'id': '14', 'type': 'attribute', 'children': ['15', '18']}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'app_config'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '19', 'type': 'string', 'children': [], 'value': "'scripts'"}; {'id': '20', 'type': 'binary_operator', 'children': ['21', '24'], 'value': '+'}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'template_relpath'}; {'id': '24', 'type': 'string', 'children': [], 'value': "'.js'"}
|
Called when 'filepath' is not defined in the settings
|
def to_dict(cls, acl):
return {
"perms": acl.perms,
"id": {
"scheme": acl.id.scheme,
"id": acl.id.id
}
}
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_dict'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'acl'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'return_statement', 'children': ['8']}; {'id': '8', 'type': 'dictionary', 'children': ['9', '14']}; {'id': '9', 'type': 'pair', 'children': ['10', '11']}; {'id': '10', 'type': 'string', 'children': [], 'value': '"perms"'}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'acl'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'perms'}; {'id': '14', 'type': 'pair', 'children': ['15', '16']}; {'id': '15', 'type': 'string', 'children': [], 'value': '"id"'}; {'id': '16', 'type': 'dictionary', 'children': ['17', '24']}; {'id': '17', 'type': 'pair', 'children': ['18', '19']}; {'id': '18', 'type': 'string', 'children': [], 'value': '"scheme"'}; {'id': '19', 'type': 'attribute', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'acl'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '24', 'type': 'pair', 'children': ['25', '26']}; {'id': '25', 'type': 'string', 'children': [], 'value': '"id"'}; {'id': '26', 'type': 'attribute', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'acl'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'id'}
|
transform an ACL to a dict
|
def asyncStarCmap(asyncCallable, iterable):
results = []
yield coopStar(asyncCallable, results.append, iterable)
returnValue(results)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'asyncStarCmap'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'asyncCallable'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'iterable'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '21']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '10', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'yield', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'coopStar'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '17', '20']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'asyncCallable'}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'iterable'}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'returnValue'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'results'}
|
itertools.starmap for deferred callables using cooperative multitasking
|
def team_accessLogs(self, **kwargs) -> SlackResponse:
self._validate_xoxp_token()
return self.api_call("team.accessLogs", http_verb="GET", params=kwargs)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'team_accessLogs'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'dictionary_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '7', 'type': 'type', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'SlackResponse'}; {'id': '9', 'type': 'block', 'children': ['10', '16']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_validate_xoxp_token'}; {'id': '15', 'type': 'argument_list', 'children': []}; {'id': '16', 'type': 'return_statement', 'children': ['17']}; {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'api_call'}; {'id': '21', 'type': 'argument_list', 'children': ['22', '23', '26']}; {'id': '22', 'type': 'string', 'children': [], 'value': '"team.accessLogs"'}; {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'http_verb'}; {'id': '25', 'type': 'string', 'children': [], 'value': '"GET"'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'kwargs'}
|
Gets the access logs for the current team.
|
def Query(self, sql_query):
results = {}
try:
self._connection = sqlite.connect(self.name)
self._connection.execute("PRAGMA journal_mode=%s" % self.journal_mode)
self._cursor = self._connection.cursor()
results = self._cursor.execute(sql_query).fetchall()
except sqlite.Error as error_string:
logging.warning("SQLite error %s", error_string)
return results
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'Query'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'sql_query'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '82']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '10', 'type': 'dictionary', 'children': []}; {'id': '11', 'type': 'try_statement', 'children': ['12', '66']}; {'id': '12', 'type': 'block', 'children': ['13', '26', '39', '51']}; {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '18']}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': '_connection'}; {'id': '18', 'type': 'call', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'sqlite'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'connect'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'call', 'children': ['28', '33']}; {'id': '28', 'type': 'attribute', 'children': ['29', '32']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': '_connection'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'execute'}; {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '36'], 'value': '%'}; {'id': '35', 'type': 'string', 'children': [], 'value': '"PRAGMA journal_mode=%s"'}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'journal_mode'}; {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '44']}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': '_cursor'}; {'id': '44', 'type': 'call', 'children': ['45', '50']}; {'id': '45', 'type': 'attribute', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': '_connection'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '50', 'type': 'argument_list', 'children': []}; {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '54', 'type': 'call', 'children': ['55', '65']}; {'id': '55', 'type': 'attribute', 'children': ['56', '64']}; {'id': '56', 'type': 'call', 'children': ['57', '62']}; {'id': '57', 'type': 'attribute', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': '_cursor'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'execute'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'sql_query'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'fetchall'}; {'id': '65', 'type': 'argument_list', 'children': []}; {'id': '66', 'type': 'except_clause', 'children': ['67', '73']}; {'id': '67', 'type': 'as_pattern', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'sqlite'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'Error'}; {'id': '71', 'type': 'as_pattern_target', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'error_string'}; {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}; {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'warning'}; {'id': '79', 'type': 'argument_list', 'children': ['80', '81']}; {'id': '80', 'type': 'string', 'children': [], 'value': '"SQLite error %s"'}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'error_string'}; {'id': '82', 'type': 'return_statement', 'children': ['83']}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'results'}
|
Query the database file.
|
def translate(self):
varnames = set()
ident = self.ident
funcnames = set([ident])
arg_exprs = []
for arg in self.args:
subexprs, subvars, subfuncs = arg.translate()
varnames.update(subvars)
funcnames.update(subfuncs)
arg_exprs.append(ex_call(
ast.Attribute(ex_literal(u''), 'join', ast.Load()),
[ex_call(
'map',
[
ex_rvalue(str.__name__),
ast.List(subexprs, ast.Load()),
]
)],
))
subexpr_call = ex_call(
FUNCTION_PREFIX + ident,
arg_exprs
)
return [subexpr_call], varnames, funcnames
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'translate'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '12', '18', '26', '30', '108', '118']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'varnames'}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '11', 'type': 'argument_list', 'children': []}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'ident'}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'ident'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'funcnames'}; {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'list', 'children': ['25'], 'value': '[ident]'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ident'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'arg_exprs'}; {'id': '29', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '30', 'type': 'for_statement', 'children': ['31', '32', '35']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '35', 'type': 'block', 'children': ['36', '47', '54', '61']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}; {'id': '37', 'type': 'assignment', 'children': ['38', '42']}; {'id': '38', 'type': 'pattern_list', 'children': ['39', '40', '41']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'subexprs'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'subvars'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'subfuncs'}; {'id': '42', 'type': 'call', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'translate'}; {'id': '46', 'type': 'argument_list', 'children': []}; {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'varnames'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'subvars'}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}; {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'funcnames'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'subfuncs'}; {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'call', 'children': ['63', '66']}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'arg_exprs'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}; {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'ex_call'}; {'id': '69', 'type': 'argument_list', 'children': ['70', '85']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}; {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'ast'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'Attribute'}; {'id': '74', 'type': 'argument_list', 'children': ['75', '79', '80']}; {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'ex_literal'}; {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'string', 'children': [], 'value': "u''"}; {'id': '79', 'type': 'string', 'children': [], 'value': "'join'"}; {'id': '80', 'type': 'call', 'children': ['81', '84']}; {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'ast'}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'Load'}; {'id': '84', 'type': 'argument_list', 'children': []}; {'id': '85', 'type': 'list', 'children': ['86'], 'value': "[ex_call(\n 'map',\n [\n ex_rvalue(str.__name__),\n ast.List(subexprs, ast.Load()),\n ]\n )]"}; {'id': '86', 'type': 'call', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'ex_call'}; {'id': '88', 'type': 'argument_list', 'children': ['89', '90']}; {'id': '89', 'type': 'string', 'children': [], 'value': "'map'"}; {'id': '90', 'type': 'list', 'children': ['91', '97'], 'value': '[\n ex_rvalue(str.__name__),\n ast.List(subexprs, ast.Load()),\n ]'}; {'id': '91', 'type': 'call', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'ex_rvalue'}; {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'ast'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'List'}; {'id': '101', 'type': 'argument_list', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'subexprs'}; {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 'ast'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'Load'}; {'id': '107', 'type': 'argument_list', 'children': []}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}; {'id': '109', 'type': 'assignment', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'subexpr_call'}; {'id': '111', 'type': 'call', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'ex_call'}; {'id': '113', 'type': 'argument_list', 'children': ['114', '117']}; {'id': '114', 'type': 'binary_operator', 'children': ['115', '116'], 'value': '+'}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'FUNCTION_PREFIX'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'ident'}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'arg_exprs'}; {'id': '118', 'type': 'return_statement', 'children': ['119']}; {'id': '119', 'type': 'expression_list', 'children': ['120', '122', '123']}; {'id': '120', 'type': 'list', 'children': ['121'], 'value': '[subexpr_call]'}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'subexpr_call'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'varnames'}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'funcnames'}
|
Compile the function call.
|
def install_toolset(self, toolset):
info = toolset_info[toolset]
if sys.platform.startswith('linux'):
os.chdir(self.work_dir)
if 'ppa' in info:
for ppa in info['ppa']:
utils.check_call(
'sudo','add-apt-repository','--yes',ppa)
if 'deb' in info:
utils.make_file('sources.list',
"deb %s"%(' '.join(info['deb'])),
"deb-src %s"%(' '.join(info['deb'])))
utils.check_call('sudo','bash','-c','cat sources.list >> /etc/apt/sources.list')
if 'apt-key' in info:
for key in info['apt-key']:
utils.check_call('wget',key,'-O','apt.key')
utils.check_call('sudo','apt-key','add','apt.key')
utils.check_call(
'sudo','apt-get','update','-qq')
utils.check_call(
'sudo','apt-get','install','-qq',info['package'])
if 'debugpackage' in info and info['debugpackage']:
utils.check_call(
'sudo','apt-get','install','-qq',info['debugpackage'])
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'install_toolset'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'toolset'}; {'id': '6', 'type': 'block', 'children': ['7', '13']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '10', 'type': 'subscript', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'toolset_info'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'toolset'}; {'id': '13', 'type': 'if_statement', 'children': ['14', '22']}; {'id': '14', 'type': 'call', 'children': ['15', '20']}; {'id': '15', 'type': 'attribute', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'platform'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}; {'id': '21', 'type': 'string', 'children': [], 'value': "'linux'"}; {'id': '22', 'type': 'block', 'children': ['23', '32', '53', '97', '128', '138', '151']}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'chdir'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '36']}; {'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': 'in'}; {'id': '34', 'type': 'string', 'children': [], 'value': "'ppa'"}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '36', 'type': 'block', 'children': ['37']}; {'id': '37', 'type': 'for_statement', 'children': ['38', '39', '42']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ppa'}; {'id': '39', 'type': 'subscript', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '41', 'type': 'string', 'children': [], 'value': "'ppa'"}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '48']}; {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'check_call'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50', '51', '52']}; {'id': '49', 'type': 'string', 'children': [], 'value': "'sudo'"}; {'id': '50', 'type': 'string', 'children': [], 'value': "'add-apt-repository'"}; {'id': '51', 'type': 'string', 'children': [], 'value': "'--yes'"}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'ppa'}; {'id': '53', 'type': 'if_statement', 'children': ['54', '57']}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '56'], 'value': 'in'}; {'id': '55', 'type': 'string', 'children': [], 'value': "'deb'"}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '57', 'type': 'block', 'children': ['58', '87']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}; {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'make_file'}; {'id': '63', 'type': 'argument_list', 'children': ['64', '65', '76']}; {'id': '64', 'type': 'string', 'children': [], 'value': "'sources.list'"}; {'id': '65', 'type': 'binary_operator', 'children': ['66', '67'], 'value': '%'}; {'id': '66', 'type': 'string', 'children': [], 'value': '"deb %s"'}; {'id': '67', 'type': '()', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '72']}; {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}; {'id': '73', 'type': 'subscript', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '75', 'type': 'string', 'children': [], 'value': "'deb'"}; {'id': '76', 'type': 'binary_operator', 'children': ['77', '78'], 'value': '%'}; {'id': '77', 'type': 'string', 'children': [], 'value': '"deb-src %s"'}; {'id': '78', 'type': '()', 'children': ['79']}; {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}; {'id': '81', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'subscript', 'children': ['85', '86']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '86', 'type': 'string', 'children': [], 'value': "'deb'"}; {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}; {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'check_call'}; {'id': '92', 'type': 'argument_list', 'children': ['93', '94', '95', '96']}; {'id': '93', 'type': 'string', 'children': [], 'value': "'sudo'"}; {'id': '94', 'type': 'string', 'children': [], 'value': "'bash'"}; {'id': '95', 'type': 'string', 'children': [], 'value': "'-c'"}; {'id': '96', 'type': 'string', 'children': [], 'value': "'cat sources.list >> /etc/apt/sources.list'"}; {'id': '97', 'type': 'if_statement', 'children': ['98', '101']}; {'id': '98', 'type': 'comparison_operator', 'children': ['99', '100'], 'value': 'in'}; {'id': '99', 'type': 'string', 'children': [], 'value': "'apt-key'"}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '101', 'type': 'block', 'children': ['102']}; {'id': '102', 'type': 'for_statement', 'children': ['103', '104', '107']}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '104', 'type': 'subscript', 'children': ['105', '106']}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '106', 'type': 'string', 'children': [], 'value': "'apt-key'"}; {'id': '107', 'type': 'block', 'children': ['108', '118']}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}; {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'check_call'}; {'id': '113', 'type': 'argument_list', 'children': ['114', '115', '116', '117']}; {'id': '114', 'type': 'string', 'children': [], 'value': "'wget'"}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '116', 'type': 'string', 'children': [], 'value': "'-O'"}; {'id': '117', 'type': 'string', 'children': [], 'value': "'apt.key'"}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}; {'id': '119', 'type': 'call', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'check_call'}; {'id': '123', 'type': 'argument_list', 'children': ['124', '125', '126', '127']}; {'id': '124', 'type': 'string', 'children': [], 'value': "'sudo'"}; {'id': '125', 'type': 'string', 'children': [], 'value': "'apt-key'"}; {'id': '126', 'type': 'string', 'children': [], 'value': "'add'"}; {'id': '127', 'type': 'string', 'children': [], 'value': "'apt.key'"}; {'id': '128', 'type': 'expression_statement', 'children': ['129']}; {'id': '129', 'type': 'call', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}; {'id': '131', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'check_call'}; {'id': '133', 'type': 'argument_list', 'children': ['134', '135', '136', '137']}; {'id': '134', 'type': 'string', 'children': [], 'value': "'sudo'"}; {'id': '135', 'type': 'string', 'children': [], 'value': "'apt-get'"}; {'id': '136', 'type': 'string', 'children': [], 'value': "'update'"}; {'id': '137', 'type': 'string', 'children': [], 'value': "'-qq'"}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}; {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}; {'id': '141', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'check_call'}; {'id': '143', 'type': 'argument_list', 'children': ['144', '145', '146', '147', '148']}; {'id': '144', 'type': 'string', 'children': [], 'value': "'sudo'"}; {'id': '145', 'type': 'string', 'children': [], 'value': "'apt-get'"}; {'id': '146', 'type': 'string', 'children': [], 'value': "'install'"}; {'id': '147', 'type': 'string', 'children': [], 'value': "'-qq'"}; {'id': '148', 'type': 'subscript', 'children': ['149', '150']}; {'id': '149', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '150', 'type': 'string', 'children': [], 'value': "'package'"}; {'id': '151', 'type': 'if_statement', 'children': ['152', '159']}; {'id': '152', 'type': 'boolean_operator', 'children': ['153', '156'], 'value': 'and'}; {'id': '153', 'type': 'comparison_operator', 'children': ['154', '155'], 'value': 'in'}; {'id': '154', 'type': 'string', 'children': [], 'value': "'debugpackage'"}; {'id': '155', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '156', 'type': 'subscript', 'children': ['157', '158']}; {'id': '157', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '158', 'type': 'string', 'children': [], 'value': "'debugpackage'"}; {'id': '159', 'type': 'block', 'children': ['160']}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}; {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}; {'id': '163', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'check_call'}; {'id': '165', 'type': 'argument_list', 'children': ['166', '167', '168', '169', '170']}; {'id': '166', 'type': 'string', 'children': [], 'value': "'sudo'"}; {'id': '167', 'type': 'string', 'children': [], 'value': "'apt-get'"}; {'id': '168', 'type': 'string', 'children': [], 'value': "'install'"}; {'id': '169', 'type': 'string', 'children': [], 'value': "'-qq'"}; {'id': '170', 'type': 'subscript', 'children': ['171', '172']}; {'id': '171', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '172', 'type': 'string', 'children': [], 'value': "'debugpackage'"}
|
Installs specific toolset on CI system.
|
def _get_default_router(self, routers, router_name=None):
if router_name is None:
for router in routers:
if router['id'] is not None:
return router['id']
else:
for router in routers:
if router['hostname'] == router_name:
return router['id']
raise SoftLayer.SoftLayerError("Could not find valid default router")
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_default_router'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'routers'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'router_name'}; {'id': '8', 'type': 'None', 'children': []}; {'id': '9', 'type': 'block', 'children': ['10', '47']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '14', '30']}; {'id': '11', 'type': 'comparison_operator', 'children': ['12', '13'], 'value': 'is'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'router_name'}; {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15']}; {'id': '15', 'type': 'for_statement', 'children': ['16', '17', '18']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'routers'}; {'id': '18', 'type': 'block', 'children': ['19']}; {'id': '19', 'type': 'if_statement', 'children': ['20', '25']}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '24'], 'value': 'is not'}; {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '23', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '24', 'type': 'None', 'children': []}; {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'return_statement', 'children': ['27']}; {'id': '27', 'type': 'subscript', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '29', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '30', 'type': 'else_clause', 'children': ['31']}; {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'for_statement', 'children': ['33', '34', '35']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'routers'}; {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'if_statement', 'children': ['37', '42']}; {'id': '37', 'type': 'comparison_operator', 'children': ['38', '41'], 'value': '=='}; {'id': '38', 'type': 'subscript', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'hostname'"}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'router_name'}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'return_statement', 'children': ['44']}; {'id': '44', 'type': 'subscript', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '46', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '47', 'type': 'raise_statement', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'SoftLayer'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'SoftLayerError'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}; {'id': '53', 'type': 'string', 'children': [], 'value': '"Could not find valid default router"'}
|
Returns the default router for ordering a dedicated host.
|
def isInside(self, point, tol=0.0001):
poly = self.polydata(True)
points = vtk.vtkPoints()
points.InsertNextPoint(point)
pointsPolydata = vtk.vtkPolyData()
pointsPolydata.SetPoints(points)
sep = vtk.vtkSelectEnclosedPoints()
sep.SetTolerance(tol)
sep.CheckSurfaceOff()
sep.SetInputData(pointsPolydata)
sep.SetSurfaceData(poly)
sep.Update()
return sep.IsInside(0)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'isInside'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'point'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'tol'}; {'id': '8', 'type': 'float', 'children': [], 'value': '0.0001'}; {'id': '9', 'type': 'block', 'children': ['10', '19', '27', '34', '42', '49', '57', '64', '70', '77', '84', '90']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'poly'}; {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'polydata'}; {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'True', 'children': []}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'points'}; {'id': '22', 'type': 'call', 'children': ['23', '26']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'vtk'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'vtkPoints'}; {'id': '26', 'type': 'argument_list', 'children': []}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'points'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'InsertNextPoint'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'point'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}; {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'pointsPolydata'}; {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'vtk'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'vtkPolyData'}; {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}; {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'pointsPolydata'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'SetPoints'}; {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'points'}; {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'vtk'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'vtkSelectEnclosedPoints'}; {'id': '56', 'type': 'argument_list', 'children': []}; {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '62']}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'SetTolerance'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'tol'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}; {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'CheckSurfaceOff'}; {'id': '69', 'type': 'argument_list', 'children': []}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}; {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'SetInputData'}; {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'pointsPolydata'}; {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '82']}; {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'SetSurfaceData'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'poly'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}; {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'Update'}; {'id': '89', 'type': 'argument_list', 'children': []}; {'id': '90', 'type': 'return_statement', 'children': ['91']}; {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'IsInside'}; {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'integer', 'children': [], 'value': '0'}
|
Return True if point is inside a polydata closed surface.
|
def _create_table_xml_file(self, data, fname=None):
content = self._xml_pretty_print(data)
if not fname:
fname = self.name
with open(fname+".xml", 'w') as f:
f.write(content)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_create_table_xml_file'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'fname'}; {'id': '8', 'type': 'None', 'children': []}; {'id': '9', 'type': 'block', 'children': ['10', '19', '29']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': '_xml_pretty_print'}; {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '19', 'type': 'if_statement', 'children': ['20', '22']}; {'id': '20', 'type': 'not_operator', 'children': ['21']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'fname'}; {'id': '22', 'type': 'block', 'children': ['23']}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'fname'}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '29', 'type': 'with_statement', 'children': ['30', '42']}; {'id': '30', 'type': 'with_clause', 'children': ['31']}; {'id': '31', 'type': 'with_item', 'children': ['32']}; {'id': '32', 'type': 'as_pattern', 'children': ['33', '40']}; {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '35', 'type': 'argument_list', 'children': ['36', '39']}; {'id': '36', 'type': 'binary_operator', 'children': ['37', '38'], 'value': '+'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'fname'}; {'id': '38', 'type': 'string', 'children': [], 'value': '".xml"'}; {'id': '39', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '40', 'type': 'as_pattern_target', 'children': ['41']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '48']}; {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'content'}
|
Creates a xml file of the table
|
def _include_term_list(self, termlist):
ref_needed = False
for term in termlist:
ref_needed = ref_needed or self._include_term(term)
return ref_needed
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_include_term_list'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'termlist'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '26']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ref_needed'}; {'id': '10', 'type': 'False', 'children': []}; {'id': '11', 'type': 'for_statement', 'children': ['12', '13', '14']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'term'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'termlist'}; {'id': '14', 'type': 'block', 'children': ['15']}; {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'ref_needed'}; {'id': '18', 'type': 'boolean_operator', 'children': ['19', '20'], 'value': 'or'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'ref_needed'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': '_include_term'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'term'}; {'id': '26', 'type': 'return_statement', 'children': ['27']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'ref_needed'}
|
Add terms from a TermList to the ontology.
|
def setup_apiv2():
if sys.version_info[0] == 2:
logging.getLogger(__name__).debug(
'setting up SIP API to version 2')
import sip
try:
sip.setapi("QString", 2)
sip.setapi("QVariant", 2)
except ValueError:
logging.getLogger(__name__).critical(
"failed to set up sip api to version 2 for PyQt4")
raise ImportError('PyQt4')
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'setup_apiv2'}; {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5']}; {'id': '5', 'type': 'if_statement', 'children': ['6', '13']}; {'id': '6', 'type': 'comparison_operator', 'children': ['7', '12'], 'value': '=='}; {'id': '7', 'type': 'subscript', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'version_info'}; {'id': '11', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '12', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '13', 'type': 'block', 'children': ['14', '26', '29']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'call', 'children': ['16', '24']}; {'id': '16', 'type': 'attribute', 'children': ['17', '23']}; {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'getLogger'}; {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'string', 'children': [], 'value': "'setting up SIP API to version 2'"}; {'id': '26', 'type': 'import_statement', 'children': ['27']}; {'id': '27', 'type': 'dotted_name', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'sip'}; {'id': '29', 'type': 'try_statement', 'children': ['30', '47']}; {'id': '30', 'type': 'block', 'children': ['31', '39']}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'sip'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'setapi'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38']}; {'id': '37', 'type': 'string', 'children': [], 'value': '"QString"'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '44']}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'sip'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'setapi'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46']}; {'id': '45', 'type': 'string', 'children': [], 'value': '"QVariant"'}; {'id': '46', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '47', 'type': 'except_clause', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '49', 'type': 'block', 'children': ['50', '62']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}; {'id': '51', 'type': 'call', 'children': ['52', '60']}; {'id': '52', 'type': 'attribute', 'children': ['53', '59']}; {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'getLogger'}; {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'critical'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}; {'id': '61', 'type': 'string', 'children': [], 'value': '"failed to set up sip api to version 2 for PyQt4"'}; {'id': '62', 'type': 'raise_statement', 'children': ['63']}; {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'ImportError'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'string', 'children': [], 'value': "'PyQt4'"}
|
Setup apiv2 when using PyQt4 and Python2.
|
def move_up(self):
self.at(ardrone.at.pcmd, True, 0, 0, self.speed, 0)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'move_up'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'at'}; {'id': '11', 'type': 'argument_list', 'children': ['12', '17', '18', '19', '20', '23']}; {'id': '12', 'type': 'attribute', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'ardrone'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'at'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'pcmd'}; {'id': '17', 'type': 'True', 'children': []}; {'id': '18', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '19', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'speed'}; {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}
|
Make the drone rise upwards.
|
def config(self):
if self.__config is None:
config_path = self.locate_config()
if config_path:
self.__config = self.read_file(config_path)
self.__config_path = config_path
return self.__config
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'config'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '41']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '12']}; {'id': '7', 'type': 'comparison_operator', 'children': ['8', '11'], 'value': 'is'}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': '__config'}; {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'block', 'children': ['13', '21']}; {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'config_path'}; {'id': '16', 'type': 'call', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'locate_config'}; {'id': '20', 'type': 'argument_list', 'children': []}; {'id': '21', 'type': 'if_statement', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'config_path'}; {'id': '23', 'type': 'block', 'children': ['24', '35']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}; {'id': '25', 'type': 'assignment', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '__config'}; {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'read_file'}; {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'config_path'}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': '__config_path'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'config_path'}; {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '__config'}
|
Read config automatically if required
|
def _update_wikidata(self):
claims = self.data['claims']
for ent in claims:
plabel = self.data['labels'].get(ent)
if plabel:
plabel = "%s (%s)" % (plabel, ent)
claim = []
for item in claims[ent]:
ilabel = item
if utils.is_text(item) and re.match(r'^Q\d+$', item):
ilabel = self.data['labels'].get(item)
if ilabel:
ilabel = "%s (%s)" % (ilabel, item)
if len(claims[ent]) == 1:
claim = ilabel
else:
claim.append(ilabel)
if plabel and ilabel:
self.data['wikidata'][plabel] = claim
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_update_wikidata'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '14']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'claims'}; {'id': '9', 'type': 'subscript', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '13', 'type': 'string', 'children': [], 'value': "'claims'"}; {'id': '14', 'type': 'for_statement', 'children': ['15', '16', '17']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'ent'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'claims'}; {'id': '17', 'type': 'block', 'children': ['18', '31', '42', '46', '119']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'plabel'}; {'id': '21', 'type': 'call', 'children': ['22', '29']}; {'id': '22', 'type': 'attribute', 'children': ['23', '28']}; {'id': '23', 'type': 'subscript', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '27', 'type': 'string', 'children': [], 'value': "'labels'"}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'ent'}; {'id': '31', 'type': 'if_statement', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'plabel'}; {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}; {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'plabel'}; {'id': '37', 'type': 'binary_operator', 'children': ['38', '39'], 'value': '%'}; {'id': '38', 'type': 'string', 'children': [], 'value': '"%s (%s)"'}; {'id': '39', 'type': 'tuple', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'plabel'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'ent'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}; {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'claim'}; {'id': '45', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '46', 'type': 'for_statement', 'children': ['47', '48', '51']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '48', 'type': 'subscript', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'claims'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'ent'}; {'id': '51', 'type': 'block', 'children': ['52', '56', '96']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}; {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ilabel'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '56', 'type': 'if_statement', 'children': ['57', '71']}; {'id': '57', 'type': 'boolean_operator', 'children': ['58', '64'], 'value': 'and'}; {'id': '58', 'type': 'call', 'children': ['59', '62']}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'is_text'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '64', 'type': 'call', 'children': ['65', '68']}; {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '68', 'type': 'argument_list', 'children': ['69', '70']}; {'id': '69', 'type': 'string', 'children': [], 'value': "r'^Q\\d+$'"}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '71', 'type': 'block', 'children': ['72', '85']}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}; {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'ilabel'}; {'id': '75', 'type': 'call', 'children': ['76', '83']}; {'id': '76', 'type': 'attribute', 'children': ['77', '82']}; {'id': '77', 'type': 'subscript', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '81', 'type': 'string', 'children': [], 'value': "'labels'"}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '85', 'type': 'if_statement', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'ilabel'}; {'id': '87', 'type': 'block', 'children': ['88']}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}; {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'ilabel'}; {'id': '91', 'type': 'binary_operator', 'children': ['92', '93'], 'value': '%'}; {'id': '92', 'type': 'string', 'children': [], 'value': '"%s (%s)"'}; {'id': '93', 'type': 'tuple', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'ilabel'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '96', 'type': 'if_statement', 'children': ['97', '105', '110']}; {'id': '97', 'type': 'comparison_operator', 'children': ['98', '104'], 'value': '=='}; {'id': '98', 'type': 'call', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}; {'id': '101', 'type': 'subscript', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'claims'}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'ent'}; {'id': '104', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}; {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'claim'}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'ilabel'}; {'id': '110', 'type': 'else_clause', 'children': ['111']}; {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}; {'id': '113', 'type': 'call', 'children': ['114', '117']}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'claim'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'ilabel'}; {'id': '119', 'type': 'if_statement', 'children': ['120', '123']}; {'id': '120', 'type': 'boolean_operator', 'children': ['121', '122'], 'value': 'and'}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'plabel'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'ilabel'}; {'id': '123', 'type': 'block', 'children': ['124']}; {'id': '124', 'type': 'expression_statement', 'children': ['125']}; {'id': '125', 'type': 'assignment', 'children': ['126', '133']}; {'id': '126', 'type': 'subscript', 'children': ['127', '132']}; {'id': '127', 'type': 'subscript', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}; {'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '131', 'type': 'string', 'children': [], 'value': "'wikidata'"}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'plabel'}; {'id': '133', 'type': 'identifier', 'children': [], 'value': 'claim'}
|
set wikidata from claims and labels
|
def callback(self):
try:
return self._callback()
except:
s = straceback()
self.exceptions.append(s)
self.shutdown(msg="Exception raised in callback!\n" + s)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'callback'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'try_statement', 'children': ['7', '14']}; {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'return_statement', 'children': ['9']}; {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': '_callback'}; {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'except_clause', 'children': ['15']}; {'id': '15', 'type': 'block', 'children': ['16', '22', '31']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'straceback'}; {'id': '21', 'type': 'argument_list', 'children': []}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'call', 'children': ['24', '29']}; {'id': '24', 'type': 'attribute', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'exceptions'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'shutdown'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '39', 'type': 'binary_operator', 'children': ['40', '41'], 'value': '+'}; {'id': '40', 'type': 'string', 'children': [], 'value': '"Exception raised in callback!\\n"'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 's'}
|
The function that will be executed by the scheduler.
|
def start(self):
if self.mode == MODE_PRIMARY:
i = self._start()
else:
i = self._connect()
self.manager = i
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'start'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '31']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '12', '21']}; {'id': '7', 'type': 'comparison_operator', 'children': ['8', '11'], 'value': '=='}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'MODE_PRIMARY'}; {'id': '12', 'type': 'block', 'children': ['13']}; {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '16', 'type': 'call', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': '_start'}; {'id': '20', 'type': 'argument_list', 'children': []}; {'id': '21', 'type': 'else_clause', 'children': ['22']}; {'id': '22', 'type': 'block', 'children': ['23']}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': '_connect'}; {'id': '30', 'type': 'argument_list', 'children': []}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'manager'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'i'}
|
Starts or connects to the manager.
|
def sync_sources(self, force=False):
from ambry.orm.file import File
self.dstate = self.STATES.BUILDING
synced = 0
for fc in [File.BSFILE.SOURCES]:
bsf = self.build_source_files.file(fc)
if bsf.fs_is_newer or force:
self.log('Syncing {}'.format(bsf.file_name))
bsf.fs_to_objects()
synced += 1
return synced
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sync_sources'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'force'}; {'id': '7', 'type': 'False', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '16', '26', '30', '81']}; {'id': '9', 'type': 'import_from_statement', 'children': ['10', '14']}; {'id': '10', 'type': 'dotted_name', 'children': ['11', '12', '13']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'ambry'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'orm'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '14', 'type': 'dotted_name', 'children': ['15']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'File'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'dstate'}; {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'STATES'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'BUILDING'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'synced'}; {'id': '29', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '30', 'type': 'for_statement', 'children': ['31', '32', '38']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'fc'}; {'id': '32', 'type': 'list', 'children': ['33'], 'value': '[File.BSFILE.SOURCES]'}; {'id': '33', 'type': 'attribute', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'File'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'BSFILE'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'SOURCES'}; {'id': '38', 'type': 'block', 'children': ['39', '50']}; {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'bsf'}; {'id': '42', 'type': 'call', 'children': ['43', '48']}; {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'build_source_files'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'fc'}; {'id': '50', 'type': 'if_statement', 'children': ['51', '56']}; {'id': '51', 'type': 'boolean_operator', 'children': ['52', '55'], 'value': 'or'}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'bsf'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'fs_is_newer'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'force'}; {'id': '56', 'type': 'block', 'children': ['57', '71', '77']}; {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '62']}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}; {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}; {'id': '65', 'type': 'string', 'children': [], 'value': "'Syncing {}'"}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'bsf'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'file_name'}; {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}; {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'bsf'}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'fs_to_objects'}; {'id': '76', 'type': 'argument_list', 'children': []}; {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'augmented_assignment', 'children': ['79', '80'], 'value': '+='}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'synced'}; {'id': '80', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '81', 'type': 'return_statement', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'synced'}
|
Sync in only the sources.csv file
|
def _init_lazy_fields(self):
self.gtf_path = None
self._protein_sequences = None
self._transcript_sequences = None
self._db = None
self.protein_fasta_paths = None
self.transcript_fasta_paths = None
self._genes = {}
self._transcripts = {}
self._exons = {}
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_init_lazy_fields'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '12', '18', '24', '30', '36', '42', '48', '54']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'gtf_path'}; {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'assignment', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': '_protein_sequences'}; {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': '_transcript_sequences'}; {'id': '23', 'type': 'None', 'children': []}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}; {'id': '25', 'type': 'assignment', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '_db'}; {'id': '29', 'type': 'None', 'children': []}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'assignment', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'protein_fasta_paths'}; {'id': '35', 'type': 'None', 'children': []}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}; {'id': '37', 'type': 'assignment', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'transcript_fasta_paths'}; {'id': '41', 'type': 'None', 'children': []}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}; {'id': '43', 'type': 'assignment', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': '_genes'}; {'id': '47', 'type': 'dictionary', 'children': []}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}; {'id': '49', 'type': 'assignment', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '_transcripts'}; {'id': '53', 'type': 'dictionary', 'children': []}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}; {'id': '55', 'type': 'assignment', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': '_exons'}; {'id': '59', 'type': 'dictionary', 'children': []}
|
Member data that gets loaded or constructed on demand
|
def create_app_from_yml(path):
try:
with open(path, "rt", encoding="UTF-8") as f:
try:
interpolated = io.StringIO(f.read() % {
"here": os.path.abspath(os.path.dirname(path))})
interpolated.name = f.name
conf = yaml.safe_load(interpolated)
except yaml.YAMLError as exc:
raise RuntimeError(
"Cannot parse a configuration file. Context: " + str(exc))
except FileNotFoundError:
conf = {"metadata": None, "pipes": {}}
return core.create_app(conf["metadata"], pipes=conf["pipes"])
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_app_from_yml'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '5', 'type': 'block', 'children': ['6', '105']}; {'id': '6', 'type': 'try_statement', 'children': ['7', '92']}; {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'with_statement', 'children': ['9', '22']}; {'id': '9', 'type': 'with_clause', 'children': ['10']}; {'id': '10', 'type': 'with_item', 'children': ['11']}; {'id': '11', 'type': 'as_pattern', 'children': ['12', '20']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16', '17']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '16', 'type': 'string', 'children': [], 'value': '"rt"'}; {'id': '17', 'type': 'keyword_argument', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'encoding'}; {'id': '19', 'type': 'string', 'children': [], 'value': '"UTF-8"'}; {'id': '20', 'type': 'as_pattern_target', 'children': ['21']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '22', 'type': 'block', 'children': ['23']}; {'id': '23', 'type': 'try_statement', 'children': ['24', '74']}; {'id': '24', 'type': 'block', 'children': ['25', '57', '65']}; {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'interpolated'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'io'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'StringIO'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}; {'id': '33', 'type': 'binary_operator', 'children': ['34', '39'], 'value': '%'}; {'id': '34', 'type': 'call', 'children': ['35', '38']}; {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '38', 'type': 'argument_list', 'children': []}; {'id': '39', 'type': 'dictionary', 'children': ['40']}; {'id': '40', 'type': 'pair', 'children': ['41', '42']}; {'id': '41', 'type': 'string', 'children': [], 'value': '"here"'}; {'id': '42', 'type': 'call', 'children': ['43', '48']}; {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'abspath'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}; {'id': '49', 'type': 'call', 'children': ['50', '55']}; {'id': '50', 'type': 'attribute', 'children': ['51', '54']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'dirname'}; {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '62']}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'interpolated'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '68', 'type': 'call', 'children': ['69', '72']}; {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'yaml'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'safe_load'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'interpolated'}; {'id': '74', 'type': 'except_clause', 'children': ['75', '81']}; {'id': '75', 'type': 'as_pattern', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'yaml'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'YAMLError'}; {'id': '79', 'type': 'as_pattern_target', 'children': ['80']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'exc'}; {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'raise_statement', 'children': ['83']}; {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}; {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'binary_operator', 'children': ['87', '88'], 'value': '+'}; {'id': '87', 'type': 'string', 'children': [], 'value': '"Cannot parse a configuration file. Context: "'}; {'id': '88', 'type': 'call', 'children': ['89', '90']}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'exc'}; {'id': '92', 'type': 'except_clause', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'FileNotFoundError'}; {'id': '94', 'type': 'block', 'children': ['95']}; {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'assignment', 'children': ['97', '98']}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '98', 'type': 'dictionary', 'children': ['99', '102']}; {'id': '99', 'type': 'pair', 'children': ['100', '101']}; {'id': '100', 'type': 'string', 'children': [], 'value': '"metadata"'}; {'id': '101', 'type': 'None', 'children': []}; {'id': '102', 'type': 'pair', 'children': ['103', '104']}; {'id': '103', 'type': 'string', 'children': [], 'value': '"pipes"'}; {'id': '104', 'type': 'dictionary', 'children': []}; {'id': '105', 'type': 'return_statement', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '110']}; {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'core'}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'create_app'}; {'id': '110', 'type': 'argument_list', 'children': ['111', '114']}; {'id': '111', 'type': 'subscript', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '113', 'type': 'string', 'children': [], 'value': '"metadata"'}; {'id': '114', 'type': 'keyword_argument', 'children': ['115', '116']}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'pipes'}; {'id': '116', 'type': 'subscript', 'children': ['117', '118']}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '118', 'type': 'string', 'children': [], 'value': '"pipes"'}
|
Return an application instance created from YAML.
|
def freeze(obj):
if isinstance(obj, dict):
return ImmutableDict(obj)
if isinstance(obj, list):
return ImmutableList(obj)
if isinstance(obj, set):
return ImmutableSet(obj)
return obj
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'freeze'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '5', 'type': 'block', 'children': ['6', '18', '30', '42']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '12']}; {'id': '7', 'type': 'call', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '9', 'type': 'argument_list', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '12', 'type': 'block', 'children': ['13']}; {'id': '13', 'type': 'return_statement', 'children': ['14']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'ImmutableDict'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '18', 'type': 'if_statement', 'children': ['19', '24']}; {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '21', 'type': 'argument_list', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '24', 'type': 'block', 'children': ['25']}; {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'ImmutableList'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '30', 'type': 'if_statement', 'children': ['31', '36']}; {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '33', 'type': 'argument_list', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '36', 'type': 'block', 'children': ['37']}; {'id': '37', 'type': 'return_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'ImmutableSet'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '42', 'type': 'return_statement', 'children': ['43']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'obj'}
|
Freeze python types by turning them into immutable structures.
|
def _notify_subnet_create(resource, event, trigger, **kwargs):
context = kwargs['context']
subnet = kwargs['subnet']
l3plugin = bc.get_plugin(L3_ROUTER_NAT)
for router in l3plugin.get_routers(context):
if (router['external_gateway_info'] and
(router['external_gateway_info']['network_id'] ==
subnet['network_id'])):
router_data = {'router': router}
l3plugin.update_router(context, router['id'], router_data)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_notify_subnet_create'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'resource'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'trigger'}; {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '9', 'type': 'block', 'children': ['10', '16', '22', '31']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '13', 'type': 'subscript', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '15', 'type': 'string', 'children': [], 'value': "'context'"}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'subnet'}; {'id': '19', 'type': 'subscript', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '21', 'type': 'string', 'children': [], 'value': "'subnet'"}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'l3plugin'}; {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'bc'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'get_plugin'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'L3_ROUTER_NAT'}; {'id': '31', 'type': 'for_statement', 'children': ['32', '33', '39']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'l3plugin'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'get_routers'}; {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'if_statement', 'children': ['41', '56']}; {'id': '41', 'type': '()', 'children': ['42']}; {'id': '42', 'type': 'boolean_operator', 'children': ['43', '46'], 'value': 'and'}; {'id': '43', 'type': 'subscript', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '45', 'type': 'string', 'children': [], 'value': "'external_gateway_info'"}; {'id': '46', 'type': '()', 'children': ['47']}; {'id': '47', 'type': 'comparison_operator', 'children': ['48', '53'], 'value': '=='}; {'id': '48', 'type': 'subscript', 'children': ['49', '52']}; {'id': '49', 'type': 'subscript', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '51', 'type': 'string', 'children': [], 'value': "'external_gateway_info'"}; {'id': '52', 'type': 'string', 'children': [], 'value': "'network_id'"}; {'id': '53', 'type': 'subscript', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'subnet'}; {'id': '55', 'type': 'string', 'children': [], 'value': "'network_id'"}; {'id': '56', 'type': 'block', 'children': ['57', '64']}; {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'router_data'}; {'id': '60', 'type': 'dictionary', 'children': ['61']}; {'id': '61', 'type': 'pair', 'children': ['62', '63']}; {'id': '62', 'type': 'string', 'children': [], 'value': "'router'"}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}; {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'l3plugin'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'update_router'}; {'id': '69', 'type': 'argument_list', 'children': ['70', '71', '74']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '71', 'type': 'subscript', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'router'}; {'id': '73', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'router_data'}
|
Called when a new subnet is created in the external network
|
def _get_tags_and_content(self, content: str) -> typing.Tuple[str, str]:
content_lines = content.split('\n')
tag_lines = []
if content_lines[0] != '---':
return '', content
content_lines.pop(0)
for line in content_lines:
if line in ('---', '...'):
content_starts_at = content_lines.index(line) + 1
content_lines = content_lines[content_starts_at:]
break
tag_lines.append(line)
return '\n'.join(tag_lines), '\n'.join(content_lines)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9', '16']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_tags_and_content'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'typed_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '7', 'type': 'type', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '9', 'type': 'type', 'children': ['10']}; {'id': '10', 'type': 'subscript', 'children': ['11', '14', '15']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'typing'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'Tuple'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '16', 'type': 'block', 'children': ['17', '26', '30', '41', '48', '86']}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'content_lines'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'tag_lines'}; {'id': '29', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '30', 'type': 'if_statement', 'children': ['31', '36']}; {'id': '31', 'type': 'comparison_operator', 'children': ['32', '35'], 'value': '!='}; {'id': '32', 'type': 'subscript', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'content_lines'}; {'id': '34', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '35', 'type': 'string', 'children': [], 'value': "'---'"}; {'id': '36', 'type': 'block', 'children': ['37']}; {'id': '37', 'type': 'return_statement', 'children': ['38']}; {'id': '38', 'type': 'expression_list', 'children': ['39', '40']}; {'id': '39', 'type': 'string', 'children': [], 'value': "''"}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'content_lines'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}; {'id': '47', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '48', 'type': 'for_statement', 'children': ['49', '50', '51']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'content_lines'}; {'id': '51', 'type': 'block', 'children': ['52', '79']}; {'id': '52', 'type': 'if_statement', 'children': ['53', '58']}; {'id': '53', 'type': 'comparison_operator', 'children': ['54', '55'], 'value': 'in'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '55', 'type': 'tuple', 'children': ['56', '57']}; {'id': '56', 'type': 'string', 'children': [], 'value': "'---'"}; {'id': '57', 'type': 'string', 'children': [], 'value': "'...'"}; {'id': '58', 'type': 'block', 'children': ['59', '70', '78']}; {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'content_starts_at'}; {'id': '62', 'type': 'binary_operator', 'children': ['63', '69'], 'value': '+'}; {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'content_lines'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '69', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}; {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'content_lines'}; {'id': '73', 'type': 'subscript', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'content_lines'}; {'id': '75', 'type': 'slice', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'content_starts_at'}; {'id': '77', 'type': 'colon', 'children': []}; {'id': '78', 'type': 'break_statement', 'children': []}; {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '84']}; {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'tag_lines'}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '86', 'type': 'return_statement', 'children': ['87']}; {'id': '87', 'type': 'expression_list', 'children': ['88', '94']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}; {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'tag_lines'}; {'id': '94', 'type': 'call', 'children': ['95', '98']}; {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'content_lines'}
|
Splits content into two string - tags part and another content.
|
def copy_attr(f1, f2):
copyit = lambda x: not hasattr(f2, x) and x[:10] == 'PACKAGING_'
if f1._tags:
pattrs = [tag for tag in f1._tags if copyit(tag)]
for attr in pattrs:
f2.Tag(attr, f1.GetTag(attr))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'copy_attr'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'f1'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'f2'}; {'id': '6', 'type': 'block', 'children': ['7', '27']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'copyit'}; {'id': '10', 'type': 'lambda', 'children': ['11', '13']}; {'id': '11', 'type': 'lambda_parameters', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '13', 'type': 'boolean_operator', 'children': ['14', '20'], 'value': 'and'}; {'id': '14', 'type': 'not_operator', 'children': ['15']}; {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'f2'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '26'], 'value': '=='}; {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '23', 'type': 'slice', 'children': ['24', '25']}; {'id': '24', 'type': 'colon', 'children': []}; {'id': '25', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'PACKAGING_'"}; {'id': '27', 'type': 'if_statement', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'f1'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_tags'}; {'id': '31', 'type': 'block', 'children': ['32', '47']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}; {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'pattrs'}; {'id': '35', 'type': 'list_comprehension', 'children': ['36', '37', '42']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '37', 'type': 'for_in_clause', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'f1'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': '_tags'}; {'id': '42', 'type': 'if_clause', 'children': ['43']}; {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'copyit'}; {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '47', 'type': 'for_statement', 'children': ['48', '49', '50']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'pattrs'}; {'id': '50', 'type': 'block', 'children': ['51']}; {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '56']}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'f2'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'Tag'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '58', 'type': 'call', 'children': ['59', '62']}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'f1'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'GetTag'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'attr'}
|
copies the special packaging file attributes from f1 to f2.
|
async def _receive(self, stream_id, pp_id, data):
await self._data_channel_receive(stream_id, pp_id, data)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_receive'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'stream_id'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'pp_id'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '8', 'type': 'block', 'children': ['9']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'await', 'children': ['11']}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_data_channel_receive'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '17', '18']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'stream_id'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'pp_id'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'data'}
|
Receive data stream -> ULP.
|
def exec_then_eval(code, namespace=None):
namespace = namespace or {}
block = ast.parse(code, mode='exec')
last = ast.Expression(block.body.pop().value)
exec(compile(block, '<string>', mode='exec'), namespace)
return eval(compile(last, '<string>', mode='eval'), namespace)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'exec_then_eval'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '15', '27', '44', '57']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '12', 'type': 'boolean_operator', 'children': ['13', '14'], 'value': 'or'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '14', 'type': 'dictionary', 'children': []}; {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'block'}; {'id': '18', 'type': 'call', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'ast'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'parse'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'exec'"}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'last'}; {'id': '30', 'type': 'call', 'children': ['31', '34']}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ast'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'Expression'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}; {'id': '35', 'type': 'attribute', 'children': ['36', '43']}; {'id': '36', 'type': 'call', 'children': ['37', '42']}; {'id': '37', 'type': 'attribute', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'block'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '42', 'type': 'argument_list', 'children': []}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}; {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'exec'}; {'id': '47', 'type': 'argument_list', 'children': ['48', '56']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'compile'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52', '53']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'block'}; {'id': '52', 'type': 'string', 'children': [], 'value': "'<string>'"}; {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '55', 'type': 'string', 'children': [], 'value': "'exec'"}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '57', 'type': 'return_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'eval'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '69']}; {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'compile'}; {'id': '63', 'type': 'argument_list', 'children': ['64', '65', '66']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'last'}; {'id': '65', 'type': 'string', 'children': [], 'value': "'<string>'"}; {'id': '66', 'type': 'keyword_argument', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '68', 'type': 'string', 'children': [], 'value': "'eval'"}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'namespace'}
|
Exec a code block & return evaluation of the last line
|
def generate_words(numberofwords, wordlist, secure=None):
if not secure:
chooser = random.choice
else:
chooser = random.SystemRandom().choice
return [chooser(wordlist) for _ in range(numberofwords)]
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'generate_words'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'numberofwords'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'wordlist'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'secure'}; {'id': '8', 'type': 'None', 'children': []}; {'id': '9', 'type': 'block', 'children': ['10', '32']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '13', '20']}; {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'secure'}; {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'chooser'}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'choice'}; {'id': '20', 'type': 'else_clause', 'children': ['21']}; {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'chooser'}; {'id': '25', 'type': 'attribute', 'children': ['26', '31']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'SystemRandom'}; {'id': '30', 'type': 'argument_list', 'children': []}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'choice'}; {'id': '32', 'type': 'return_statement', 'children': ['33']}; {'id': '33', 'type': 'list_comprehension', 'children': ['34', '38']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'chooser'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'wordlist'}; {'id': '38', 'type': 'for_in_clause', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'numberofwords'}
|
Generate a list of random words from wordlist.
|
def standardize(score):
score = asarray_ndim(score, 1)
return (score - np.nanmean(score)) / np.nanstd(score)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'standardize'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'score'}; {'id': '5', 'type': 'block', 'children': ['6', '14']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'score'}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'asarray_ndim'}; {'id': '11', 'type': 'argument_list', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'score'}; {'id': '13', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '14', 'type': 'return_statement', 'children': ['15']}; {'id': '15', 'type': 'binary_operator', 'children': ['16', '25'], 'value': '/'}; {'id': '16', 'type': '()', 'children': ['17']}; {'id': '17', 'type': 'binary_operator', 'children': ['18', '19'], 'value': '-'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'score'}; {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'nanmean'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'score'}; {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'nanstd'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'score'}
|
Centre and scale to unit variance.
|
def addUnderlineAnnot(self, rect):
CheckParent(self)
val = _fitz.Page_addUnderlineAnnot(self, rect)
if not val: return
val.thisown = True
val.parent = weakref.proxy(self)
self._annot_refs[id(val)] = val
return val
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'addUnderlineAnnot'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'rect'}; {'id': '6', 'type': 'block', 'children': ['7', '12', '22', '27', '33', '44', '55']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'CheckParent'}; {'id': '10', 'type': 'argument_list', 'children': ['11']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': '_fitz'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'Page_addUnderlineAnnot'}; {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'rect'}; {'id': '22', 'type': 'if_statement', 'children': ['23', '25']}; {'id': '23', 'type': 'not_operator', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'return_statement', 'children': []}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '32']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'thisown'}; {'id': '32', 'type': 'True', 'children': []}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '38']}; {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '38', 'type': 'call', 'children': ['39', '42']}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'weakref'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'proxy'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}; {'id': '45', 'type': 'assignment', 'children': ['46', '54']}; {'id': '46', 'type': 'subscript', 'children': ['47', '50']}; {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': '_annot_refs'}; {'id': '50', 'type': 'call', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '55', 'type': 'return_statement', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'val'}
|
Underline content in a rectangle or quadrilateral.
|
def _import_module(module_path, classnames):
try:
imported_module = __import__(module_path, fromlist=classnames)
return imported_module
except ImportError:
__, __, exc_traceback = sys.exc_info()
frames = traceback.extract_tb(exc_traceback)
if len(frames) > 1:
raise
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_import_module'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'module_path'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'classnames'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'try_statement', 'children': ['8', '21']}; {'id': '8', 'type': 'block', 'children': ['9', '19']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'imported_module'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': '__import__'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'module_path'}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'fromlist'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'classnames'}; {'id': '19', 'type': 'return_statement', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'imported_module'}; {'id': '21', 'type': 'except_clause', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'ImportError'}; {'id': '23', 'type': 'block', 'children': ['24', '35', '44']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}; {'id': '25', 'type': 'assignment', 'children': ['26', '30']}; {'id': '26', 'type': 'pattern_list', 'children': ['27', '28', '29']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': '__'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '__'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'exc_traceback'}; {'id': '30', 'type': 'call', 'children': ['31', '34']}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'exc_info'}; {'id': '34', 'type': 'argument_list', 'children': []}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'frames'}; {'id': '38', 'type': 'call', 'children': ['39', '42']}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'traceback'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'extract_tb'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'exc_traceback'}; {'id': '44', 'type': 'if_statement', 'children': ['45', '51']}; {'id': '45', 'type': 'comparison_operator', 'children': ['46', '50'], 'value': '>'}; {'id': '46', 'type': 'call', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'frames'}; {'id': '50', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'raise_statement', 'children': []}
|
Tries to import the given Python module path.
|
def use_isolated_book_view(self):
self._book_view = ISOLATED
for session in self._get_provider_sessions():
try:
session.use_isolated_book_view()
except AttributeError:
pass
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'use_isolated_book_view'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '12']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': '_book_view'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'ISOLATED'}; {'id': '12', 'type': 'for_statement', 'children': ['13', '14', '19']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'session'}; {'id': '14', 'type': 'call', 'children': ['15', '18']}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': '_get_provider_sessions'}; {'id': '18', 'type': 'argument_list', 'children': []}; {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'try_statement', 'children': ['21', '28']}; {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'session'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'use_isolated_book_view'}; {'id': '27', 'type': 'argument_list', 'children': []}; {'id': '28', 'type': 'except_clause', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'AttributeError'}; {'id': '30', 'type': 'block', 'children': ['31']}; {'id': '31', 'type': 'pass_statement', 'children': []}
|
Pass through to provider CommentLookupSession.use_isolated_book_view
|
def _pre_delete_hook(cls, key):
if cls.searching_enabled:
doc_id = cls.search_get_document_id(key)
index = cls.search_get_index()
index.delete(doc_id)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_pre_delete_hook'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'if_statement', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'searching_enabled'}; {'id': '11', 'type': 'block', 'children': ['12', '21', '29']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'doc_id'}; {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'search_get_document_id'}; {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'search_get_index'}; {'id': '28', 'type': 'argument_list', 'children': []}; {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '34']}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'delete'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'doc_id'}
|
Removes instance from index.
|
def disassociate_public_ip(self, public_ip_id):
floating_ip = self.client.floating_ips.get(public_ip_id)
floating_ip = floating_ip.to_dict()
instance_id = floating_ip.get('instance_id')
address = floating_ip.get('ip')
self.client.servers.remove_floating_ip(instance_id, address)
return True
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'disassociate_public_ip'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'public_ip_id'}; {'id': '6', 'type': 'block', 'children': ['7', '20', '28', '37', '46', '58']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'floating_ip'}; {'id': '10', 'type': 'call', 'children': ['11', '18']}; {'id': '11', 'type': 'attribute', 'children': ['12', '17']}; {'id': '12', 'type': 'attribute', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'floating_ips'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'public_ip_id'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'floating_ip'}; {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'floating_ip'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'to_dict'}; {'id': '27', 'type': 'argument_list', 'children': []}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}; {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'instance_id'}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'floating_ip'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'string', 'children': [], 'value': "'instance_id'"}; {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'address'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'floating_ip'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}; {'id': '45', 'type': 'string', 'children': [], 'value': "'ip'"}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}; {'id': '47', 'type': 'call', 'children': ['48', '55']}; {'id': '48', 'type': 'attribute', 'children': ['49', '54']}; {'id': '49', 'type': 'attribute', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'servers'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'remove_floating_ip'}; {'id': '55', 'type': 'argument_list', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'instance_id'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'address'}; {'id': '58', 'type': 'return_statement', 'children': ['59']}; {'id': '59', 'type': 'True', 'children': []}
|
Disassociate a external IP
|
def save(self, *args, **kwargs):
valid = map(str, settings.RATINGS_RANGE)
if str(self.value) not in valid:
raise ValueError("Invalid rating. %s is not in %s" % (self.value,
", ".join(valid)))
super(Rating, self).save(*args, **kwargs)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'list_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '9', 'type': 'block', 'children': ['10', '20', '46']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'valid'}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'settings'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'RATINGS_RANGE'}; {'id': '20', 'type': 'if_statement', 'children': ['21', '29']}; {'id': '21', 'type': 'comparison_operator', 'children': ['22', '28'], 'value': 'not in'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'valid'}; {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'raise_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '36'], 'value': '%'}; {'id': '35', 'type': 'string', 'children': [], 'value': '"Invalid rating. %s is not in %s"'}; {'id': '36', 'type': 'tuple', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'string', 'children': [], 'value': '", "'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'valid'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}; {'id': '47', 'type': 'call', 'children': ['48', '55']}; {'id': '48', 'type': 'attribute', 'children': ['49', '54']}; {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'super'}; {'id': '51', 'type': 'argument_list', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'Rating'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'save'}; {'id': '55', 'type': 'argument_list', 'children': ['56', '58']}; {'id': '56', 'type': 'list_splat', 'children': ['57']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '58', 'type': 'dictionary_splat', 'children': ['59']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'kwargs'}
|
Validate that the rating falls between the min and max values.
|
def _config(self):
config = 0
if self.mode == MODE_NORMAL:
config += (self._t_standby << 5)
if self._iir_filter:
config += (self._iir_filter << 2)
return config
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_config'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '10', '26', '40']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '9', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '10', 'type': 'if_statement', 'children': ['11', '16']}; {'id': '11', 'type': 'comparison_operator', 'children': ['12', '15'], 'value': '=='}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'MODE_NORMAL'}; {'id': '16', 'type': 'block', 'children': ['17']}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'augmented_assignment', 'children': ['19', '20'], 'value': '+='}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '20', 'type': '()', 'children': ['21']}; {'id': '21', 'type': 'binary_operator', 'children': ['22', '25'], 'value': '<<'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_t_standby'}; {'id': '25', 'type': 'integer', 'children': [], 'value': '5'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': '_iir_filter'}; {'id': '30', 'type': 'block', 'children': ['31']}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'augmented_assignment', 'children': ['33', '34'], 'value': '+='}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '34', 'type': '()', 'children': ['35']}; {'id': '35', 'type': 'binary_operator', 'children': ['36', '39'], 'value': '<<'}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': '_iir_filter'}; {'id': '39', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '40', 'type': 'return_statement', 'children': ['41']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'config'}
|
Value to be written to the device's config register
|
def delete_issue_link_type(self, issue_link_type_id):
url = 'rest/api/2/issueLinkType/{issueLinkTypeId}'.format(issueLinkTypeId=issue_link_type_id)
return self.delete(url)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'delete_issue_link_type'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'issue_link_type_id'}; {'id': '6', 'type': 'block', 'children': ['7', '18']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'string', 'children': [], 'value': "'rest/api/2/issueLinkType/{issueLinkTypeId}'"}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}; {'id': '15', 'type': 'keyword_argument', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'issueLinkTypeId'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'issue_link_type_id'}; {'id': '18', 'type': 'return_statement', 'children': ['19']}; {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'delete'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'url'}
|
Delete the specified issue link type.
|
def check_file(self):
try:
image_type = ".{0}".format(self.image.split(".")[1])
if image_type not in self.file_format:
print("Format: '{0}' not recognized. Use one of "
"them:\n{1}".format(self.image.split(".")[1],
", ".join(self.file_format)))
raise SystemExit()
except IndexError:
print("slpkg: Error: Image file suffix missing")
raise SystemExit()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_file'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'try_statement', 'children': ['7', '66']}; {'id': '7', 'type': 'block', 'children': ['8', '26']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'image_type'}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'string', 'children': [], 'value': '".{0}"'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'subscript', 'children': ['17', '25']}; {'id': '17', 'type': 'call', 'children': ['18', '23']}; {'id': '18', 'type': 'attribute', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'image'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'string', 'children': [], 'value': '"."'}; {'id': '25', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '32']}; {'id': '27', 'type': 'comparison_operator', 'children': ['28', '29'], 'value': 'not in'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'image_type'}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'file_format'}; {'id': '32', 'type': 'block', 'children': ['33', '62']}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'call', 'children': ['38', '43']}; {'id': '38', 'type': 'attribute', 'children': ['39', '42']}; {'id': '39', 'type': 'concatenated_string', 'children': ['40', '41']}; {'id': '40', 'type': 'string', 'children': [], 'value': '"Format: \'{0}\' not recognized. Use one of "'}; {'id': '41', 'type': 'string', 'children': [], 'value': '"them:\\n{1}"'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '43', 'type': 'argument_list', 'children': ['44', '54']}; {'id': '44', 'type': 'subscript', 'children': ['45', '53']}; {'id': '45', 'type': 'call', 'children': ['46', '51']}; {'id': '46', 'type': 'attribute', 'children': ['47', '50']}; {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'image'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'string', 'children': [], 'value': '"."'}; {'id': '53', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}; {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'string', 'children': [], 'value': '", "'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'file_format'}; {'id': '62', 'type': 'raise_statement', 'children': ['63']}; {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'SystemExit'}; {'id': '65', 'type': 'argument_list', 'children': []}; {'id': '66', 'type': 'except_clause', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'IndexError'}; {'id': '68', 'type': 'block', 'children': ['69', '74']}; {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '72']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}; {'id': '73', 'type': 'string', 'children': [], 'value': '"slpkg: Error: Image file suffix missing"'}; {'id': '74', 'type': 'raise_statement', 'children': ['75']}; {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'SystemExit'}; {'id': '77', 'type': 'argument_list', 'children': []}
|
Check for file format and type
|
def loadFile(self, fileName):
self.file = QtCore.QFile(fileName)
if self.file.exists():
self.qteText.append(open(fileName).read())
else:
msg = "File <b>{}</b> does not exist".format(self.qteAppletID())
self.qteLogger.info(msg)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'loadFile'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'fileName'}; {'id': '6', 'type': 'block', 'children': ['7', '18']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'QtCore'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'QFile'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'fileName'}; {'id': '18', 'type': 'if_statement', 'children': ['19', '26', '43']}; {'id': '19', 'type': 'call', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '25', 'type': 'argument_list', 'children': []}; {'id': '26', 'type': 'block', 'children': ['27']}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '34']}; {'id': '29', 'type': 'attribute', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'qteText'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}; {'id': '35', 'type': 'call', 'children': ['36', '42']}; {'id': '36', 'type': 'attribute', 'children': ['37', '41']}; {'id': '37', 'type': 'call', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'fileName'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '42', 'type': 'argument_list', 'children': []}; {'id': '43', 'type': 'else_clause', 'children': ['44']}; {'id': '44', 'type': 'block', 'children': ['45', '58']}; {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '48', 'type': 'call', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'string', 'children': [], 'value': '"File <b>{}</b> does not exist"'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}; {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'qteAppletID'}; {'id': '57', 'type': 'argument_list', 'children': []}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}; {'id': '59', 'type': 'call', 'children': ['60', '65']}; {'id': '60', 'type': 'attribute', 'children': ['61', '64']}; {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'qteLogger'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'msg'}
|
Display the file associated with the appletID.
|
def relative_path(self, absolute_path, output_filename):
absolute_path = posixpath.join(settings.PIPELINE_ROOT, absolute_path)
output_path = posixpath.join(settings.PIPELINE_ROOT, posixpath.dirname(output_filename))
return relpath(absolute_path, output_path)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'relative_path'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'absolute_path'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'output_filename'}; {'id': '7', 'type': 'block', 'children': ['8', '20', '37']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'absolute_path'}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'posixpath'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'settings'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'PIPELINE_ROOT'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'absolute_path'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'output_path'}; {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'posixpath'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '27', 'type': 'argument_list', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'settings'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'PIPELINE_ROOT'}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'posixpath'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'dirname'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'output_filename'}; {'id': '37', 'type': 'return_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'relpath'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'absolute_path'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'output_path'}
|
Rewrite paths relative to the output stylesheet path
|
def extract_bits(self, val):
thisval = self.high >> 4
thisval = thisval ^ val
self.high = (self.high << 4) | (self.low >> 4)
self.high = self.high & constants.BYTEMASK
self.low = self.low << 4
self.low = self.low & constants.BYTEMASK
self.high = self.high ^ self.LookupHigh[thisval]
self.high = self.high & constants.BYTEMASK
self.low = self.low ^ self.LookupLow[thisval]
self.low = self.low & constants.BYTEMASK
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'extract_bits'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '6', 'type': 'block', 'children': ['7', '15', '21', '39', '51', '61', '73', '87', '99', '113']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'thisval'}; {'id': '10', 'type': 'binary_operator', 'children': ['11', '14'], 'value': '>>'}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '14', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'thisval'}; {'id': '18', 'type': 'binary_operator', 'children': ['19', '20'], 'value': '^'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'thisval'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '26']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '26', 'type': 'binary_operator', 'children': ['27', '33'], 'value': '|'}; {'id': '27', 'type': '()', 'children': ['28']}; {'id': '28', 'type': 'binary_operator', 'children': ['29', '32'], 'value': '<<'}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '33', 'type': '()', 'children': ['34']}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '38'], 'value': '>>'}; {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '44']}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '44', 'type': 'binary_operator', 'children': ['45', '48'], 'value': '&'}; {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'constants'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'BYTEMASK'}; {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '56']}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '56', 'type': 'binary_operator', 'children': ['57', '60'], 'value': '<<'}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '60', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '66']}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '66', 'type': 'binary_operator', 'children': ['67', '70'], 'value': '&'}; {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'constants'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'BYTEMASK'}; {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '78']}; {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '78', 'type': 'binary_operator', 'children': ['79', '82'], 'value': '^'}; {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '82', 'type': 'subscript', 'children': ['83', '86']}; {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'LookupHigh'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'thisval'}; {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '92']}; {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '92', 'type': 'binary_operator', 'children': ['93', '96'], 'value': '&'}; {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'high'}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'constants'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'BYTEMASK'}; {'id': '99', 'type': 'expression_statement', 'children': ['100']}; {'id': '100', 'type': 'assignment', 'children': ['101', '104']}; {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '104', 'type': 'binary_operator', 'children': ['105', '108'], 'value': '^'}; {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '107', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '108', 'type': 'subscript', 'children': ['109', '112']}; {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'LookupLow'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'thisval'}; {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '118']}; {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '118', 'type': 'binary_operator', 'children': ['119', '122'], 'value': '&'}; {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'constants'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'BYTEMASK'}
|
Extras the 4 bits, XORS the message data, and does table lookups.
|
def interface(iface):
iface_info, error = _get_iface_info(iface)
if error is False:
return iface_info.get(iface, {}).get('inet', '')
else:
return error
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'interface'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'iface'}; {'id': '5', 'type': 'block', 'children': ['6', '15']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'pattern_list', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'iface_info'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': '_get_iface_info'}; {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'iface'}; {'id': '15', 'type': 'if_statement', 'children': ['16', '19', '34']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'is'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '18', 'type': 'False', 'children': []}; {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'return_statement', 'children': ['21']}; {'id': '21', 'type': 'call', 'children': ['22', '31']}; {'id': '22', 'type': 'attribute', 'children': ['23', '30']}; {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'iface_info'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '27', 'type': 'argument_list', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'iface'}; {'id': '29', 'type': 'dictionary', 'children': []}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '31', 'type': 'argument_list', 'children': ['32', '33']}; {'id': '32', 'type': 'string', 'children': [], 'value': "'inet'"}; {'id': '33', 'type': 'string', 'children': [], 'value': "''"}; {'id': '34', 'type': 'else_clause', 'children': ['35']}; {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'return_statement', 'children': ['37']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'error'}
|
Return the details of `iface` or an error if it does not exist
|
def enable_reporting(self):
self.reporting = True
msg = bytearray([REPORT_DIGITAL + self.port_number, 1])
self.board.sp.write(msg)
for pin in self.pins:
if pin.mode == INPUT:
pin.reporting = True
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'enable_reporting'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '12', '25', '36']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'reporting'}; {'id': '11', 'type': 'True', 'children': []}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'bytearray'}; {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'list', 'children': ['19', '24'], 'value': '[REPORT_DIGITAL + self.port_number, 1]'}; {'id': '19', 'type': 'binary_operator', 'children': ['20', '21'], 'value': '+'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'REPORT_DIGITAL'}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'port_number'}; {'id': '24', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '34']}; {'id': '27', 'type': 'attribute', 'children': ['28', '33']}; {'id': '28', 'type': 'attribute', 'children': ['29', '32']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'board'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'sp'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '36', 'type': 'for_statement', 'children': ['37', '38', '41']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'pin'}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'pins'}; {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'if_statement', 'children': ['43', '48']}; {'id': '43', 'type': 'comparison_operator', 'children': ['44', '47'], 'value': '=='}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'pin'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'INPUT'}; {'id': '48', 'type': 'block', 'children': ['49']}; {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '54']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'pin'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'reporting'}; {'id': '54', 'type': 'True', 'children': []}
|
Enable reporting of values for the whole port.
|
def htmlCreateMemoryParserCtxt(buffer, size):
ret = libxml2mod.htmlCreateMemoryParserCtxt(buffer, size)
if ret is None:raise parserError('htmlCreateMemoryParserCtxt() failed')
return parserCtxt(_obj=ret)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'htmlCreateMemoryParserCtxt'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'buffer'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '6', 'type': 'block', 'children': ['7', '17', '27']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'libxml2mod'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'htmlCreateMemoryParserCtxt'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'buffer'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '17', 'type': 'if_statement', 'children': ['18', '21']}; {'id': '18', 'type': 'comparison_operator', 'children': ['19', '20'], 'value': 'is'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '20', 'type': 'None', 'children': []}; {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'raise_statement', 'children': ['23']}; {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'parserError'}; {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'string', 'children': [], 'value': "'htmlCreateMemoryParserCtxt() failed'"}; {'id': '27', 'type': 'return_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'parserCtxt'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}; {'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': '_obj'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'ret'}
|
Create a parser context for an HTML in-memory document.
|
def pid(self):
try:
os.remove(self.pidfile)
except IOError:
if not os.path.isfile(self.pidfile):
return None
LOG.exception("Failed to clear pidfile {0}).".format(self.pidfile))
sys.exit(exit.PIDFILE_INACCESSIBLE)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'pid'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'try_statement', 'children': ['7', '17']}; {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'remove'}; {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'pidfile'}; {'id': '17', 'type': 'except_clause', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'IOError'}; {'id': '19', 'type': 'block', 'children': ['20', '35', '49']}; {'id': '20', 'type': 'if_statement', 'children': ['21', '32']}; {'id': '21', 'type': 'not_operator', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '28']}; {'id': '23', 'type': 'attribute', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'isfile'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'pidfile'}; {'id': '32', 'type': 'block', 'children': ['33']}; {'id': '33', 'type': 'return_statement', 'children': ['34']}; {'id': '34', 'type': 'None', 'children': []}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'LOG'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'exception'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}; {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}; {'id': '43', 'type': 'string', 'children': [], 'value': '"Failed to clear pidfile {0})."'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'pidfile'}; {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '54']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}; {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'PIDFILE_INACCESSIBLE'}
|
Stop managing the current pid.
|
def add_metadata_to_archive(self, metadata, meta_path):
archive_path = self.get_full_archive_path(meta_path.lstrip('/'))
write_data_to_file(metadata, archive_path)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_metadata_to_archive'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'meta_path'}; {'id': '7', 'type': 'block', 'children': ['8', '22']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'archive_path'}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'get_full_archive_path'}; {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'meta_path'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'lstrip'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}; {'id': '21', 'type': 'string', 'children': [], 'value': "'/'"}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'write_data_to_file'}; {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'archive_path'}
|
Add metadata to archive
|
def render_secretfile(opt):
LOG.debug("Using Secretfile %s", opt.secretfile)
secretfile_path = abspath(opt.secretfile)
obj = load_vars(opt)
return render(secretfile_path, obj)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'render_secretfile'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'opt'}; {'id': '5', 'type': 'block', 'children': ['6', '16', '25', '32']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'LOG'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '11', 'type': 'argument_list', 'children': ['12', '13']}; {'id': '12', 'type': 'string', 'children': [], 'value': '"Using Secretfile %s"'}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'opt'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'secretfile'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'secretfile_path'}; {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'abspath'}; {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'opt'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'secretfile'}; {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '28', 'type': 'call', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'load_vars'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'opt'}; {'id': '32', 'type': 'return_statement', 'children': ['33']}; {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'render'}; {'id': '35', 'type': 'argument_list', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'secretfile_path'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'obj'}
|
Renders and returns the Secretfile construct
|
def delete_edge_by_nodes(self, node_a, node_b):
node = self.get_node(node_a)
edge_ids = []
for e_id in node['edges']:
edge = self.get_edge(e_id)
if edge['vertices'][1] == node_b:
edge_ids.append(e_id)
for e in edge_ids:
self.delete_edge_by_id(e)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'delete_edge_by_nodes'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'node_a'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'node_b'}; {'id': '7', 'type': 'block', 'children': ['8', '17', '21', '52']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'get_node'}; {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'node_a'}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'edge_ids'}; {'id': '20', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '21', 'type': 'for_statement', 'children': ['22', '23', '26']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'e_id'}; {'id': '23', 'type': 'subscript', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '25', 'type': 'string', 'children': [], 'value': "'edges'"}; {'id': '26', 'type': 'block', 'children': ['27', '36']}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'edge'}; {'id': '30', 'type': 'call', 'children': ['31', '34']}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'get_edge'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'e_id'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '44']}; {'id': '37', 'type': 'comparison_operator', 'children': ['38', '43'], 'value': '=='}; {'id': '38', 'type': 'subscript', 'children': ['39', '42']}; {'id': '39', 'type': 'subscript', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'edge'}; {'id': '41', 'type': 'string', 'children': [], 'value': "'vertices'"}; {'id': '42', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'node_b'}; {'id': '44', 'type': 'block', 'children': ['45']}; {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}; {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'edge_ids'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'e_id'}; {'id': '52', 'type': 'for_statement', 'children': ['53', '54', '55']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'edge_ids'}; {'id': '55', 'type': 'block', 'children': ['56']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}; {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'delete_edge_by_id'}; {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'e'}
|
Removes all the edges from node_a to node_b from the graph.
|
def publish(self, topic, payload, qos=0, retain=False):
return self._client.publish(topic, payload, qos, retain)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'publish'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'topic'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'payload'}; {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'qos'}; {'id': '9', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'retain'}; {'id': '12', 'type': 'False', 'children': []}; {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'return_statement', 'children': ['15']}; {'id': '15', 'type': 'call', 'children': ['16', '21']}; {'id': '16', 'type': 'attribute', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': '_client'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'publish'}; {'id': '21', 'type': 'argument_list', 'children': ['22', '23', '24', '25']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'topic'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'payload'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'qos'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'retain'}
|
Publishes an MQTT message
|
def clean(self):
super().clean()
if self.poster is None and self.anonymous_key is None:
raise ValidationError(
_('A user id or an anonymous key must be associated with a post.'),
)
if self.poster and self.anonymous_key:
raise ValidationError(
_('A user id or an anonymous key must be associated with a post, but not both.'),
)
if self.anonymous_key and not self.username:
raise ValidationError(_('A username must be specified if the poster is anonymous'))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'clean'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '14', '35', '52']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '13']}; {'id': '8', 'type': 'attribute', 'children': ['9', '12']}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'super'}; {'id': '11', 'type': 'argument_list', 'children': []}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'clean'}; {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'if_statement', 'children': ['15', '26']}; {'id': '15', 'type': 'boolean_operator', 'children': ['16', '21'], 'value': 'and'}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '20'], 'value': 'is'}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'poster'}; {'id': '20', 'type': 'None', 'children': []}; {'id': '21', 'type': 'comparison_operator', 'children': ['22', '25'], 'value': 'is'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'anonymous_key'}; {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'block', 'children': ['27']}; {'id': '27', 'type': 'raise_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ValidationError'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'string', 'children': [], 'value': "'A user id or an anonymous key must be associated with a post.'"}; {'id': '35', 'type': 'if_statement', 'children': ['36', '43']}; {'id': '36', 'type': 'boolean_operator', 'children': ['37', '40'], 'value': 'and'}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'poster'}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'anonymous_key'}; {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'raise_statement', 'children': ['45']}; {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'ValidationError'}; {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}; {'id': '51', 'type': 'string', 'children': [], 'value': "'A user id or an anonymous key must be associated with a post, but not both.'"}; {'id': '52', 'type': 'if_statement', 'children': ['53', '61']}; {'id': '53', 'type': 'boolean_operator', 'children': ['54', '57'], 'value': 'and'}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'anonymous_key'}; {'id': '57', 'type': 'not_operator', 'children': ['58']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '61', 'type': 'block', 'children': ['62']}; {'id': '62', 'type': 'raise_statement', 'children': ['63']}; {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'ValidationError'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}; {'id': '69', 'type': 'string', 'children': [], 'value': "'A username must be specified if the poster is anonymous'"}
|
Validates the post instance.
|
def from_dict(raw_data):
url = None
width = None
height = None
try:
url = raw_data['url']
width = raw_data['width']
height = raw_data['height']
except KeyError:
raise ValueError('Unexpected image json structure')
except TypeError:
pass
return Image(url, width, height)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'from_dict'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'raw_data'}; {'id': '5', 'type': 'block', 'children': ['6', '10', '14', '18', '50']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'width'}; {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'height'}; {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'try_statement', 'children': ['19', '38', '46']}; {'id': '19', 'type': 'block', 'children': ['20', '26', '32']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '23', 'type': 'subscript', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'raw_data'}; {'id': '25', 'type': 'string', 'children': [], 'value': "'url'"}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'width'}; {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'raw_data'}; {'id': '31', 'type': 'string', 'children': [], 'value': "'width'"}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}; {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'height'}; {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'raw_data'}; {'id': '37', 'type': 'string', 'children': [], 'value': "'height'"}; {'id': '38', 'type': 'except_clause', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'KeyError'}; {'id': '40', 'type': 'block', 'children': ['41']}; {'id': '41', 'type': 'raise_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}; {'id': '45', 'type': 'string', 'children': [], 'value': "'Unexpected image json structure'"}; {'id': '46', 'type': 'except_clause', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '48', 'type': 'block', 'children': ['49']}; {'id': '49', 'type': 'pass_statement', 'children': []}; {'id': '50', 'type': 'return_statement', 'children': ['51']}; {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'Image'}; {'id': '53', 'type': 'argument_list', 'children': ['54', '55', '56']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'width'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'height'}
|
Create Image from raw dictionary data.
|
def find_info(name=None):
if not name:
return list(servers.keys())
name = name.lower()
if name in servers:
info = servers[name]
else:
raise CityNotFound("Could not find the specified city: %s" % name)
return info
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'find_info'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '6', 'type': 'None', 'children': []}; {'id': '7', 'type': 'block', 'children': ['8', '21', '29', '49']}; {'id': '8', 'type': 'if_statement', 'children': ['9', '11']}; {'id': '9', 'type': 'not_operator', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'servers'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '20', 'type': 'argument_list', 'children': []}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '28', 'type': 'argument_list', 'children': []}; {'id': '29', 'type': 'if_statement', 'children': ['30', '33', '40']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': 'in'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'servers'}; {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}; {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '37', 'type': 'subscript', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'servers'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '40', 'type': 'else_clause', 'children': ['41']}; {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'raise_statement', 'children': ['43']}; {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'CityNotFound'}; {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'binary_operator', 'children': ['47', '48'], 'value': '%'}; {'id': '47', 'type': 'string', 'children': [], 'value': '"Could not find the specified city: %s"'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '49', 'type': 'return_statement', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'info'}
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Find the needed city server information.
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