code
stringlengths 51
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def _bits_to_geohash(value):
ret = []
for i in (value[i:i+5] for i in xrange(0, len(value), 5)):
total = sum([(bit*2**count) for count,bit in enumerate(i[::-1])])
ret.append(BASE32MAPR[total])
return "".join(ret)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_bits_to_geohash'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '5', 'type': 'block', 'children': ['6', '10', '69']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'for_statement', 'children': ['11', '12', '32']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '12', 'type': 'generator_expression', 'children': ['13', '21']}; {'id': '13', 'type': 'subscript', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '15', 'type': 'slice', 'children': ['16', '17', '18']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '17', 'type': 'colon', 'children': []}; {'id': '18', 'type': 'binary_operator', 'children': ['19', '20'], 'value': '+'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '20', 'type': 'integer', 'children': [], 'value': '5'}; {'id': '21', 'type': 'for_in_clause', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'xrange'}; {'id': '25', 'type': 'argument_list', 'children': ['26', '27', '31']}; {'id': '26', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '31', 'type': 'integer', 'children': [], 'value': '5'}; {'id': '32', 'type': 'block', 'children': ['33', '60']}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'total'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}; {'id': '39', 'type': 'list_comprehension', 'children': ['40', '46']}; {'id': '40', 'type': '()', 'children': ['41']}; {'id': '41', 'type': 'binary_operator', 'children': ['42', '43'], 'value': '*'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'bit'}; {'id': '43', 'type': 'binary_operator', 'children': ['44', '45'], 'value': '**'}; {'id': '44', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '46', 'type': 'for_in_clause', 'children': ['47', '50']}; {'id': '47', 'type': 'pattern_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'bit'}; {'id': '50', 'type': 'call', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}; {'id': '53', 'type': 'subscript', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '55', 'type': 'slice', 'children': ['56', '57', '58']}; {'id': '56', 'type': 'colon', 'children': []}; {'id': '57', 'type': 'colon', 'children': []}; {'id': '58', 'type': 'unary_operator', 'children': ['59'], 'value': '-'}; {'id': '59', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}; {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'BASE32MAPR'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'total'}; {'id': '69', 'type': 'return_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}; {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'string', 'children': [], 'value': '""'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'ret'}
|
Convert a list of GeoHash bits to a GeoHash.
|
def encrypt(source, dest, keys):
cmd = flatten([gnupg_bin(), "--armor", "--output", dest, gnupg_verbose(),
gnupg_home(), recipients_args(keys),
"--encrypt", source])
stderr_output(cmd)
return True
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'encrypt'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'dest'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '7', 'type': 'block', 'children': ['8', '33', '38']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'flatten'}; {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'list', 'children': ['15', '18', '19', '20', '21', '24', '27', '31', '32'], 'value': '[gnupg_bin(), "--armor", "--output", dest, gnupg_verbose(),\n gnupg_home(), recipients_args(keys),\n "--encrypt", source]'}; {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'gnupg_bin'}; {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'string', 'children': [], 'value': '"--armor"'}; {'id': '19', 'type': 'string', 'children': [], 'value': '"--output"'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'dest'}; {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'gnupg_verbose'}; {'id': '23', 'type': 'argument_list', 'children': []}; {'id': '24', 'type': 'call', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'gnupg_home'}; {'id': '26', 'type': 'argument_list', 'children': []}; {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'recipients_args'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '31', 'type': 'string', 'children': [], 'value': '"--encrypt"'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'stderr_output'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '38', 'type': 'return_statement', 'children': ['39']}; {'id': '39', 'type': 'True', 'children': []}
|
Encrypts a file using the given keys
|
def generate(self, api):
for namespace in api.namespaces.values():
with self.output_to_relative_path('%s.stone' % namespace.name):
self.emit('namespace %s' % namespace.name)
for data_type in namespace.linearize_data_types():
self.generate_data_type(data_type)
for route in namespace.routes:
self.generate_route(route)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'generate'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'api'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'for_statement', 'children': ['8', '9', '16']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '9', 'type': 'call', 'children': ['10', '15']}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'api'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'namespaces'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '15', 'type': 'argument_list', 'children': []}; {'id': '16', 'type': 'block', 'children': ['17']}; {'id': '17', 'type': 'with_statement', 'children': ['18', '30']}; {'id': '18', 'type': 'with_clause', 'children': ['19']}; {'id': '19', 'type': 'with_item', 'children': ['20']}; {'id': '20', 'type': 'call', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'output_to_relative_path'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'binary_operator', 'children': ['26', '27'], 'value': '%'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'%s.stone'"}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '30', 'type': 'block', 'children': ['31', '42', '57']}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'emit'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'binary_operator', 'children': ['38', '39'], 'value': '%'}; {'id': '38', 'type': 'string', 'children': [], 'value': "'namespace %s'"}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '42', 'type': 'for_statement', 'children': ['43', '44', '49']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'data_type'}; {'id': '44', 'type': 'call', 'children': ['45', '48']}; {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'linearize_data_types'}; {'id': '48', 'type': 'argument_list', 'children': []}; {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}; {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'generate_data_type'}; {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'data_type'}; {'id': '57', 'type': 'for_statement', 'children': ['58', '59', '62']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'route'}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'routes'}; {'id': '62', 'type': 'block', 'children': ['63']}; {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'call', 'children': ['65', '68']}; {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'generate_route'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'route'}
|
Main code generator entry point.
|
def format(self):
self.max_lengths = []
for row in self.rows:
if len(self.max_lengths) < len(row):
self.max_lengths += [0] * (len(row) - len(self.max_lengths))
for idx, val in enumerate(row):
len_cell = len(str(val)) if val else 0
if self.max_lengths[idx] < len_cell:
self.max_lengths[idx] = len_cell
return self.max_lengths
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'format'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '12', '90']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'max_lengths'}; {'id': '11', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '12', 'type': 'for_statement', 'children': ['13', '14', '17']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'rows'}; {'id': '17', 'type': 'block', 'children': ['18', '51']}; {'id': '18', 'type': 'if_statement', 'children': ['19', '30']}; {'id': '19', 'type': 'comparison_operator', 'children': ['20', '26'], 'value': '<'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'max_lengths'}; {'id': '26', 'type': 'call', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '30', 'type': 'block', 'children': ['31']}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'augmented_assignment', 'children': ['33', '36'], 'value': '+='}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'max_lengths'}; {'id': '36', 'type': 'binary_operator', 'children': ['37', '39'], 'value': '*'}; {'id': '37', 'type': 'list', 'children': ['38'], 'value': '[0]'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '39', 'type': '()', 'children': ['40']}; {'id': '40', 'type': 'binary_operator', 'children': ['41', '45'], 'value': '-'}; {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'max_lengths'}; {'id': '51', 'type': 'for_statement', 'children': ['52', '55', '59']}; {'id': '52', 'type': 'pattern_list', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '59', 'type': 'block', 'children': ['60', '73']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}; {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'len_cell'}; {'id': '63', 'type': 'conditional_expression', 'children': ['64', '71', '72'], 'value': 'if'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}; {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '72', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '73', 'type': 'if_statement', 'children': ['74', '81']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '80'], 'value': '<'}; {'id': '75', 'type': 'subscript', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'max_lengths'}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'len_cell'}; {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}; {'id': '83', 'type': 'assignment', 'children': ['84', '89']}; {'id': '84', 'type': 'subscript', 'children': ['85', '88']}; {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'max_lengths'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'len_cell'}; {'id': '90', 'type': 'return_statement', 'children': ['91']}; {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'max_lengths'}
|
Format table to print out
|
def build_block(self):
header_bytes = self.block_header.SerializeToString()
block = Block(header=header_bytes,
header_signature=self._header_signature)
block.batches.extend(self.batches)
return block
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'build_block'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '16', '30', '41']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'header_bytes'}; {'id': '9', 'type': 'call', 'children': ['10', '15']}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'block_header'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'SerializeToString'}; {'id': '15', 'type': 'argument_list', 'children': []}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'block'}; {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'Block'}; {'id': '21', 'type': 'argument_list', 'children': ['22', '25']}; {'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'header_bytes'}; {'id': '25', 'type': 'keyword_argument', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'header_signature'}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': '_header_signature'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'block'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'batches'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'extend'}; {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'batches'}; {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'block'}
|
Assembles the candidate block into it's finalized form for broadcast.
|
def download(args):
accessions, infoFTP = set(args['g']), args['i']
search, exclude = args['s'], args['e']
FTPs = getFTPs(accessions, infoFTP, search, exclude, threads = args['t'],
convert = args['convert'])
if args['test'] is True:
for genome in FTPs:
print('found:', ';'.join(genome[-1]), genome[0])
return FTPs
pool = Pool(args['t'])
pool = pool.imap_unordered(wgetGenome, FTPs)
files = []
for f in tqdm(pool, total = len(accessions)):
files.append(f)
return files
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'download'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '5', 'type': 'block', 'children': ['6', '21', '33', '53', '83', '92', '102', '106', '126']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'pattern_list', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'accessions'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'infoFTP'}; {'id': '11', 'type': 'expression_list', 'children': ['12', '18']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}; {'id': '15', 'type': 'subscript', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '17', 'type': 'string', 'children': [], 'value': "'g'"}; {'id': '18', 'type': 'subscript', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '20', 'type': 'string', 'children': [], 'value': "'i'"}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '26']}; {'id': '23', 'type': 'pattern_list', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'search'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'exclude'}; {'id': '26', 'type': 'expression_list', 'children': ['27', '30']}; {'id': '27', 'type': 'subscript', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '29', 'type': 'string', 'children': [], 'value': "'s'"}; {'id': '30', 'type': 'subscript', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '32', 'type': 'string', 'children': [], 'value': "'e'"}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'FTPs'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'getFTPs'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '40', '41', '42', '43', '48']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'accessions'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'infoFTP'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'search'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'exclude'}; {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'threads'}; {'id': '45', 'type': 'subscript', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '47', 'type': 'string', 'children': [], 'value': "'t'"}; {'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'convert'}; {'id': '50', 'type': 'subscript', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '52', 'type': 'string', 'children': [], 'value': "'convert'"}; {'id': '53', 'type': 'if_statement', 'children': ['54', '59']}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '58'], 'value': 'is'}; {'id': '55', 'type': 'subscript', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '57', 'type': 'string', 'children': [], 'value': "'test'"}; {'id': '58', 'type': 'True', 'children': []}; {'id': '59', 'type': 'block', 'children': ['60', '81']}; {'id': '60', 'type': 'for_statement', 'children': ['61', '62', '63']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'genome'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'FTPs'}; {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}; {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '67', 'type': 'argument_list', 'children': ['68', '69', '78']}; {'id': '68', 'type': 'string', 'children': [], 'value': "'found:'"}; {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}; {'id': '71', 'type': 'string', 'children': [], 'value': "';'"}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'subscript', 'children': ['75', '76']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'genome'}; {'id': '76', 'type': 'unary_operator', 'children': ['77'], 'value': '-'}; {'id': '77', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '78', 'type': 'subscript', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'genome'}; {'id': '80', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '81', 'type': 'return_statement', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'FTPs'}; {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'pool'}; {'id': '86', 'type': 'call', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'Pool'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}; {'id': '89', 'type': 'subscript', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '91', 'type': 'string', 'children': [], 'value': "'t'"}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}; {'id': '93', 'type': 'assignment', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'pool'}; {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'pool'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'imap_unordered'}; {'id': '99', 'type': 'argument_list', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'wgetGenome'}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'FTPs'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}; {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '105', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '106', 'type': 'for_statement', 'children': ['107', '108', '118']}; {'id': '107', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '108', 'type': 'call', 'children': ['109', '110']}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'tqdm'}; {'id': '110', 'type': 'argument_list', 'children': ['111', '112']}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'pool'}; {'id': '112', 'type': 'keyword_argument', 'children': ['113', '114']}; {'id': '113', 'type': 'identifier', 'children': [], 'value': 'total'}; {'id': '114', 'type': 'call', 'children': ['115', '116']}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'accessions'}; {'id': '118', 'type': 'block', 'children': ['119']}; {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '124']}; {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}; {'id': '125', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '126', 'type': 'return_statement', 'children': ['127']}; {'id': '127', 'type': 'identifier', 'children': [], 'value': 'files'}
|
download genomes from NCBI
|
def debug(self, request, message, extra_tags='', fail_silently=False):
add(self.target_name, request, constants.DEBUG, message, extra_tags=extra_tags,
fail_silently=fail_silently)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'debug'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'extra_tags'}; {'id': '9', 'type': 'string', 'children': [], 'value': "''"}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'fail_silently'}; {'id': '12', 'type': 'False', 'children': []}; {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '17', 'type': 'argument_list', 'children': ['18', '21', '22', '25', '26', '29']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'target_name'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'constants'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'DEBUG'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'extra_tags'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'extra_tags'}; {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'fail_silently'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'fail_silently'}
|
Add a message with the ``DEBUG`` level.
|
def close(self):
from matplotlib.pyplot import close
for ax in self.axes[::-1]:
ax.set_xscale('linear')
ax.set_yscale('linear')
ax.cla()
close(self)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'close'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '12', '44']}; {'id': '6', 'type': 'import_from_statement', 'children': ['7', '10']}; {'id': '7', 'type': 'dotted_name', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'matplotlib'}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'pyplot'}; {'id': '10', 'type': 'dotted_name', 'children': ['11']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '12', 'type': 'for_statement', 'children': ['13', '14', '23']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'ax'}; {'id': '14', 'type': 'subscript', 'children': ['15', '18']}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'axes'}; {'id': '18', 'type': 'slice', 'children': ['19', '20', '21']}; {'id': '19', 'type': 'colon', 'children': []}; {'id': '20', 'type': 'colon', 'children': []}; {'id': '21', 'type': 'unary_operator', 'children': ['22'], 'value': '-'}; {'id': '22', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '23', 'type': 'block', 'children': ['24', '31', '38']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}; {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'ax'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'set_xscale'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'linear'"}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'ax'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'set_yscale'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'string', 'children': [], 'value': "'linear'"}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}; {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'ax'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'cla'}; {'id': '43', 'type': 'argument_list', 'children': []}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}; {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}
|
Close the plot and release its memory.
|
def push(self, obj):
rv = getattr(self._local, "stack", None)
if rv is None:
self._local.stack = rv = []
rv.append(obj)
return rv
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'push'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '33', '40']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '12', 'type': 'argument_list', 'children': ['13', '16', '17']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': '_local'}; {'id': '16', 'type': 'string', 'children': [], 'value': '"stack"'}; {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'if_statement', 'children': ['19', '22']}; {'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': 'is'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '21', 'type': 'None', 'children': []}; {'id': '22', 'type': 'block', 'children': ['23']}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '30']}; {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '_local'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'stack'}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '32', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}; {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '40', 'type': 'return_statement', 'children': ['41']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'rv'}
|
Pushes a new item to the stack
|
def filter_repeated(self):
defaults = {
'occurrences': 1,
'interval': 30,
'refresh': 1800
}
if isinstance(self.settings['sensu_plugin'], dict):
defaults.update(self.settings['sensu_plugin'])
occurrences = int(self.event['check'].get(
'occurrences', defaults['occurrences']))
interval = int(self.event['check'].get(
'interval', defaults['interval']))
refresh = int(self.event['check'].get(
'refresh', defaults['refresh']))
if self.event['occurrences'] < occurrences:
self.bail('not enough occurrences')
if (self.event['occurrences'] > occurrences and
self.event['action'] == 'create'):
return
number = int(refresh / interval)
if (number == 0 or
(self.event['occurrences'] - occurrences) % number == 0):
return
self.bail('only handling every ' + str(number) + ' occurrences')
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'filter_repeated'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '19', '41', '60', '79', '98', '114', '133', '142', '162']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'defaults'}; {'id': '9', 'type': 'dictionary', 'children': ['10', '13', '16']}; {'id': '10', 'type': 'pair', 'children': ['11', '12']}; {'id': '11', 'type': 'string', 'children': [], 'value': "'occurrences'"}; {'id': '12', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '13', 'type': 'pair', 'children': ['14', '15']}; {'id': '14', 'type': 'string', 'children': [], 'value': "'interval'"}; {'id': '15', 'type': 'integer', 'children': [], 'value': '30'}; {'id': '16', 'type': 'pair', 'children': ['17', '18']}; {'id': '17', 'type': 'string', 'children': [], 'value': "'refresh'"}; {'id': '18', 'type': 'integer', 'children': [], 'value': '1800'}; {'id': '19', 'type': 'if_statement', 'children': ['20', '29']}; {'id': '20', 'type': 'call', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '28']}; {'id': '23', 'type': 'subscript', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'settings'}; {'id': '27', 'type': 'string', 'children': [], 'value': "'sensu_plugin'"}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'defaults'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'subscript', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'settings'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'sensu_plugin'"}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'occurrences'}; {'id': '44', 'type': 'call', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}; {'id': '47', 'type': 'call', 'children': ['48', '55']}; {'id': '48', 'type': 'attribute', 'children': ['49', '54']}; {'id': '49', 'type': 'subscript', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '53', 'type': 'string', 'children': [], 'value': "'check'"}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '55', 'type': 'argument_list', 'children': ['56', '57']}; {'id': '56', 'type': 'string', 'children': [], 'value': "'occurrences'"}; {'id': '57', 'type': 'subscript', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'defaults'}; {'id': '59', 'type': 'string', 'children': [], 'value': "'occurrences'"}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}; {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'interval'}; {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '74']}; {'id': '67', 'type': 'attribute', 'children': ['68', '73']}; {'id': '68', 'type': 'subscript', 'children': ['69', '72']}; {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '72', 'type': 'string', 'children': [], 'value': "'check'"}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '74', 'type': 'argument_list', 'children': ['75', '76']}; {'id': '75', 'type': 'string', 'children': [], 'value': "'interval'"}; {'id': '76', 'type': 'subscript', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'defaults'}; {'id': '78', 'type': 'string', 'children': [], 'value': "'interval'"}; {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'refresh'}; {'id': '82', 'type': 'call', 'children': ['83', '84']}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}; {'id': '85', 'type': 'call', 'children': ['86', '93']}; {'id': '86', 'type': 'attribute', 'children': ['87', '92']}; {'id': '87', 'type': 'subscript', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '91', 'type': 'string', 'children': [], 'value': "'check'"}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '93', 'type': 'argument_list', 'children': ['94', '95']}; {'id': '94', 'type': 'string', 'children': [], 'value': "'refresh'"}; {'id': '95', 'type': 'subscript', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'defaults'}; {'id': '97', 'type': 'string', 'children': [], 'value': "'refresh'"}; {'id': '98', 'type': 'if_statement', 'children': ['99', '106']}; {'id': '99', 'type': 'comparison_operator', 'children': ['100', '105'], 'value': '<'}; {'id': '100', 'type': 'subscript', 'children': ['101', '104']}; {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '104', 'type': 'string', 'children': [], 'value': "'occurrences'"}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 'occurrences'}; {'id': '106', 'type': 'block', 'children': ['107']}; {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'call', 'children': ['109', '112']}; {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'bail'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}; {'id': '113', 'type': 'string', 'children': [], 'value': "'not enough occurrences'"}; {'id': '114', 'type': 'if_statement', 'children': ['115', '131']}; {'id': '115', 'type': '()', 'children': ['116']}; {'id': '116', 'type': 'boolean_operator', 'children': ['117', '124'], 'value': 'and'}; {'id': '117', 'type': 'comparison_operator', 'children': ['118', '123'], 'value': '>'}; {'id': '118', 'type': 'subscript', 'children': ['119', '122']}; {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '122', 'type': 'string', 'children': [], 'value': "'occurrences'"}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'occurrences'}; {'id': '124', 'type': 'comparison_operator', 'children': ['125', '130'], 'value': '=='}; {'id': '125', 'type': 'subscript', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}; {'id': '127', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '129', 'type': 'string', 'children': [], 'value': "'action'"}; {'id': '130', 'type': 'string', 'children': [], 'value': "'create'"}; {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'return_statement', 'children': []}; {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '136']}; {'id': '135', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '136', 'type': 'call', 'children': ['137', '138']}; {'id': '137', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}; {'id': '139', 'type': 'binary_operator', 'children': ['140', '141'], 'value': '/'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'refresh'}; {'id': '141', 'type': 'identifier', 'children': [], 'value': 'interval'}; {'id': '142', 'type': 'if_statement', 'children': ['143', '160']}; {'id': '143', 'type': '()', 'children': ['144']}; {'id': '144', 'type': 'boolean_operator', 'children': ['145', '148'], 'value': 'or'}; {'id': '145', 'type': 'comparison_operator', 'children': ['146', '147'], 'value': '=='}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '147', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '148', 'type': 'comparison_operator', 'children': ['149', '159'], 'value': '=='}; {'id': '149', 'type': 'binary_operator', 'children': ['150', '158'], 'value': '%'}; {'id': '150', 'type': '()', 'children': ['151']}; {'id': '151', 'type': 'binary_operator', 'children': ['152', '157'], 'value': '-'}; {'id': '152', 'type': 'subscript', 'children': ['153', '156']}; {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '155', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '156', 'type': 'string', 'children': [], 'value': "'occurrences'"}; {'id': '157', 'type': 'identifier', 'children': [], 'value': 'occurrences'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '159', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '160', 'type': 'block', 'children': ['161']}; {'id': '161', 'type': 'return_statement', 'children': []}; {'id': '162', 'type': 'expression_statement', 'children': ['163']}; {'id': '163', 'type': 'call', 'children': ['164', '167']}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}; {'id': '165', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'bail'}; {'id': '167', 'type': 'argument_list', 'children': ['168']}; {'id': '168', 'type': 'binary_operator', 'children': ['169', '175'], 'value': '+'}; {'id': '169', 'type': 'binary_operator', 'children': ['170', '171'], 'value': '+'}; {'id': '170', 'type': 'string', 'children': [], 'value': "'only handling every '"}; {'id': '171', 'type': 'call', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '173', 'type': 'argument_list', 'children': ['174']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '175', 'type': 'string', 'children': [], 'value': "' occurrences'"}
|
Determine whether a check is repeating.
|
def scale_image(image, new_width):
(original_width, original_height) = image.size
aspect_ratio = original_height/float(original_width)
new_height = int(aspect_ratio * new_width)
new_image = image.resize((new_width*2, new_height))
return new_image
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'scale_image'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'image'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'new_width'}; {'id': '6', 'type': 'block', 'children': ['7', '15', '24', '33', '46']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '12']}; {'id': '9', 'type': 'tuple_pattern', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'original_width'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'original_height'}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'image'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'aspect_ratio'}; {'id': '18', 'type': 'binary_operator', 'children': ['19', '20'], 'value': '/'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'original_height'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'original_width'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}; {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'new_height'}; {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'binary_operator', 'children': ['31', '32'], 'value': '*'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'aspect_ratio'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'new_width'}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'new_image'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'image'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'resize'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}; {'id': '41', 'type': 'tuple', 'children': ['42', '45']}; {'id': '42', 'type': 'binary_operator', 'children': ['43', '44'], 'value': '*'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'new_width'}; {'id': '44', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'new_height'}; {'id': '46', 'type': 'return_statement', 'children': ['47']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'new_image'}
|
Resizes an image preserving the aspect ratio.
|
def run(bam_file, sample, out_dir):
out = {}
peaks = sample.get("peaks_files", {}).get("main")
if peaks:
out.update(_reads_in_peaks(bam_file, peaks, sample))
return out
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'bam_file'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'out_dir'}; {'id': '7', 'type': 'block', 'children': ['8', '12', '27', '42']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '11', 'type': 'dictionary', 'children': []}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'peaks'}; {'id': '15', 'type': 'call', 'children': ['16', '25']}; {'id': '16', 'type': 'attribute', 'children': ['17', '24']}; {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '21', 'type': 'argument_list', 'children': ['22', '23']}; {'id': '22', 'type': 'string', 'children': [], 'value': '"peaks_files"'}; {'id': '23', 'type': 'dictionary', 'children': []}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'string', 'children': [], 'value': '"main"'}; {'id': '27', 'type': 'if_statement', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'peaks'}; {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': '_reads_in_peaks'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '40', '41']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'bam_file'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'peaks'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '42', 'type': 'return_statement', 'children': ['43']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'out'}
|
Standard QC metrics for chipseq
|
def saveFormatFileEnc(self, filename, encoding, format):
ret = libxml2mod.xmlSaveFormatFileEnc(filename, self._o, encoding, format)
return ret
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'saveFormatFileEnc'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'encoding'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '8', 'type': 'block', 'children': ['9', '23']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'libxml2mod'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'xmlSaveFormatFileEnc'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '18', '21', '22']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': '_o'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'encoding'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '23', 'type': 'return_statement', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'ret'}
|
Dump an XML document to a file or an URL.
|
def save_file(fullpath, entry):
with tempfile.NamedTemporaryFile('w', delete=False) as file:
tmpfile = file.name
for key, val in entry.items():
print('{}: {}'.format(key, str(val)), file=file)
print('', file=file)
file.write(entry.get_payload())
shutil.move(tmpfile, fullpath)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save_file'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'fullpath'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '6', 'type': 'block', 'children': ['7', '75']}; {'id': '7', 'type': 'with_statement', 'children': ['8', '22']}; {'id': '8', 'type': 'with_clause', 'children': ['9']}; {'id': '9', 'type': 'with_item', 'children': ['10']}; {'id': '10', 'type': 'as_pattern', 'children': ['11', '20']}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'tempfile'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'NamedTemporaryFile'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '17', 'type': 'keyword_argument', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'delete'}; {'id': '19', 'type': 'False', 'children': []}; {'id': '20', 'type': 'as_pattern_target', 'children': ['21']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '22', 'type': 'block', 'children': ['23', '29', '56', '64']}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'tmpfile'}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '29', 'type': 'for_statement', 'children': ['30', '33', '38']}; {'id': '30', 'type': 'pattern_list', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '37', 'type': 'argument_list', 'children': []}; {'id': '38', 'type': 'block', 'children': ['39']}; {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '53']}; {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'string', 'children': [], 'value': "'{}: {}'"}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '47', 'type': 'argument_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}; {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '59', 'type': 'argument_list', 'children': ['60', '61']}; {'id': '60', 'type': 'string', 'children': [], 'value': "''"}; {'id': '61', 'type': 'keyword_argument', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}; {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}; {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'get_payload'}; {'id': '74', 'type': 'argument_list', 'children': []}; {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '80']}; {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'shutil'}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'move'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '82']}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'tmpfile'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'fullpath'}
|
Save a message file out, without mangling the headers
|
def unfix_parameters(self):
for W, b in zip(self.W_list, self.b_list):
W.unfix()
b.unfix()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'unfix_parameters'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'for_statement', 'children': ['7', '10', '19']}; {'id': '7', 'type': 'pattern_list', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'W'}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '12', 'type': 'argument_list', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'W_list'}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'b_list'}; {'id': '19', 'type': 'block', 'children': ['20', '26']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'W'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'unfix'}; {'id': '25', 'type': 'argument_list', 'children': []}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'unfix'}; {'id': '31', 'type': 'argument_list', 'children': []}
|
Helper function that unfixes all parameters
|
def secure(self):
log.debug('ConCache securing sockets')
if os.path.exists(self.cache_sock):
os.chmod(self.cache_sock, 0o600)
if os.path.exists(self.update_sock):
os.chmod(self.update_sock, 0o600)
if os.path.exists(self.upd_t_sock):
os.chmod(self.upd_t_sock, 0o600)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'secure'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '13', '35', '57']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'string', 'children': [], 'value': "'ConCache securing sockets'"}; {'id': '13', 'type': 'if_statement', 'children': ['14', '24']}; {'id': '14', 'type': 'call', 'children': ['15', '20']}; {'id': '15', 'type': 'attribute', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'cache_sock'}; {'id': '24', 'type': 'block', 'children': ['25']}; {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'chmod'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '34']}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'cache_sock'}; {'id': '34', 'type': 'integer', 'children': [], 'value': '0o600'}; {'id': '35', 'type': 'if_statement', 'children': ['36', '46']}; {'id': '36', 'type': 'call', 'children': ['37', '42']}; {'id': '37', 'type': 'attribute', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'update_sock'}; {'id': '46', 'type': 'block', 'children': ['47']}; {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'chmod'}; {'id': '52', 'type': 'argument_list', 'children': ['53', '56']}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'update_sock'}; {'id': '56', 'type': 'integer', 'children': [], 'value': '0o600'}; {'id': '57', 'type': 'if_statement', 'children': ['58', '68']}; {'id': '58', 'type': 'call', 'children': ['59', '64']}; {'id': '59', 'type': 'attribute', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}; {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'upd_t_sock'}; {'id': '68', 'type': 'block', 'children': ['69']}; {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}; {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'chmod'}; {'id': '74', 'type': 'argument_list', 'children': ['75', '78']}; {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'upd_t_sock'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '0o600'}
|
secure the sockets for root-only access
|
def _get_snpeff_cmd(cmd_name, datadir, data, out_file):
resources = config_utils.get_resources("snpeff", data["config"])
jvm_opts = resources.get("jvm_opts", ["-Xms750m", "-Xmx3g"])
jvm_opts = config_utils.adjust_opts(jvm_opts, {"algorithm": {"memory_adjust":
{"direction": "increase",
"maximum": "30000M",
"magnitude": max(2, dd.get_cores(data))}}})
memory = " ".join(jvm_opts)
snpeff = config_utils.get_program("snpEff", data["config"])
java_args = "-Djava.io.tmpdir=%s" % utils.safe_makedir(os.path.join(os.path.dirname(out_file), "tmp"))
export = "unset JAVA_HOME && export PATH=%s:\"$PATH\" && " % (utils.get_java_binpath())
cmd = "{export} {snpeff} {memory} {java_args} {cmd_name} -dataDir {datadir}"
return cmd.format(**locals())
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_snpeff_cmd'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cmd_name'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'datadir'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'out_file'}; {'id': '8', 'type': 'block', 'children': ['9', '21', '33', '67', '76', '88', '114', '125', '129']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'resources'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'config_utils'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'get_resources'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '18']}; {'id': '17', 'type': 'string', 'children': [], 'value': '"snpeff"'}; {'id': '18', 'type': 'subscript', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '20', 'type': 'string', 'children': [], 'value': '"config"'}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'jvm_opts'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'resources'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '30']}; {'id': '29', 'type': 'string', 'children': [], 'value': '"jvm_opts"'}; {'id': '30', 'type': 'list', 'children': ['31', '32'], 'value': '["-Xms750m", "-Xmx3g"]'}; {'id': '31', 'type': 'string', 'children': [], 'value': '"-Xms750m"'}; {'id': '32', 'type': 'string', 'children': [], 'value': '"-Xmx3g"'}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'jvm_opts'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'config_utils'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'adjust_opts'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'jvm_opts'}; {'id': '42', 'type': 'dictionary', 'children': ['43']}; {'id': '43', 'type': 'pair', 'children': ['44', '45']}; {'id': '44', 'type': 'string', 'children': [], 'value': '"algorithm"'}; {'id': '45', 'type': 'dictionary', 'children': ['46']}; {'id': '46', 'type': 'pair', 'children': ['47', '48']}; {'id': '47', 'type': 'string', 'children': [], 'value': '"memory_adjust"'}; {'id': '48', 'type': 'dictionary', 'children': ['49', '52', '55']}; {'id': '49', 'type': 'pair', 'children': ['50', '51']}; {'id': '50', 'type': 'string', 'children': [], 'value': '"direction"'}; {'id': '51', 'type': 'string', 'children': [], 'value': '"increase"'}; {'id': '52', 'type': 'pair', 'children': ['53', '54']}; {'id': '53', 'type': 'string', 'children': [], 'value': '"maximum"'}; {'id': '54', 'type': 'string', 'children': [], 'value': '"30000M"'}; {'id': '55', 'type': 'pair', 'children': ['56', '57']}; {'id': '56', 'type': 'string', 'children': [], 'value': '"magnitude"'}; {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '59', 'type': 'argument_list', 'children': ['60', '61']}; {'id': '60', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'dd'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'get_cores'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'memory'}; {'id': '70', 'type': 'call', 'children': ['71', '74']}; {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'string', 'children': [], 'value': '" "'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'jvm_opts'}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}; {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'snpeff'}; {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'config_utils'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'get_program'}; {'id': '83', 'type': 'argument_list', 'children': ['84', '85']}; {'id': '84', 'type': 'string', 'children': [], 'value': '"snpEff"'}; {'id': '85', 'type': 'subscript', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '87', 'type': 'string', 'children': [], 'value': '"config"'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}; {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'java_args'}; {'id': '91', 'type': 'binary_operator', 'children': ['92', '93'], 'value': '%'}; {'id': '92', 'type': 'string', 'children': [], 'value': '"-Djava.io.tmpdir=%s"'}; {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'safe_makedir'}; {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '104']}; {'id': '99', 'type': 'attribute', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '104', 'type': 'argument_list', 'children': ['105', '113']}; {'id': '105', 'type': 'call', 'children': ['106', '111']}; {'id': '106', 'type': 'attribute', 'children': ['107', '110']}; {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'dirname'}; {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'out_file'}; {'id': '113', 'type': 'string', 'children': [], 'value': '"tmp"'}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}; {'id': '115', 'type': 'assignment', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'export'}; {'id': '117', 'type': 'binary_operator', 'children': ['118', '119'], 'value': '%'}; {'id': '118', 'type': 'string', 'children': [], 'value': '"unset JAVA_HOME && export PATH=%s:\\"$PATH\\" && "'}; {'id': '119', 'type': '()', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '124']}; {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'get_java_binpath'}; {'id': '124', 'type': 'argument_list', 'children': []}; {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'assignment', 'children': ['127', '128']}; {'id': '127', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '128', 'type': 'string', 'children': [], 'value': '"{export} {snpeff} {memory} {java_args} {cmd_name} -dataDir {datadir}"'}; {'id': '129', 'type': 'return_statement', 'children': ['130']}; {'id': '130', 'type': 'call', 'children': ['131', '134']}; {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '133', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}; {'id': '135', 'type': 'dictionary_splat', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '138']}; {'id': '137', 'type': 'identifier', 'children': [], 'value': 'locals'}; {'id': '138', 'type': 'argument_list', 'children': []}
|
Retrieve snpEff base command line.
|
def delay_1(year):
months = trunc(((235 * year) - 234) / 19)
parts = 12084 + (13753 * months)
day = trunc((months * 29) + parts / 25920)
if ((3 * (day + 1)) % 7) < 3:
day += 1
return day
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'delay_1'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'year'}; {'id': '5', 'type': 'block', 'children': ['6', '21', '30', '44', '62']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'months'}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'trunc'}; {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'binary_operator', 'children': ['13', '20'], 'value': '/'}; {'id': '13', 'type': '()', 'children': ['14']}; {'id': '14', 'type': 'binary_operator', 'children': ['15', '19'], 'value': '-'}; {'id': '15', 'type': '()', 'children': ['16']}; {'id': '16', 'type': 'binary_operator', 'children': ['17', '18'], 'value': '*'}; {'id': '17', 'type': 'integer', 'children': [], 'value': '235'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'year'}; {'id': '19', 'type': 'integer', 'children': [], 'value': '234'}; {'id': '20', 'type': 'integer', 'children': [], 'value': '19'}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'parts'}; {'id': '24', 'type': 'binary_operator', 'children': ['25', '26'], 'value': '+'}; {'id': '25', 'type': 'integer', 'children': [], 'value': '12084'}; {'id': '26', 'type': '()', 'children': ['27']}; {'id': '27', 'type': 'binary_operator', 'children': ['28', '29'], 'value': '*'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '13753'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'months'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'day'}; {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'trunc'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'binary_operator', 'children': ['37', '41'], 'value': '+'}; {'id': '37', 'type': '()', 'children': ['38']}; {'id': '38', 'type': 'binary_operator', 'children': ['39', '40'], 'value': '*'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'months'}; {'id': '40', 'type': 'integer', 'children': [], 'value': '29'}; {'id': '41', 'type': 'binary_operator', 'children': ['42', '43'], 'value': '/'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'parts'}; {'id': '43', 'type': 'integer', 'children': [], 'value': '25920'}; {'id': '44', 'type': 'if_statement', 'children': ['45', '57']}; {'id': '45', 'type': 'comparison_operator', 'children': ['46', '56'], 'value': '<'}; {'id': '46', 'type': '()', 'children': ['47']}; {'id': '47', 'type': 'binary_operator', 'children': ['48', '55'], 'value': '%'}; {'id': '48', 'type': '()', 'children': ['49']}; {'id': '49', 'type': 'binary_operator', 'children': ['50', '51'], 'value': '*'}; {'id': '50', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '51', 'type': '()', 'children': ['52']}; {'id': '52', 'type': 'binary_operator', 'children': ['53', '54'], 'value': '+'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'day'}; {'id': '54', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '55', 'type': 'integer', 'children': [], 'value': '7'}; {'id': '56', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}; {'id': '59', 'type': 'augmented_assignment', 'children': ['60', '61'], 'value': '+='}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'day'}; {'id': '61', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '62', 'type': 'return_statement', 'children': ['63']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'day'}
|
Test for delay of start of new year and to avoid
|
def draw(self):
if not self.visible:
return
if self.focus:
pygame.draw.rect(self.window, self.focusColor, self.focusedImageRect, 1)
self.window.blit(self.textImage, self.loc)
if self.focus:
self.cursorMsCounter = self.cursorMsCounter + self.clock.get_time()
if self.cursorMsCounter >= self.cursorSwitchMs:
self.cursorMsCounter = self.cursorMsCounter % self.cursorSwitchMs
self.cursorVisible = not self.cursorVisible
if self.cursorVisible:
cursorOffset = self.font.size(self.text[:self.cursorPosition])[0]
if self.cursorPosition > 0:
cursorOffset = cursorOffset - 1
if cursorOffset < self.width:
self.cursorLoc[0] = self.loc[0] + cursorOffset
self.window.blit(self.cursorSurface, self.cursorLoc)
self.clock.tick()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'draw'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '13', '36', '50']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '11']}; {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'visible'}; {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': []}; {'id': '13', 'type': 'if_statement', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'focus'}; {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'call', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'pygame'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'draw'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'rect'}; {'id': '25', 'type': 'argument_list', 'children': ['26', '29', '32', '35']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'window'}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'focusColor'}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'focusedImageRect'}; {'id': '35', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}; {'id': '37', 'type': 'call', 'children': ['38', '43']}; {'id': '38', 'type': 'attribute', 'children': ['39', '42']}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'window'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'blit'}; {'id': '43', 'type': 'argument_list', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'textImage'}; {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'loc'}; {'id': '50', 'type': 'if_statement', 'children': ['51', '54']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'focus'}; {'id': '54', 'type': 'block', 'children': ['55', '71', '101', '175']}; {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'cursorMsCounter'}; {'id': '60', 'type': 'binary_operator', 'children': ['61', '64'], 'value': '+'}; {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'cursorMsCounter'}; {'id': '64', 'type': 'call', 'children': ['65', '70']}; {'id': '65', 'type': 'attribute', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'clock'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'get_time'}; {'id': '70', 'type': 'argument_list', 'children': []}; {'id': '71', 'type': 'if_statement', 'children': ['72', '79']}; {'id': '72', 'type': 'comparison_operator', 'children': ['73', '76'], 'value': '>='}; {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'cursorMsCounter'}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'cursorSwitchMs'}; {'id': '79', 'type': 'block', 'children': ['80', '92']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}; {'id': '81', 'type': 'assignment', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'cursorMsCounter'}; {'id': '85', 'type': 'binary_operator', 'children': ['86', '89'], 'value': '%'}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'cursorMsCounter'}; {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'cursorSwitchMs'}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}; {'id': '93', 'type': 'assignment', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'cursorVisible'}; {'id': '97', 'type': 'not_operator', 'children': ['98']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'cursorVisible'}; {'id': '101', 'type': 'if_statement', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'cursorVisible'}; {'id': '105', 'type': 'block', 'children': ['106', '127', '140']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}; {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'cursorOffset'}; {'id': '109', 'type': 'subscript', 'children': ['110', '126']}; {'id': '110', 'type': 'call', 'children': ['111', '116']}; {'id': '111', 'type': 'attribute', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}; {'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'font'}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}; {'id': '117', 'type': 'subscript', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}; {'id': '119', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '121', 'type': 'slice', 'children': ['122', '123']}; {'id': '122', 'type': 'colon', 'children': []}; {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '125', 'type': 'identifier', 'children': [], 'value': 'cursorPosition'}; {'id': '126', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '127', 'type': 'if_statement', 'children': ['128', '133']}; {'id': '128', 'type': 'comparison_operator', 'children': ['129', '132'], 'value': '>'}; {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '131', 'type': 'identifier', 'children': [], 'value': 'cursorPosition'}; {'id': '132', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '133', 'type': 'block', 'children': ['134']}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}; {'id': '135', 'type': 'assignment', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'cursorOffset'}; {'id': '137', 'type': 'binary_operator', 'children': ['138', '139'], 'value': '-'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'cursorOffset'}; {'id': '139', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '140', 'type': 'if_statement', 'children': ['141', '146']}; {'id': '141', 'type': 'comparison_operator', 'children': ['142', '143'], 'value': '<'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'cursorOffset'}; {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '145', 'type': 'identifier', 'children': [], 'value': 'width'}; {'id': '146', 'type': 'block', 'children': ['147', '161']}; {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'assignment', 'children': ['149', '154']}; {'id': '149', 'type': 'subscript', 'children': ['150', '153']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}; {'id': '151', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'cursorLoc'}; {'id': '153', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '154', 'type': 'binary_operator', 'children': ['155', '160'], 'value': '+'}; {'id': '155', 'type': 'subscript', 'children': ['156', '159']}; {'id': '156', 'type': 'attribute', 'children': ['157', '158']}; {'id': '157', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'loc'}; {'id': '159', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'cursorOffset'}; {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'call', 'children': ['163', '168']}; {'id': '163', 'type': 'attribute', 'children': ['164', '167']}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}; {'id': '165', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'window'}; {'id': '167', 'type': 'identifier', 'children': [], 'value': 'blit'}; {'id': '168', 'type': 'argument_list', 'children': ['169', '172']}; {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '171', 'type': 'identifier', 'children': [], 'value': 'cursorSurface'}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}; {'id': '173', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'cursorLoc'}; {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'call', 'children': ['177', '182']}; {'id': '177', 'type': 'attribute', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}; {'id': '179', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'clock'}; {'id': '181', 'type': 'identifier', 'children': [], 'value': 'tick'}; {'id': '182', 'type': 'argument_list', 'children': []}
|
Draws the Text in the window.
|
def convert(input_file_name, **kwargs):
delimiter = kwargs["delimiter"] or ","
quotechar = kwargs["quotechar"] or "|"
if six.PY2:
delimiter = delimiter.encode("utf-8")
quotechar = quotechar.encode("utf-8")
with open(input_file_name, "rb") as input_file:
reader = csv.reader(input_file,
encoding="utf-8",
delimiter=delimiter,
quotechar=quotechar)
csv_headers = []
if not kwargs.get("no_header"):
csv_headers = next(reader)
csv_rows = [row for row in reader if row]
if not csv_headers and len(csv_rows) > 0:
end = len(csv_rows[0]) + 1
csv_headers = ["Column {}".format(n) for n in range(1, end)]
html = render_template(csv_headers, csv_rows, **kwargs)
return freeze_js(html)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'convert'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'input_file_name'}; {'id': '5', 'type': 'dictionary_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '7', 'type': 'block', 'children': ['8', '16', '24', '47', '146', '156']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'delimiter'}; {'id': '11', 'type': 'boolean_operator', 'children': ['12', '15'], 'value': 'or'}; {'id': '12', 'type': 'subscript', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '14', 'type': 'string', 'children': [], 'value': '"delimiter"'}; {'id': '15', 'type': 'string', 'children': [], 'value': '","'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'quotechar'}; {'id': '19', 'type': 'boolean_operator', 'children': ['20', '23'], 'value': 'or'}; {'id': '20', 'type': 'subscript', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '22', 'type': 'string', 'children': [], 'value': '"quotechar"'}; {'id': '23', 'type': 'string', 'children': [], 'value': '"|"'}; {'id': '24', 'type': 'if_statement', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'six'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'PY2'}; {'id': '28', 'type': 'block', 'children': ['29', '38']}; {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'delimiter'}; {'id': '32', 'type': 'call', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'delimiter'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'encode'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'string', 'children': [], 'value': '"utf-8"'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}; {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'quotechar'}; {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'quotechar'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'encode'}; {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'string', 'children': [], 'value': '"utf-8"'}; {'id': '47', 'type': 'with_statement', 'children': ['48', '58']}; {'id': '48', 'type': 'with_clause', 'children': ['49']}; {'id': '49', 'type': 'with_item', 'children': ['50']}; {'id': '50', 'type': 'as_pattern', 'children': ['51', '56']}; {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '53', 'type': 'argument_list', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'input_file_name'}; {'id': '55', 'type': 'string', 'children': [], 'value': '"rb"'}; {'id': '56', 'type': 'as_pattern_target', 'children': ['57']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'input_file'}; {'id': '58', 'type': 'block', 'children': ['59', '77', '81', '97', '107']}; {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'reader'}; {'id': '62', 'type': 'call', 'children': ['63', '66']}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'csv'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'reader'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '68', '71', '74']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'input_file'}; {'id': '68', 'type': 'keyword_argument', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'encoding'}; {'id': '70', 'type': 'string', 'children': [], 'value': '"utf-8"'}; {'id': '71', 'type': 'keyword_argument', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'delimiter'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'delimiter'}; {'id': '74', 'type': 'keyword_argument', 'children': ['75', '76']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'quotechar'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'quotechar'}; {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'csv_headers'}; {'id': '80', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '81', 'type': 'if_statement', 'children': ['82', '89']}; {'id': '82', 'type': 'not_operator', 'children': ['83']}; {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'string', 'children': [], 'value': '"no_header"'}; {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}; {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'csv_headers'}; {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'next'}; {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'reader'}; {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'csv_rows'}; {'id': '100', 'type': 'list_comprehension', 'children': ['101', '102', '105']}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '102', 'type': 'for_in_clause', 'children': ['103', '104']}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'reader'}; {'id': '105', 'type': 'if_clause', 'children': ['106']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '107', 'type': 'if_statement', 'children': ['108', '117']}; {'id': '108', 'type': 'boolean_operator', 'children': ['109', '111'], 'value': 'and'}; {'id': '109', 'type': 'not_operator', 'children': ['110']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'csv_headers'}; {'id': '111', 'type': 'comparison_operator', 'children': ['112', '116'], 'value': '>'}; {'id': '112', 'type': 'call', 'children': ['113', '114']}; {'id': '113', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'csv_rows'}; {'id': '116', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '117', 'type': 'block', 'children': ['118', '129']}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}; {'id': '119', 'type': 'assignment', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '121', 'type': 'binary_operator', 'children': ['122', '128'], 'value': '+'}; {'id': '122', 'type': 'call', 'children': ['123', '124']}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}; {'id': '125', 'type': 'subscript', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'csv_rows'}; {'id': '127', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '128', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '132']}; {'id': '131', 'type': 'identifier', 'children': [], 'value': 'csv_headers'}; {'id': '132', 'type': 'list_comprehension', 'children': ['133', '139']}; {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}; {'id': '135', 'type': 'string', 'children': [], 'value': '"Column {}"'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '139', 'type': 'for_in_clause', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '143', 'type': 'argument_list', 'children': ['144', '145']}; {'id': '144', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '145', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}; {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '149', 'type': 'call', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'render_template'}; {'id': '151', 'type': 'argument_list', 'children': ['152', '153', '154']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'csv_headers'}; {'id': '153', 'type': 'identifier', 'children': [], 'value': 'csv_rows'}; {'id': '154', 'type': 'dictionary_splat', 'children': ['155']}; {'id': '155', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '156', 'type': 'return_statement', 'children': ['157']}; {'id': '157', 'type': 'call', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'freeze_js'}; {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'html'}
|
Convert CSV file to HTML table
|
def determine_2(self, container_name, container_alias, meta, val):
if container_alias is not NotSpecified:
return container_alias
return container_name[container_name.rfind(":")+1:].replace('/', '-')
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'determine_2'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'container_name'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'container_alias'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'meta'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '9', 'type': 'block', 'children': ['10', '17']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '14']}; {'id': '11', 'type': 'comparison_operator', 'children': ['12', '13'], 'value': 'is not'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'container_alias'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'NotSpecified'}; {'id': '14', 'type': 'block', 'children': ['15']}; {'id': '15', 'type': 'return_statement', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'container_alias'}; {'id': '17', 'type': 'return_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '33']}; {'id': '19', 'type': 'attribute', 'children': ['20', '32']}; {'id': '20', 'type': 'subscript', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'container_name'}; {'id': '22', 'type': 'slice', 'children': ['23', '31']}; {'id': '23', 'type': 'binary_operator', 'children': ['24', '30'], 'value': '+'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'container_name'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'rfind'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}; {'id': '29', 'type': 'string', 'children': [], 'value': '":"'}; {'id': '30', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '31', 'type': 'colon', 'children': []}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'replace'}; {'id': '33', 'type': 'argument_list', 'children': ['34', '35']}; {'id': '34', 'type': 'string', 'children': [], 'value': "'/'"}; {'id': '35', 'type': 'string', 'children': [], 'value': "'-'"}
|
Default the alias to the name of the container
|
def read_nb_content(cells, mod_name):
"Build a dictionary containing the position of the `cells`."
doc_fns = {}
for i, cell in enumerate(cells):
if cell['cell_type'] == 'code':
for match in SHOW_DOC_RE.findall(cell['source']):
doc_fns[match] = i
return doc_fns
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'read_nb_content'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cells'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'mod_name'}; {'id': '6', 'type': 'block', 'children': ['7', '9', '13', '46']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'string', 'children': [], 'value': '"Build a dictionary containing the position of the `cells`."'}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'doc_fns'}; {'id': '12', 'type': 'dictionary', 'children': []}; {'id': '13', 'type': 'for_statement', 'children': ['14', '17', '21']}; {'id': '14', 'type': 'pattern_list', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'cell'}; {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'cells'}; {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'if_statement', 'children': ['23', '28']}; {'id': '23', 'type': 'comparison_operator', 'children': ['24', '27'], 'value': '=='}; {'id': '24', 'type': 'subscript', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'cell'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'cell_type'"}; {'id': '27', 'type': 'string', 'children': [], 'value': "'code'"}; {'id': '28', 'type': 'block', 'children': ['29']}; {'id': '29', 'type': 'for_statement', 'children': ['30', '31', '39']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'SHOW_DOC_RE'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'findall'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'cell'}; {'id': '38', 'type': 'string', 'children': [], 'value': "'source'"}; {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}; {'id': '41', 'type': 'assignment', 'children': ['42', '45']}; {'id': '42', 'type': 'subscript', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'doc_fns'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '46', 'type': 'return_statement', 'children': ['47']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'doc_fns'}
|
Build a dictionary containing the position of the `cells`.
|
def _read_single_point_data(self):
temp_dict = read_pattern(
self.text, {
"final_energy":
r"\s*SCF\s+energy in the final basis set\s+=\s*([\d\-\.]+)"
})
if temp_dict.get('final_energy') == None:
self.data['final_energy'] = None
else:
self.data['final_energy'] = float(temp_dict.get('final_energy')[-1][0])
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_read_single_point_data'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '19']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'temp_dict'}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'read_pattern'}; {'id': '11', 'type': 'argument_list', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '15', 'type': 'dictionary', 'children': ['16']}; {'id': '16', 'type': 'pair', 'children': ['17', '18']}; {'id': '17', 'type': 'string', 'children': [], 'value': '"final_energy"'}; {'id': '18', 'type': 'string', 'children': [], 'value': 'r"\\s*SCF\\s+energy in the final basis set\\s+=\\s*([\\d\\-\\.]+)"'}; {'id': '19', 'type': 'if_statement', 'children': ['20', '28', '37']}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '27'], 'value': '=='}; {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'temp_dict'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'string', 'children': [], 'value': "'final_energy'"}; {'id': '27', 'type': 'None', 'children': []}; {'id': '28', 'type': 'block', 'children': ['29']}; {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '36']}; {'id': '31', 'type': 'subscript', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '35', 'type': 'string', 'children': [], 'value': "'final_energy'"}; {'id': '36', 'type': 'None', 'children': []}; {'id': '37', 'type': 'else_clause', 'children': ['38']}; {'id': '38', 'type': 'block', 'children': ['39']}; {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '46']}; {'id': '41', 'type': 'subscript', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '45', 'type': 'string', 'children': [], 'value': "'final_energy'"}; {'id': '46', 'type': 'call', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}; {'id': '49', 'type': 'subscript', 'children': ['50', '59']}; {'id': '50', 'type': 'subscript', 'children': ['51', '57']}; {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'temp_dict'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'string', 'children': [], 'value': "'final_energy'"}; {'id': '57', 'type': 'unary_operator', 'children': ['58'], 'value': '-'}; {'id': '58', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '59', 'type': 'integer', 'children': [], 'value': '0'}
|
Parses final free energy information from single-point calculations.
|
def paused_partitions(self):
return set(partition for partition in self.assignment
if self.is_paused(partition))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'paused_partitions'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '9', 'type': 'generator_expression', 'children': ['10', '11', '16']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'partition'}; {'id': '11', 'type': 'for_in_clause', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'partition'}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'assignment'}; {'id': '16', 'type': 'if_clause', 'children': ['17']}; {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'is_paused'}; {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'partition'}
|
Return current set of paused TopicPartitions.
|
def csvtolist(inputstr):
reader = csv.reader([inputstr], skipinitialspace=True)
output = []
for r in reader:
output += r
return output
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'csvtolist'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'inputstr'}; {'id': '5', 'type': 'block', 'children': ['6', '19', '23', '31']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'reader'}; {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'csv'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'reader'}; {'id': '13', 'type': 'argument_list', 'children': ['14', '16']}; {'id': '14', 'type': 'list', 'children': ['15'], 'value': '[inputstr]'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'inputstr'}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'skipinitialspace'}; {'id': '18', 'type': 'True', 'children': []}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '22', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '23', 'type': 'for_statement', 'children': ['24', '25', '26']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'reader'}; {'id': '26', 'type': 'block', 'children': ['27']}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'augmented_assignment', 'children': ['29', '30'], 'value': '+='}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '31', 'type': 'return_statement', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'output'}
|
converts a csv string into a list
|
def benchmark(N, gates):
qubits = list(range(0, N))
ket = qf.zero_state(N)
for n in range(0, N):
ket = qf.H(n).run(ket)
for _ in range(0, (gates-N)//3):
qubit0, qubit1 = random.sample(qubits, 2)
ket = qf.X(qubit0).run(ket)
ket = qf.T(qubit1).run(ket)
ket = qf.CNOT(qubit0, qubit1).run(ket)
return ket.vec.tensor
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'benchmark'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'gates'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '27', '49', '117']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'qubits'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'qf'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'zero_state'}; {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '27', 'type': 'for_statement', 'children': ['28', '29', '34']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '31', 'type': 'argument_list', 'children': ['32', '33']}; {'id': '32', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '34', 'type': 'block', 'children': ['35']}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '38', 'type': 'call', 'children': ['39', '47']}; {'id': '39', 'type': 'attribute', 'children': ['40', '46']}; {'id': '40', 'type': 'call', 'children': ['41', '44']}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'qf'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'H'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '49', 'type': 'for_statement', 'children': ['50', '51', '61']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '53', 'type': 'argument_list', 'children': ['54', '55']}; {'id': '54', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '55', 'type': 'binary_operator', 'children': ['56', '60'], 'value': '//'}; {'id': '56', 'type': '()', 'children': ['57']}; {'id': '57', 'type': 'binary_operator', 'children': ['58', '59'], 'value': '-'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'gates'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '60', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '61', 'type': 'block', 'children': ['62', '74', '88', '102']}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}; {'id': '63', 'type': 'assignment', 'children': ['64', '67']}; {'id': '64', 'type': 'pattern_list', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'qubit0'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'qubit1'}; {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '71', 'type': 'argument_list', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'qubits'}; {'id': '73', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}; {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '77', 'type': 'call', 'children': ['78', '86']}; {'id': '78', 'type': 'attribute', 'children': ['79', '85']}; {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'qf'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'X'}; {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'qubit0'}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}; {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '91', 'type': 'call', 'children': ['92', '100']}; {'id': '92', 'type': 'attribute', 'children': ['93', '99']}; {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'qf'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'T'}; {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'qubit1'}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}; {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '105', 'type': 'call', 'children': ['106', '115']}; {'id': '106', 'type': 'attribute', 'children': ['107', '114']}; {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'qf'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'CNOT'}; {'id': '111', 'type': 'argument_list', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'qubit0'}; {'id': '113', 'type': 'identifier', 'children': [], 'value': 'qubit1'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '115', 'type': 'argument_list', 'children': ['116']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '117', 'type': 'return_statement', 'children': ['118']}; {'id': '118', 'type': 'attribute', 'children': ['119', '122']}; {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'ket'}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'vec'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'tensor'}
|
Create and run a circuit with N qubits and given number of gates
|
def load(self, path):
path = os.path.normpath(path)
mtime = os.stat(path).st_mtime
if path not in self or self[path].mtime != mtime:
manifest = self.build(path)
self[path] = self.manifest_mod(manifest, mtime)
return self[path].manifest
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'load'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '29', '63']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '10', 'type': 'call', 'children': ['11', '16']}; {'id': '11', 'type': 'attribute', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'normpath'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'mtime'}; {'id': '21', 'type': 'attribute', 'children': ['22', '28']}; {'id': '22', 'type': 'call', 'children': ['23', '26']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'stat'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'st_mtime'}; {'id': '29', 'type': 'if_statement', 'children': ['30', '41']}; {'id': '30', 'type': 'boolean_operator', 'children': ['31', '34'], 'value': 'or'}; {'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': 'not in'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '40'], 'value': '!='}; {'id': '35', 'type': 'attribute', 'children': ['36', '39']}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'mtime'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'mtime'}; {'id': '41', 'type': 'block', 'children': ['42', '51']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}; {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'manifest'}; {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'build'}; {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '56']}; {'id': '53', 'type': 'subscript', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '56', 'type': 'call', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'manifest_mod'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'manifest'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'mtime'}; {'id': '63', 'type': 'return_statement', 'children': ['64']}; {'id': '64', 'type': 'attribute', 'children': ['65', '68']}; {'id': '65', 'type': 'subscript', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'manifest'}
|
Load a manifest at path or return a suitable manifest already loaded.
|
def to_snake_case(s):
return re.sub('([^_A-Z])([A-Z])', lambda m: m.group(1) + '_' + m.group(2).lower(), s)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_snake_case'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'sub'}; {'id': '11', 'type': 'argument_list', 'children': ['12', '13', '35']}; {'id': '12', 'type': 'string', 'children': [], 'value': "'([^_A-Z])([A-Z])'"}; {'id': '13', 'type': 'lambda', 'children': ['14', '16']}; {'id': '14', 'type': 'lambda_parameters', 'children': ['15']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '16', 'type': 'binary_operator', 'children': ['17', '25'], 'value': '+'}; {'id': '17', 'type': 'binary_operator', 'children': ['18', '24'], 'value': '+'}; {'id': '18', 'type': 'call', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}; {'id': '23', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '24', 'type': 'string', 'children': [], 'value': "'_'"}; {'id': '25', 'type': 'call', 'children': ['26', '34']}; {'id': '26', 'type': 'attribute', 'children': ['27', '33']}; {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '34', 'type': 'argument_list', 'children': []}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 's'}
|
Converts camel-case identifiers to snake-case.
|
def cleanup(self):
for future in self.futures:
future.cancel()
self.executor.shutdown(wait=10)
if self.ssh.get_transport() != None:
self.ssh.close()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cleanup'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '18', '29']}; {'id': '6', 'type': 'for_statement', 'children': ['7', '8', '11']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'future'}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'futures'}; {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'future'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'cancel'}; {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'call', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'executor'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'shutdown'}; {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'wait'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '29', 'type': 'if_statement', 'children': ['30', '39']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '38'], 'value': '!='}; {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'ssh'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'get_transport'}; {'id': '37', 'type': 'argument_list', 'children': []}; {'id': '38', 'type': 'None', 'children': []}; {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}; {'id': '41', 'type': 'call', 'children': ['42', '47']}; {'id': '42', 'type': 'attribute', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'ssh'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '47', 'type': 'argument_list', 'children': []}
|
Release resources used during shell execution
|
def division_content(self, election_day, division, special=False):
from electionnight.models import PageType
division_type = ContentType.objects.get_for_model(division)
page_type = PageType.objects.get(
model_type=division_type,
election_day=election_day,
division_level=division.level,
)
page_content = self.get(
content_type__pk=division_type.pk,
object_id=division.pk,
election_day=election_day,
special_election=special,
)
page_type_content = self.get(
content_type=ContentType.objects.get_for_model(page_type),
object_id=page_type.pk,
election_day=election_day,
)
return {
"site": self.site_content(election_day)["site"],
"page_type": self.serialize_content_blocks(page_type_content),
"page": self.serialize_content_blocks(page_content),
}
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'division_content'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'election_day'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'division'}; {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'special'}; {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '17', '28', '49', '73', '99']}; {'id': '11', 'type': 'import_from_statement', 'children': ['12', '15']}; {'id': '12', 'type': 'dotted_name', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'electionnight'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'models'}; {'id': '15', 'type': 'dotted_name', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'PageType'}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'division_type'}; {'id': '20', 'type': 'call', 'children': ['21', '26']}; {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'ContentType'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'get_for_model'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'division'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}; {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'page_type'}; {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'PageType'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '37', 'type': 'argument_list', 'children': ['38', '41', '44']}; {'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'model_type'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'division_type'}; {'id': '41', 'type': 'keyword_argument', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'election_day'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'election_day'}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'division_level'}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'division'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'page_content'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '62', '67', '70']}; {'id': '57', 'type': 'keyword_argument', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'content_type__pk'}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'division_type'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'pk'}; {'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'object_id'}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'division'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'pk'}; {'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'election_day'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'election_day'}; {'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'special_election'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'special'}; {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'page_type_content'}; {'id': '76', 'type': 'call', 'children': ['77', '80']}; {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '91', '96']}; {'id': '81', 'type': 'keyword_argument', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'content_type'}; {'id': '83', 'type': 'call', 'children': ['84', '89']}; {'id': '84', 'type': 'attribute', 'children': ['85', '88']}; {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'ContentType'}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'get_for_model'}; {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'page_type'}; {'id': '91', 'type': 'keyword_argument', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'object_id'}; {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'page_type'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'pk'}; {'id': '96', 'type': 'keyword_argument', 'children': ['97', '98']}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'election_day'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'election_day'}; {'id': '99', 'type': 'return_statement', 'children': ['100']}; {'id': '100', 'type': 'dictionary', 'children': ['101', '111', '119']}; {'id': '101', 'type': 'pair', 'children': ['102', '103']}; {'id': '102', 'type': 'string', 'children': [], 'value': '"site"'}; {'id': '103', 'type': 'subscript', 'children': ['104', '110']}; {'id': '104', 'type': 'call', 'children': ['105', '108']}; {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '107', 'type': 'identifier', 'children': [], 'value': 'site_content'}; {'id': '108', 'type': 'argument_list', 'children': ['109']}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'election_day'}; {'id': '110', 'type': 'string', 'children': [], 'value': '"site"'}; {'id': '111', 'type': 'pair', 'children': ['112', '113']}; {'id': '112', 'type': 'string', 'children': [], 'value': '"page_type"'}; {'id': '113', 'type': 'call', 'children': ['114', '117']}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'serialize_content_blocks'}; {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'page_type_content'}; {'id': '119', 'type': 'pair', 'children': ['120', '121']}; {'id': '120', 'type': 'string', 'children': [], 'value': '"page"'}; {'id': '121', 'type': 'call', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'serialize_content_blocks'}; {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'page_content'}
|
Return serialized content for a division page.
|
def filter_objects_by_section(self, rels, section):
subtree = section.get_descendants(include_self=True)
kwargs_list = [{'%s__in' % rel.field.name: subtree} for rel in rels]
q = Q(**kwargs_list[0])
for kwargs in kwargs_list[1:]:
q |= Q(**kwargs)
return self.get_manager(get_item_model_class()).filter(q).distinct()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'filter_objects_by_section'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'rels'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'section'}; {'id': '7', 'type': 'block', 'children': ['8', '19', '36', '46', '62']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'subtree'}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'section'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'get_descendants'}; {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'include_self'}; {'id': '18', 'type': 'True', 'children': []}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'kwargs_list'}; {'id': '22', 'type': 'list_comprehension', 'children': ['23', '33']}; {'id': '23', 'type': 'dictionary', 'children': ['24']}; {'id': '24', 'type': 'pair', 'children': ['25', '32']}; {'id': '25', 'type': 'binary_operator', 'children': ['26', '27'], 'value': '%'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'%s__in'"}; {'id': '27', 'type': 'attribute', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'rel'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'subtree'}; {'id': '33', 'type': 'for_in_clause', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'rel'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'rels'}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}; {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'Q'}; {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'dictionary_splat', 'children': ['43']}; {'id': '43', 'type': 'subscript', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'kwargs_list'}; {'id': '45', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '46', 'type': 'for_statement', 'children': ['47', '48', '53']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '48', 'type': 'subscript', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'kwargs_list'}; {'id': '50', 'type': 'slice', 'children': ['51', '52']}; {'id': '51', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '52', 'type': 'colon', 'children': []}; {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}; {'id': '55', 'type': 'augmented_assignment', 'children': ['56', '57'], 'value': '|='}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'Q'}; {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'dictionary_splat', 'children': ['61']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '62', 'type': 'return_statement', 'children': ['63']}; {'id': '63', 'type': 'call', 'children': ['64', '79']}; {'id': '64', 'type': 'attribute', 'children': ['65', '78']}; {'id': '65', 'type': 'call', 'children': ['66', '76']}; {'id': '66', 'type': 'attribute', 'children': ['67', '75']}; {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'get_manager'}; {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '74']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'get_item_model_class'}; {'id': '74', 'type': 'argument_list', 'children': []}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'distinct'}; {'id': '79', 'type': 'argument_list', 'children': []}
|
Build a queryset containing all objects in the section subtree.
|
def _checkout(self):
cmd = ["atomic", "mount", "--storage", "ostree", self.ref_image_name, self.mount_point]
self._run_and_log(cmd, self.ostree_path,
"Failed to mount selected image as an ostree repo.")
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_checkout'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '20']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '9', 'type': 'list', 'children': ['10', '11', '12', '13', '14', '17'], 'value': '["atomic", "mount", "--storage", "ostree", self.ref_image_name, self.mount_point]'}; {'id': '10', 'type': 'string', 'children': [], 'value': '"atomic"'}; {'id': '11', 'type': 'string', 'children': [], 'value': '"mount"'}; {'id': '12', 'type': 'string', 'children': [], 'value': '"--storage"'}; {'id': '13', 'type': 'string', 'children': [], 'value': '"ostree"'}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'ref_image_name'}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'mount_point'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_run_and_log'}; {'id': '25', 'type': 'argument_list', 'children': ['26', '27', '30']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ostree_path'}; {'id': '30', 'type': 'string', 'children': [], 'value': '"Failed to mount selected image as an ostree repo."'}
|
check out the image filesystem on self.mount_point
|
def _get_distance_term(self, C, rjb, mag):
c_3 = self._get_anelastic_coeff(C)
rval = np.sqrt(rjb ** 2. + C["h"] ** 2.)
return (C["c1"] + C["c2"] * (mag - self.CONSTS["Mref"])) *\
np.log(rval / self.CONSTS["Rref"]) +\
c_3 * (rval - self.CONSTS["Rref"])
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_distance_term'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'rjb'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'mag'}; {'id': '8', 'type': 'block', 'children': ['9', '18', '35']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'c_3'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': '_get_anelastic_coeff'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'rval'}; {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'sqrt'}; {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'binary_operator', 'children': ['27', '30'], 'value': '+'}; {'id': '27', 'type': 'binary_operator', 'children': ['28', '29'], 'value': '**'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'rjb'}; {'id': '29', 'type': 'float', 'children': [], 'value': '2.'}; {'id': '30', 'type': 'binary_operator', 'children': ['31', '34'], 'value': '**'}; {'id': '31', 'type': 'subscript', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '33', 'type': 'string', 'children': [], 'value': '"h"'}; {'id': '34', 'type': 'float', 'children': [], 'value': '2.'}; {'id': '35', 'type': 'return_statement', 'children': ['36']}; {'id': '36', 'type': 'binary_operator', 'children': ['37', '68', '69'], 'value': '+'}; {'id': '37', 'type': 'binary_operator', 'children': ['38', '55', '56'], 'value': '*'}; {'id': '38', 'type': '()', 'children': ['39']}; {'id': '39', 'type': 'binary_operator', 'children': ['40', '43'], 'value': '+'}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '42', 'type': 'string', 'children': [], 'value': '"c1"'}; {'id': '43', 'type': 'binary_operator', 'children': ['44', '47'], 'value': '*'}; {'id': '44', 'type': 'subscript', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'C'}; {'id': '46', 'type': 'string', 'children': [], 'value': '"c2"'}; {'id': '47', 'type': '()', 'children': ['48']}; {'id': '48', 'type': 'binary_operator', 'children': ['49', '50'], 'value': '-'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'mag'}; {'id': '50', 'type': 'subscript', 'children': ['51', '54']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'CONSTS'}; {'id': '54', 'type': 'string', 'children': [], 'value': '"Mref"'}; {'id': '55', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '56', 'type': 'call', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}; {'id': '61', 'type': 'binary_operator', 'children': ['62', '63'], 'value': '/'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'rval'}; {'id': '63', 'type': 'subscript', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'CONSTS'}; {'id': '67', 'type': 'string', 'children': [], 'value': '"Rref"'}; {'id': '68', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '69', 'type': 'binary_operator', 'children': ['70', '71'], 'value': '*'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'c_3'}; {'id': '71', 'type': '()', 'children': ['72']}; {'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '-'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'rval'}; {'id': '74', 'type': 'subscript', 'children': ['75', '78']}; {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'CONSTS'}; {'id': '78', 'type': 'string', 'children': [], 'value': '"Rref"'}
|
Returns the general distance scaling term - equation 2
|
def parallel_combine_variants(orig_files, out_file, ref_file, config, run_parallel):
file_key = "vcf_files"
def split_by_region(data):
base, ext = utils.splitext_plus(os.path.basename(out_file))
args = []
for region in [x.name for x in ref.file_contigs(ref_file, config)]:
region_out = os.path.join(os.path.dirname(out_file), "%s-regions" % base,
"%s-%s%s" % (base, region, ext))
utils.safe_makedir(os.path.dirname(region_out))
args.append((region_out, ref_file, config, region))
return out_file, args
config = copy.deepcopy(config)
config["file_key"] = file_key
prep_files = run_multicore(p_bgzip_and_index, [[x, config] for x in orig_files], config)
items = [[{file_key: prep_files}]]
parallel_split_combine(items, split_by_region, run_parallel,
"merge_variant_files", "concat_variant_files",
file_key, ["region", "sam_ref", "config"], split_outfile_i=0)
return out_file
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'parallel_combine_variants'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'orig_files'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'out_file'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'ref_file'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'run_parallel'}; {'id': '9', 'type': 'block', 'children': ['10', '14', '113', '122', '128', '143', '152', '169']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'file_key'}; {'id': '13', 'type': 'string', 'children': [], 'value': '"vcf_files"'}; {'id': '14', 'type': 'function_definition', 'children': ['15', '16', '18']}; {'id': '15', 'type': 'function_name', 'children': [], 'value': 'split_by_region'}; {'id': '16', 'type': 'parameters', 'children': ['17']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '18', 'type': 'block', 'children': ['19', '37', '41', '109']}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '24']}; {'id': '21', 'type': 'pattern_list', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'ext'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'splitext_plus'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}; {'id': '29', 'type': 'call', 'children': ['30', '35']}; {'id': '30', 'type': 'attribute', 'children': ['31', '34']}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'out_file'}; {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '40', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '41', 'type': 'for_statement', 'children': ['42', '43', '56']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'region'}; {'id': '43', 'type': 'list_comprehension', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '47', 'type': 'for_in_clause', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'ref'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'file_contigs'}; {'id': '53', 'type': 'argument_list', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ref_file'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '56', 'type': 'block', 'children': ['57', '84', '98']}; {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'region_out'}; {'id': '60', 'type': 'call', 'children': ['61', '66']}; {'id': '61', 'type': 'attribute', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '75', '78']}; {'id': '67', 'type': 'call', 'children': ['68', '73']}; {'id': '68', 'type': 'attribute', 'children': ['69', '72']}; {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'dirname'}; {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'out_file'}; {'id': '75', 'type': 'binary_operator', 'children': ['76', '77'], 'value': '%'}; {'id': '76', 'type': 'string', 'children': [], 'value': '"%s-regions"'}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '78', 'type': 'binary_operator', 'children': ['79', '80'], 'value': '%'}; {'id': '79', 'type': 'string', 'children': [], 'value': '"%s-%s%s"'}; {'id': '80', 'type': 'tuple', 'children': ['81', '82', '83']}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'region'}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'ext'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}; {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'safe_makedir'}; {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '96']}; {'id': '91', 'type': 'attribute', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'dirname'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'region_out'}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}; {'id': '99', 'type': 'call', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'tuple', 'children': ['105', '106', '107', '108']}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 'region_out'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'ref_file'}; {'id': '107', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'region'}; {'id': '109', 'type': 'return_statement', 'children': ['110']}; {'id': '110', 'type': 'expression_list', 'children': ['111', '112']}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'out_file'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '116', 'type': 'call', 'children': ['117', '120']}; {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '119', 'type': 'identifier', 'children': [], 'value': 'deepcopy'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}; {'id': '123', 'type': 'assignment', 'children': ['124', '127']}; {'id': '124', 'type': 'subscript', 'children': ['125', '126']}; {'id': '125', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '126', 'type': 'string', 'children': [], 'value': '"file_key"'}; {'id': '127', 'type': 'identifier', 'children': [], 'value': 'file_key'}; {'id': '128', 'type': 'expression_statement', 'children': ['129']}; {'id': '129', 'type': 'assignment', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'prep_files'}; {'id': '131', 'type': 'call', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'run_multicore'}; {'id': '133', 'type': 'argument_list', 'children': ['134', '135', '142']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'p_bgzip_and_index'}; {'id': '135', 'type': 'list_comprehension', 'children': ['136', '139']}; {'id': '136', 'type': 'list', 'children': ['137', '138'], 'value': '[x, config]'}; {'id': '137', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '139', 'type': 'for_in_clause', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '141', 'type': 'identifier', 'children': [], 'value': 'orig_files'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}; {'id': '145', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '146', 'type': 'list', 'children': ['147'], 'value': '[[{file_key: prep_files}]]'}; {'id': '147', 'type': 'list', 'children': ['148'], 'value': '[{file_key: prep_files}]'}; {'id': '148', 'type': 'dictionary', 'children': ['149']}; {'id': '149', 'type': 'pair', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'file_key'}; {'id': '151', 'type': 'identifier', 'children': [], 'value': 'prep_files'}; {'id': '152', 'type': 'expression_statement', 'children': ['153']}; {'id': '153', 'type': 'call', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'parallel_split_combine'}; {'id': '155', 'type': 'argument_list', 'children': ['156', '157', '158', '159', '160', '161', '162', '166']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '157', 'type': 'identifier', 'children': [], 'value': 'split_by_region'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'run_parallel'}; {'id': '159', 'type': 'string', 'children': [], 'value': '"merge_variant_files"'}; {'id': '160', 'type': 'string', 'children': [], 'value': '"concat_variant_files"'}; {'id': '161', 'type': 'identifier', 'children': [], 'value': 'file_key'}; {'id': '162', 'type': 'list', 'children': ['163', '164', '165'], 'value': '["region", "sam_ref", "config"]'}; {'id': '163', 'type': 'string', 'children': [], 'value': '"region"'}; {'id': '164', 'type': 'string', 'children': [], 'value': '"sam_ref"'}; {'id': '165', 'type': 'string', 'children': [], 'value': '"config"'}; {'id': '166', 'type': 'keyword_argument', 'children': ['167', '168']}; {'id': '167', 'type': 'identifier', 'children': [], 'value': 'split_outfile_i'}; {'id': '168', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '169', 'type': 'return_statement', 'children': ['170']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'out_file'}
|
Combine variants in parallel by chromosome, concatenating final outputs.
|
def graph_response(graph, format):
fmt = guess_format(format)
if not fmt:
abort(404)
headers = {
'Content-Type': RDF_MIME_TYPES[fmt]
}
kwargs = {}
if fmt == 'json-ld':
kwargs['context'] = context
if isinstance(graph, RdfResource):
graph = graph.graph
return graph.serialize(format=fmt, **kwargs), 200, headers
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'graph_response'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '6', 'type': 'block', 'children': ['7', '14', '23', '32', '36', '47', '60']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'fmt'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'guess_format'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '14', 'type': 'if_statement', 'children': ['15', '17']}; {'id': '15', 'type': 'not_operator', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'fmt'}; {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'abort'}; {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'integer', 'children': [], 'value': '404'}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '26', 'type': 'dictionary', 'children': ['27']}; {'id': '27', 'type': 'pair', 'children': ['28', '29']}; {'id': '28', 'type': 'string', 'children': [], 'value': "'Content-Type'"}; {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'RDF_MIME_TYPES'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'fmt'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}; {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '35', 'type': 'dictionary', 'children': []}; {'id': '36', 'type': 'if_statement', 'children': ['37', '40']}; {'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': '=='}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'fmt'}; {'id': '39', 'type': 'string', 'children': [], 'value': "'json-ld'"}; {'id': '40', 'type': 'block', 'children': ['41']}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '46']}; {'id': '43', 'type': 'subscript', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '45', 'type': 'string', 'children': [], 'value': "'context'"}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '47', 'type': 'if_statement', 'children': ['48', '53']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'RdfResource'}; {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}; {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '60', 'type': 'return_statement', 'children': ['61']}; {'id': '61', 'type': 'expression_list', 'children': ['62', '72', '73']}; {'id': '62', 'type': 'call', 'children': ['63', '66']}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'serialize'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '70']}; {'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'fmt'}; {'id': '70', 'type': 'dictionary_splat', 'children': ['71']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '72', 'type': 'integer', 'children': [], 'value': '200'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'headers'}
|
Return a proper flask response for a RDF resource given an expected format.
|
def assertpath(path_, msg='', **kwargs):
if NO_ASSERTS:
return
if path_ is None:
raise AssertionError('path is None! %s' % (path_, msg))
if path_ == '':
raise AssertionError('path=%r is the empty string! %s' % (path_, msg))
if not checkpath(path_, **kwargs):
raise AssertionError('path=%r does not exist! %s' % (path_, msg))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'assertpath'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'path_'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '7', 'type': 'string', 'children': [], 'value': "''"}; {'id': '8', 'type': 'dictionary_splat_pattern', 'children': ['9']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '10', 'type': 'block', 'children': ['11', '15', '29', '43']}; {'id': '11', 'type': 'if_statement', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'NO_ASSERTS'}; {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'return_statement', 'children': []}; {'id': '15', 'type': 'if_statement', 'children': ['16', '19']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'is'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'path_'}; {'id': '18', 'type': 'None', 'children': []}; {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'raise_statement', 'children': ['21']}; {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'AssertionError'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'binary_operator', 'children': ['25', '26'], 'value': '%'}; {'id': '25', 'type': 'string', 'children': [], 'value': "'path is None! %s'"}; {'id': '26', 'type': 'tuple', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'path_'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '29', 'type': 'if_statement', 'children': ['30', '33']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': '=='}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'path_'}; {'id': '32', 'type': 'string', 'children': [], 'value': "''"}; {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'raise_statement', 'children': ['35']}; {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'AssertionError'}; {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'binary_operator', 'children': ['39', '40'], 'value': '%'}; {'id': '39', 'type': 'string', 'children': [], 'value': "'path=%r is the empty string! %s'"}; {'id': '40', 'type': 'tuple', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'path_'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '43', 'type': 'if_statement', 'children': ['44', '51']}; {'id': '44', 'type': 'not_operator', 'children': ['45']}; {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'checkpath'}; {'id': '47', 'type': 'argument_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'path_'}; {'id': '49', 'type': 'dictionary_splat', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'raise_statement', 'children': ['53']}; {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'AssertionError'}; {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'binary_operator', 'children': ['57', '58'], 'value': '%'}; {'id': '57', 'type': 'string', 'children': [], 'value': "'path=%r does not exist! %s'"}; {'id': '58', 'type': 'tuple', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'path_'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'msg'}
|
Asserts that a patha exists
|
def to_dict(self):
return {'schema': self.schema, 'table': self.table, 'name': self.name, 'type': self.type}
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_dict'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}; {'id': '7', 'type': 'dictionary', 'children': ['8', '13', '18', '23']}; {'id': '8', 'type': 'pair', 'children': ['9', '10']}; {'id': '9', 'type': 'string', 'children': [], 'value': "'schema'"}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '13', 'type': 'pair', 'children': ['14', '15']}; {'id': '14', 'type': 'string', 'children': [], 'value': "'table'"}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'table'}; {'id': '18', 'type': 'pair', 'children': ['19', '20']}; {'id': '19', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '23', 'type': 'pair', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': "'type'"}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'type'}
|
Serialize representation of the column for local caching.
|
def apply(self, coordinates):
for i in self.affected_atoms:
coordinates[i] = self.transformation*coordinates[i]
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'apply'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'coordinates'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'for_statement', 'children': ['8', '9', '12']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'affected_atoms'}; {'id': '12', 'type': 'block', 'children': ['13']}; {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '18']}; {'id': '15', 'type': 'subscript', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'coordinates'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '18', 'type': 'binary_operator', 'children': ['19', '22'], 'value': '*'}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'transformation'}; {'id': '22', 'type': 'subscript', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'coordinates'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'i'}
|
Apply this distortion to Cartesian coordinates
|
def hard_reset(self):
if self.seq is not None and self.shuffle:
random.shuffle(self.seq)
if self.imgrec is not None:
self.imgrec.reset()
self.cur = 0
self._allow_read = True
self._cache_data = None
self._cache_label = None
self._cache_idx = None
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'hard_reset'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '26', '41', '47', '53', '59', '65']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '16']}; {'id': '7', 'type': 'boolean_operator', 'children': ['8', '13'], 'value': 'and'}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '12'], 'value': 'is not'}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '12', 'type': 'None', 'children': []}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'shuffle'}; {'id': '16', 'type': 'block', 'children': ['17']}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'shuffle'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '32']}; {'id': '27', 'type': 'comparison_operator', 'children': ['28', '31'], 'value': 'is not'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'imgrec'}; {'id': '31', 'type': 'None', 'children': []}; {'id': '32', 'type': 'block', 'children': ['33']}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '40']}; {'id': '35', 'type': 'attribute', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'imgrec'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'reset'}; {'id': '40', 'type': 'argument_list', 'children': []}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'cur'}; {'id': '46', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': '_allow_read'}; {'id': '52', 'type': 'True', 'children': []}; {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '58']}; {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': '_cache_data'}; {'id': '58', 'type': 'None', 'children': []}; {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '64']}; {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': '_cache_label'}; {'id': '64', 'type': 'None', 'children': []}; {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '70']}; {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': '_cache_idx'}; {'id': '70', 'type': 'None', 'children': []}
|
Resets the iterator and ignore roll over data
|
def GenerateFile(self, input_filename=None, output_filename=None):
if input_filename is None:
input_filename = output_filename + ".in"
if output_filename[-3:] == ".in":
output_filename = output_filename[:-3]
logging.debug("Generating file %s from %s", output_filename, input_filename)
with io.open(input_filename, "r") as fd:
data = fd.read()
with io.open(output_filename, "w") as fd:
fd.write(config.CONFIG.InterpolateValue(data, context=self.context))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'GenerateFile'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'input_filename'}; {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'output_filename'}; {'id': '10', 'type': 'None', 'children': []}; {'id': '11', 'type': 'block', 'children': ['12', '23', '42', '51', '73']}; {'id': '12', 'type': 'if_statement', 'children': ['13', '16']}; {'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': 'is'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'input_filename'}; {'id': '15', 'type': 'None', 'children': []}; {'id': '16', 'type': 'block', 'children': ['17']}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'input_filename'}; {'id': '20', 'type': 'binary_operator', 'children': ['21', '22'], 'value': '+'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'output_filename'}; {'id': '22', 'type': 'string', 'children': [], 'value': '".in"'}; {'id': '23', 'type': 'if_statement', 'children': ['24', '32']}; {'id': '24', 'type': 'comparison_operator', 'children': ['25', '31'], 'value': '=='}; {'id': '25', 'type': 'subscript', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'output_filename'}; {'id': '27', 'type': 'slice', 'children': ['28', '30']}; {'id': '28', 'type': 'unary_operator', 'children': ['29'], 'value': '-'}; {'id': '29', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '30', 'type': 'colon', 'children': []}; {'id': '31', 'type': 'string', 'children': [], 'value': '".in"'}; {'id': '32', 'type': 'block', 'children': ['33']}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'output_filename'}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'output_filename'}; {'id': '38', 'type': 'slice', 'children': ['39', '40']}; {'id': '39', 'type': 'colon', 'children': []}; {'id': '40', 'type': 'unary_operator', 'children': ['41'], 'value': '-'}; {'id': '41', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}; {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '47', 'type': 'argument_list', 'children': ['48', '49', '50']}; {'id': '48', 'type': 'string', 'children': [], 'value': '"Generating file %s from %s"'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'output_filename'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'input_filename'}; {'id': '51', 'type': 'with_statement', 'children': ['52', '64']}; {'id': '52', 'type': 'with_clause', 'children': ['53']}; {'id': '53', 'type': 'with_item', 'children': ['54']}; {'id': '54', 'type': 'as_pattern', 'children': ['55', '62']}; {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'io'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '59', 'type': 'argument_list', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'input_filename'}; {'id': '61', 'type': 'string', 'children': [], 'value': '"r"'}; {'id': '62', 'type': 'as_pattern_target', 'children': ['63']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'fd'}; {'id': '64', 'type': 'block', 'children': ['65']}; {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '68', 'type': 'call', 'children': ['69', '72']}; {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'fd'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '72', 'type': 'argument_list', 'children': []}; {'id': '73', 'type': 'with_statement', 'children': ['74', '86']}; {'id': '74', 'type': 'with_clause', 'children': ['75']}; {'id': '75', 'type': 'with_item', 'children': ['76']}; {'id': '76', 'type': 'as_pattern', 'children': ['77', '84']}; {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'io'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '81', 'type': 'argument_list', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'output_filename'}; {'id': '83', 'type': 'string', 'children': [], 'value': '"w"'}; {'id': '84', 'type': 'as_pattern_target', 'children': ['85']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'fd'}; {'id': '86', 'type': 'block', 'children': ['87']}; {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}; {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'fd'}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}; {'id': '93', 'type': 'call', 'children': ['94', '99']}; {'id': '94', 'type': 'attribute', 'children': ['95', '98']}; {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'CONFIG'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'InterpolateValue'}; {'id': '99', 'type': 'argument_list', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '101', 'type': 'keyword_argument', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 'context'}
|
Generates a file from a template, interpolating config values.
|
def to_task(self):
task_args = self.get_task_args()
name = task_args.get('name', MESSAGE_PROCESSOR_NAME)
if not 'countdown' in task_args:
task_args['countdown'] = self.frequency
task_args['name'] = "%s-%s-%s-%s" % (
name, self.tag, self.current_batch, self.time_throttle)
self.update_options(task_args=task_args)
return super(MessageProcessor, self).to_task()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_task'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '14', '24', '38', '56', '65']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'task_args'}; {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'get_task_args'}; {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'task_args'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '21', 'type': 'argument_list', 'children': ['22', '23']}; {'id': '22', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'MESSAGE_PROCESSOR_NAME'}; {'id': '24', 'type': 'if_statement', 'children': ['25', '29']}; {'id': '25', 'type': 'not_operator', 'children': ['26']}; {'id': '26', 'type': 'comparison_operator', 'children': ['27', '28'], 'value': 'in'}; {'id': '27', 'type': 'string', 'children': [], 'value': "'countdown'"}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'task_args'}; {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'assignment', 'children': ['32', '35']}; {'id': '32', 'type': 'subscript', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'task_args'}; {'id': '34', 'type': 'string', 'children': [], 'value': "'countdown'"}; {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'frequency'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}; {'id': '39', 'type': 'assignment', 'children': ['40', '43']}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'task_args'}; {'id': '42', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '43', 'type': 'binary_operator', 'children': ['44', '45'], 'value': '%'}; {'id': '44', 'type': 'string', 'children': [], 'value': '"%s-%s-%s-%s"'}; {'id': '45', 'type': 'tuple', 'children': ['46', '47', '50', '53']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'current_batch'}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'time_throttle'}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}; {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'update_options'}; {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'task_args'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'task_args'}; {'id': '65', 'type': 'return_statement', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '74']}; {'id': '67', 'type': 'attribute', 'children': ['68', '73']}; {'id': '68', 'type': 'call', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'super'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '72']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'MessageProcessor'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'to_task'}; {'id': '74', 'type': 'argument_list', 'children': []}
|
Return a task object representing this MessageProcessor job.
|
def skull_strip(dset,suffix='_ns',prefix=None,unifize=True):
if prefix==None:
prefix = nl.suffix(dset,suffix)
unifize_dset = nl.suffix(dset,'_u')
cmd = bet2 if bet2 else 'bet2'
if unifize:
info = nl.dset_info(dset)
if info==None:
nl.notify('Error: could not read info for dset %s' % dset,level=nl.level.error)
return False
cmd = os.path.join(fsl_dir,cmd) if fsl_dir else cmd
cutoff_value = nl.max(dset) * 0.05
nl.run(['3dUnifize','-prefix',unifize_dset,nl.calc(dset,'step(a-%f)*a' % cutoff_value)],products=unifize_dset)
else:
unifize_dset = dset
nl.run([cmd,unifize_dset,prefix,'-w',0.5],products=prefix)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'skull_strip'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'dset'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '7', 'type': 'string', 'children': [], 'value': "'_ns'"}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '10', 'type': 'None', 'children': []}; {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'unifize'}; {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '30', '40', '47', '136']}; {'id': '15', 'type': 'if_statement', 'children': ['16', '19']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': '=='}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '18', 'type': 'None', 'children': []}; {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '27', 'type': 'argument_list', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'dset'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'unifize_dset'}; {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '37', 'type': 'argument_list', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'dset'}; {'id': '39', 'type': 'string', 'children': [], 'value': "'_u'"}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}; {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '43', 'type': 'conditional_expression', 'children': ['44', '45', '46'], 'value': 'if'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'bet2'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'bet2'}; {'id': '46', 'type': 'string', 'children': [], 'value': "'bet2'"}; {'id': '47', 'type': 'if_statement', 'children': ['48', '49', '130']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'unifize'}; {'id': '49', 'type': 'block', 'children': ['50', '59', '82', '97', '108']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}; {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'dset_info'}; {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'dset'}; {'id': '59', 'type': 'if_statement', 'children': ['60', '63']}; {'id': '60', 'type': 'comparison_operator', 'children': ['61', '62'], 'value': '=='}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '62', 'type': 'None', 'children': []}; {'id': '63', 'type': 'block', 'children': ['64', '80']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}; {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'notify'}; {'id': '69', 'type': 'argument_list', 'children': ['70', '73']}; {'id': '70', 'type': 'binary_operator', 'children': ['71', '72'], 'value': '%'}; {'id': '71', 'type': 'string', 'children': [], 'value': "'Error: could not read info for dset %s'"}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'dset'}; {'id': '73', 'type': 'keyword_argument', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '75', 'type': 'attribute', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '80', 'type': 'return_statement', 'children': ['81']}; {'id': '81', 'type': 'False', 'children': []}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}; {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '85', 'type': 'conditional_expression', 'children': ['86', '95', '96'], 'value': 'if'}; {'id': '86', 'type': 'call', 'children': ['87', '92']}; {'id': '87', 'type': 'attribute', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '92', 'type': 'argument_list', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'fsl_dir'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'fsl_dir'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'cutoff_value'}; {'id': '100', 'type': 'binary_operator', 'children': ['101', '107'], 'value': '*'}; {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '105', 'type': 'argument_list', 'children': ['106']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'dset'}; {'id': '107', 'type': 'float', 'children': [], 'value': '0.05'}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}; {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '113', 'type': 'argument_list', 'children': ['114', '127']}; {'id': '114', 'type': 'list', 'children': ['115', '116', '117', '118'], 'value': "['3dUnifize','-prefix',unifize_dset,nl.calc(dset,'step(a-%f)*a' % cutoff_value)]"}; {'id': '115', 'type': 'string', 'children': [], 'value': "'3dUnifize'"}; {'id': '116', 'type': 'string', 'children': [], 'value': "'-prefix'"}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'unifize_dset'}; {'id': '118', 'type': 'call', 'children': ['119', '122']}; {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'calc'}; {'id': '122', 'type': 'argument_list', 'children': ['123', '124']}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'dset'}; {'id': '124', 'type': 'binary_operator', 'children': ['125', '126'], 'value': '%'}; {'id': '125', 'type': 'string', 'children': [], 'value': "'step(a-%f)*a'"}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'cutoff_value'}; {'id': '127', 'type': 'keyword_argument', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'products'}; {'id': '129', 'type': 'identifier', 'children': [], 'value': 'unifize_dset'}; {'id': '130', 'type': 'else_clause', 'children': ['131']}; {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}; {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'unifize_dset'}; {'id': '135', 'type': 'identifier', 'children': [], 'value': 'dset'}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}; {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}; {'id': '139', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '141', 'type': 'argument_list', 'children': ['142', '148']}; {'id': '142', 'type': 'list', 'children': ['143', '144', '145', '146', '147'], 'value': "[cmd,unifize_dset,prefix,'-w',0.5]"}; {'id': '143', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'unifize_dset'}; {'id': '145', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '146', 'type': 'string', 'children': [], 'value': "'-w'"}; {'id': '147', 'type': 'float', 'children': [], 'value': '0.5'}; {'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']}; {'id': '149', 'type': 'identifier', 'children': [], 'value': 'products'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'prefix'}
|
use bet to strip skull from given anatomy
|
def generate_table(self, rows):
table = PrettyTable(**self.kwargs)
for row in self.rows:
if len(row[0]) < self.max_row_width:
appends = self.max_row_width - len(row[0])
for i in range(1, appends):
row[0].append("-")
if row[1] is True:
self.make_fields_unique(row[0])
table.field_names = row[0]
else:
table.add_row(row[0])
return table
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'generate_table'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'rows'}; {'id': '6', 'type': 'block', 'children': ['7', '17', '100']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'table'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'PrettyTable'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'dictionary_splat', 'children': ['14']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '17', 'type': 'for_statement', 'children': ['18', '19', '22']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'rows'}; {'id': '22', 'type': 'block', 'children': ['23', '65']}; {'id': '23', 'type': 'if_statement', 'children': ['24', '34']}; {'id': '24', 'type': 'comparison_operator', 'children': ['25', '31'], 'value': '<'}; {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'subscript', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '30', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'max_row_width'}; {'id': '34', 'type': 'block', 'children': ['35', '48']}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'appends'}; {'id': '38', 'type': 'binary_operator', 'children': ['39', '42'], 'value': '-'}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'max_row_width'}; {'id': '42', 'type': 'call', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}; {'id': '45', 'type': 'subscript', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '47', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '48', 'type': 'for_statement', 'children': ['49', '50', '55']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '50', 'type': 'call', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '52', 'type': 'argument_list', 'children': ['53', '54']}; {'id': '53', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'appends'}; {'id': '55', 'type': 'block', 'children': ['56']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}; {'id': '57', 'type': 'call', 'children': ['58', '63']}; {'id': '58', 'type': 'attribute', 'children': ['59', '62']}; {'id': '59', 'type': 'subscript', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '61', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'string', 'children': [], 'value': '"-"'}; {'id': '65', 'type': 'if_statement', 'children': ['66', '71', '89']}; {'id': '66', 'type': 'comparison_operator', 'children': ['67', '70'], 'value': 'is'}; {'id': '67', 'type': 'subscript', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '69', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '70', 'type': 'True', 'children': []}; {'id': '71', 'type': 'block', 'children': ['72', '81']}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}; {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'make_fields_unique'}; {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'subscript', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '80', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '86']}; {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'table'}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'field_names'}; {'id': '86', 'type': 'subscript', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '89', 'type': 'else_clause', 'children': ['90']}; {'id': '90', 'type': 'block', 'children': ['91']}; {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '96']}; {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'table'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'add_row'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}; {'id': '97', 'type': 'subscript', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '99', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '100', 'type': 'return_statement', 'children': ['101']}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'table'}
|
Generates from a list of rows a PrettyTable object.
|
def view(self):
print("")
description, count = "", 0
if self.repo == "sbo":
description = SBoGrep(self.name).description()
else:
PACKAGES_TXT = Utils().read_file(self.lib)
for line in PACKAGES_TXT.splitlines():
if line.startswith(self.name + ":"):
description += line[len(self.name) + 2:] + "\n"
count += 1
if count == 11:
break
if description:
print("{0}{1}{2}".format(self.COLOR, description,
self.meta.color["ENDC"]))
else:
self.msg.pkg_not_found("", self.name, "No matching", "\n")
raise SystemExit(1)
if description and self.repo == "sbo":
print("")
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'view'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '11', '19', '101', '145']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '9', 'type': 'argument_list', 'children': ['10']}; {'id': '10', 'type': 'string', 'children': [], 'value': '""'}; {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '16']}; {'id': '13', 'type': 'pattern_list', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'description'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '16', 'type': 'expression_list', 'children': ['17', '18']}; {'id': '17', 'type': 'string', 'children': [], 'value': '""'}; {'id': '18', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '19', 'type': 'if_statement', 'children': ['20', '25', '39']}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '24'], 'value': '=='}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'repo'}; {'id': '24', 'type': 'string', 'children': [], 'value': '"sbo"'}; {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'description'}; {'id': '29', 'type': 'call', 'children': ['30', '38']}; {'id': '30', 'type': 'attribute', 'children': ['31', '37']}; {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'SBoGrep'}; {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'description'}; {'id': '38', 'type': 'argument_list', 'children': []}; {'id': '39', 'type': 'else_clause', 'children': ['40']}; {'id': '40', 'type': 'block', 'children': ['41', '54']}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'PACKAGES_TXT'}; {'id': '44', 'type': 'call', 'children': ['45', '50']}; {'id': '45', 'type': 'attribute', 'children': ['46', '49']}; {'id': '46', 'type': 'call', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'Utils'}; {'id': '48', 'type': 'argument_list', 'children': []}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'read_file'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'lib'}; {'id': '54', 'type': 'for_statement', 'children': ['55', '56', '61']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '56', 'type': 'call', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'PACKAGES_TXT'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'splitlines'}; {'id': '60', 'type': 'argument_list', 'children': []}; {'id': '61', 'type': 'block', 'children': ['62']}; {'id': '62', 'type': 'if_statement', 'children': ['63', '73']}; {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'binary_operator', 'children': ['69', '72'], 'value': '+'}; {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '72', 'type': 'string', 'children': [], 'value': '":"'}; {'id': '73', 'type': 'block', 'children': ['74', '91', '95']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}; {'id': '75', 'type': 'augmented_assignment', 'children': ['76', '77'], 'value': '+='}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'description'}; {'id': '77', 'type': 'binary_operator', 'children': ['78', '90'], 'value': '+'}; {'id': '78', 'type': 'subscript', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '80', 'type': 'slice', 'children': ['81', '89']}; {'id': '81', 'type': 'binary_operator', 'children': ['82', '88'], 'value': '+'}; {'id': '82', 'type': 'call', 'children': ['83', '84']}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}; {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '89', 'type': 'colon', 'children': []}; {'id': '90', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'augmented_assignment', 'children': ['93', '94'], 'value': '+='}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '94', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '95', 'type': 'if_statement', 'children': ['96', '99']}; {'id': '96', 'type': 'comparison_operator', 'children': ['97', '98'], 'value': '=='}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '98', 'type': 'integer', 'children': [], 'value': '11'}; {'id': '99', 'type': 'block', 'children': ['100']}; {'id': '100', 'type': 'break_statement', 'children': []}; {'id': '101', 'type': 'if_statement', 'children': ['102', '103', '124']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'description'}; {'id': '103', 'type': 'block', 'children': ['104']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}; {'id': '105', 'type': 'call', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'call', 'children': ['109', '112']}; {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'string', 'children': [], 'value': '"{0}{1}{2}"'}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '112', 'type': 'argument_list', 'children': ['113', '116', '117']}; {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'COLOR'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'description'}; {'id': '117', 'type': 'subscript', 'children': ['118', '123']}; {'id': '118', 'type': 'attribute', 'children': ['119', '122']}; {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'meta'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '123', 'type': 'string', 'children': [], 'value': '"ENDC"'}; {'id': '124', 'type': 'else_clause', 'children': ['125']}; {'id': '125', 'type': 'block', 'children': ['126', '140']}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}; {'id': '127', 'type': 'call', 'children': ['128', '133']}; {'id': '128', 'type': 'attribute', 'children': ['129', '132']}; {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '131', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'pkg_not_found'}; {'id': '133', 'type': 'argument_list', 'children': ['134', '135', '138', '139']}; {'id': '134', 'type': 'string', 'children': [], 'value': '""'}; {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '137', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '138', 'type': 'string', 'children': [], 'value': '"No matching"'}; {'id': '139', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '140', 'type': 'raise_statement', 'children': ['141']}; {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'SystemExit'}; {'id': '143', 'type': 'argument_list', 'children': ['144']}; {'id': '144', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '145', 'type': 'if_statement', 'children': ['146', '153']}; {'id': '146', 'type': 'boolean_operator', 'children': ['147', '148'], 'value': 'and'}; {'id': '147', 'type': 'identifier', 'children': [], 'value': 'description'}; {'id': '148', 'type': 'comparison_operator', 'children': ['149', '152'], 'value': '=='}; {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '151', 'type': 'identifier', 'children': [], 'value': 'repo'}; {'id': '152', 'type': 'string', 'children': [], 'value': '"sbo"'}; {'id': '153', 'type': 'block', 'children': ['154']}; {'id': '154', 'type': 'expression_statement', 'children': ['155']}; {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'string', 'children': [], 'value': '""'}
|
Print package description by repository
|
def hash(self):
if not hasattr(self, '_hash'):
self._hash = conf.lib.clang_hashCursor(self)
return self._hash
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'hash'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '27']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '13']}; {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '10', 'type': 'argument_list', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'string', 'children': [], 'value': "'_hash'"}; {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'assignment', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_hash'}; {'id': '19', 'type': 'call', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'conf'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'lib'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'clang_hashCursor'}; {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '27', 'type': 'return_statement', 'children': ['28']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_hash'}
|
Returns a hash of the cursor as an int.
|
def get(self, key):
return self._object_class(json.loads(self._db[key]))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'return_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': '_object_class'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'loads'}; {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'subscript', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': '_db'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'key'}
|
Get data associated with provided key.
|
def dumps(self):
return [self.__class__.__name__.lower(), [x.dumps() for x in self.ts]]
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'dumps'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}; {'id': '7', 'type': 'list', 'children': ['8', '17'], 'value': '[self.__class__.__name__.lower(), [x.dumps() for x in self.ts]]'}; {'id': '8', 'type': 'call', 'children': ['9', '16']}; {'id': '9', 'type': 'attribute', 'children': ['10', '15']}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': '__class__'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '16', 'type': 'argument_list', 'children': []}; {'id': '17', 'type': 'list_comprehension', 'children': ['18', '23']}; {'id': '18', 'type': 'call', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'dumps'}; {'id': '22', 'type': 'argument_list', 'children': []}; {'id': '23', 'type': 'for_in_clause', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'ts'}
|
Override the default to avoid duplicate dump.
|
def calculate_hash_of_dir(directory, file_list=None):
md5_hash = md5()
if not os.path.exists(directory):
return -1
try:
for subdir, dirs, files in os.walk(directory):
for _file in files:
file_path = os.path.join(subdir, _file)
if file_list is not None and file_path not in file_list:
continue
try:
_file_object = open(file_path, 'rb')
except Exception:
_file_object.close()
return -1
while 1:
buf = _file_object.read(4096)
if not buf:
break
md5_hash.update(md5(buf).hexdigest().encode())
_file_object.close()
except Exception:
return -1
return md5_hash.hexdigest()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'calculate_hash_of_dir'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'file_list'}; {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '15', '29', '138']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'md5_hash'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'md5'}; {'id': '14', 'type': 'argument_list', 'children': []}; {'id': '15', 'type': 'if_statement', 'children': ['16', '25']}; {'id': '16', 'type': 'not_operator', 'children': ['17']}; {'id': '17', 'type': 'call', 'children': ['18', '23']}; {'id': '18', 'type': 'attribute', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'return_statement', 'children': ['27']}; {'id': '27', 'type': 'unary_operator', 'children': ['28'], 'value': '-'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '29', 'type': 'try_statement', 'children': ['30', '132']}; {'id': '30', 'type': 'block', 'children': ['31']}; {'id': '31', 'type': 'for_statement', 'children': ['32', '36', '42']}; {'id': '32', 'type': 'pattern_list', 'children': ['33', '34', '35']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'subdir'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'dirs'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'walk'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'for_statement', 'children': ['44', '45', '46']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '_file'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '46', 'type': 'block', 'children': ['47', '59', '69', '91', '126']}; {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'file_path'}; {'id': '50', 'type': 'call', 'children': ['51', '56']}; {'id': '51', 'type': 'attribute', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'subdir'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': '_file'}; {'id': '59', 'type': 'if_statement', 'children': ['60', '67']}; {'id': '60', 'type': 'boolean_operator', 'children': ['61', '64'], 'value': 'and'}; {'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': 'is not'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'file_list'}; {'id': '63', 'type': 'None', 'children': []}; {'id': '64', 'type': 'comparison_operator', 'children': ['65', '66'], 'value': 'not in'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'file_path'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'file_list'}; {'id': '67', 'type': 'block', 'children': ['68']}; {'id': '68', 'type': 'continue_statement', 'children': []}; {'id': '69', 'type': 'try_statement', 'children': ['70', '79']}; {'id': '70', 'type': 'block', 'children': ['71']}; {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': '_file_object'}; {'id': '74', 'type': 'call', 'children': ['75', '76']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '76', 'type': 'argument_list', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'file_path'}; {'id': '78', 'type': 'string', 'children': [], 'value': "'rb'"}; {'id': '79', 'type': 'except_clause', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '81', 'type': 'block', 'children': ['82', '88']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}; {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': '_file_object'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '87', 'type': 'argument_list', 'children': []}; {'id': '88', 'type': 'return_statement', 'children': ['89']}; {'id': '89', 'type': 'unary_operator', 'children': ['90'], 'value': '-'}; {'id': '90', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '91', 'type': 'while_statement', 'children': ['92', '93']}; {'id': '92', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '93', 'type': 'block', 'children': ['94', '103', '108']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}; {'id': '95', 'type': 'assignment', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'buf'}; {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': '_file_object'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'integer', 'children': [], 'value': '4096'}; {'id': '103', 'type': 'if_statement', 'children': ['104', '106']}; {'id': '104', 'type': 'not_operator', 'children': ['105']}; {'id': '105', 'type': 'identifier', 'children': [], 'value': 'buf'}; {'id': '106', 'type': 'block', 'children': ['107']}; {'id': '107', 'type': 'break_statement', 'children': []}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}; {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}; {'id': '111', 'type': 'identifier', 'children': [], 'value': 'md5_hash'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'call', 'children': ['115', '125']}; {'id': '115', 'type': 'attribute', 'children': ['116', '124']}; {'id': '116', 'type': 'call', 'children': ['117', '123']}; {'id': '117', 'type': 'attribute', 'children': ['118', '122']}; {'id': '118', 'type': 'call', 'children': ['119', '120']}; {'id': '119', 'type': 'identifier', 'children': [], 'value': 'md5'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}; {'id': '121', 'type': 'identifier', 'children': [], 'value': 'buf'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'hexdigest'}; {'id': '123', 'type': 'argument_list', 'children': []}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'encode'}; {'id': '125', 'type': 'argument_list', 'children': []}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}; {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}; {'id': '129', 'type': 'identifier', 'children': [], 'value': '_file_object'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '131', 'type': 'argument_list', 'children': []}; {'id': '132', 'type': 'except_clause', 'children': ['133', '134']}; {'id': '133', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '134', 'type': 'block', 'children': ['135']}; {'id': '135', 'type': 'return_statement', 'children': ['136']}; {'id': '136', 'type': 'unary_operator', 'children': ['137'], 'value': '-'}; {'id': '137', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '138', 'type': 'return_statement', 'children': ['139']}; {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}; {'id': '141', 'type': 'identifier', 'children': [], 'value': 'md5_hash'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'hexdigest'}; {'id': '143', 'type': 'argument_list', 'children': []}
|
Calculate hash of directory.
|
def first_seen(self, first_seen):
self._group_data['firstSeen'] = self._utils.format_datetime(
first_seen, date_format='%Y-%m-%dT%H:%M:%SZ'
)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'first_seen'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'first_seen'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '14']}; {'id': '9', 'type': 'subscript', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': '_group_data'}; {'id': '13', 'type': 'string', 'children': [], 'value': "'firstSeen'"}; {'id': '14', 'type': 'call', 'children': ['15', '20']}; {'id': '15', 'type': 'attribute', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_utils'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'format_datetime'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'first_seen'}; {'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'date_format'}; {'id': '24', 'type': 'string', 'children': [], 'value': "'%Y-%m-%dT%H:%M:%SZ'"}
|
Set Document first seen.
|
def cublasCtpsv(handle, uplo, trans, diag, n, AP, x, incx):
status = _libcublas.cublasCtpsv_v2(handle,
_CUBLAS_FILL_MODE[uplo],
_CUBLAS_OP[trans],
_CUBLAS_DIAG[diag],
n, int(AP), int(x), incx)
cublasCheckStatus(status)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cublasCtpsv'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'handle'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'uplo'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'trans'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'diag'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'AP'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'incx'}; {'id': '12', 'type': 'block', 'children': ['13', '41']}; {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '16', 'type': 'call', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_libcublas'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'cublasCtpsv_v2'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22', '25', '28', '31', '32', '36', '40']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'handle'}; {'id': '22', 'type': 'subscript', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': '_CUBLAS_FILL_MODE'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'uplo'}; {'id': '25', 'type': 'subscript', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': '_CUBLAS_OP'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'trans'}; {'id': '28', 'type': 'subscript', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': '_CUBLAS_DIAG'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'diag'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '32', 'type': 'call', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'AP'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'incx'}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'cublasCheckStatus'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'status'}
|
Solve complex triangular-packed system with one right-hand side.
|
def open_python(self, message, namespace):
from code import InteractiveConsole
import readline
import rlcompleter
readline.set_completer(rlcompleter.Completer(namespace).complete)
readline.parse_and_bind('tab: complete')
console = InteractiveConsole(namespace)
console.interact(message)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'open_python'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '7', 'type': 'block', 'children': ['8', '13', '16', '19', '33', '40', '47']}; {'id': '8', 'type': 'import_from_statement', 'children': ['9', '11']}; {'id': '9', 'type': 'dotted_name', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '11', 'type': 'dotted_name', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'InteractiveConsole'}; {'id': '13', 'type': 'import_statement', 'children': ['14']}; {'id': '14', 'type': 'dotted_name', 'children': ['15']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'readline'}; {'id': '16', 'type': 'import_statement', 'children': ['17']}; {'id': '17', 'type': 'dotted_name', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'rlcompleter'}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'call', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'readline'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'set_completer'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'attribute', 'children': ['26', '32']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'rlcompleter'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'Completer'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'complete'}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}; {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'readline'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'parse_and_bind'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}; {'id': '39', 'type': 'string', 'children': [], 'value': "'tab: complete'"}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}; {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'console'}; {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'InteractiveConsole'}; {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'console'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'interact'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'message'}
|
Open interactive python console
|
def example(fn):
@functools.wraps(fn)
def wrapped():
try:
sys.stdout.write('Running: %s\n' % fn.__name__)
fn()
sys.stdout.write('\n')
except KeyboardInterrupt:
sys.stdout.write('\nSkipping example.\n\n')
time.sleep(0.2)
examples.append(wrapped)
return wrapped
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'example'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '5', 'type': 'block', 'children': ['6', '65', '72']}; {'id': '6', 'type': 'decorated_definition', 'children': ['7', '14']}; {'id': '7', 'type': 'decorator', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'functools'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'wraps'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '14', 'type': 'function_definition', 'children': ['15', '16', '17']}; {'id': '15', 'type': 'function_name', 'children': [], 'value': 'wrapped'}; {'id': '16', 'type': 'parameters', 'children': []}; {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'try_statement', 'children': ['19', '46']}; {'id': '19', 'type': 'block', 'children': ['20', '33', '37']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'call', 'children': ['22', '27']}; {'id': '22', 'type': 'attribute', 'children': ['23', '26']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'binary_operator', 'children': ['29', '30'], 'value': '%'}; {'id': '29', 'type': 'string', 'children': [], 'value': "'Running: %s\\n'"}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '36', 'type': 'argument_list', 'children': []}; {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '44']}; {'id': '39', 'type': 'attribute', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}; {'id': '45', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '46', 'type': 'except_clause', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'KeyboardInterrupt'}; {'id': '48', 'type': 'block', 'children': ['49', '58']}; {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '56']}; {'id': '51', 'type': 'attribute', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}; {'id': '57', 'type': 'string', 'children': [], 'value': "'\\nSkipping example.\\n\\n'"}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}; {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'sleep'}; {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'float', 'children': [], 'value': '0.2'}; {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '70']}; {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'examples'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'wrapped'}; {'id': '72', 'type': 'return_statement', 'children': ['73']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'wrapped'}
|
Wrap the examples so they generate readable output
|
def unit_conversion(thing, units, length=False):
if 'n/a' == thing:
return 'n/a'
try:
thing = round(thing * CONVERSION[units][0 + length], 2)
except TypeError:
thing = 'fubar'
return thing, CONVERSION[units][2 + length]
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'unit_conversion'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'thing'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'units'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'length'}; {'id': '8', 'type': 'False', 'children': []}; {'id': '9', 'type': 'block', 'children': ['10', '17', '42']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '14']}; {'id': '11', 'type': 'comparison_operator', 'children': ['12', '13'], 'value': '=='}; {'id': '12', 'type': 'string', 'children': [], 'value': "'n/a'"}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'thing'}; {'id': '14', 'type': 'block', 'children': ['15']}; {'id': '15', 'type': 'return_statement', 'children': ['16']}; {'id': '16', 'type': 'string', 'children': [], 'value': "'n/a'"}; {'id': '17', 'type': 'try_statement', 'children': ['18', '35']}; {'id': '18', 'type': 'block', 'children': ['19']}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'thing'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'round'}; {'id': '24', 'type': 'argument_list', 'children': ['25', '34']}; {'id': '25', 'type': 'binary_operator', 'children': ['26', '27'], 'value': '*'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'thing'}; {'id': '27', 'type': 'subscript', 'children': ['28', '31']}; {'id': '28', 'type': 'subscript', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'CONVERSION'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'units'}; {'id': '31', 'type': 'binary_operator', 'children': ['32', '33'], 'value': '+'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'length'}; {'id': '34', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '35', 'type': 'except_clause', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}; {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'thing'}; {'id': '41', 'type': 'string', 'children': [], 'value': "'fubar'"}; {'id': '42', 'type': 'return_statement', 'children': ['43']}; {'id': '43', 'type': 'expression_list', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'thing'}; {'id': '45', 'type': 'subscript', 'children': ['46', '49']}; {'id': '46', 'type': 'subscript', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'CONVERSION'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'units'}; {'id': '49', 'type': 'binary_operator', 'children': ['50', '51'], 'value': '+'}; {'id': '50', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'length'}
|
converts base data between metric, imperial, or nautical units
|
def run_tensorboard(run_id, tflog_id):
data = current_app.config["data"]
run = data.get_run_dao().get(run_id)
base_dir = Path(run["experiment"]["base_dir"])
log_dir = Path(run["info"]["tensorflow"]["logdirs"][tflog_id])
if log_dir.is_absolute():
path_to_log_dir = log_dir
else:
path_to_log_dir = base_dir.joinpath(log_dir)
port = int(tensorboard.run_tensorboard(str(path_to_log_dir)))
url_root = request.url_root
url_parts = re.search("://([^:/]+)", url_root)
redirect_to_address = url_parts.group(1)
return redirect("http://%s:%d" % (redirect_to_address, port))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'run_tensorboard'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'run_id'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'tflog_id'}; {'id': '6', 'type': 'block', 'children': ['7', '15', '28', '39', '54', '76', '91', '97', '107', '116']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '10', 'type': 'subscript', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'current_app'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '14', 'type': 'string', 'children': [], 'value': '"data"'}; {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '18', 'type': 'call', 'children': ['19', '26']}; {'id': '19', 'type': 'attribute', 'children': ['20', '25']}; {'id': '20', 'type': 'call', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'get_run_dao'}; {'id': '24', 'type': 'argument_list', 'children': []}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'run_id'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}; {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'base_dir'}; {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'Path'}; {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'subscript', 'children': ['35', '38']}; {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '37', 'type': 'string', 'children': [], 'value': '"experiment"'}; {'id': '38', 'type': 'string', 'children': [], 'value': '"base_dir"'}; {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'log_dir'}; {'id': '42', 'type': 'call', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'Path'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}; {'id': '45', 'type': 'subscript', 'children': ['46', '53']}; {'id': '46', 'type': 'subscript', 'children': ['47', '52']}; {'id': '47', 'type': 'subscript', 'children': ['48', '51']}; {'id': '48', 'type': 'subscript', 'children': ['49', '50']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '50', 'type': 'string', 'children': [], 'value': '"info"'}; {'id': '51', 'type': 'string', 'children': [], 'value': '"tensorflow"'}; {'id': '52', 'type': 'string', 'children': [], 'value': '"logdirs"'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'tflog_id'}; {'id': '54', 'type': 'if_statement', 'children': ['55', '60', '65']}; {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'log_dir'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'is_absolute'}; {'id': '59', 'type': 'argument_list', 'children': []}; {'id': '60', 'type': 'block', 'children': ['61']}; {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'path_to_log_dir'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'log_dir'}; {'id': '65', 'type': 'else_clause', 'children': ['66']}; {'id': '66', 'type': 'block', 'children': ['67']}; {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'path_to_log_dir'}; {'id': '70', 'type': 'call', 'children': ['71', '74']}; {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'base_dir'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'joinpath'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'log_dir'}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}; {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'port'}; {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '86']}; {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'tensorboard'}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'run_tensorboard'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}; {'id': '87', 'type': 'call', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'path_to_log_dir'}; {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'url_root'}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'url_root'}; {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'url_parts'}; {'id': '100', 'type': 'call', 'children': ['101', '104']}; {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'search'}; {'id': '104', 'type': 'argument_list', 'children': ['105', '106']}; {'id': '105', 'type': 'string', 'children': [], 'value': '"://([^:/]+)"'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'url_root'}; {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '110']}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'redirect_to_address'}; {'id': '110', 'type': 'call', 'children': ['111', '114']}; {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'url_parts'}; {'id': '113', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}; {'id': '115', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '116', 'type': 'return_statement', 'children': ['117']}; {'id': '117', 'type': 'call', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'redirect'}; {'id': '119', 'type': 'argument_list', 'children': ['120']}; {'id': '120', 'type': 'binary_operator', 'children': ['121', '122'], 'value': '%'}; {'id': '121', 'type': 'string', 'children': [], 'value': '"http://%s:%d"'}; {'id': '122', 'type': 'tuple', 'children': ['123', '124']}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'redirect_to_address'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'port'}
|
Launch TensorBoard for a given run ID and log ID of that run.
|
def _create_placeholders(self):
self.input_data = tf.placeholder(
tf.int32, [self.batch_size, self.num_steps])
self.input_labels = tf.placeholder(
tf.int32, [self.batch_size, self.num_steps])
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_create_placeholders'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '26']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'input_data'}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'tf'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'placeholder'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'tf'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'int32'}; {'id': '19', 'type': 'list', 'children': ['20', '23'], 'value': '[self.batch_size, self.num_steps]'}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'batch_size'}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'num_steps'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'assignment', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'input_labels'}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'tf'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'placeholder'}; {'id': '35', 'type': 'argument_list', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'tf'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'int32'}; {'id': '39', 'type': 'list', 'children': ['40', '43'], 'value': '[self.batch_size, self.num_steps]'}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'batch_size'}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'num_steps'}
|
Create the computational graph's placeholders.
|
def cfitsio_version(asfloat=False):
ver = '%0.3f' % _fitsio_wrap.cfitsio_version()
if asfloat:
return float(ver)
else:
return ver
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cfitsio_version'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'asfloat'}; {'id': '6', 'type': 'False', 'children': []}; {'id': '7', 'type': 'block', 'children': ['8', '18']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'ver'}; {'id': '11', 'type': 'binary_operator', 'children': ['12', '13'], 'value': '%'}; {'id': '12', 'type': 'string', 'children': [], 'value': "'%0.3f'"}; {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': '_fitsio_wrap'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'cfitsio_version'}; {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'if_statement', 'children': ['19', '20', '26']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'asfloat'}; {'id': '20', 'type': 'block', 'children': ['21']}; {'id': '21', 'type': 'return_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ver'}; {'id': '26', 'type': 'else_clause', 'children': ['27']}; {'id': '27', 'type': 'block', 'children': ['28']}; {'id': '28', 'type': 'return_statement', 'children': ['29']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ver'}
|
Return the cfitsio version as a string.
|
def findrec(s, data):
datablock = []
for rec in data:
if s == rec[0]:
datablock.append([rec[1], rec[2], rec[3], rec[4]])
return datablock
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'findrec'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '41']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'datablock'}; {'id': '10', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '11', 'type': 'for_statement', 'children': ['12', '13', '14']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '14', 'type': 'block', 'children': ['15']}; {'id': '15', 'type': 'if_statement', 'children': ['16', '21']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': '=='}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '18', 'type': 'subscript', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '20', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'datablock'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'list', 'children': ['29', '32', '35', '38'], 'value': '[rec[1], rec[2], rec[3], rec[4]]'}; {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '31', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '32', 'type': 'subscript', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '34', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '37', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '38', 'type': 'subscript', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '40', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'datablock'}
|
finds all the records belonging to s in data
|
def remove(id_):
with LOCK:
thread = REGISTRY.pop(id_, None)
if thread is not None:
thread.cancel()
return thread
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'id_'}; {'id': '5', 'type': 'block', 'children': ['6', '32']}; {'id': '6', 'type': 'with_statement', 'children': ['7', '10']}; {'id': '7', 'type': 'with_clause', 'children': ['8']}; {'id': '8', 'type': 'with_item', 'children': ['9']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'LOCK'}; {'id': '10', 'type': 'block', 'children': ['11', '21']}; {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'thread'}; {'id': '14', 'type': 'call', 'children': ['15', '18']}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'REGISTRY'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '18', 'type': 'argument_list', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'id_'}; {'id': '20', 'type': 'None', 'children': []}; {'id': '21', 'type': 'if_statement', 'children': ['22', '25']}; {'id': '22', 'type': 'comparison_operator', 'children': ['23', '24'], 'value': 'is not'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'thread'}; {'id': '24', 'type': 'None', 'children': []}; {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'thread'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'cancel'}; {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'return_statement', 'children': ['33']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'thread'}
|
Remove the callback and its schedule
|
def right(ctx, text, num_chars):
num_chars = conversions.to_integer(num_chars, ctx)
if num_chars < 0:
raise ValueError("Number of chars can't be negative")
elif num_chars == 0:
return ''
else:
return conversions.to_string(text, ctx)[-num_chars:]
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'right'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'num_chars'}; {'id': '7', 'type': 'block', 'children': ['8', '18']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'num_chars'}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'conversions'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'to_integer'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'num_chars'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '18', 'type': 'if_statement', 'children': ['19', '22', '28', '35']}; {'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': '<'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'num_chars'}; {'id': '21', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '22', 'type': 'block', 'children': ['23']}; {'id': '23', 'type': 'raise_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}; {'id': '27', 'type': 'string', 'children': [], 'value': '"Number of chars can\'t be negative"'}; {'id': '28', 'type': 'elif_clause', 'children': ['29', '32']}; {'id': '29', 'type': 'comparison_operator', 'children': ['30', '31'], 'value': '=='}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'num_chars'}; {'id': '31', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '32', 'type': 'block', 'children': ['33']}; {'id': '33', 'type': 'return_statement', 'children': ['34']}; {'id': '34', 'type': 'string', 'children': [], 'value': "''"}; {'id': '35', 'type': 'else_clause', 'children': ['36']}; {'id': '36', 'type': 'block', 'children': ['37']}; {'id': '37', 'type': 'return_statement', 'children': ['38']}; {'id': '38', 'type': 'subscript', 'children': ['39', '46']}; {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'conversions'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'to_string'}; {'id': '43', 'type': 'argument_list', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '46', 'type': 'slice', 'children': ['47', '49']}; {'id': '47', 'type': 'unary_operator', 'children': ['48'], 'value': '-'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'num_chars'}; {'id': '49', 'type': 'colon', 'children': []}
|
Returns the last characters in a text string
|
def fetcher_loop_v1(data_queue, data_buffer, pin_memory=False,
pin_device_id=0, data_buffer_lock=None):
while True:
idx, batch = data_queue.get()
if idx is None:
break
if pin_memory:
batch = _as_in_context(batch, context.cpu_pinned(pin_device_id))
else:
batch = _as_in_context(batch, context.cpu())
if data_buffer_lock is not None:
with data_buffer_lock:
data_buffer[idx] = batch
else:
data_buffer[idx] = batch
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fetcher_loop_v1'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'data_queue'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'data_buffer'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'pin_memory'}; {'id': '8', 'type': 'False', 'children': []}; {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'pin_device_id'}; {'id': '11', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'data_buffer_lock'}; {'id': '14', 'type': 'None', 'children': []}; {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'while_statement', 'children': ['17', '18']}; {'id': '17', 'type': 'True', 'children': []}; {'id': '18', 'type': 'block', 'children': ['19', '29', '35', '65']}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '24']}; {'id': '21', 'type': 'pattern_list', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'batch'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'data_queue'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '28', 'type': 'argument_list', 'children': []}; {'id': '29', 'type': 'if_statement', 'children': ['30', '33']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': 'is'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '32', 'type': 'None', 'children': []}; {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'break_statement', 'children': []}; {'id': '35', 'type': 'if_statement', 'children': ['36', '37', '51']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'pin_memory'}; {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}; {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'batch'}; {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': '_as_in_context'}; {'id': '43', 'type': 'argument_list', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'batch'}; {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'cpu_pinned'}; {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'pin_device_id'}; {'id': '51', 'type': 'else_clause', 'children': ['52']}; {'id': '52', 'type': 'block', 'children': ['53']}; {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'batch'}; {'id': '56', 'type': 'call', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': '_as_in_context'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'batch'}; {'id': '60', 'type': 'call', 'children': ['61', '64']}; {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'cpu'}; {'id': '64', 'type': 'argument_list', 'children': []}; {'id': '65', 'type': 'if_statement', 'children': ['66', '69', '81']}; {'id': '66', 'type': 'comparison_operator', 'children': ['67', '68'], 'value': 'is not'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'data_buffer_lock'}; {'id': '68', 'type': 'None', 'children': []}; {'id': '69', 'type': 'block', 'children': ['70']}; {'id': '70', 'type': 'with_statement', 'children': ['71', '74']}; {'id': '71', 'type': 'with_clause', 'children': ['72']}; {'id': '72', 'type': 'with_item', 'children': ['73']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'data_buffer_lock'}; {'id': '74', 'type': 'block', 'children': ['75']}; {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'assignment', 'children': ['77', '80']}; {'id': '77', 'type': 'subscript', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'data_buffer'}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'batch'}; {'id': '81', 'type': 'else_clause', 'children': ['82']}; {'id': '82', 'type': 'block', 'children': ['83']}; {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '88']}; {'id': '85', 'type': 'subscript', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'data_buffer'}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'batch'}
|
Fetcher loop for fetching data from queue and put in reorder dict.
|
def transform_aglistener_output(result):
from collections import OrderedDict
from msrestazure.tools import parse_resource_id
try:
resource_group = getattr(result, 'resource_group', None) or parse_resource_id(result.id)['resource_group']
output = OrderedDict([('id', result.id),
('name', result.name),
('provisioningState', result.provisioning_state),
('port', result.port),
('resourceGroup', resource_group)])
if result.load_balancer_configurations is not None:
output['loadBalancerConfigurations'] = format_load_balancer_configuration_list(result.load_balancer_configurations)
return output
except AttributeError:
return result
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'transform_aglistener_output'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '5', 'type': 'block', 'children': ['6', '11', '17']}; {'id': '6', 'type': 'import_from_statement', 'children': ['7', '9']}; {'id': '7', 'type': 'dotted_name', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'collections'}; {'id': '9', 'type': 'dotted_name', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}; {'id': '11', 'type': 'import_from_statement', 'children': ['12', '15']}; {'id': '12', 'type': 'dotted_name', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'msrestazure'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'tools'}; {'id': '15', 'type': 'dotted_name', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'parse_resource_id'}; {'id': '17', 'type': 'try_statement', 'children': ['18', '87']}; {'id': '18', 'type': 'block', 'children': ['19', '37', '67', '85']}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'resource_group'}; {'id': '22', 'type': 'boolean_operator', 'children': ['23', '29'], 'value': 'or'}; {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '25', 'type': 'argument_list', 'children': ['26', '27', '28']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '27', 'type': 'string', 'children': [], 'value': "'resource_group'"}; {'id': '28', 'type': 'None', 'children': []}; {'id': '29', 'type': 'subscript', 'children': ['30', '36']}; {'id': '30', 'type': 'call', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'parse_resource_id'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '36', 'type': 'string', 'children': [], 'value': "'resource_group'"}; {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}; {'id': '43', 'type': 'list', 'children': ['44', '49', '54', '59', '64'], 'value': "[('id', result.id),\n ('name', result.name),\n ('provisioningState', result.provisioning_state),\n ('port', result.port),\n ('resourceGroup', resource_group)]"}; {'id': '44', 'type': 'tuple', 'children': ['45', '46']}; {'id': '45', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '49', 'type': 'tuple', 'children': ['50', '51']}; {'id': '50', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '54', 'type': 'tuple', 'children': ['55', '56']}; {'id': '55', 'type': 'string', 'children': [], 'value': "'provisioningState'"}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'provisioning_state'}; {'id': '59', 'type': 'tuple', 'children': ['60', '61']}; {'id': '60', 'type': 'string', 'children': [], 'value': "'port'"}; {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'port'}; {'id': '64', 'type': 'tuple', 'children': ['65', '66']}; {'id': '65', 'type': 'string', 'children': [], 'value': "'resourceGroup'"}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'resource_group'}; {'id': '67', 'type': 'if_statement', 'children': ['68', '73']}; {'id': '68', 'type': 'comparison_operator', 'children': ['69', '72'], 'value': 'is not'}; {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'load_balancer_configurations'}; {'id': '72', 'type': 'None', 'children': []}; {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}; {'id': '75', 'type': 'assignment', 'children': ['76', '79']}; {'id': '76', 'type': 'subscript', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '78', 'type': 'string', 'children': [], 'value': "'loadBalancerConfigurations'"}; {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'format_load_balancer_configuration_list'}; {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'load_balancer_configurations'}; {'id': '85', 'type': 'return_statement', 'children': ['86']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '87', 'type': 'except_clause', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'AttributeError'}; {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'return_statement', 'children': ['91']}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'result'}
|
Transforms the result of Availability Group Listener to eliminate unnecessary parameters.
|
def hparams_to_batching_scheme(hparams,
drop_long_sequences=False,
shard_multiplier=1,
length_multiplier=1):
return batching_scheme(
batch_size=hparams.batch_size,
min_length=hparams.min_length,
max_length=hparams.max_length,
min_length_bucket=hparams.min_length_bucket,
length_bucket_step=hparams.length_bucket_step,
drop_long_sequences=drop_long_sequences,
shard_multiplier=shard_multiplier,
length_multiplier=length_multiplier)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'hparams_to_batching_scheme'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'drop_long_sequences'}; {'id': '7', 'type': 'False', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'shard_multiplier'}; {'id': '10', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'length_multiplier'}; {'id': '13', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '14', 'type': 'block', 'children': ['15']}; {'id': '15', 'type': 'return_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'batching_scheme'}; {'id': '18', 'type': 'argument_list', 'children': ['19', '24', '29', '34', '39', '44', '47', '50']}; {'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'batch_size'}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'batch_size'}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'min_length'}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'min_length'}; {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'max_length'}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'max_length'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'min_length_bucket'}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'min_length_bucket'}; {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'length_bucket_step'}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'length_bucket_step'}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'drop_long_sequences'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'drop_long_sequences'}; {'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'shard_multiplier'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'shard_multiplier'}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'length_multiplier'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'length_multiplier'}
|
Wrapper around _batching_scheme with hparams.
|
def _ident(*elements):
try:
return len(set(elements)) == 1
except TypeError:
for e1, e2 in zip(elements, elements[1:]):
if e1 != e2:
return False
return True
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_ident'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'list_splat_pattern', 'children': ['5']}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'elements'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'try_statement', 'children': ['8', '19']}; {'id': '8', 'type': 'block', 'children': ['9']}; {'id': '9', 'type': 'return_statement', 'children': ['10']}; {'id': '10', 'type': 'comparison_operator', 'children': ['11', '18'], 'value': '=='}; {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'elements'}; {'id': '18', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '19', 'type': 'except_clause', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '21', 'type': 'block', 'children': ['22', '43']}; {'id': '22', 'type': 'for_statement', 'children': ['23', '26', '35']}; {'id': '23', 'type': 'pattern_list', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'e1'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'e2'}; {'id': '26', 'type': 'call', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'elements'}; {'id': '30', 'type': 'subscript', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'elements'}; {'id': '32', 'type': 'slice', 'children': ['33', '34']}; {'id': '33', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '34', 'type': 'colon', 'children': []}; {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'if_statement', 'children': ['37', '40']}; {'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': '!='}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'e1'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'e2'}; {'id': '40', 'type': 'block', 'children': ['41']}; {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'False', 'children': []}; {'id': '43', 'type': 'return_statement', 'children': ['44']}; {'id': '44', 'type': 'True', 'children': []}
|
Return True if all sequences are equal.
|
def ps():
containers = get_containers()
containers = [pretty_container(c) for c in containers]
print_table(containers, ['name', 'ip', 'ports', 'created', 'image'], sort='name')
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'ps'}; {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '11', '22']}; {'id': '5', 'type': 'expression_statement', 'children': ['6']}; {'id': '6', 'type': 'assignment', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'containers'}; {'id': '8', 'type': 'call', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'get_containers'}; {'id': '10', 'type': 'argument_list', 'children': []}; {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'containers'}; {'id': '14', 'type': 'list_comprehension', 'children': ['15', '19']}; {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'pretty_container'}; {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '19', 'type': 'for_in_clause', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'containers'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'print_table'}; {'id': '25', 'type': 'argument_list', 'children': ['26', '27', '33']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'containers'}; {'id': '27', 'type': 'list', 'children': ['28', '29', '30', '31', '32'], 'value': "['name', 'ip', 'ports', 'created', 'image']"}; {'id': '28', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '29', 'type': 'string', 'children': [], 'value': "'ip'"}; {'id': '30', 'type': 'string', 'children': [], 'value': "'ports'"}; {'id': '31', 'type': 'string', 'children': [], 'value': "'created'"}; {'id': '32', 'type': 'string', 'children': [], 'value': "'image'"}; {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '35', 'type': 'string', 'children': [], 'value': "'name'"}
|
Print a table of all running containers on a host
|
def _next_move_direction(self):
nmoves = len(self.moves)
move = np.random.randint(1, nmoves+1)
while self.prev_move == (move + 3) % nmoves:
move = np.random.randint(1, nmoves+1)
self.prev_move = move
return np.array(self.moves[move])
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_next_move_direction'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '15', '29', '55', '61']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'nmoves'}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'moves'}; {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'move'}; {'id': '18', 'type': 'call', 'children': ['19', '24']}; {'id': '19', 'type': 'attribute', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'randint'}; {'id': '24', 'type': 'argument_list', 'children': ['25', '26']}; {'id': '25', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '26', 'type': 'binary_operator', 'children': ['27', '28'], 'value': '+'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'nmoves'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '29', 'type': 'while_statement', 'children': ['30', '40']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '34'], 'value': '=='}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'prev_move'}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '39'], 'value': '%'}; {'id': '35', 'type': '()', 'children': ['36']}; {'id': '36', 'type': 'binary_operator', 'children': ['37', '38'], 'value': '+'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'move'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'nmoves'}; {'id': '40', 'type': 'block', 'children': ['41']}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'move'}; {'id': '44', 'type': 'call', 'children': ['45', '50']}; {'id': '45', 'type': 'attribute', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'randint'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52']}; {'id': '51', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '52', 'type': 'binary_operator', 'children': ['53', '54'], 'value': '+'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'nmoves'}; {'id': '54', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'prev_move'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'move'}; {'id': '61', 'type': 'return_statement', 'children': ['62']}; {'id': '62', 'type': 'call', 'children': ['63', '66']}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}; {'id': '67', 'type': 'subscript', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'moves'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'move'}
|
pick a move at random from the list of moves
|
def insert(self, resource, doc_or_docs, **kwargs):
ids = []
kwargs.update(self._es_args(resource))
for doc in doc_or_docs:
self._update_parent_args(resource, kwargs, doc)
_id = doc.pop('_id', None)
res = self.elastic(resource).index(body=doc, id=_id, **kwargs)
doc.setdefault('_id', res.get('_id', _id))
ids.append(doc.get('_id'))
self._refresh_resource_index(resource)
return ids
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'insert'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'resource'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'doc_or_docs'}; {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '9', 'type': 'block', 'children': ['10', '14', '26', '96', '103']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '13', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'call', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': '_es_args'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'resource'}; {'id': '26', 'type': 'for_statement', 'children': ['27', '28', '29']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'doc'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'doc_or_docs'}; {'id': '29', 'type': 'block', 'children': ['30', '39', '49', '70', '84']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': '_update_parent_args'}; {'id': '35', 'type': 'argument_list', 'children': ['36', '37', '38']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'resource'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'doc'}; {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': '_id'}; {'id': '42', 'type': 'call', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'doc'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '46', 'type': 'argument_list', 'children': ['47', '48']}; {'id': '47', 'type': 'string', 'children': [], 'value': "'_id'"}; {'id': '48', 'type': 'None', 'children': []}; {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '52', 'type': 'call', 'children': ['53', '61']}; {'id': '53', 'type': 'attribute', 'children': ['54', '60']}; {'id': '54', 'type': 'call', 'children': ['55', '58']}; {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'elastic'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'resource'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '61', 'type': 'argument_list', 'children': ['62', '65', '68']}; {'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'doc'}; {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': '_id'}; {'id': '68', 'type': 'dictionary_splat', 'children': ['69']}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}; {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'doc'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'setdefault'}; {'id': '75', 'type': 'argument_list', 'children': ['76', '77']}; {'id': '76', 'type': 'string', 'children': [], 'value': "'_id'"}; {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '81', 'type': 'argument_list', 'children': ['82', '83']}; {'id': '82', 'type': 'string', 'children': [], 'value': "'_id'"}; {'id': '83', 'type': 'identifier', 'children': [], 'value': '_id'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}; {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '94']}; {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'doc'}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}; {'id': '95', 'type': 'string', 'children': [], 'value': "'_id'"}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}; {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': '_refresh_resource_index'}; {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'resource'}; {'id': '103', 'type': 'return_statement', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'ids'}
|
Insert document, it must be new if there is ``_id`` in it.
|
def _get_domain_text_of_authoritative_zone(self):
from bs4 import BeautifulSoup
zones_response = self.session.get(self.URLS['domain_list'])
self._log('Zone', zones_response)
assert zones_response.status_code == 200, \
'Could not retrieve domain list due to a network error.'
html = BeautifulSoup(zones_response.content, 'html.parser')
self._log('Zone', html)
domain_table = html.find('table', {'id': 'cp_domain_table'})
assert domain_table is not None, 'Could not find domain table'
domain = self.domain or ''
domain_text = None
subdomains = domain.split('.')
while True:
domain = '.'.join(subdomains)
LOGGER.debug('Check if %s has own zone', domain)
domain_text = domain_table.find(string=domain)
if domain_text is not None or len(subdomains) < 3:
break
subdomains.pop(0)
self.domain = domain
assert domain_text is not None, \
'The domain does not exist on Easyname.'
return domain_text
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_domain_text_of_authoritative_zone'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '11', '26', '34', '41', '51', '59', '72', '77', '85', '89', '98', '149', '155', '160']}; {'id': '6', 'type': 'import_from_statement', 'children': ['7', '9']}; {'id': '7', 'type': 'dotted_name', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'bs4'}; {'id': '9', 'type': 'dotted_name', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'BeautifulSoup'}; {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'zones_response'}; {'id': '14', 'type': 'call', 'children': ['15', '20']}; {'id': '15', 'type': 'attribute', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'session'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}; {'id': '21', 'type': 'subscript', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'URLS'}; {'id': '25', 'type': 'string', 'children': [], 'value': "'domain_list'"}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_log'}; {'id': '31', 'type': 'argument_list', 'children': ['32', '33']}; {'id': '32', 'type': 'string', 'children': [], 'value': "'Zone'"}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'zones_response'}; {'id': '34', 'type': 'assert_statement', 'children': ['35', '40']}; {'id': '35', 'type': 'comparison_operator', 'children': ['36', '39'], 'value': '=='}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'zones_response'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'status_code'}; {'id': '39', 'type': 'integer', 'children': [], 'value': '200'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'Could not retrieve domain list due to a network error.'"}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '44', 'type': 'call', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'BeautifulSoup'}; {'id': '46', 'type': 'argument_list', 'children': ['47', '50']}; {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'zones_response'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '50', 'type': 'string', 'children': [], 'value': "'html.parser'"}; {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '56']}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': '_log'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '58']}; {'id': '57', 'type': 'string', 'children': [], 'value': "'Zone'"}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'domain_table'}; {'id': '62', 'type': 'call', 'children': ['63', '66']}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '68']}; {'id': '67', 'type': 'string', 'children': [], 'value': "'table'"}; {'id': '68', 'type': 'dictionary', 'children': ['69']}; {'id': '69', 'type': 'pair', 'children': ['70', '71']}; {'id': '70', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '71', 'type': 'string', 'children': [], 'value': "'cp_domain_table'"}; {'id': '72', 'type': 'assert_statement', 'children': ['73', '76']}; {'id': '73', 'type': 'comparison_operator', 'children': ['74', '75'], 'value': 'is not'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'domain_table'}; {'id': '75', 'type': 'None', 'children': []}; {'id': '76', 'type': 'string', 'children': [], 'value': "'Could not find domain table'"}; {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '80', 'type': 'boolean_operator', 'children': ['81', '84'], 'value': 'or'}; {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '84', 'type': 'string', 'children': [], 'value': "''"}; {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'domain_text'}; {'id': '88', 'type': 'None', 'children': []}; {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '92']}; {'id': '91', 'type': 'identifier', 'children': [], 'value': 'subdomains'}; {'id': '92', 'type': 'call', 'children': ['93', '96']}; {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}; {'id': '97', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '98', 'type': 'while_statement', 'children': ['99', '100']}; {'id': '99', 'type': 'True', 'children': []}; {'id': '100', 'type': 'block', 'children': ['101', '110', '118', '129', '142']}; {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'assignment', 'children': ['103', '104']}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '104', 'type': 'call', 'children': ['105', '108']}; {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '107', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '108', 'type': 'argument_list', 'children': ['109']}; {'id': '109', 'type': 'identifier', 'children': [], 'value': 'subdomains'}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}; {'id': '111', 'type': 'call', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}; {'id': '113', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '115', 'type': 'argument_list', 'children': ['116', '117']}; {'id': '116', 'type': 'string', 'children': [], 'value': "'Check if %s has own zone'"}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}; {'id': '119', 'type': 'assignment', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'domain_text'}; {'id': '121', 'type': 'call', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'domain_table'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'keyword_argument', 'children': ['127', '128']}; {'id': '127', 'type': 'identifier', 'children': [], 'value': 'string'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '129', 'type': 'if_statement', 'children': ['130', '140']}; {'id': '130', 'type': 'boolean_operator', 'children': ['131', '134'], 'value': 'or'}; {'id': '131', 'type': 'comparison_operator', 'children': ['132', '133'], 'value': 'is not'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'domain_text'}; {'id': '133', 'type': 'None', 'children': []}; {'id': '134', 'type': 'comparison_operator', 'children': ['135', '139'], 'value': '<'}; {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'subdomains'}; {'id': '139', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '140', 'type': 'block', 'children': ['141']}; {'id': '141', 'type': 'break_statement', 'children': []}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}; {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}; {'id': '145', 'type': 'identifier', 'children': [], 'value': 'subdomains'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'assignment', 'children': ['151', '154']}; {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '153', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'domain'}; {'id': '155', 'type': 'assert_statement', 'children': ['156', '159']}; {'id': '156', 'type': 'comparison_operator', 'children': ['157', '158'], 'value': 'is not'}; {'id': '157', 'type': 'identifier', 'children': [], 'value': 'domain_text'}; {'id': '158', 'type': 'None', 'children': []}; {'id': '159', 'type': 'string', 'children': [], 'value': "'The domain does not exist on Easyname.'"}; {'id': '160', 'type': 'return_statement', 'children': ['161']}; {'id': '161', 'type': 'identifier', 'children': [], 'value': 'domain_text'}
|
Get the authoritative name zone.
|
def _getID(self):
id = []
for key in self._sqlPrimary:
value = self.__dict__[key]
if isinstance(value, Forgetter):
if value._new:
value.save()
try:
(value,) = value._getID()
except:
raise "Unsupported: Part %s of %s primary key is a reference to %s, with multiple-primary-key %s " % (key, self.__class__, value.__class__, value)
id.append(value)
return id
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_getID'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '10', '74']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'for_statement', 'children': ['11', '12', '15']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_sqlPrimary'}; {'id': '15', 'type': 'block', 'children': ['16', '24', '67']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '19', 'type': 'subscript', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': '__dict__'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '24', 'type': 'if_statement', 'children': ['25', '30']}; {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '27', 'type': 'argument_list', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'Forgetter'}; {'id': '30', 'type': 'block', 'children': ['31', '42']}; {'id': '31', 'type': 'if_statement', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': '_new'}; {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}; {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'save'}; {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'try_statement', 'children': ['43', '53']}; {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}; {'id': '45', 'type': 'assignment', 'children': ['46', '48']}; {'id': '46', 'type': 'tuple_pattern', 'children': ['47']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '48', 'type': 'call', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': '_getID'}; {'id': '52', 'type': 'argument_list', 'children': []}; {'id': '53', 'type': 'except_clause', 'children': ['54']}; {'id': '54', 'type': 'block', 'children': ['55']}; {'id': '55', 'type': 'raise_statement', 'children': ['56']}; {'id': '56', 'type': 'binary_operator', 'children': ['57', '58'], 'value': '%'}; {'id': '57', 'type': 'string', 'children': [], 'value': '"Unsupported: Part %s of %s primary key is a reference to %s, with multiple-primary-key %s "'}; {'id': '58', 'type': 'tuple', 'children': ['59', '60', '63', '66']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': '__class__'}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': '__class__'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '72']}; {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '74', 'type': 'return_statement', 'children': ['75']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'id'}
|
Get the ID values as a tuple annotated by sqlPrimary
|
def pop_trigger(data):
trigger_name = data.pop('trigger')
trigger_args = {}
if trigger_name == 'date':
trigger_arg_names = ('run_date', 'timezone')
elif trigger_name == 'interval':
trigger_arg_names = ('weeks', 'days', 'hours', 'minutes', 'seconds', 'start_date', 'end_date', 'timezone')
elif trigger_name == 'cron':
trigger_arg_names = ('year', 'month', 'day', 'week', 'day_of_week', 'hour', 'minute', 'second', 'start_date', 'end_date', 'timezone')
else:
raise Exception('Trigger %s is not supported.' % trigger_name)
for arg_name in trigger_arg_names:
if arg_name in data:
trigger_args[arg_name] = data.pop(arg_name)
return trigger_name, trigger_args
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'pop_trigger'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '5', 'type': 'block', 'children': ['6', '15', '19', '76', '96']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'trigger_name'}; {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'string', 'children': [], 'value': "'trigger'"}; {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'trigger_args'}; {'id': '18', 'type': 'dictionary', 'children': []}; {'id': '19', 'type': 'if_statement', 'children': ['20', '23', '30', '47', '67']}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': '=='}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'trigger_name'}; {'id': '22', 'type': 'string', 'children': [], 'value': "'date'"}; {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}; {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'trigger_arg_names'}; {'id': '27', 'type': 'tuple', 'children': ['28', '29']}; {'id': '28', 'type': 'string', 'children': [], 'value': "'run_date'"}; {'id': '29', 'type': 'string', 'children': [], 'value': "'timezone'"}; {'id': '30', 'type': 'elif_clause', 'children': ['31', '34']}; {'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': '=='}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'trigger_name'}; {'id': '33', 'type': 'string', 'children': [], 'value': "'interval'"}; {'id': '34', 'type': 'block', 'children': ['35']}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'trigger_arg_names'}; {'id': '38', 'type': 'tuple', 'children': ['39', '40', '41', '42', '43', '44', '45', '46']}; {'id': '39', 'type': 'string', 'children': [], 'value': "'weeks'"}; {'id': '40', 'type': 'string', 'children': [], 'value': "'days'"}; {'id': '41', 'type': 'string', 'children': [], 'value': "'hours'"}; {'id': '42', 'type': 'string', 'children': [], 'value': "'minutes'"}; {'id': '43', 'type': 'string', 'children': [], 'value': "'seconds'"}; {'id': '44', 'type': 'string', 'children': [], 'value': "'start_date'"}; {'id': '45', 'type': 'string', 'children': [], 'value': "'end_date'"}; {'id': '46', 'type': 'string', 'children': [], 'value': "'timezone'"}; {'id': '47', 'type': 'elif_clause', 'children': ['48', '51']}; {'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': '=='}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'trigger_name'}; {'id': '50', 'type': 'string', 'children': [], 'value': "'cron'"}; {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}; {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'trigger_arg_names'}; {'id': '55', 'type': 'tuple', 'children': ['56', '57', '58', '59', '60', '61', '62', '63', '64', '65', '66']}; {'id': '56', 'type': 'string', 'children': [], 'value': "'year'"}; {'id': '57', 'type': 'string', 'children': [], 'value': "'month'"}; {'id': '58', 'type': 'string', 'children': [], 'value': "'day'"}; {'id': '59', 'type': 'string', 'children': [], 'value': "'week'"}; {'id': '60', 'type': 'string', 'children': [], 'value': "'day_of_week'"}; {'id': '61', 'type': 'string', 'children': [], 'value': "'hour'"}; {'id': '62', 'type': 'string', 'children': [], 'value': "'minute'"}; {'id': '63', 'type': 'string', 'children': [], 'value': "'second'"}; {'id': '64', 'type': 'string', 'children': [], 'value': "'start_date'"}; {'id': '65', 'type': 'string', 'children': [], 'value': "'end_date'"}; {'id': '66', 'type': 'string', 'children': [], 'value': "'timezone'"}; {'id': '67', 'type': 'else_clause', 'children': ['68']}; {'id': '68', 'type': 'block', 'children': ['69']}; {'id': '69', 'type': 'raise_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '72']}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}; {'id': '73', 'type': 'binary_operator', 'children': ['74', '75'], 'value': '%'}; {'id': '74', 'type': 'string', 'children': [], 'value': "'Trigger %s is not supported.'"}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'trigger_name'}; {'id': '76', 'type': 'for_statement', 'children': ['77', '78', '79']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'arg_name'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'trigger_arg_names'}; {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'if_statement', 'children': ['81', '84']}; {'id': '81', 'type': 'comparison_operator', 'children': ['82', '83'], 'value': 'in'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'arg_name'}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '84', 'type': 'block', 'children': ['85']}; {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '90']}; {'id': '87', 'type': 'subscript', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'trigger_args'}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'arg_name'}; {'id': '90', 'type': 'call', 'children': ['91', '94']}; {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'arg_name'}; {'id': '96', 'type': 'return_statement', 'children': ['97']}; {'id': '97', 'type': 'expression_list', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'trigger_name'}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'trigger_args'}
|
Pops trigger and trigger args from a given dict.
|
def timex_ends(self):
if not self.is_tagged(TIMEXES):
self.tag_timexes()
return self.ends(TIMEXES)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'timex_ends'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '21']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '14']}; {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'is_tagged'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'TIMEXES'}; {'id': '14', 'type': 'block', 'children': ['15']}; {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'tag_timexes'}; {'id': '20', 'type': 'argument_list', 'children': []}; {'id': '21', 'type': 'return_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '26']}; {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ends'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'TIMEXES'}
|
The list of end positions of ``timexes`` layer elements.
|
def add_definitions(definitions, operations):
for definition_schema in iter_definitions(definitions, operations):
if definition_schema is None:
continue
if isinstance(definition_schema, str):
continue
for name, schema in iter_schemas(definition_schema):
definitions.setdefault(name, swagger.Schema(schema))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_definitions'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'definitions'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'operations'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'for_statement', 'children': ['8', '9', '14']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'definition_schema'}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'iter_definitions'}; {'id': '11', 'type': 'argument_list', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'definitions'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'operations'}; {'id': '14', 'type': 'block', 'children': ['15', '21', '29']}; {'id': '15', 'type': 'if_statement', 'children': ['16', '19']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'is'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'definition_schema'}; {'id': '18', 'type': 'None', 'children': []}; {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'continue_statement', 'children': []}; {'id': '21', 'type': 'if_statement', 'children': ['22', '27']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '24', 'type': 'argument_list', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'definition_schema'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '27', 'type': 'block', 'children': ['28']}; {'id': '28', 'type': 'continue_statement', 'children': []}; {'id': '29', 'type': 'for_statement', 'children': ['30', '33', '37']}; {'id': '30', 'type': 'pattern_list', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'iter_schemas'}; {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'definition_schema'}; {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}; {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'definitions'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'setdefault'}; {'id': '43', 'type': 'argument_list', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'swagger'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'Schema'}; {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'schema'}
|
Add definitions to swagger.
|
def reminders_list(self, **kwargs) -> SlackResponse:
self._validate_xoxp_token()
return self.api_call("reminders.list", http_verb="GET", params=kwargs)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'reminders_list'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'dictionary_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '7', 'type': 'type', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'SlackResponse'}; {'id': '9', 'type': 'block', 'children': ['10', '16']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_validate_xoxp_token'}; {'id': '15', 'type': 'argument_list', 'children': []}; {'id': '16', 'type': 'return_statement', 'children': ['17']}; {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'api_call'}; {'id': '21', 'type': 'argument_list', 'children': ['22', '23', '26']}; {'id': '22', 'type': 'string', 'children': [], 'value': '"reminders.list"'}; {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'http_verb'}; {'id': '25', 'type': 'string', 'children': [], 'value': '"GET"'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'kwargs'}
|
Lists all reminders created by or for a given user.
|
def make_valid_xml_name(key, attr):
LOG.info('Inside make_valid_xml_name(). Testing key "%s" with attr "%s"' % (
unicode_me(key), unicode_me(attr))
)
key = escape_xml(key)
attr = escape_xml(attr)
if key_is_valid_xml(key):
return key, attr
if key.isdigit():
return 'n%s' % (key), attr
if key_is_valid_xml(key.replace(' ', '_')):
return key.replace(' ', '_'), attr
attr['name'] = key
key = 'key'
return key, attr
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'make_valid_xml_name'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '6', 'type': 'block', 'children': ['7', '24', '31', '38', '48', '62', '84', '90', '94']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'LOG'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'binary_operator', 'children': ['14', '15'], 'value': '%'}; {'id': '14', 'type': 'string', 'children': [], 'value': '\'Inside make_valid_xml_name(). Testing key "%s" with attr "%s"\''}; {'id': '15', 'type': 'tuple', 'children': ['16', '20']}; {'id': '16', 'type': 'call', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'unicode_me'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'unicode_me'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}; {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'escape_xml'}; {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '34', 'type': 'call', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'escape_xml'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '38', 'type': 'if_statement', 'children': ['39', '43']}; {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'key_is_valid_xml'}; {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'return_statement', 'children': ['45']}; {'id': '45', 'type': 'expression_list', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '48', 'type': 'if_statement', 'children': ['49', '54']}; {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'isdigit'}; {'id': '53', 'type': 'argument_list', 'children': []}; {'id': '54', 'type': 'block', 'children': ['55']}; {'id': '55', 'type': 'return_statement', 'children': ['56']}; {'id': '56', 'type': 'expression_list', 'children': ['57', '61']}; {'id': '57', 'type': 'binary_operator', 'children': ['58', '59'], 'value': '%'}; {'id': '58', 'type': 'string', 'children': [], 'value': "'n%s'"}; {'id': '59', 'type': '()', 'children': ['60']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '62', 'type': 'if_statement', 'children': ['63', '73']}; {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'key_is_valid_xml'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '70']}; {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'replace'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '72']}; {'id': '71', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '72', 'type': 'string', 'children': [], 'value': "'_'"}; {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'return_statement', 'children': ['75']}; {'id': '75', 'type': 'expression_list', 'children': ['76', '83']}; {'id': '76', 'type': 'call', 'children': ['77', '80']}; {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'replace'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '82']}; {'id': '81', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '82', 'type': 'string', 'children': [], 'value': "'_'"}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}; {'id': '85', 'type': 'assignment', 'children': ['86', '89']}; {'id': '86', 'type': 'subscript', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '88', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}; {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '93', 'type': 'string', 'children': [], 'value': "'key'"}; {'id': '94', 'type': 'return_statement', 'children': ['95']}; {'id': '95', 'type': 'expression_list', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '97', 'type': 'identifier', 'children': [], 'value': 'attr'}
|
Tests an XML name and fixes it if invalid
|
def shortDescription(self):
cd = getattr(self,'classDescription',None)
if cd:
sd = getattr(cd,'shortDescription','')
d = getattr(cd,'description','')
return sd if sd else d
return ''
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'shortDescription'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '15', '41']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'cd'}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '11', 'type': 'argument_list', 'children': ['12', '13', '14']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '13', 'type': 'string', 'children': [], 'value': "'classDescription'"}; {'id': '14', 'type': 'None', 'children': []}; {'id': '15', 'type': 'if_statement', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'cd'}; {'id': '17', 'type': 'block', 'children': ['18', '27', '36']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'sd'}; {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '23', 'type': 'argument_list', 'children': ['24', '25', '26']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'cd'}; {'id': '25', 'type': 'string', 'children': [], 'value': "'shortDescription'"}; {'id': '26', 'type': 'string', 'children': [], 'value': "''"}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '30', 'type': 'call', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '32', 'type': 'argument_list', 'children': ['33', '34', '35']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'cd'}; {'id': '34', 'type': 'string', 'children': [], 'value': "'description'"}; {'id': '35', 'type': 'string', 'children': [], 'value': "''"}; {'id': '36', 'type': 'return_statement', 'children': ['37']}; {'id': '37', 'type': 'conditional_expression', 'children': ['38', '39', '40'], 'value': 'if'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'sd'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sd'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'string', 'children': [], 'value': "''"}
|
Overrides property from Event base class.
|
def write_to_file(self, f):
for section, values in self._values.iteritems():
try:
section_name, subsection_name = section
except ValueError:
(section_name, ) = section
subsection_name = None
if subsection_name is None:
f.write("[%s]\n" % section_name)
else:
f.write("[%s \"%s\"]\n" % (section_name, subsection_name))
for key, value in values.iteritems():
f.write("%s = %s\n" % (key, _escape_value(value)))
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'write_to_file'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'for_statement', 'children': ['8', '11', '18']}; {'id': '8', 'type': 'pattern_list', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'section'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '11', 'type': 'call', 'children': ['12', '17']}; {'id': '12', 'type': 'attribute', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': '_values'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'block', 'children': ['19', '39', '66']}; {'id': '19', 'type': 'try_statement', 'children': ['20', '27']}; {'id': '20', 'type': 'block', 'children': ['21']}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '26']}; {'id': '23', 'type': 'pattern_list', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'section_name'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'subsection_name'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'section'}; {'id': '27', 'type': 'except_clause', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '29', 'type': 'block', 'children': ['30', '35']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'assignment', 'children': ['32', '34']}; {'id': '32', 'type': 'tuple_pattern', 'children': ['33']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'section_name'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'section'}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'subsection_name'}; {'id': '38', 'type': 'None', 'children': []}; {'id': '39', 'type': 'if_statement', 'children': ['40', '43', '53']}; {'id': '40', 'type': 'comparison_operator', 'children': ['41', '42'], 'value': 'is'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'subsection_name'}; {'id': '42', 'type': 'None', 'children': []}; {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}; {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'binary_operator', 'children': ['51', '52'], 'value': '%'}; {'id': '51', 'type': 'string', 'children': [], 'value': '"[%s]\\n"'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'section_name'}; {'id': '53', 'type': 'else_clause', 'children': ['54']}; {'id': '54', 'type': 'block', 'children': ['55']}; {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}; {'id': '61', 'type': 'binary_operator', 'children': ['62', '63'], 'value': '%'}; {'id': '62', 'type': 'string', 'children': [], 'value': '"[%s \\"%s\\"]\\n"'}; {'id': '63', 'type': 'tuple', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'section_name'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'subsection_name'}; {'id': '66', 'type': 'for_statement', 'children': ['67', '70', '75']}; {'id': '67', 'type': 'pattern_list', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '70', 'type': 'call', 'children': ['71', '74']}; {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '74', 'type': 'argument_list', 'children': []}; {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}; {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}; {'id': '79', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'binary_operator', 'children': ['83', '84'], 'value': '%'}; {'id': '83', 'type': 'string', 'children': [], 'value': '"%s = %s\\n"'}; {'id': '84', 'type': 'tuple', 'children': ['85', '86']}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '86', 'type': 'call', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': '_escape_value'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'value'}
|
Write configuration to a file-like object.
|
def switch_or_run(cmd, venv_name=None):
if cmd:
return _run(venv_name, cmd)
inenv = InenvManager()
if not os.getenv(INENV_ENV_VAR):
activator_warn(inenv)
return
else:
venv = inenv.get_prepped_venv(venv_name)
inenv.clear_extra_source_file()
inenv.write_extra_source_file("source {}".format(venv.activate_shell_file))
inenv.write_extra_source_file(override_envars_and_deactivate(inenv.get_envvars(venv_name)))
if autojump_enabled():
directory = inenv.guess_contents_dir(venv_name)
inenv.write_extra_source_file('cd {}'.format(directory))
click.secho("Jumping to {}".format(directory), fg='green')
sys.exit(EVAL_EXIT_CODE)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'switch_or_run'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'venv_name'}; {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '18', '24']}; {'id': '9', 'type': 'if_statement', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_run'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'venv_name'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'inenv'}; {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'InenvManager'}; {'id': '23', 'type': 'argument_list', 'children': []}; {'id': '24', 'type': 'if_statement', 'children': ['25', '32', '39']}; {'id': '25', 'type': 'not_operator', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'getenv'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'INENV_ENV_VAR'}; {'id': '32', 'type': 'block', 'children': ['33', '38']}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'activator_warn'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'inenv'}; {'id': '38', 'type': 'return_statement', 'children': []}; {'id': '39', 'type': 'else_clause', 'children': ['40']}; {'id': '40', 'type': 'block', 'children': ['41', '50', '56', '70', '85', '126']}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'venv'}; {'id': '44', 'type': 'call', 'children': ['45', '48']}; {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'inenv'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'get_prepped_venv'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'venv_name'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}; {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'inenv'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'clear_extra_source_file'}; {'id': '55', 'type': 'argument_list', 'children': []}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}; {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'inenv'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'write_extra_source_file'}; {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'call', 'children': ['63', '66']}; {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'string', 'children': [], 'value': '"source {}"'}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}; {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'venv'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'activate_shell_file'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}; {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'inenv'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'write_extra_source_file'}; {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'override_envars_and_deactivate'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}; {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'inenv'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'get_envvars'}; {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'venv_name'}; {'id': '85', 'type': 'if_statement', 'children': ['86', '89']}; {'id': '86', 'type': 'call', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'autojump_enabled'}; {'id': '88', 'type': 'argument_list', 'children': []}; {'id': '89', 'type': 'block', 'children': ['90', '99', '111']}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}; {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'inenv'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'guess_contents_dir'}; {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'venv_name'}; {'id': '99', 'type': 'expression_statement', 'children': ['100']}; {'id': '100', 'type': 'call', 'children': ['101', '104']}; {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'inenv'}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'write_extra_source_file'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}; {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}; {'id': '107', 'type': 'string', 'children': [], 'value': "'cd {}'"}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'call', 'children': ['113', '116']}; {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '115', 'type': 'identifier', 'children': [], 'value': 'secho'}; {'id': '116', 'type': 'argument_list', 'children': ['117', '123']}; {'id': '117', 'type': 'call', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}; {'id': '119', 'type': 'string', 'children': [], 'value': '"Jumping to {}"'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '123', 'type': 'keyword_argument', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'fg'}; {'id': '125', 'type': 'string', 'children': [], 'value': "'green'"}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}; {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}; {'id': '129', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'EVAL_EXIT_CODE'}
|
Switch or run in this env
|
def from_statement(cls, statement):
if statement[0] in ["TS", "TIMESTAMP", "UTCTIMESTAMP", "UTCTS"]:
return TimestampFunction.from_statement(statement)
elif statement[0] in ["NOW", "UTCNOW"]:
return NowFunction.from_statement(statement)
else:
raise SyntaxError("Unknown function %r" % statement[0])
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'from_statement'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'statement'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'if_statement', 'children': ['8', '17', '25', '41']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '12'], 'value': 'in'}; {'id': '9', 'type': 'subscript', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'statement'}; {'id': '11', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '12', 'type': 'list', 'children': ['13', '14', '15', '16'], 'value': '["TS", "TIMESTAMP", "UTCTIMESTAMP", "UTCTS"]'}; {'id': '13', 'type': 'string', 'children': [], 'value': '"TS"'}; {'id': '14', 'type': 'string', 'children': [], 'value': '"TIMESTAMP"'}; {'id': '15', 'type': 'string', 'children': [], 'value': '"UTCTIMESTAMP"'}; {'id': '16', 'type': 'string', 'children': [], 'value': '"UTCTS"'}; {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'return_statement', 'children': ['19']}; {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'TimestampFunction'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'from_statement'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'statement'}; {'id': '25', 'type': 'elif_clause', 'children': ['26', '33']}; {'id': '26', 'type': 'comparison_operator', 'children': ['27', '30'], 'value': 'in'}; {'id': '27', 'type': 'subscript', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'statement'}; {'id': '29', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '30', 'type': 'list', 'children': ['31', '32'], 'value': '["NOW", "UTCNOW"]'}; {'id': '31', 'type': 'string', 'children': [], 'value': '"NOW"'}; {'id': '32', 'type': 'string', 'children': [], 'value': '"UTCNOW"'}; {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'return_statement', 'children': ['35']}; {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'NowFunction'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'from_statement'}; {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'statement'}; {'id': '41', 'type': 'else_clause', 'children': ['42']}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'raise_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}; {'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '%'}; {'id': '48', 'type': 'string', 'children': [], 'value': '"Unknown function %r"'}; {'id': '49', 'type': 'subscript', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'statement'}; {'id': '51', 'type': 'integer', 'children': [], 'value': '0'}
|
Create a selection function from a statement
|
def Start(self):
if self.hunt_obj.Get(self.hunt_obj.Schema.STATE) == "STARTED":
return
self.context.duration = self.runner_args.expiry_time
self.context.next_client_due = rdfvalue.RDFDatetime.Now()
self._CreateAuditEvent("HUNT_STARTED")
self.hunt_obj.Set(self.hunt_obj.Schema.STATE("STARTED"))
self.hunt_obj.Flush()
if self.runner_args.add_foreman_rules:
self._AddForemanRule()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'Start'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '25', '37', '51', '58', '76', '84']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '23']}; {'id': '7', 'type': 'comparison_operator', 'children': ['8', '22'], 'value': '=='}; {'id': '8', 'type': 'call', 'children': ['9', '14']}; {'id': '9', 'type': 'attribute', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'hunt_obj'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'Get'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}; {'id': '15', 'type': 'attribute', 'children': ['16', '21']}; {'id': '16', 'type': 'attribute', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'hunt_obj'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'Schema'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'STATE'}; {'id': '22', 'type': 'string', 'children': [], 'value': '"STARTED"'}; {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'return_statement', 'children': []}; {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '32']}; {'id': '27', 'type': 'attribute', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'duration'}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'runner_args'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'expiry_time'}; {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '44']}; {'id': '39', 'type': 'attribute', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'next_client_due'}; {'id': '44', 'type': 'call', 'children': ['45', '50']}; {'id': '45', 'type': 'attribute', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'rdfvalue'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'RDFDatetime'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'Now'}; {'id': '50', 'type': 'argument_list', 'children': []}; {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '56']}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': '_CreateAuditEvent'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}; {'id': '57', 'type': 'string', 'children': [], 'value': '"HUNT_STARTED"'}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}; {'id': '59', 'type': 'call', 'children': ['60', '65']}; {'id': '60', 'type': 'attribute', 'children': ['61', '64']}; {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'hunt_obj'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'Set'}; {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '74']}; {'id': '67', 'type': 'attribute', 'children': ['68', '73']}; {'id': '68', 'type': 'attribute', 'children': ['69', '72']}; {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'hunt_obj'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'Schema'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'STATE'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}; {'id': '75', 'type': 'string', 'children': [], 'value': '"STARTED"'}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}; {'id': '77', 'type': 'call', 'children': ['78', '83']}; {'id': '78', 'type': 'attribute', 'children': ['79', '82']}; {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'hunt_obj'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'Flush'}; {'id': '83', 'type': 'argument_list', 'children': []}; {'id': '84', 'type': 'if_statement', 'children': ['85', '90']}; {'id': '85', 'type': 'attribute', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'runner_args'}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'add_foreman_rules'}; {'id': '90', 'type': 'block', 'children': ['91']}; {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '96']}; {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': '_AddForemanRule'}; {'id': '96', 'type': 'argument_list', 'children': []}
|
This uploads the rules to the foreman and, thus, starts the hunt.
|
def _is_modification_or_activity(feature):
if not (isinstance(feature, _bp('ModificationFeature')) or \
isinstance(feature, _bpimpl('ModificationFeature'))):
return None
mf_type = feature.getModificationType()
if mf_type is None:
return None
mf_type_terms = mf_type.getTerm().toArray()
for term in mf_type_terms:
if term in ('residue modification, active',
'residue modification, inactive',
'active', 'inactive'):
return 'activity'
return 'modification'
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_is_modification_or_activity'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'feature'}; {'id': '5', 'type': 'block', 'children': ['6', '30', '38', '45', '57', '72']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '27']}; {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': '()', 'children': ['9']}; {'id': '9', 'type': 'boolean_operator', 'children': ['10', '18', '19'], 'value': 'or'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '12', 'type': 'argument_list', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'feature'}; {'id': '14', 'type': 'call', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': '_bp'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}; {'id': '17', 'type': 'string', 'children': [], 'value': "'ModificationFeature'"}; {'id': '18', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '21', 'type': 'argument_list', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'feature'}; {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_bpimpl'}; {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'string', 'children': [], 'value': "'ModificationFeature'"}; {'id': '27', 'type': 'block', 'children': ['28']}; {'id': '28', 'type': 'return_statement', 'children': ['29']}; {'id': '29', 'type': 'None', 'children': []}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'mf_type'}; {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'feature'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'getModificationType'}; {'id': '37', 'type': 'argument_list', 'children': []}; {'id': '38', 'type': 'if_statement', 'children': ['39', '42']}; {'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': 'is'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'mf_type'}; {'id': '41', 'type': 'None', 'children': []}; {'id': '42', 'type': 'block', 'children': ['43']}; {'id': '43', 'type': 'return_statement', 'children': ['44']}; {'id': '44', 'type': 'None', 'children': []}; {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'mf_type_terms'}; {'id': '48', 'type': 'call', 'children': ['49', '56']}; {'id': '49', 'type': 'attribute', 'children': ['50', '55']}; {'id': '50', 'type': 'call', 'children': ['51', '54']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'mf_type'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'getTerm'}; {'id': '54', 'type': 'argument_list', 'children': []}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'toArray'}; {'id': '56', 'type': 'argument_list', 'children': []}; {'id': '57', 'type': 'for_statement', 'children': ['58', '59', '60']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'term'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'mf_type_terms'}; {'id': '60', 'type': 'block', 'children': ['61']}; {'id': '61', 'type': 'if_statement', 'children': ['62', '69']}; {'id': '62', 'type': 'comparison_operator', 'children': ['63', '64'], 'value': 'in'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'term'}; {'id': '64', 'type': 'tuple', 'children': ['65', '66', '67', '68']}; {'id': '65', 'type': 'string', 'children': [], 'value': "'residue modification, active'"}; {'id': '66', 'type': 'string', 'children': [], 'value': "'residue modification, inactive'"}; {'id': '67', 'type': 'string', 'children': [], 'value': "'active'"}; {'id': '68', 'type': 'string', 'children': [], 'value': "'inactive'"}; {'id': '69', 'type': 'block', 'children': ['70']}; {'id': '70', 'type': 'return_statement', 'children': ['71']}; {'id': '71', 'type': 'string', 'children': [], 'value': "'activity'"}; {'id': '72', 'type': 'return_statement', 'children': ['73']}; {'id': '73', 'type': 'string', 'children': [], 'value': "'modification'"}
|
Return True if the feature is a modification
|
def _debug(self, out, print_prefix=True):
if self.debug:
if print_prefix:
pre = self.__class__.__name__
if hasattr(self, 'debug_prefix'):
pre = getattr(self, 'debug_prefix')
sys.stderr.write("%s: " % pre)
sys.stderr.write(out)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_debug'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'print_prefix'}; {'id': '8', 'type': 'True', 'children': []}; {'id': '9', 'type': 'block', 'children': ['10']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '14', 'type': 'block', 'children': ['15', '52']}; {'id': '15', 'type': 'if_statement', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'print_prefix'}; {'id': '17', 'type': 'block', 'children': ['18', '26', '41']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}; {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'pre'}; {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '__class__'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '32']}; {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '29', 'type': 'argument_list', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'string', 'children': [], 'value': "'debug_prefix'"}; {'id': '32', 'type': 'block', 'children': ['33']}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'pre'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'debug_prefix'"}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '48']}; {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}; {'id': '49', 'type': 'binary_operator', 'children': ['50', '51'], 'value': '%'}; {'id': '50', 'type': 'string', 'children': [], 'value': '"%s: "'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'pre'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}; {'id': '53', 'type': 'call', 'children': ['54', '59']}; {'id': '54', 'type': 'attribute', 'children': ['55', '58']}; {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'out'}
|
Print out to stderr, if debugging is enabled.
|
def lookup(self):
assert not self.is_existing
try:
a = SocialAccount.objects.get(provider=self.account.provider,
uid=self.account.uid)
a.extra_data = self.account.extra_data
self.account = a
self.user = self.account.user
a.save()
if app_settings.STORE_TOKENS and self.token:
assert not self.token.pk
try:
t = SocialToken.objects.get(account=self.account,
app=self.token.app)
t.token = self.token.token
if self.token.token_secret:
t.token_secret = self.token.token_secret
t.expires_at = self.token.expires_at
t.save()
self.token = t
except SocialToken.DoesNotExist:
self.token.account = a
self.token.save()
except SocialAccount.DoesNotExist:
pass
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'lookup'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '11']}; {'id': '6', 'type': 'assert_statement', 'children': ['7']}; {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'is_existing'}; {'id': '11', 'type': 'try_statement', 'children': ['12', '179']}; {'id': '12', 'type': 'block', 'children': ['13', '37', '47', '53', '63', '69']}; {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '16', 'type': 'call', 'children': ['17', '22']}; {'id': '17', 'type': 'attribute', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'SocialAccount'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '30']}; {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'provider'}; {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'provider'}; {'id': '30', 'type': 'keyword_argument', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'uid'}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'uid'}; {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '42']}; {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'extra_data'}; {'id': '42', 'type': 'attribute', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'extra_data'}; {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '58']}; {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '58', 'type': 'attribute', 'children': ['59', '62']}; {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'call', 'children': ['65', '68']}; {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'save'}; {'id': '68', 'type': 'argument_list', 'children': []}; {'id': '69', 'type': 'if_statement', 'children': ['70', '77']}; {'id': '70', 'type': 'boolean_operator', 'children': ['71', '74'], 'value': 'and'}; {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'app_settings'}; {'id': '73', 'type': 'identifier', 'children': [], 'value': 'STORE_TOKENS'}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '77', 'type': 'block', 'children': ['78', '85']}; {'id': '78', 'type': 'assert_statement', 'children': ['79']}; {'id': '79', 'type': 'not_operator', 'children': ['80']}; {'id': '80', 'type': 'attribute', 'children': ['81', '84']}; {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '83', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'pk'}; {'id': '85', 'type': 'try_statement', 'children': ['86', '158']}; {'id': '86', 'type': 'block', 'children': ['87', '109', '119', '136', '146', '152']}; {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '90', 'type': 'call', 'children': ['91', '96']}; {'id': '91', 'type': 'attribute', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}; {'id': '93', 'type': 'identifier', 'children': [], 'value': 'SocialToken'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '95', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '96', 'type': 'argument_list', 'children': ['97', '102']}; {'id': '97', 'type': 'keyword_argument', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '101', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '102', 'type': 'keyword_argument', 'children': ['103', '104']}; {'id': '103', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '104', 'type': 'attribute', 'children': ['105', '108']}; {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '107', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '114']}; {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '113', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '114', 'type': 'attribute', 'children': ['115', '118']}; {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '117', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '119', 'type': 'if_statement', 'children': ['120', '125']}; {'id': '120', 'type': 'attribute', 'children': ['121', '124']}; {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '123', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'token_secret'}; {'id': '125', 'type': 'block', 'children': ['126']}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}; {'id': '127', 'type': 'assignment', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}; {'id': '129', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'token_secret'}; {'id': '131', 'type': 'attribute', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}; {'id': '133', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '135', 'type': 'identifier', 'children': [], 'value': 'token_secret'}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}; {'id': '137', 'type': 'assignment', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}; {'id': '139', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'expires_at'}; {'id': '141', 'type': 'attribute', 'children': ['142', '145']}; {'id': '142', 'type': 'attribute', 'children': ['143', '144']}; {'id': '143', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '145', 'type': 'identifier', 'children': [], 'value': 'expires_at'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}; {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}; {'id': '149', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'save'}; {'id': '151', 'type': 'argument_list', 'children': []}; {'id': '152', 'type': 'expression_statement', 'children': ['153']}; {'id': '153', 'type': 'assignment', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}; {'id': '155', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '157', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '158', 'type': 'except_clause', 'children': ['159', '162']}; {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'SocialToken'}; {'id': '161', 'type': 'identifier', 'children': [], 'value': 'DoesNotExist'}; {'id': '162', 'type': 'block', 'children': ['163', '171']}; {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'assignment', 'children': ['165', '170']}; {'id': '165', 'type': 'attribute', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}; {'id': '167', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '169', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'call', 'children': ['173', '178']}; {'id': '173', 'type': 'attribute', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}; {'id': '175', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '177', 'type': 'identifier', 'children': [], 'value': 'save'}; {'id': '178', 'type': 'argument_list', 'children': []}; {'id': '179', 'type': 'except_clause', 'children': ['180', '183']}; {'id': '180', 'type': 'attribute', 'children': ['181', '182']}; {'id': '181', 'type': 'identifier', 'children': [], 'value': 'SocialAccount'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'DoesNotExist'}; {'id': '183', 'type': 'block', 'children': ['184']}; {'id': '184', 'type': 'pass_statement', 'children': []}
|
Lookup existing account, if any.
|
def _get_data_collections(dnr_values, dhr_values, metadata, timestep, is_leap_year):
analysis_period = AnalysisPeriod(timestep=timestep, is_leap_year=is_leap_year)
dnr_header = Header(data_type=DirectNormalIrradiance(),
unit='W/m2',
analysis_period=analysis_period,
metadata=metadata)
direct_norm_rad = HourlyContinuousCollection(dnr_header, dnr_values)
dhr_header = Header(data_type=DiffuseHorizontalIrradiance(),
unit='W/m2',
analysis_period=analysis_period,
metadata=metadata)
diffuse_horiz_rad = HourlyContinuousCollection(dhr_header, dhr_values)
return direct_norm_rad, diffuse_horiz_rad
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_data_collections'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'dnr_values'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'dhr_values'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'timestep'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'is_leap_year'}; {'id': '9', 'type': 'block', 'children': ['10', '22', '42', '50', '70', '78']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}; {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'analysis_period'}; {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'AnalysisPeriod'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '19']}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'timestep'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'timestep'}; {'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'is_leap_year'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'is_leap_year'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'dnr_header'}; {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'Header'}; {'id': '27', 'type': 'argument_list', 'children': ['28', '33', '36', '39']}; {'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'data_type'}; {'id': '30', 'type': 'call', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'DirectNormalIrradiance'}; {'id': '32', 'type': 'argument_list', 'children': []}; {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '35', 'type': 'string', 'children': [], 'value': "'W/m2'"}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'analysis_period'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'analysis_period'}; {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}; {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'direct_norm_rad'}; {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'HourlyContinuousCollection'}; {'id': '47', 'type': 'argument_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'dnr_header'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'dnr_values'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}; {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'dhr_header'}; {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'Header'}; {'id': '55', 'type': 'argument_list', 'children': ['56', '61', '64', '67']}; {'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'data_type'}; {'id': '58', 'type': 'call', 'children': ['59', '60']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'DiffuseHorizontalIrradiance'}; {'id': '60', 'type': 'argument_list', 'children': []}; {'id': '61', 'type': 'keyword_argument', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '63', 'type': 'string', 'children': [], 'value': "'W/m2'"}; {'id': '64', 'type': 'keyword_argument', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'analysis_period'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'analysis_period'}; {'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '69', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}; {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'diffuse_horiz_rad'}; {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'HourlyContinuousCollection'}; {'id': '75', 'type': 'argument_list', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'dhr_header'}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'dhr_values'}; {'id': '78', 'type': 'return_statement', 'children': ['79']}; {'id': '79', 'type': 'expression_list', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'direct_norm_rad'}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'diffuse_horiz_rad'}
|
Return two data collections for Direct Normal , Diffuse Horizontal
|
def dumps():
d = {}
for k, v in FILTERS.items():
d[dr.get_name(k)] = list(v)
return _dumps(d)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'dumps'}; {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '9', '33']}; {'id': '5', 'type': 'expression_statement', 'children': ['6']}; {'id': '6', 'type': 'assignment', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '8', 'type': 'dictionary', 'children': []}; {'id': '9', 'type': 'for_statement', 'children': ['10', '13', '18']}; {'id': '10', 'type': 'pattern_list', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'FILTERS'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'block', 'children': ['19']}; {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '29']}; {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'dr'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'get_name'}; {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '33', 'type': 'return_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': '_dumps'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'd'}
|
Returns a string representation of the FILTERS dictionary.
|
def process_documentline(line, nanopubs_metadata):
matches = re.match('SET DOCUMENT\s+(\w+)\s+=\s+"?(.*?)"?$', line)
key = matches.group(1)
val = matches.group(2)
nanopubs_metadata[key] = val
return nanopubs_metadata
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'process_documentline'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'nanopubs_metadata'}; {'id': '6', 'type': 'block', 'children': ['7', '17', '26', '35', '41']}; {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'matches'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}; {'id': '15', 'type': 'string', 'children': [], 'value': '\'SET DOCUMENT\\s+(\\w+)\\s+=\\s+"?(.*?)"?$\''}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}; {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'matches'}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}; {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'matches'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '40']}; {'id': '37', 'type': 'subscript', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'nanopubs_metadata'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'nanopubs_metadata'}
|
Process SET DOCUMENT line in BEL script
|
def total_core(self):
corefile = os.path.join(self.reffilepath, self.analysistype, 'Escherichia', 'core_combined.fasta')
for record in SeqIO.parse(corefile, 'fasta'):
gene_name = record.id.split('-')[0]
if gene_name not in self.coregenomes:
self.coregenomes.append(gene_name)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'total_core'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '24']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'corefile'}; {'id': '9', 'type': 'call', 'children': ['10', '15']}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}; {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '15', 'type': 'argument_list', 'children': ['16', '19', '22', '23']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'reffilepath'}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'analysistype'}; {'id': '22', 'type': 'string', 'children': [], 'value': "'Escherichia'"}; {'id': '23', 'type': 'string', 'children': [], 'value': "'core_combined.fasta'"}; {'id': '24', 'type': 'for_statement', 'children': ['25', '26', '33']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'record'}; {'id': '26', 'type': 'call', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'SeqIO'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'parse'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'corefile'}; {'id': '32', 'type': 'string', 'children': [], 'value': "'fasta'"}; {'id': '33', 'type': 'block', 'children': ['34', '47']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}; {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'gene_name'}; {'id': '37', 'type': 'subscript', 'children': ['38', '46']}; {'id': '38', 'type': 'call', 'children': ['39', '44']}; {'id': '39', 'type': 'attribute', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'record'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}; {'id': '45', 'type': 'string', 'children': [], 'value': "'-'"}; {'id': '46', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '47', 'type': 'if_statement', 'children': ['48', '53']}; {'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': 'not in'}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'gene_name'}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'coregenomes'}; {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}; {'id': '55', 'type': 'call', 'children': ['56', '61']}; {'id': '56', 'type': 'attribute', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'coregenomes'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'gene_name'}
|
Determine the total number of core genes present
|
def fai_from_bam(ref_file, bam_file, out_file, data):
contigs = set([x.contig for x in idxstats(bam_file, data)])
if not utils.file_uptodate(out_file, bam_file):
with open(ref.fasta_idx(ref_file, data["config"])) as in_handle:
with file_transaction(data, out_file) as tx_out_file:
with open(tx_out_file, "w") as out_handle:
for line in (l for l in in_handle if l.strip()):
if line.split()[0] in contigs:
out_handle.write(line)
return out_file
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fai_from_bam'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'ref_file'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'bam_file'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'out_file'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '8', 'type': 'block', 'children': ['9', '26', '111']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'contigs'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}; {'id': '15', 'type': 'list_comprehension', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'contig'}; {'id': '19', 'type': 'for_in_clause', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'idxstats'}; {'id': '23', 'type': 'argument_list', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'bam_file'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '35']}; {'id': '27', 'type': 'not_operator', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'file_uptodate'}; {'id': '32', 'type': 'argument_list', 'children': ['33', '34']}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'out_file'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'bam_file'}; {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'with_statement', 'children': ['37', '54']}; {'id': '37', 'type': 'with_clause', 'children': ['38']}; {'id': '38', 'type': 'with_item', 'children': ['39']}; {'id': '39', 'type': 'as_pattern', 'children': ['40', '52']}; {'id': '40', 'type': 'call', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}; {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'ref'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'fasta_idx'}; {'id': '47', 'type': 'argument_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'ref_file'}; {'id': '49', 'type': 'subscript', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '51', 'type': 'string', 'children': [], 'value': '"config"'}; {'id': '52', 'type': 'as_pattern_target', 'children': ['53']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'in_handle'}; {'id': '54', 'type': 'block', 'children': ['55']}; {'id': '55', 'type': 'with_statement', 'children': ['56', '66']}; {'id': '56', 'type': 'with_clause', 'children': ['57']}; {'id': '57', 'type': 'with_item', 'children': ['58']}; {'id': '58', 'type': 'as_pattern', 'children': ['59', '64']}; {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'file_transaction'}; {'id': '61', 'type': 'argument_list', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'out_file'}; {'id': '64', 'type': 'as_pattern_target', 'children': ['65']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'tx_out_file'}; {'id': '66', 'type': 'block', 'children': ['67']}; {'id': '67', 'type': 'with_statement', 'children': ['68', '78']}; {'id': '68', 'type': 'with_clause', 'children': ['69']}; {'id': '69', 'type': 'with_item', 'children': ['70']}; {'id': '70', 'type': 'as_pattern', 'children': ['71', '76']}; {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '73', 'type': 'argument_list', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'tx_out_file'}; {'id': '75', 'type': 'string', 'children': [], 'value': '"w"'}; {'id': '76', 'type': 'as_pattern_target', 'children': ['77']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'out_handle'}; {'id': '78', 'type': 'block', 'children': ['79']}; {'id': '79', 'type': 'for_statement', 'children': ['80', '81', '92']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '81', 'type': 'generator_expression', 'children': ['82', '83', '86']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '83', 'type': 'for_in_clause', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '85', 'type': 'identifier', 'children': [], 'value': 'in_handle'}; {'id': '86', 'type': 'if_clause', 'children': ['87']}; {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}; {'id': '89', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '91', 'type': 'argument_list', 'children': []}; {'id': '92', 'type': 'block', 'children': ['93']}; {'id': '93', 'type': 'if_statement', 'children': ['94', '103']}; {'id': '94', 'type': 'comparison_operator', 'children': ['95', '102'], 'value': 'in'}; {'id': '95', 'type': 'subscript', 'children': ['96', '101']}; {'id': '96', 'type': 'call', 'children': ['97', '100']}; {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '99', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '100', 'type': 'argument_list', 'children': []}; {'id': '101', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'contigs'}; {'id': '103', 'type': 'block', 'children': ['104']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}; {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}; {'id': '107', 'type': 'identifier', 'children': [], 'value': 'out_handle'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '111', 'type': 'return_statement', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'out_file'}
|
Create a fai index with only contigs in the input BAM file.
|
def clear_document(self):
self._components.clear()
self._sequences.clear()
self._namespaces.clear()
self._models.clear()
self._modules.clear()
self._collections.clear()
self._annotations.clear()
self._functional_component_store.clear()
self._collection_store.clear()
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'clear_document'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '14', '22', '30', '38', '46', '54', '62', '70']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '13']}; {'id': '8', 'type': 'attribute', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': '_components'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'clear'}; {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'call', 'children': ['16', '21']}; {'id': '16', 'type': 'attribute', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': '_sequences'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'clear'}; {'id': '21', 'type': 'argument_list', 'children': []}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'call', 'children': ['24', '29']}; {'id': '24', 'type': 'attribute', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': '_namespaces'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'clear'}; {'id': '29', 'type': 'argument_list', 'children': []}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}; {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': '_models'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'clear'}; {'id': '37', 'type': 'argument_list', 'children': []}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}; {'id': '39', 'type': 'call', 'children': ['40', '45']}; {'id': '40', 'type': 'attribute', 'children': ['41', '44']}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': '_modules'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'clear'}; {'id': '45', 'type': 'argument_list', 'children': []}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}; {'id': '47', 'type': 'call', 'children': ['48', '53']}; {'id': '48', 'type': 'attribute', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': '_collections'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'clear'}; {'id': '53', 'type': 'argument_list', 'children': []}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}; {'id': '55', 'type': 'call', 'children': ['56', '61']}; {'id': '56', 'type': 'attribute', 'children': ['57', '60']}; {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': '_annotations'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'clear'}; {'id': '61', 'type': 'argument_list', 'children': []}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}; {'id': '63', 'type': 'call', 'children': ['64', '69']}; {'id': '64', 'type': 'attribute', 'children': ['65', '68']}; {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '67', 'type': 'identifier', 'children': [], 'value': '_functional_component_store'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'clear'}; {'id': '69', 'type': 'argument_list', 'children': []}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}; {'id': '71', 'type': 'call', 'children': ['72', '77']}; {'id': '72', 'type': 'attribute', 'children': ['73', '76']}; {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '75', 'type': 'identifier', 'children': [], 'value': '_collection_store'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'clear'}; {'id': '77', 'type': 'argument_list', 'children': []}
|
Clears ALL items from document, reseting it to clean
|
def process_cpp(self, path, suffix):
_cpplint_state.ResetErrorCounts()
cpplint.ProcessFile(str(path), _cpplint_state.verbose_level)
_cpplint_state.PrintErrorCounts()
errors = _cpplint_state.errors_by_category.copy()
if suffix == 'h':
self.cpp_header_map[str(path)] = errors
else:
self.cpp_src_map[str(path)] = errors
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'process_cpp'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '7', 'type': 'block', 'children': ['8', '14', '27', '33', '43']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}; {'id': '9', 'type': 'call', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': '_cpplint_state'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'ResetErrorCounts'}; {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}; {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'cpplint'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'ProcessFile'}; {'id': '19', 'type': 'argument_list', 'children': ['20', '24']}; {'id': '20', 'type': 'call', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': '_cpplint_state'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'verbose_level'}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_cpplint_state'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'PrintErrorCounts'}; {'id': '32', 'type': 'argument_list', 'children': []}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '36', 'type': 'call', 'children': ['37', '42']}; {'id': '37', 'type': 'attribute', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': '_cpplint_state'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'errors_by_category'}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '42', 'type': 'argument_list', 'children': []}; {'id': '43', 'type': 'if_statement', 'children': ['44', '47', '59']}; {'id': '44', 'type': 'comparison_operator', 'children': ['45', '46'], 'value': '=='}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '46', 'type': 'string', 'children': [], 'value': "'h'"}; {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}; {'id': '49', 'type': 'assignment', 'children': ['50', '58']}; {'id': '50', 'type': 'subscript', 'children': ['51', '54']}; {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'cpp_header_map'}; {'id': '54', 'type': 'call', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '59', 'type': 'else_clause', 'children': ['60']}; {'id': '60', 'type': 'block', 'children': ['61']}; {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '71']}; {'id': '63', 'type': 'subscript', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}; {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'cpp_src_map'}; {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '71', 'type': 'identifier', 'children': [], 'value': 'errors'}
|
Process a cpp file.
|
def rollforward(self, date):
if self.onOffset(date):
return date
else:
return date + YearBegin(month=self.month)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'rollforward'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'date'}; {'id': '6', 'type': 'block', 'children': ['7']}; {'id': '7', 'type': 'if_statement', 'children': ['8', '14', '17']}; {'id': '8', 'type': 'call', 'children': ['9', '12']}; {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'onOffset'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'date'}; {'id': '14', 'type': 'block', 'children': ['15']}; {'id': '15', 'type': 'return_statement', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'date'}; {'id': '17', 'type': 'else_clause', 'children': ['18']}; {'id': '18', 'type': 'block', 'children': ['19']}; {'id': '19', 'type': 'return_statement', 'children': ['20']}; {'id': '20', 'type': 'binary_operator', 'children': ['21', '22'], 'value': '+'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'date'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'YearBegin'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}; {'id': '25', 'type': 'keyword_argument', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'month'}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'month'}
|
Roll date forward to nearest start of year
|
def cyvcf_add_filter(rec, name):
if rec.FILTER:
filters = rec.FILTER.split(";")
else:
filters = []
if name not in filters:
filters.append(name)
rec.FILTER = filters
return rec
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cyvcf_add_filter'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '6', 'type': 'block', 'children': ['7', '29', '47']}; {'id': '7', 'type': 'if_statement', 'children': ['8', '11', '23']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'FILTER'}; {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '15', 'type': 'call', 'children': ['16', '21']}; {'id': '16', 'type': 'attribute', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'FILTER'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'string', 'children': [], 'value': '";"'}; {'id': '23', 'type': 'else_clause', 'children': ['24']}; {'id': '24', 'type': 'block', 'children': ['25']}; {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '28', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '29', 'type': 'if_statement', 'children': ['30', '33']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': 'not in'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '33', 'type': 'block', 'children': ['34', '41']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}; {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'FILTER'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '47', 'type': 'return_statement', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'rec'}
|
Add a FILTER value to a cyvcf2 record
|
def lstm_init_states(batch_size):
hp = Hyperparams()
init_shapes = lstm.init_states(batch_size=batch_size, num_lstm_layer=hp.num_lstm_layer, num_hidden=hp.num_hidden)
init_names = [s[0] for s in init_shapes]
init_arrays = [mx.nd.zeros(x[1]) for x in init_shapes]
return init_names, init_arrays
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'lstm_init_states'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'batch_size'}; {'id': '5', 'type': 'block', 'children': ['6', '12', '33', '43', '60']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'hp'}; {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'Hyperparams'}; {'id': '11', 'type': 'argument_list', 'children': []}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}; {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'init_shapes'}; {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'lstm'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'init_states'}; {'id': '19', 'type': 'argument_list', 'children': ['20', '23', '28']}; {'id': '20', 'type': 'keyword_argument', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'batch_size'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'batch_size'}; {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'num_lstm_layer'}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'hp'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'num_lstm_layer'}; {'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'num_hidden'}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}; {'id': '31', 'type': 'identifier', 'children': [], 'value': 'hp'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'num_hidden'}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'init_names'}; {'id': '36', 'type': 'list_comprehension', 'children': ['37', '40']}; {'id': '37', 'type': 'subscript', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '39', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '40', 'type': 'for_in_clause', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'init_shapes'}; {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'init_arrays'}; {'id': '46', 'type': 'list_comprehension', 'children': ['47', '57']}; {'id': '47', 'type': 'call', 'children': ['48', '53']}; {'id': '48', 'type': 'attribute', 'children': ['49', '52']}; {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'mx'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'nd'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'zeros'}; {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'subscript', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '56', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '57', 'type': 'for_in_clause', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'init_shapes'}; {'id': '60', 'type': 'return_statement', 'children': ['61']}; {'id': '61', 'type': 'expression_list', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'init_names'}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'init_arrays'}
|
Returns a tuple of names and zero arrays for LSTM init states
|
def write_json_plan(self, proposed_layout, proposed_plan_file):
with open(proposed_plan_file, 'w') as output:
json.dump(proposed_layout, output)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'write_json_plan'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'proposed_layout'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'proposed_plan_file'}; {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'with_statement', 'children': ['9', '19']}; {'id': '9', 'type': 'with_clause', 'children': ['10']}; {'id': '10', 'type': 'with_item', 'children': ['11']}; {'id': '11', 'type': 'as_pattern', 'children': ['12', '17']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'proposed_plan_file'}; {'id': '16', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '17', 'type': 'as_pattern_target', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}; {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'dump'}; {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'proposed_layout'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'output'}
|
Dump proposed json plan to given output file for future usage.
|
def transformer_parsing_big():
hparams = transformer_big()
hparams.max_length = 512
hparams.shared_source_target_embedding = False
hparams.learning_rate_warmup_steps = 4000
hparams.layer_prepostprocess_dropout = 0.1
hparams.batch_size = 2048
hparams.learning_rate = 0.05
return hparams
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'transformer_parsing_big'}; {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '11', '17', '23', '29', '35', '41', '47']}; {'id': '5', 'type': 'expression_statement', 'children': ['6']}; {'id': '6', 'type': 'assignment', 'children': ['7', '8']}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '8', 'type': 'call', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'transformer_big'}; {'id': '10', 'type': 'argument_list', 'children': []}; {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'max_length'}; {'id': '16', 'type': 'integer', 'children': [], 'value': '512'}; {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '22']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'shared_source_target_embedding'}; {'id': '22', 'type': 'False', 'children': []}; {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '28']}; {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'learning_rate_warmup_steps'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '4000'}; {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '34']}; {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '33', 'type': 'identifier', 'children': [], 'value': 'layer_prepostprocess_dropout'}; {'id': '34', 'type': 'float', 'children': [], 'value': '0.1'}; {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '40']}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'batch_size'}; {'id': '40', 'type': 'integer', 'children': [], 'value': '2048'}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '46']}; {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'hparams'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'learning_rate'}; {'id': '46', 'type': 'float', 'children': [], 'value': '0.05'}; {'id': '47', 'type': 'return_statement', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'hparams'}
|
HParams for parsing on WSJ semi-supervised.
|
def tag(self, *tag, **kwtags):
if not tag:
pass
elif len(tag) == 1 and isinstance(tag[0], dict):
self._meta.update(tag[0])
else:
raise TypeError('Tags must be provided as key-word arguments or '
'a dictionary')
self._meta.update(kwtags)
return self
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'tag'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'list_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwtags'}; {'id': '9', 'type': 'block', 'children': ['10', '51', '60']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '13', '15', '42']}; {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'pass_statement', 'children': []}; {'id': '15', 'type': 'elif_clause', 'children': ['16', '30']}; {'id': '16', 'type': 'boolean_operator', 'children': ['17', '23'], 'value': 'and'}; {'id': '17', 'type': 'comparison_operator', 'children': ['18', '22'], 'value': '=='}; {'id': '18', 'type': 'call', 'children': ['19', '20']}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '22', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '25', 'type': 'argument_list', 'children': ['26', '29']}; {'id': '26', 'type': 'subscript', 'children': ['27', '28']}; {'id': '27', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '30', 'type': 'block', 'children': ['31']}; {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '38']}; {'id': '33', 'type': 'attribute', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': '_meta'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}; {'id': '39', 'type': 'subscript', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '41', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '42', 'type': 'else_clause', 'children': ['43']}; {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'raise_statement', 'children': ['45']}; {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'concatenated_string', 'children': ['49', '50']}; {'id': '49', 'type': 'string', 'children': [], 'value': "'Tags must be provided as key-word arguments or '"}; {'id': '50', 'type': 'string', 'children': [], 'value': "'a dictionary'"}; {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '58']}; {'id': '53', 'type': 'attribute', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': '_meta'}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}; {'id': '59', 'type': 'identifier', 'children': [], 'value': 'kwtags'}; {'id': '60', 'type': 'return_statement', 'children': ['61']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'}
|
Tag a Property instance with metadata dictionary
|
def cli(env, identifier, allocation, port, routing_type, routing_method):
mgr = SoftLayer.LoadBalancerManager(env.client)
_, loadbal_id = loadbal.parse_id(identifier)
mgr.add_service_group(loadbal_id,
allocation=allocation,
port=port,
routing_type=routing_type,
routing_method=routing_method)
env.fout('Load balancer service group is being added!')
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cli'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'identifier'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'allocation'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'port'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'routing_type'}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'routing_method'}; {'id': '10', 'type': 'block', 'children': ['11', '22', '33', '52']}; {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'mgr'}; {'id': '14', 'type': 'call', 'children': ['15', '18']}; {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'SoftLayer'}; {'id': '17', 'type': 'identifier', 'children': [], 'value': 'LoadBalancerManager'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}; {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'assignment', 'children': ['24', '27']}; {'id': '24', 'type': 'pattern_list', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'loadbal_id'}; {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'loadbal'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'parse_id'}; {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'identifier'}; {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}; {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'mgr'}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'add_service_group'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '40', '43', '46', '49']}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'loadbal_id'}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'allocation'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'allocation'}; {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'port'}; {'id': '45', 'type': 'identifier', 'children': [], 'value': 'port'}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'routing_type'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'routing_type'}; {'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'routing_method'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'routing_method'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}; {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'fout'}; {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'string', 'children': [], 'value': "'Load balancer service group is being added!'"}
|
Adds a new load_balancer service.
|
def read_chunked(self):
self._load_metadata()
for i in range(self.npartitions):
yield self._get_partition(i)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'read_chunked'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '12']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}; {'id': '7', 'type': 'call', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': '_load_metadata'}; {'id': '11', 'type': 'argument_list', 'children': []}; {'id': '12', 'type': 'for_statement', 'children': ['13', '14', '20']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '14', 'type': 'call', 'children': ['15', '16']}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'npartitions'}; {'id': '20', 'type': 'block', 'children': ['21']}; {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'yield', 'children': ['23']}; {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': '_get_partition'}; {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'i'}
|
Return iterator over container fragments of data source
|
def init(self):
if not self.export_enable:
return None
try:
parameters = pika.URLParameters(
'amqp://' + self.user +
':' + self.password +
'@' + self.host +
':' + self.port + '/')
connection = pika.BlockingConnection(parameters)
channel = connection.channel()
return channel
except Exception as e:
logger.critical("Connection to rabbitMQ failed : %s " % e)
return None
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'init'}; {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'block', 'children': ['6', '14']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '11']}; {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'export_enable'}; {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}; {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'try_statement', 'children': ['15', '68']}; {'id': '15', 'type': 'block', 'children': ['16', '49', '58', '66']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}; {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'pika'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'URLParameters'}; {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'binary_operator', 'children': ['25', '48'], 'value': '+'}; {'id': '25', 'type': 'binary_operator', 'children': ['26', '45'], 'value': '+'}; {'id': '26', 'type': 'binary_operator', 'children': ['27', '44'], 'value': '+'}; {'id': '27', 'type': 'binary_operator', 'children': ['28', '41'], 'value': '+'}; {'id': '28', 'type': 'binary_operator', 'children': ['29', '40'], 'value': '+'}; {'id': '29', 'type': 'binary_operator', 'children': ['30', '37'], 'value': '+'}; {'id': '30', 'type': 'binary_operator', 'children': ['31', '36'], 'value': '+'}; {'id': '31', 'type': 'binary_operator', 'children': ['32', '33'], 'value': '+'}; {'id': '32', 'type': 'string', 'children': [], 'value': "'amqp://'"}; {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '36', 'type': 'string', 'children': [], 'value': "':'"}; {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '39', 'type': 'identifier', 'children': [], 'value': 'password'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'@'"}; {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'host'}; {'id': '44', 'type': 'string', 'children': [], 'value': "':'"}; {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'port'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'/'"}; {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'connection'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}; {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'pika'}; {'id': '55', 'type': 'identifier', 'children': [], 'value': 'BlockingConnection'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}; {'id': '57', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}; {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'channel'}; {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}; {'id': '63', 'type': 'identifier', 'children': [], 'value': 'connection'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'channel'}; {'id': '65', 'type': 'argument_list', 'children': []}; {'id': '66', 'type': 'return_statement', 'children': ['67']}; {'id': '67', 'type': 'identifier', 'children': [], 'value': 'channel'}; {'id': '68', 'type': 'except_clause', 'children': ['69', '73']}; {'id': '69', 'type': 'as_pattern', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '71', 'type': 'as_pattern_target', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '73', 'type': 'block', 'children': ['74', '83']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}; {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}; {'id': '77', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'critical'}; {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'binary_operator', 'children': ['81', '82'], 'value': '%'}; {'id': '81', 'type': 'string', 'children': [], 'value': '"Connection to rabbitMQ failed : %s "'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '83', 'type': 'return_statement', 'children': ['84']}; {'id': '84', 'type': 'None', 'children': []}
|
Init the connection to the rabbitmq server.
|
def delete_os_dummy_rtr_nwk(self, rtr_id, net_id, subnet_id):
subnet_lst = set()
subnet_lst.add(subnet_id)
ret = self.os_helper.delete_intf_router(None, None, rtr_id, subnet_lst)
if not ret:
return ret
return self.os_helper.delete_network_all_subnets(net_id)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'delete_os_dummy_rtr_nwk'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'rtr_id'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'net_id'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'subnet_id'}; {'id': '8', 'type': 'block', 'children': ['9', '15', '22', '36', '42']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'subnet_lst'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}; {'id': '13', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '14', 'type': 'argument_list', 'children': []}; {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'subnet_lst'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}; {'id': '21', 'type': 'identifier', 'children': [], 'value': 'subnet_id'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}; {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '25', 'type': 'call', 'children': ['26', '31']}; {'id': '26', 'type': 'attribute', 'children': ['27', '30']}; {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'os_helper'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'delete_intf_router'}; {'id': '31', 'type': 'argument_list', 'children': ['32', '33', '34', '35']}; {'id': '32', 'type': 'None', 'children': []}; {'id': '33', 'type': 'None', 'children': []}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'rtr_id'}; {'id': '35', 'type': 'identifier', 'children': [], 'value': 'subnet_lst'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '39']}; {'id': '37', 'type': 'not_operator', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'return_statement', 'children': ['41']}; {'id': '41', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '42', 'type': 'return_statement', 'children': ['43']}; {'id': '43', 'type': 'call', 'children': ['44', '49']}; {'id': '44', 'type': 'attribute', 'children': ['45', '48']}; {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'os_helper'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'delete_network_all_subnets'}; {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'net_id'}
|
Delete the dummy interface to the router.
|
def sponsor_or_site(self, value):
if value not in Comment.VALID_SPONSOR_OR_SITE_RESPONSES:
raise AttributeError("%s sponsor_or_site value of %s is not valid" % (self.__class__.__name__,
value))
self._sponsor_or_site = value
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sponsor_or_site'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '6', 'type': 'block', 'children': ['7', '27']}; {'id': '7', 'type': 'if_statement', 'children': ['8', '13']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': 'not in'}; {'id': '9', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'Comment'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'VALID_SPONSOR_OR_SITE_RESPONSES'}; {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'raise_statement', 'children': ['15']}; {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'AttributeError'}; {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'binary_operator', 'children': ['19', '20'], 'value': '%'}; {'id': '19', 'type': 'string', 'children': [], 'value': '"%s sponsor_or_site value of %s is not valid"'}; {'id': '20', 'type': 'tuple', 'children': ['21', '26']}; {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}; {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '__class__'}; {'id': '25', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '32']}; {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '31', 'type': 'identifier', 'children': [], 'value': '_sponsor_or_site'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'value'}
|
Set Originator with validation of input
|
def cli(env, volume_id, reason, immediate):
file_storage_manager = SoftLayer.FileStorageManager(env.client)
if not (env.skip_confirmations or formatting.no_going_back(volume_id)):
raise exceptions.CLIAbort('Aborted')
cancelled = file_storage_manager.cancel_snapshot_space(
volume_id, reason, immediate)
if cancelled:
if immediate:
click.echo('File volume with id %s has been marked'
' for immediate snapshot cancellation' % volume_id)
else:
click.echo('File volume with id %s has been marked'
' for snapshot cancellation' % volume_id)
else:
click.echo('Unable to cancel snapshot space for file volume %s'
% volume_id)
|
{'id': '0', 'type': 'module', 'children': ['1']}; {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cli'}; {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '5', 'type': 'identifier', 'children': [], 'value': 'volume_id'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'reason'}; {'id': '7', 'type': 'identifier', 'children': [], 'value': 'immediate'}; {'id': '8', 'type': 'block', 'children': ['9', '20', '41', '52']}; {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}; {'id': '11', 'type': 'identifier', 'children': [], 'value': 'file_storage_manager'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}; {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'SoftLayer'}; {'id': '15', 'type': 'identifier', 'children': [], 'value': 'FileStorageManager'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}; {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '19', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '20', 'type': 'if_statement', 'children': ['21', '33']}; {'id': '21', 'type': 'not_operator', 'children': ['22']}; {'id': '22', 'type': '()', 'children': ['23']}; {'id': '23', 'type': 'boolean_operator', 'children': ['24', '27'], 'value': 'or'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}; {'id': '25', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'skip_confirmations'}; {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}; {'id': '29', 'type': 'identifier', 'children': [], 'value': 'formatting'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'no_going_back'}; {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'volume_id'}; {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'raise_statement', 'children': ['35']}; {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}; {'id': '37', 'type': 'identifier', 'children': [], 'value': 'exceptions'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'CLIAbort'}; {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'string', 'children': [], 'value': "'Aborted'"}; {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}; {'id': '43', 'type': 'identifier', 'children': [], 'value': 'cancelled'}; {'id': '44', 'type': 'call', 'children': ['45', '48']}; {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'file_storage_manager'}; {'id': '47', 'type': 'identifier', 'children': [], 'value': 'cancel_snapshot_space'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50', '51']}; {'id': '49', 'type': 'identifier', 'children': [], 'value': 'volume_id'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'reason'}; {'id': '51', 'type': 'identifier', 'children': [], 'value': 'immediate'}; {'id': '52', 'type': 'if_statement', 'children': ['53', '54', '82']}; {'id': '53', 'type': 'identifier', 'children': [], 'value': 'cancelled'}; {'id': '54', 'type': 'block', 'children': ['55']}; {'id': '55', 'type': 'if_statement', 'children': ['56', '57', '69']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'immediate'}; {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}; {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}; {'id': '61', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'echo'}; {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'binary_operator', 'children': ['65', '68'], 'value': '%'}; {'id': '65', 'type': 'concatenated_string', 'children': ['66', '67']}; {'id': '66', 'type': 'string', 'children': [], 'value': "'File volume with id %s has been marked'"}; {'id': '67', 'type': 'string', 'children': [], 'value': "' for immediate snapshot cancellation'"}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'volume_id'}; {'id': '69', 'type': 'else_clause', 'children': ['70']}; {'id': '70', 'type': 'block', 'children': ['71']}; {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}; {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '75', 'type': 'identifier', 'children': [], 'value': 'echo'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}; {'id': '77', 'type': 'binary_operator', 'children': ['78', '81'], 'value': '%'}; {'id': '78', 'type': 'concatenated_string', 'children': ['79', '80']}; {'id': '79', 'type': 'string', 'children': [], 'value': "'File volume with id %s has been marked'"}; {'id': '80', 'type': 'string', 'children': [], 'value': "' for snapshot cancellation'"}; {'id': '81', 'type': 'identifier', 'children': [], 'value': 'volume_id'}; {'id': '82', 'type': 'else_clause', 'children': ['83']}; {'id': '83', 'type': 'block', 'children': ['84']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}; {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}; {'id': '87', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'echo'}; {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'binary_operator', 'children': ['91', '92'], 'value': '%'}; {'id': '91', 'type': 'string', 'children': [], 'value': "'Unable to cancel snapshot space for file volume %s'"}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'volume_id'}
|
Cancel existing snapshot space for a given volume.
|
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