sequence
stringlengths 1.25k
34.6k
| code
stringlengths 75
8.58k
|
|---|---|
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '23']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'commit'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '7', 'type': 'string', 'children': [], 'value': '""'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'confirmed'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'comment'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'at_time'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'synchronize'},{'id': '19', 'type': 'False', 'children': []},{'id': '20', 'type': 'default_parameter', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'req_format'},{'id': '22', 'type': 'string', 'children': [], 'value': "'text'"},{'id': '23', 'type': 'block', 'children': ['24', '32', '36', '50', '56', '70', '74', '123', '129', '253']},{'id': '24', 'type': 'if_statement', 'children': ['25', '27']},{'id': '25', 'type': 'not_operator', 'children': ['26']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '27', 'type': 'block', 'children': ['28']},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '31', 'type': 'string', 'children': [], 'value': '\'annotate system ""\''},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'clean_cmds'},{'id': '35', 'type': 'list', 'children': [], 'value': '[]'},{'id': '36', 'type': 'for_statement', 'children': ['37', '38', '42']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'clean_lines'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '42', 'type': 'block', 'children': ['43']},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'clean_cmds'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'lock'},{'id': '55', 'type': 'argument_list', 'children': []},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '63']},{'id': '58', 'type': 'attribute', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '61', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'load_configuration'},{'id': '63', 'type': 'argument_list', 'children': ['64', '67']},{'id': '64', 'type': 'keyword_argument', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '66', 'type': 'string', 'children': [], 'value': "'set'"},{'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '73', 'type': 'string', 'children': [], 'value': '""'},{'id': '74', 'type': 'if_statement', 'children': ['75', '76', '102']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'confirmed'},{'id': '76', 'type': 'block', 'children': ['77']},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '80', 'type': 'call', 'children': ['81', '86']},{'id': '81', 'type': 'attribute', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '84', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'commit'},{'id': '86', 'type': 'argument_list', 'children': ['87', '90', '96', '99']},{'id': '87', 'type': 'keyword_argument', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'confirmed'},{'id': '89', 'type': 'True', 'children': []},{'id': '90', 'type': 'keyword_argument', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'timeout'},{'id': '92', 'type': 'call', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'confirmed'},{'id': '96', 'type': 'keyword_argument', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'comment'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'comment'},{'id': '99', 'type': 'keyword_argument', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'synchronize'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'synchronize'},{'id': '102', 'type': 'else_clause', 'children': ['103']},{'id': '103', 'type': 'block', 'children': ['104']},{'id': '104', 'type': 'expression_statement', 'children': ['105']},{'id': '105', 'type': 'assignment', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '107', 'type': 'call', 'children': ['108', '113']},{'id': '108', 'type': 'attribute', 'children': ['109', '112']},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '111', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'commit'},{'id': '113', 'type': 'argument_list', 'children': ['114', '117', '120']},{'id': '114', 'type': 'keyword_argument', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'comment'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'comment'},{'id': '117', 'type': 'keyword_argument', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'at_time'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'at_time'},{'id': '120', 'type': 'keyword_argument', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'synchronize'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'synchronize'},{'id': '123', 'type': 'expression_statement', 'children': ['124']},{'id': '124', 'type': 'call', 'children': ['125', '128']},{'id': '125', 'type': 'attribute', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'unlock'},{'id': '128', 'type': 'argument_list', 'children': []},{'id': '129', 'type': 'if_statement', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '131', 'type': 'block', 'children': ['132', '139', '150', '154', '251']},{'id': '132', 'type': 'if_statement', 'children': ['133', '136']},{'id': '133', 'type': 'comparison_operator', 'children': ['134', '135'], 'value': '=='},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'req_format'},{'id': '135', 'type': 'string', 'children': [], 'value': "'xml'"},{'id': '136', 'type': 'block', 'children': ['137']},{'id': '137', 'type': 'return_statement', 'children': ['138']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'assignment', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'fromstring'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'tostring'},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'assignment', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '153', 'type': 'string', 'children': [], 'value': "''"},{'id': '154', 'type': 'for_statement', 'children': ['155', '156', '161']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '156', 'type': 'call', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'iter'},{'id': '160', 'type': 'argument_list', 'children': []},{'id': '161', 'type': 'block', 'children': ['162']},{'id': '162', 'type': 'if_statement', 'children': ['163', '168', '173', '184', '195', '227']},{'id': '163', 'type': 'comparison_operator', 'children': ['164', '167'], 'value': '=='},{'id': '164', 'type': 'attribute', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '167', 'type': 'string', 'children': [], 'value': "'commit-check-success'"},{'id': '168', 'type': 'block', 'children': ['169']},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'augmented_assignment', 'children': ['171', '172'], 'value': '+='},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '172', 'type': 'string', 'children': [], 'value': "'configuration check succeeds\\n'"},{'id': '173', 'type': 'elif_clause', 'children': ['174', '179']},{'id': '174', 'type': 'comparison_operator', 'children': ['175', '178'], 'value': '=='},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '178', 'type': 'string', 'children': [], 'value': "'commit-success'"},{'id': '179', 'type': 'block', 'children': ['180']},{'id': '180', 'type': 'expression_statement', 'children': ['181']},{'id': '181', 'type': 'augmented_assignment', 'children': ['182', '183'], 'value': '+='},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '183', 'type': 'string', 'children': [], 'value': "'commit complete\\n'"},{'id': '184', 'type': 'elif_clause', 'children': ['185', '190']},{'id': '185', 'type': 'comparison_operator', 'children': ['186', '189'], 'value': '=='},{'id': '186', 'type': 'attribute', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '189', 'type': 'string', 'children': [], 'value': "'ok'"},{'id': '190', 'type': 'block', 'children': ['191']},{'id': '191', 'type': 'expression_statement', 'children': ['192']},{'id': '192', 'type': 'augmented_assignment', 'children': ['193', '194'], 'value': '+='},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '194', 'type': 'string', 'children': [], 'value': "'commit complete\\n'"},{'id': '195', 'type': 'elif_clause', 'children': ['196', '201']},{'id': '196', 'type': 'comparison_operator', 'children': ['197', '200'], 'value': 'is'},{'id': '197', 'type': 'attribute', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '200', 'type': 'None', 'children': []},{'id': '201', 'type': 'block', 'children': ['202']},{'id': '202', 'type': 'if_statement', 'children': ['203', '214']},{'id': '203', 'type': 'comparison_operator', 'children': ['204', '213'], 'value': '!='},{'id': '204', 'type': 'binary_operator', 'children': ['205', '212'], 'value': '+'},{'id': '205', 'type': 'call', 'children': ['206', '211']},{'id': '206', 'type': 'attribute', 'children': ['207', '210']},{'id': '207', 'type': 'attribute', 'children': ['208', '209']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '211', 'type': 'argument_list', 'children': []},{'id': '212', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '213', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '214', 'type': 'block', 'children': ['215']},{'id': '215', 'type': 'expression_statement', 'children': ['216']},{'id': '216', 'type': 'augmented_assignment', 'children': ['217', '218'], 'value': '+='},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '218', 'type': 'binary_operator', 'children': ['219', '226'], 'value': '+'},{'id': '219', 'type': 'call', 'children': ['220', '225']},{'id': '220', 'type': 'attribute', 'children': ['221', '224']},{'id': '221', 'type': 'attribute', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '225', 'type': 'argument_list', 'children': []},{'id': '226', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '227', 'type': 'elif_clause', 'children': ['228', '233']},{'id': '228', 'type': 'comparison_operator', 'children': ['229', '232'], 'value': 'is'},{'id': '229', 'type': 'attribute', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '232', 'type': 'None', 'children': []},{'id': '233', 'type': 'block', 'children': ['234']},{'id': '234', 'type': 'if_statement', 'children': ['235', '242']},{'id': '235', 'type': 'comparison_operator', 'children': ['236', '241'], 'value': '!='},{'id': '236', 'type': 'binary_operator', 'children': ['237', '240'], 'value': '+'},{'id': '237', 'type': 'attribute', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '240', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '241', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '242', 'type': 'block', 'children': ['243']},{'id': '243', 'type': 'expression_statement', 'children': ['244']},{'id': '244', 'type': 'augmented_assignment', 'children': ['245', '246'], 'value': '+='},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '246', 'type': 'binary_operator', 'children': ['247', '250'], 'value': '+'},{'id': '247', 'type': 'attribute', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '250', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '251', 'type': 'return_statement', 'children': ['252']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '253', 'type': 'return_statement', 'children': ['254']},{'id': '254', 'type': 'False', 'children': []} | def commit(self, commands="", confirmed=None, comment=None,
at_time=None, synchronize=False, req_format='text'):
if not commands:
commands = 'annotate system ""'
clean_cmds = []
for cmd in clean_lines(commands):
clean_cmds.append(cmd)
self.lock()
self._session.load_configuration(action='set', config=commands)
results = ""
if confirmed:
results = self._session.commit(confirmed=True,
timeout=str(confirmed),
comment=comment,
synchronize=synchronize)
else:
results = self._session.commit(comment=comment, at_time=at_time,
synchronize=synchronize)
self.unlock()
if results:
if req_format == 'xml':
return results
results = ET.fromstring(results.tostring)
out = ''
for i in results.iter():
if i.tag == 'commit-check-success':
out += 'configuration check succeeds\n'
elif i.tag == 'commit-success':
out += 'commit complete\n'
elif i.tag == 'ok':
out += 'commit complete\n'
elif i.text is not None:
if i.text.strip() + '\n' != '\n':
out += i.text.strip() + '\n'
elif i.text is None:
if i.tag + '\n' != '\n':
out += i.tag + '\n'
return out
return False |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'commit_check'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '7', 'type': 'string', 'children': [], 'value': '""'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'req_format'},{'id': '10', 'type': 'string', 'children': [], 'value': '"text"'},{'id': '11', 'type': 'block', 'children': ['12', '21', '25', '39', '45', '59', '79', '85', '97', '101', '176']},{'id': '12', 'type': 'if_statement', 'children': ['13', '15']},{'id': '13', 'type': 'not_operator', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '15', 'type': 'block', 'children': ['16']},{'id': '16', 'type': 'raise_statement', 'children': ['17']},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'InvalidCommandError'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'string', 'children': [], 'value': "'No commands specified'"},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'clean_cmds'},{'id': '24', 'type': 'list', 'children': [], 'value': '[]'},{'id': '25', 'type': 'for_statement', 'children': ['26', '27', '31']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'clean_lines'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'clean_cmds'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'lock'},{'id': '44', 'type': 'argument_list', 'children': []},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '52']},{'id': '47', 'type': 'attribute', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '50', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'load_configuration'},{'id': '52', 'type': 'argument_list', 'children': ['53', '56']},{'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '55', 'type': 'string', 'children': [], 'value': "'set'"},{'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'clean_cmds'},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '62', 'type': 'call', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'fromstring'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'attribute', 'children': ['68', '78']},{'id': '68', 'type': 'call', 'children': ['69', '74']},{'id': '69', 'type': 'attribute', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '72', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'validate'},{'id': '74', 'type': 'argument_list', 'children': ['75']},{'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '77', 'type': 'string', 'children': [], 'value': "'candidate'"},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'tostring'},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'call', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'unlock'},{'id': '84', 'type': 'argument_list', 'children': []},{'id': '85', 'type': 'if_statement', 'children': ['86', '89']},{'id': '86', 'type': 'comparison_operator', 'children': ['87', '88'], 'value': '=='},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'req_format'},{'id': '88', 'type': 'string', 'children': [], 'value': '"xml"'},{'id': '89', 'type': 'block', 'children': ['90']},{'id': '90', 'type': 'return_statement', 'children': ['91']},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'tostring'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '100', 'type': 'string', 'children': [], 'value': '""'},{'id': '101', 'type': 'for_statement', 'children': ['102', '103', '108']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'iter'},{'id': '107', 'type': 'argument_list', 'children': []},{'id': '108', 'type': 'block', 'children': ['109']},{'id': '109', 'type': 'if_statement', 'children': ['110', '115', '120', '152']},{'id': '110', 'type': 'comparison_operator', 'children': ['111', '114'], 'value': '=='},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '114', 'type': 'string', 'children': [], 'value': "'commit-check-success'"},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'augmented_assignment', 'children': ['118', '119'], 'value': '+='},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '119', 'type': 'string', 'children': [], 'value': "'configuration check succeeds\\n'"},{'id': '120', 'type': 'elif_clause', 'children': ['121', '126']},{'id': '121', 'type': 'comparison_operator', 'children': ['122', '125'], 'value': 'is'},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '125', 'type': 'None', 'children': []},{'id': '126', 'type': 'block', 'children': ['127']},{'id': '127', 'type': 'if_statement', 'children': ['128', '139']},{'id': '128', 'type': 'comparison_operator', 'children': ['129', '138'], 'value': '!='},{'id': '129', 'type': 'binary_operator', 'children': ['130', '137'], 'value': '+'},{'id': '130', 'type': 'call', 'children': ['131', '136']},{'id': '131', 'type': 'attribute', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '136', 'type': 'argument_list', 'children': []},{'id': '137', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '138', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '139', 'type': 'block', 'children': ['140']},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'augmented_assignment', 'children': ['142', '143'], 'value': '+='},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '143', 'type': 'binary_operator', 'children': ['144', '151'], 'value': '+'},{'id': '144', 'type': 'call', 'children': ['145', '150']},{'id': '145', 'type': 'attribute', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '150', 'type': 'argument_list', 'children': []},{'id': '151', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '152', 'type': 'elif_clause', 'children': ['153', '158']},{'id': '153', 'type': 'comparison_operator', 'children': ['154', '157'], 'value': 'is'},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '157', 'type': 'None', 'children': []},{'id': '158', 'type': 'block', 'children': ['159']},{'id': '159', 'type': 'if_statement', 'children': ['160', '167']},{'id': '160', 'type': 'comparison_operator', 'children': ['161', '166'], 'value': '!='},{'id': '161', 'type': 'binary_operator', 'children': ['162', '165'], 'value': '+'},{'id': '162', 'type': 'attribute', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '165', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '166', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '167', 'type': 'block', 'children': ['168']},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'augmented_assignment', 'children': ['170', '171'], 'value': '+='},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '171', 'type': 'binary_operator', 'children': ['172', '175'], 'value': '+'},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '175', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '176', 'type': 'return_statement', 'children': ['177']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'out'} | def commit_check(self, commands="", req_format="text"):
if not commands:
raise InvalidCommandError('No commands specified')
clean_cmds = []
for cmd in clean_lines(commands):
clean_cmds.append(cmd)
self.lock()
self._session.load_configuration(action='set', config=clean_cmds)
results = ET.fromstring(self._session.validate(
source='candidate').tostring)
self.unlock()
if req_format == "xml":
return ET.tostring(results)
out = ""
for i in results.iter():
if i.tag == 'commit-check-success':
out += 'configuration check succeeds\n'
elif i.text is not None:
if i.text.strip() + '\n' != '\n':
out += i.text.strip() + '\n'
elif i.text is None:
if i.tag + '\n' != '\n':
out += i.tag + '\n'
return out |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'connect'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '91', '382']},{'id': '6', 'type': 'if_statement', 'children': ['7', '12']},{'id': '7', 'type': 'comparison_operator', 'children': ['8', '11'], 'value': '=='},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '11', 'type': 'string', 'children': [], 'value': "'paramiko'"},{'id': '12', 'type': 'block', 'children': ['13', '23', '36', '45', '58']},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'assignment', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '17', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'paramiko'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'SSHClient'},{'id': '22', 'type': 'argument_list', 'children': []},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '26', 'type': 'call', 'children': ['27', '34']},{'id': '27', 'type': 'attribute', 'children': ['28', '33']},{'id': '28', 'type': 'attribute', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'Logger'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'getLogger'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'string', 'children': [], 'value': "'paramiko.transport'"},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'setLevel'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'CRITICAL'},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '52']},{'id': '47', 'type': 'attribute', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '50', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'set_missing_host_key_policy'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'paramiko'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'AutoAddPolicy'},{'id': '57', 'type': 'argument_list', 'children': []},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '65']},{'id': '60', 'type': 'attribute', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '65', 'type': 'argument_list', 'children': ['66', '71', '76', '81', '86']},{'id': '66', 'type': 'keyword_argument', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'hostname'},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '71', 'type': 'keyword_argument', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '76', 'type': 'keyword_argument', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'password'},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'password'},{'id': '81', 'type': 'keyword_argument', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '86', 'type': 'keyword_argument', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'timeout'},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'connect_timeout'},{'id': '91', 'type': 'if_statement', 'children': ['92', '97', '191', '242', '333']},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '96'], 'value': '=='},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '96', 'type': 'string', 'children': [], 'value': "'scp'"},{'id': '97', 'type': 'block', 'children': ['98', '108', '121', '130', '143', '176']},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '103']},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '102', 'type': 'identifier', 'children': [], 'value': '_scp_session'},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'paramiko'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'SSHClient'},{'id': '107', 'type': 'argument_list', 'children': []},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'assignment', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '111', 'type': 'call', 'children': ['112', '119']},{'id': '112', 'type': 'attribute', 'children': ['113', '118']},{'id': '113', 'type': 'attribute', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'Logger'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'getLogger'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'string', 'children': [], 'value': "'paramiko.transport'"},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'call', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'setLevel'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'CRITICAL'},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '137']},{'id': '132', 'type': 'attribute', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '135', 'type': 'identifier', 'children': [], 'value': '_scp_session'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'set_missing_host_key_policy'},{'id': '137', 'type': 'argument_list', 'children': ['138']},{'id': '138', 'type': 'call', 'children': ['139', '142']},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'paramiko'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'AutoAddPolicy'},{'id': '142', 'type': 'argument_list', 'children': []},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'call', 'children': ['145', '150']},{'id': '145', 'type': 'attribute', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '148', 'type': 'identifier', 'children': [], 'value': '_scp_session'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '150', 'type': 'argument_list', 'children': ['151', '156', '161', '166', '171']},{'id': '151', 'type': 'keyword_argument', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'hostname'},{'id': '153', 'type': 'attribute', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '156', 'type': 'keyword_argument', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '161', 'type': 'keyword_argument', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'password'},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'password'},{'id': '166', 'type': 'keyword_argument', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '168', 'type': 'attribute', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '171', 'type': 'keyword_argument', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'timeout'},{'id': '173', 'type': 'attribute', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'connect_timeout'},{'id': '176', 'type': 'expression_statement', 'children': ['177']},{'id': '177', 'type': 'assignment', 'children': ['178', '181']},{'id': '178', 'type': 'attribute', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '180', 'type': 'identifier', 'children': [], 'value': '_scp'},{'id': '181', 'type': 'call', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'SCPClient'},{'id': '183', 'type': 'argument_list', 'children': ['184']},{'id': '184', 'type': 'call', 'children': ['185', '190']},{'id': '185', 'type': 'attribute', 'children': ['186', '189']},{'id': '186', 'type': 'attribute', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '188', 'type': 'identifier', 'children': [], 'value': '_scp_session'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'get_transport'},{'id': '190', 'type': 'argument_list', 'children': []},{'id': '191', 'type': 'elif_clause', 'children': ['192', '197']},{'id': '192', 'type': 'comparison_operator', 'children': ['193', '196'], 'value': '=='},{'id': '193', 'type': 'attribute', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '196', 'type': 'string', 'children': [], 'value': '"ncclient"'},{'id': '197', 'type': 'block', 'children': ['198']},{'id': '198', 'type': 'expression_statement', 'children': ['199']},{'id': '199', 'type': 'assignment', 'children': ['200', '203']},{'id': '200', 'type': 'attribute', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '202', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '203', 'type': 'call', 'children': ['204', '207']},{'id': '204', 'type': 'attribute', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '207', 'type': 'argument_list', 'children': ['208', '213', '218', '223', '228', '233', '239']},{'id': '208', 'type': 'keyword_argument', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '210', 'type': 'attribute', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '213', 'type': 'keyword_argument', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '215', 'type': 'attribute', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '218', 'type': 'keyword_argument', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '220', 'type': 'attribute', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '223', 'type': 'keyword_argument', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'password'},{'id': '225', 'type': 'attribute', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'password'},{'id': '228', 'type': 'keyword_argument', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'timeout'},{'id': '230', 'type': 'attribute', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'connect_timeout'},{'id': '233', 'type': 'keyword_argument', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'device_params'},{'id': '235', 'type': 'dictionary', 'children': ['236']},{'id': '236', 'type': 'pair', 'children': ['237', '238']},{'id': '237', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '238', 'type': 'string', 'children': [], 'value': "'junos'"},{'id': '239', 'type': 'keyword_argument', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'hostkey_verify'},{'id': '241', 'type': 'False', 'children': []},{'id': '242', 'type': 'elif_clause', 'children': ['243', '248']},{'id': '243', 'type': 'comparison_operator', 'children': ['244', '247'], 'value': '=='},{'id': '244', 'type': 'attribute', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '247', 'type': 'string', 'children': [], 'value': "'shell'"},{'id': '248', 'type': 'block', 'children': ['249', '273', '316']},{'id': '249', 'type': 'if_statement', 'children': ['250', '254']},{'id': '250', 'type': 'not_operator', 'children': ['251']},{'id': '251', 'type': 'attribute', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '253', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '254', 'type': 'block', 'children': ['255', '261', '267']},{'id': '255', 'type': 'expression_statement', 'children': ['256']},{'id': '256', 'type': 'assignment', 'children': ['257', '260']},{'id': '257', 'type': 'attribute', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '260', 'type': 'string', 'children': [], 'value': "'paramiko'"},{'id': '261', 'type': 'expression_statement', 'children': ['262']},{'id': '262', 'type': 'call', 'children': ['263', '266']},{'id': '263', 'type': 'attribute', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '266', 'type': 'argument_list', 'children': []},{'id': '267', 'type': 'expression_statement', 'children': ['268']},{'id': '268', 'type': 'assignment', 'children': ['269', '272']},{'id': '269', 'type': 'attribute', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '272', 'type': 'string', 'children': [], 'value': "'shell'"},{'id': '273', 'type': 'if_statement', 'children': ['274', '278']},{'id': '274', 'type': 'not_operator', 'children': ['275']},{'id': '275', 'type': 'attribute', 'children': ['276', '277']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '277', 'type': 'identifier', 'children': [], 'value': '_shell'},{'id': '278', 'type': 'block', 'children': ['279', '291', '298']},{'id': '279', 'type': 'expression_statement', 'children': ['280']},{'id': '280', 'type': 'assignment', 'children': ['281', '284']},{'id': '281', 'type': 'attribute', 'children': ['282', '283']},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '283', 'type': 'identifier', 'children': [], 'value': '_shell'},{'id': '284', 'type': 'call', 'children': ['285', '290']},{'id': '285', 'type': 'attribute', 'children': ['286', '289']},{'id': '286', 'type': 'attribute', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '288', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'invoke_shell'},{'id': '290', 'type': 'argument_list', 'children': []},{'id': '291', 'type': 'expression_statement', 'children': ['292']},{'id': '292', 'type': 'call', 'children': ['293', '296']},{'id': '293', 'type': 'attribute', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'sleep'},{'id': '296', 'type': 'argument_list', 'children': ['297']},{'id': '297', 'type': 'integer', 'children': [], 'value': '2'},{'id': '298', 'type': 'if_statement', 'children': ['299', '309']},{'id': '299', 'type': 'boolean_operator', 'children': ['300', '305'], 'value': 'and'},{'id': '300', 'type': 'comparison_operator', 'children': ['301', '304'], 'value': '!='},{'id': '301', 'type': 'attribute', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '304', 'type': 'string', 'children': [], 'value': "'root'"},{'id': '305', 'type': 'not_operator', 'children': ['306']},{'id': '306', 'type': 'attribute', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '308', 'type': 'identifier', 'children': [], 'value': '_in_cli'},{'id': '309', 'type': 'block', 'children': ['310']},{'id': '310', 'type': 'expression_statement', 'children': ['311']},{'id': '311', 'type': 'assignment', 'children': ['312', '315']},{'id': '312', 'type': 'attribute', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '314', 'type': 'identifier', 'children': [], 'value': '_in_cli'},{'id': '315', 'type': 'True', 'children': []},{'id': '316', 'type': 'if_statement', 'children': ['317', '323']},{'id': '317', 'type': 'not_operator', 'children': ['318']},{'id': '318', 'type': 'call', 'children': ['319', '322']},{'id': '319', 'type': 'attribute', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'cli_to_shell'},{'id': '322', 'type': 'argument_list', 'children': []},{'id': '323', 'type': 'block', 'children': ['324']},{'id': '324', 'type': 'expression_statement', 'children': ['325']},{'id': '325', 'type': 'call', 'children': ['326', '331']},{'id': '326', 'type': 'attribute', 'children': ['327', '330']},{'id': '327', 'type': 'attribute', 'children': ['328', '329']},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '329', 'type': 'identifier', 'children': [], 'value': '_shell'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'recv'},{'id': '331', 'type': 'argument_list', 'children': ['332']},{'id': '332', 'type': 'integer', 'children': [], 'value': '9999'},{'id': '333', 'type': 'elif_clause', 'children': ['334', '339']},{'id': '334', 'type': 'comparison_operator', 'children': ['335', '338'], 'value': '=='},{'id': '335', 'type': 'attribute', 'children': ['336', '337']},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '338', 'type': 'string', 'children': [], 'value': "'root'"},{'id': '339', 'type': 'block', 'children': ['340', '365']},{'id': '340', 'type': 'if_statement', 'children': ['341', '345']},{'id': '341', 'type': 'not_operator', 'children': ['342']},{'id': '342', 'type': 'attribute', 'children': ['343', '344']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '344', 'type': 'identifier', 'children': [], 'value': '_shell'},{'id': '345', 'type': 'block', 'children': ['346', '358']},{'id': '346', 'type': 'expression_statement', 'children': ['347']},{'id': '347', 'type': 'assignment', 'children': ['348', '351']},{'id': '348', 'type': 'attribute', 'children': ['349', '350']},{'id': '349', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '350', 'type': 'identifier', 'children': [], 'value': '_shell'},{'id': '351', 'type': 'call', 'children': ['352', '357']},{'id': '352', 'type': 'attribute', 'children': ['353', '356']},{'id': '353', 'type': 'attribute', 'children': ['354', '355']},{'id': '354', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '355', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '356', 'type': 'identifier', 'children': [], 'value': 'invoke_shell'},{'id': '357', 'type': 'argument_list', 'children': []},{'id': '358', 'type': 'expression_statement', 'children': ['359']},{'id': '359', 'type': 'call', 'children': ['360', '363']},{'id': '360', 'type': 'attribute', 'children': ['361', '362']},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '362', 'type': 'identifier', 'children': [], 'value': 'sleep'},{'id': '363', 'type': 'argument_list', 'children': ['364']},{'id': '364', 'type': 'integer', 'children': [], 'value': '2'},{'id': '365', 'type': 'if_statement', 'children': ['366', '372']},{'id': '366', 'type': 'not_operator', 'children': ['367']},{'id': '367', 'type': 'call', 'children': ['368', '371']},{'id': '368', 'type': 'attribute', 'children': ['369', '370']},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '370', 'type': 'identifier', 'children': [], 'value': 'shell_to_cli'},{'id': '371', 'type': 'argument_list', 'children': []},{'id': '372', 'type': 'block', 'children': ['373']},{'id': '373', 'type': 'expression_statement', 'children': ['374']},{'id': '374', 'type': 'call', 'children': ['375', '380']},{'id': '375', 'type': 'attribute', 'children': ['376', '379']},{'id': '376', 'type': 'attribute', 'children': ['377', '378']},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '378', 'type': 'identifier', 'children': [], 'value': '_shell'},{'id': '379', 'type': 'identifier', 'children': [], 'value': 'recv'},{'id': '380', 'type': 'argument_list', 'children': ['381']},{'id': '381', 'type': 'integer', 'children': [], 'value': '9999'},{'id': '382', 'type': 'expression_statement', 'children': ['383']},{'id': '383', 'type': 'call', 'children': ['384', '387']},{'id': '384', 'type': 'attribute', 'children': ['385', '386']},{'id': '385', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '386', 'type': 'identifier', 'children': [], 'value': '_update_timeout'},{'id': '387', 'type': 'argument_list', 'children': ['388']},{'id': '388', 'type': 'attribute', 'children': ['389', '390']},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '390', 'type': 'identifier', 'children': [], 'value': 'session_timeout'} | def connect(self):
if self.conn_type == 'paramiko':
self._session = paramiko.SSHClient()
logger = logging.Logger.manager.getLogger('paramiko.transport')
logger.setLevel(logging.CRITICAL)
self._session.set_missing_host_key_policy(
paramiko.AutoAddPolicy())
self._session.connect(hostname=self.host,
username=self.username,
password=self.password,
port=self.port,
timeout=self.connect_timeout)
if self.conn_type == 'scp':
self._scp_session = paramiko.SSHClient()
logger = logging.Logger.manager.getLogger('paramiko.transport')
logger.setLevel(logging.CRITICAL)
self._scp_session.set_missing_host_key_policy(
paramiko.AutoAddPolicy())
self._scp_session.connect(hostname=self.host,
username=self.username,
password=self.password,
port=self.port,
timeout=self.connect_timeout)
self._scp = SCPClient(self._scp_session.get_transport())
elif self.conn_type == "ncclient":
self._session = manager.connect(
host=self.host,
port=self.port,
username=self.username,
password=self.password,
timeout=self.connect_timeout,
device_params={'name': 'junos'},
hostkey_verify=False
)
elif self.conn_type == 'shell':
if not self._session:
self.conn_type = 'paramiko'
self.connect()
self.conn_type = 'shell'
if not self._shell:
self._shell = self._session.invoke_shell()
time.sleep(2)
if self.username != 'root' and not self._in_cli:
self._in_cli = True
if not self.cli_to_shell():
self._shell.recv(9999)
elif self.conn_type == 'root':
if not self._shell:
self._shell = self._session.invoke_shell()
time.sleep(2)
if not self.shell_to_cli():
self._shell.recv(9999)
self._update_timeout(self.session_timeout) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'script'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'inbox'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '6', 'type': 'block', 'children': ['7', '13', '45', '49', '60', '66', '101', '126', '132', '136', '289', '311', '334']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'script_name'},{'id': '10', 'type': 'subscript', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '12', 'type': 'string', 'children': [], 'value': '"id"'},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'assignment', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'script_id'},{'id': '16', 'type': 'subscript', 'children': ['17', '41']},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'hash'},{'id': '25', 'type': 'argument_list', 'children': ['26']},{'id': '26', 'type': 'binary_operator', 'children': ['27', '31'], 'value': '+'},{'id': '27', 'type': 'tuple', 'children': ['28']},{'id': '28', 'type': 'subscript', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '30', 'type': 'string', 'children': [], 'value': '"id"'},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '40']},{'id': '35', 'type': 'attribute', 'children': ['36', '39']},{'id': '36', 'type': 'subscript', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'inbox'},{'id': '38', 'type': 'integer', 'children': [], 'value': '0'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '40', 'type': 'argument_list', 'children': []},{'id': '41', 'type': 'slice', 'children': ['42', '43', '44']},{'id': '42', 'type': 'integer', 'children': [], 'value': '0'},{'id': '43', 'type': 'colon', 'children': []},{'id': '44', 'type': 'integer', 'children': [], 'value': '8'},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '48', 'type': 'dictionary', 'children': []},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '54']},{'id': '51', 'type': 'subscript', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '53', 'type': 'string', 'children': [], 'value': '"params"'},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'subscript', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '59', 'type': 'string', 'children': [], 'value': '"params"'},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '65']},{'id': '62', 'type': 'subscript', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '64', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '65', 'type': 'dictionary', 'children': []},{'id': '66', 'type': 'for_statement', 'children': ['67', '68', '71']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'in_port'},{'id': '68', 'type': 'subscript', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '70', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '71', 'type': 'block', 'children': ['72']},{'id': '72', 'type': 'for_statement', 'children': ['73', '74', '75']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'inin_ports'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'inbox'},{'id': '75', 'type': 'block', 'children': ['76', '86']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'in_path'},{'id': '79', 'type': 'call', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'inin_ports'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '83', 'type': 'argument_list', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'in_port'},{'id': '85', 'type': 'None', 'children': []},{'id': '86', 'type': 'if_statement', 'children': ['87', '91']},{'id': '87', 'type': '()', 'children': ['88']},{'id': '88', 'type': 'comparison_operator', 'children': ['89', '90'], 'value': 'is'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'in_path'},{'id': '90', 'type': 'None', 'children': []},{'id': '91', 'type': 'block', 'children': ['92', '100']},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'assignment', 'children': ['94', '99']},{'id': '94', 'type': 'subscript', 'children': ['95', '98']},{'id': '95', 'type': 'subscript', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '97', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'in_port'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'in_path'},{'id': '100', 'type': 'break_statement', 'children': []},{'id': '101', 'type': 'if_statement', 'children': ['102', '115']},{'id': '102', 'type': 'comparison_operator', 'children': ['103', '109'], 'value': '<'},{'id': '103', 'type': 'call', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'subscript', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '108', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '109', 'type': 'call', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '111', 'type': 'argument_list', 'children': ['112']},{'id': '112', 'type': 'subscript', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '114', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'raise_statement', 'children': ['117']},{'id': '117', 'type': 'call', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'binary_operator', 'children': ['121', '122'], 'value': '%'},{'id': '121', 'type': 'string', 'children': [], 'value': '"not all in_ports connected, got: %s"'},{'id': '122', 'type': 'tuple', 'children': ['123']},{'id': '123', 'type': 'subscript', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '125', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '131']},{'id': '128', 'type': 'subscript', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '130', 'type': 'string', 'children': [], 'value': '"out"'},{'id': '131', 'type': 'dictionary', 'children': []},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '135', 'type': 'dictionary', 'children': []},{'id': '136', 'type': 'for_statement', 'children': ['137', '142', '148']},{'id': '137', 'type': 'pattern_list', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '139', 'type': 'tuple_pattern', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'out_port'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'out_ext'},{'id': '142', 'type': 'call', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'subscript', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '147', 'type': 'string', 'children': [], 'value': '"out"'},{'id': '148', 'type': 'block', 'children': ['149', '242', '275', '283']},{'id': '149', 'type': 'if_statement', 'children': ['150', '165', '201']},{'id': '150', 'type': 'comparison_operator', 'children': ['151', '154'], 'value': '=='},{'id': '151', 'type': 'subscript', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '153', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '154', 'type': 'call', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '156', 'type': 'generator_expression', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'out_port_'},{'id': '158', 'type': 'for_in_clause', 'children': ['159', '162']},{'id': '159', 'type': 'pattern_list', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'out_port_'},{'id': '161', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '162', 'type': 'subscript', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '164', 'type': 'string', 'children': [], 'value': '"out"'},{'id': '165', 'type': 'block', 'children': ['166', '195']},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'pfx'},{'id': '169', 'type': 'binary_operator', 'children': ['170', '194'], 'value': '+'},{'id': '170', 'type': 'subscript', 'children': ['171', '193']},{'id': '171', 'type': 'call', 'children': ['172', '191']},{'id': '172', 'type': 'attribute', 'children': ['173', '190']},{'id': '173', 'type': 'subscript', 'children': ['174', '188']},{'id': '174', 'type': 'call', 'children': ['175', '186']},{'id': '175', 'type': 'attribute', 'children': ['176', '185']},{'id': '176', 'type': 'subscript', 'children': ['177', '180']},{'id': '177', 'type': 'subscript', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '179', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '180', 'type': 'subscript', 'children': ['181', '184']},{'id': '181', 'type': 'subscript', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '183', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '186', 'type': 'argument_list', 'children': ['187']},{'id': '187', 'type': 'string', 'children': [], 'value': '"/"'},{'id': '188', 'type': 'unary_operator', 'children': ['189'], 'value': '-'},{'id': '189', 'type': 'integer', 'children': [], 'value': '1'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '191', 'type': 'argument_list', 'children': ['192']},{'id': '192', 'type': 'string', 'children': [], 'value': '"."'},{'id': '193', 'type': 'integer', 'children': [], 'value': '0'},{'id': '194', 'type': 'string', 'children': [], 'value': '"_"'},{'id': '195', 'type': 'expression_statement', 'children': ['196']},{'id': '196', 'type': 'assignment', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '198', 'type': 'subscript', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '200', 'type': 'string', 'children': [], 'value': '"id"'},{'id': '201', 'type': 'else_clause', 'children': ['202']},{'id': '202', 'type': 'block', 'children': ['203', '232']},{'id': '203', 'type': 'expression_statement', 'children': ['204']},{'id': '204', 'type': 'assignment', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'pfx'},{'id': '206', 'type': 'binary_operator', 'children': ['207', '231'], 'value': '+'},{'id': '207', 'type': 'subscript', 'children': ['208', '230']},{'id': '208', 'type': 'call', 'children': ['209', '228']},{'id': '209', 'type': 'attribute', 'children': ['210', '227']},{'id': '210', 'type': 'subscript', 'children': ['211', '225']},{'id': '211', 'type': 'call', 'children': ['212', '223']},{'id': '212', 'type': 'attribute', 'children': ['213', '222']},{'id': '213', 'type': 'subscript', 'children': ['214', '217']},{'id': '214', 'type': 'subscript', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '216', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '217', 'type': 'subscript', 'children': ['218', '221']},{'id': '218', 'type': 'subscript', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '220', 'type': 'string', 'children': [], 'value': '"in"'},{'id': '221', 'type': 'integer', 'children': [], 'value': '0'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '223', 'type': 'argument_list', 'children': ['224']},{'id': '224', 'type': 'string', 'children': [], 'value': '"/"'},{'id': '225', 'type': 'unary_operator', 'children': ['226'], 'value': '-'},{'id': '226', 'type': 'integer', 'children': [], 'value': '1'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '228', 'type': 'argument_list', 'children': ['229']},{'id': '229', 'type': 'string', 'children': [], 'value': '"."'},{'id': '230', 'type': 'integer', 'children': [], 'value': '0'},{'id': '231', 'type': 'string', 'children': [], 'value': '"_"'},{'id': '232', 'type': 'expression_statement', 'children': ['233']},{'id': '233', 'type': 'assignment', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '235', 'type': 'binary_operator', 'children': ['236', '241'], 'value': '+'},{'id': '236', 'type': 'binary_operator', 'children': ['237', '240'], 'value': '+'},{'id': '237', 'type': 'subscript', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '239', 'type': 'string', 'children': [], 'value': '"id"'},{'id': '240', 'type': 'string', 'children': [], 'value': '"-"'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'out_port'},{'id': '242', 'type': 'if_statement', 'children': ['243', '244', '261']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'out_ext'},{'id': '244', 'type': 'block', 'children': ['245']},{'id': '245', 'type': 'expression_statement', 'children': ['246']},{'id': '246', 'type': 'assignment', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'out_path'},{'id': '248', 'type': 'binary_operator', 'children': ['249', '260'], 'value': '+'},{'id': '249', 'type': 'binary_operator', 'children': ['250', '259'], 'value': '+'},{'id': '250', 'type': 'binary_operator', 'children': ['251', '258'], 'value': '+'},{'id': '251', 'type': 'binary_operator', 'children': ['252', '257'], 'value': '+'},{'id': '252', 'type': 'binary_operator', 'children': ['253', '256'], 'value': '+'},{'id': '253', 'type': 'subscript', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '255', 'type': 'string', 'children': [], 'value': '"dir"'},{'id': '256', 'type': 'string', 'children': [], 'value': '"/"'},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'pfx'},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '259', 'type': 'string', 'children': [], 'value': '"."'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'out_ext'},{'id': '261', 'type': 'else_clause', 'children': ['262']},{'id': '262', 'type': 'block', 'children': ['263']},{'id': '263', 'type': 'expression_statement', 'children': ['264']},{'id': '264', 'type': 'assignment', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'out_path'},{'id': '266', 'type': 'binary_operator', 'children': ['267', '274'], 'value': '+'},{'id': '267', 'type': 'binary_operator', 'children': ['268', '273'], 'value': '+'},{'id': '268', 'type': 'binary_operator', 'children': ['269', '272'], 'value': '+'},{'id': '269', 'type': 'subscript', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '271', 'type': 'string', 'children': [], 'value': '"dir"'},{'id': '272', 'type': 'string', 'children': [], 'value': '"/"'},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'pfx'},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '275', 'type': 'expression_statement', 'children': ['276']},{'id': '276', 'type': 'assignment', 'children': ['277', '282']},{'id': '277', 'type': 'subscript', 'children': ['278', '281']},{'id': '278', 'type': 'subscript', 'children': ['279', '280']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '280', 'type': 'string', 'children': [], 'value': '"out"'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'out_port'},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'out_path'},{'id': '283', 'type': 'expression_statement', 'children': ['284']},{'id': '284', 'type': 'assignment', 'children': ['285', '288']},{'id': '285', 'type': 'subscript', 'children': ['286', '287']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'out_port'},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'out_path'},{'id': '289', 'type': 'expression_statement', 'children': ['290']},{'id': '290', 'type': 'assignment', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '292', 'type': 'call', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': '_eval_script'},{'id': '294', 'type': 'argument_list', 'children': ['295', '298', '301', '304', '307', '310']},{'id': '295', 'type': 'subscript', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '297', 'type': 'string', 'children': [], 'value': '"evaluator"'},{'id': '298', 'type': 'subscript', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '300', 'type': 'string', 'children': [], 'value': '"preamble"'},{'id': '301', 'type': 'subscript', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '303', 'type': 'string', 'children': [], 'value': '"dir"'},{'id': '304', 'type': 'subscript', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '306', 'type': 'string', 'children': [], 'value': '"executable"'},{'id': '307', 'type': 'subscript', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '309', 'type': 'string', 'children': [], 'value': '"script"'},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '311', 'type': 'if_statement', 'children': ['312', '317']},{'id': '312', 'type': 'comparison_operator', 'children': ['313', '316'], 'value': '!='},{'id': '313', 'type': 'subscript', 'children': ['314', '315']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '315', 'type': 'integer', 'children': [], 'value': '0'},{'id': '316', 'type': 'integer', 'children': [], 'value': '0'},{'id': '317', 'type': 'block', 'children': ['318']},{'id': '318', 'type': 'raise_statement', 'children': ['319']},{'id': '319', 'type': 'call', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '321', 'type': 'argument_list', 'children': ['322', '325', '328', '331']},{'id': '322', 'type': 'subscript', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '324', 'type': 'integer', 'children': [], 'value': '0'},{'id': '325', 'type': 'subscript', 'children': ['326', '327']},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '327', 'type': 'string', 'children': [], 'value': '"script"'},{'id': '328', 'type': 'subscript', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '330', 'type': 'integer', 'children': [], 'value': '1'},{'id': '331', 'type': 'subscript', 'children': ['332', '333']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '333', 'type': 'integer', 'children': [], 'value': '2'},{'id': '334', 'type': 'return_statement', 'children': ['335']},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'out'} | def script(inbox, cfg):
script_name = cfg["id"]
script_id = str(abs(hash((cfg["id"],) + tuple(inbox[0].values()))))[0:8]
args = {}
args["params"] = dict(cfg["params"])
args["in"] = {}
for in_port in cfg["in"]:
for inin_ports in inbox:
in_path = inin_ports.get(in_port, None)
if (in_path is not None):
args["in"][in_port] = in_path
break
if len(args["in"]) < len(cfg["in"]):
raise Exception("not all in_ports connected, got: %s" % (args["in"],))
args["out"] = {}
out = {}
for i, (out_port, out_ext) in enumerate(cfg["out"]):
if cfg["in"] == tuple(out_port_ for out_port_, _ in cfg["out"]):
pfx = args["in"][cfg["in"][i]].split("/")[-1].split(".")[0] + "_"
base = cfg["id"]
else:
pfx = args["in"][cfg["in"][0]].split("/")[-1].split(".")[0] + "_"
base = cfg["id"] + "-" + out_port
if out_ext:
out_path = cfg["dir"] + "/" + pfx + base + "." + out_ext
else:
out_path = cfg["dir"] + "/" + pfx + base
args["out"][out_port] = out_path
out[out_port] = out_path
ret = _eval_script(cfg["evaluator"], cfg["preamble"], cfg["dir"], cfg["executable"], cfg["script"], args)
if ret[0] != 0:
raise Exception(ret[0], cfg["script"], ret[1], ret[2])
return out |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_create_update_tracking_related_event'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '5', 'type': 'block', 'children': ['6', '10', '100']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'events'},{'id': '9', 'type': 'dictionary', 'children': []},{'id': '10', 'type': 'for_statement', 'children': ['11', '14', '21']},{'id': '11', 'type': 'pattern_list', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'related_fields'},{'id': '14', 'type': 'call', 'children': ['15', '20']},{'id': '15', 'type': 'attribute', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '18', 'type': 'identifier', 'children': [], 'value': '_tracked_related_fields'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '20', 'type': 'argument_list', 'children': []},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'if_statement', 'children': ['23', '36']},{'id': '23', 'type': 'not_operator', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '26', 'type': 'argument_list', 'children': ['27', '35']},{'id': '27', 'type': 'call', 'children': ['28', '33']},{'id': '28', 'type': 'attribute', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '31', 'type': 'identifier', 'children': [], 'value': '_meta'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'get_field'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'ManyToManyField'},{'id': '36', 'type': 'block', 'children': ['37', '74']},{'id': '37', 'type': 'if_statement', 'children': ['38', '50', '64']},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '40', 'type': 'argument_list', 'children': ['41', '49']},{'id': '41', 'type': 'call', 'children': ['42', '47']},{'id': '42', 'type': 'attribute', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '45', 'type': 'identifier', 'children': [], 'value': '_meta'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'get_field'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'ForeignKey'},{'id': '50', 'type': 'block', 'children': ['51']},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '56', 'type': 'argument_list', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '58', 'type': 'call', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'string', 'children': [], 'value': "'{0}_id'"},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '64', 'type': 'else_clause', 'children': ['65']},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '71', 'type': 'argument_list', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '74', 'type': 'if_statement', 'children': ['75', '82']},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '81'], 'value': '!='},{'id': '76', 'type': 'subscript', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '79', 'type': 'identifier', 'children': [], 'value': '_original_fields'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '82', 'type': 'block', 'children': ['83']},{'id': '83', 'type': 'for_statement', 'children': ['84', '85', '86']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'related_field'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'related_fields'},{'id': '86', 'type': 'block', 'children': ['87']},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'call', 'children': ['89', '98']},{'id': '89', 'type': 'attribute', 'children': ['90', '97']},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'events'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'setdefault'},{'id': '94', 'type': 'argument_list', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'related_field'},{'id': '96', 'type': 'list', 'children': [], 'value': '[]'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '100', 'type': 'for_statement', 'children': ['101', '104', '109']},{'id': '101', 'type': 'pattern_list', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'related_field'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '104', 'type': 'call', 'children': ['105', '108']},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'events'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '108', 'type': 'argument_list', 'children': []},{'id': '109', 'type': 'block', 'children': ['110', '126', '148']},{'id': '110', 'type': 'try_statement', 'children': ['111', '122']},{'id': '111', 'type': 'block', 'children': ['112']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'related_instances'},{'id': '115', 'type': 'call', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '117', 'type': 'argument_list', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '119', 'type': 'subscript', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'related_field'},{'id': '121', 'type': 'integer', 'children': [], 'value': '1'},{'id': '122', 'type': 'except_clause', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'ObjectDoesNotExist'},{'id': '124', 'type': 'block', 'children': ['125']},{'id': '125', 'type': 'continue_statement', 'children': []},{'id': '126', 'type': 'if_statement', 'children': ['127', '132', '141']},{'id': '127', 'type': 'call', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '129', 'type': 'argument_list', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'related_instances'},{'id': '131', 'type': 'string', 'children': [], 'value': "'all'"},{'id': '132', 'type': 'block', 'children': ['133']},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'related_instances'},{'id': '136', 'type': 'call', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'related_instances'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '140', 'type': 'argument_list', 'children': []},{'id': '141', 'type': 'else_clause', 'children': ['142']},{'id': '142', 'type': 'block', 'children': ['143']},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'assignment', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'related_instances'},{'id': '146', 'type': 'list', 'children': ['147'], 'value': '[related_instances]'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'related_instances'},{'id': '148', 'type': 'for_statement', 'children': ['149', '150', '151']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'related_instance'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'related_instances'},{'id': '151', 'type': 'block', 'children': ['152', '160']},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'assignment', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '155', 'type': 'call', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': '_create_event'},{'id': '157', 'type': 'argument_list', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'related_instance'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'UPDATE'},{'id': '160', 'type': 'for_statement', 'children': ['161', '162', '163']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '163', 'type': 'block', 'children': ['164', '176']},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'fieldname'},{'id': '167', 'type': 'call', 'children': ['168', '171']},{'id': '168', 'type': 'attribute', 'children': ['169', '170']},{'id': '169', 'type': 'string', 'children': [], 'value': "'{0}__{1}'"},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '171', 'type': 'argument_list', 'children': ['172', '175']},{'id': '172', 'type': 'subscript', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'related_field'},{'id': '174', 'type': 'integer', 'children': [], 'value': '0'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '176', 'type': 'expression_statement', 'children': ['177']},{'id': '177', 'type': 'call', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': '_create_tracked_field'},{'id': '179', 'type': 'argument_list', 'children': ['180', '181', '182', '183']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '183', 'type': 'keyword_argument', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'fieldname'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'fieldname'} | def _create_update_tracking_related_event(instance):
events = {}
for field, related_fields in instance._tracked_related_fields.items():
if not isinstance(instance._meta.get_field(field), ManyToManyField):
if isinstance(instance._meta.get_field(field), ForeignKey):
value = getattr(instance, '{0}_id'.format(field))
else:
value = getattr(instance, field)
if instance._original_fields[field] != value:
for related_field in related_fields:
events.setdefault(related_field, []).append(field)
for related_field, fields in events.items():
try:
related_instances = getattr(instance, related_field[1])
except ObjectDoesNotExist:
continue
if hasattr(related_instances, 'all'):
related_instances = related_instances.all()
else:
related_instances = [related_instances]
for related_instance in related_instances:
event = _create_event(related_instance, UPDATE)
for field in fields:
fieldname = '{0}__{1}'.format(related_field[0], field)
_create_tracked_field(
event, instance, field, fieldname=fieldname
) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'list'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'page'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'block', 'children': ['21', '35', '53', '73']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'schema'},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'PackageSchema'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'keyword_argument', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'exclude'},{'id': '29', 'type': 'tuple', 'children': ['30', '31', '32', '33', '34']},{'id': '30', 'type': 'string', 'children': [], 'value': "'testlist'"},{'id': '31', 'type': 'string', 'children': [], 'value': "'extra_cli_args'"},{'id': '32', 'type': 'string', 'children': [], 'value': "'agent_id'"},{'id': '33', 'type': 'string', 'children': [], 'value': "'options'"},{'id': '34', 'type': 'string', 'children': [], 'value': "'note'"},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '38', 'type': 'call', 'children': ['39', '44']},{'id': '39', 'type': 'attribute', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '44', 'type': 'argument_list', 'children': ['45', '48', '49', '50', '51', '52']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'page'},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '58']},{'id': '55', 'type': 'pattern_list', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'ps'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '58', 'type': 'call', 'children': ['59', '64']},{'id': '59', 'type': 'attribute', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '64', 'type': 'argument_list', 'children': ['65', '66', '67', '70']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'schema'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'many'},{'id': '69', 'type': 'True', 'children': []},{'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'links'},{'id': '72', 'type': 'True', 'children': []},{'id': '73', 'type': 'return_statement', 'children': ['74']},{'id': '74', 'type': 'call', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'Page'},{'id': '76', 'type': 'argument_list', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'ps'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'l'} | def list(self, filter=None, type=None, sort=None, limit=None, page=None):
schema = PackageSchema(exclude=('testlist', 'extra_cli_args', 'agent_id', 'options', 'note'))
resp = self.service.list(self.base, filter, type, sort, limit, page)
ps, l = self.service.decode(schema, resp, many=True, links=True)
return Page(ps, l) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'clean_lines'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '5', 'type': 'block', 'children': ['6', '84']},{'id': '6', 'type': 'if_statement', 'children': ['7', '12', '69', '77']},{'id': '7', 'type': 'call', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '9', 'type': 'argument_list', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'basestring'},{'id': '12', 'type': 'block', 'children': ['13']},{'id': '13', 'type': 'if_statement', 'children': ['14', '20', '29', '51']},{'id': '14', 'type': 'call', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'isfile'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '20', 'type': 'block', 'children': ['21']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '26', 'type': 'argument_list', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '28', 'type': 'string', 'children': [], 'value': "'rb'"},{'id': '29', 'type': 'elif_clause', 'children': ['30', '41']},{'id': '30', 'type': 'comparison_operator', 'children': ['31', '40'], 'value': '>'},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'string', 'children': [], 'value': "','"},{'id': '40', 'type': 'integer', 'children': [], 'value': '1'},{'id': '41', 'type': 'block', 'children': ['42']},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'string', 'children': [], 'value': "','"},{'id': '51', 'type': 'else_clause', 'children': ['52']},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'try_statement', 'children': ['54', '64', '65']},{'id': '54', 'type': 'ERROR', 'children': ['55', '62', '63']},{'id': '55', 'type': 'subscript', 'children': ['56', '61']},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '60', 'type': 'argument_list', 'children': []},{'id': '61', 'type': 'integer', 'children': [], 'value': '0'},{'id': '62', 'type': 'string', 'children': [], 'value': '"\n yield commands.strip() + \'\\n'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'return'},{'id': '64', 'type': 'block', 'children': [], 'value': ''},{'id': '65', 'type': 'except_clause', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'pass_statement', 'children': []},{'id': '69', 'type': 'elif_clause', 'children': ['70', '75']},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '72', 'type': 'argument_list', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'pass_statement', 'children': []},{'id': '77', 'type': 'else_clause', 'children': ['78']},{'id': '78', 'type': 'block', 'children': ['79']},{'id': '79', 'type': 'raise_statement', 'children': ['80']},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'string', 'children': [], 'value': "'clean_lines() accepts a \\'str\\' or \\'list\\''"},{'id': '84', 'type': 'for_statement', 'children': ['85', '86', '87', '105']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '87', 'type': 'ERROR', 'children': ['88', '104']},{'id': '88', 'type': 'ERROR', 'children': ['89']},{'id': '89', 'type': 'block', 'children': ['90', '103']},{'id': '90', 'type': 'if_statement', 'children': ['91', '102']},{'id': '91', 'type': 'comparison_operator', 'children': ['92', '99', '101'], 'value': '!='},{'id': '92', 'type': 'subscript', 'children': ['93', '98']},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '97', 'type': 'argument_list', 'children': []},{'id': '98', 'type': 'integer', 'children': [], 'value': '0'},{'id': '99', 'type': 'ERROR', 'children': ['100']},{'id': '100', 'type': 'string', 'children': [], 'value': '"\n yield cmd.strip() + \'\\n'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '102', 'type': 'block', 'children': [], 'value': ''},{'id': '103', 'type': 'pass_statement', 'children': []},{'id': '104', 'type': 'block', 'children': [], 'value': ''},{'id': '105', 'type': 'block', 'children': [], 'value': ''} | def clean_lines(commands):
if isinstance(commands, basestring):
if path.isfile(commands):
commands = open(commands, 'rb')
elif len(commands.split(',')) > 1:
commands = commands.split(',')
else:
try:
if commands.strip()[0] != "
yield commands.strip() + '\n'
return
except IndexError:
pass
elif isinstance(commands, list):
pass
else:
raise TypeError('clean_lines() accepts a \'str\' or \'list\'')
for cmd in commands:
try:
if cmd.strip()[0] != "
yield cmd.strip() + '\n'
except IndexError:
pass |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'xpath'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'source_xml'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'xpath_expr'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'req_format'},{'id': '8', 'type': 'string', 'children': [], 'value': "'string'"},{'id': '9', 'type': 'block', 'children': ['10', '14', '33', '80', '90', '99', '106', '126']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'tree'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'source_xml'},{'id': '14', 'type': 'if_statement', 'children': ['15', '23']},{'id': '15', 'type': 'not_operator', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '18', 'type': 'argument_list', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'source_xml'},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'Element'},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'tree'},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'objectify'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'fromstring'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'source_xml'},{'id': '33', 'type': 'for_statement', 'children': ['34', '35', '40']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'tree'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'getiterator'},{'id': '39', 'type': 'argument_list', 'children': []},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'if_statement', 'children': ['42', '49']},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '44', 'type': 'argument_list', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'basestring'},{'id': '49', 'type': 'block', 'children': ['50', '61']},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '53', 'type': 'call', 'children': ['54', '59']},{'id': '54', 'type': 'attribute', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'find'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'string', 'children': [], 'value': "'}'"},{'id': '61', 'type': 'if_statement', 'children': ['62', '65']},{'id': '62', 'type': 'comparison_operator', 'children': ['63', '64'], 'value': '>='},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '64', 'type': 'integer', 'children': [], 'value': '0'},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '71', 'type': 'subscript', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '75', 'type': 'slice', 'children': ['76', '79']},{'id': '76', 'type': 'binary_operator', 'children': ['77', '78'], 'value': '+'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '78', 'type': 'integer', 'children': [], 'value': '1'},{'id': '79', 'type': 'colon', 'children': []},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'call', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'objectify'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'deannotate'},{'id': '85', 'type': 'argument_list', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'tree'},{'id': '87', 'type': 'keyword_argument', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'cleanup_namespaces'},{'id': '89', 'type': 'True', 'children': []},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'assignment', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'filtered_list'},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'tree'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'xpath'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'xpath_expr'},{'id': '99', 'type': 'if_statement', 'children': ['100', '103']},{'id': '100', 'type': 'comparison_operator', 'children': ['101', '102'], 'value': '=='},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'req_format'},{'id': '102', 'type': 'string', 'children': [], 'value': "'xml'"},{'id': '103', 'type': 'block', 'children': ['104']},{'id': '104', 'type': 'return_statement', 'children': ['105']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'filtered_list'},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'assignment', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '109', 'type': 'call', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'string', 'children': [], 'value': "''"},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '113', 'type': 'generator_expression', 'children': ['114', '123']},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'etree'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'tostring'},{'id': '118', 'type': 'argument_list', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'element'},{'id': '120', 'type': 'keyword_argument', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'pretty_print'},{'id': '122', 'type': 'True', 'children': []},{'id': '123', 'type': 'for_in_clause', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'element'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'filtered_list'},{'id': '126', 'type': 'return_statement', 'children': ['127']},{'id': '127', 'type': 'conditional_expression', 'children': ['128', '129', '130'], 'value': 'if'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '130', 'type': 'string', 'children': [], 'value': '""'} | def xpath(source_xml, xpath_expr, req_format='string'):
tree = source_xml
if not isinstance(source_xml, ET.Element):
tree = objectify.fromstring(source_xml)
for elem in tree.getiterator():
if isinstance(elem.tag, basestring):
i = elem.tag.find('}')
if i >= 0:
elem.tag = elem.tag[i+1:]
objectify.deannotate(tree, cleanup_namespaces=True)
filtered_list = tree.xpath(xpath_expr)
if req_format == 'xml':
return filtered_list
matches = ''.join(etree.tostring(
element, pretty_print=True) for element in filtered_list)
return matches if matches else "" |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'model_to_dict'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '5', 'type': 'dictionary_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '7', 'type': 'block', 'children': ['8', '10', '17', '21', '53', '242', '257']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'string', 'children': [], 'value': '"Takes a model instance and converts it into a dict."'},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': '_defaults'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '20', 'type': 'dictionary', 'children': []},{'id': '21', 'type': 'if_statement', 'children': ['22', '25']},{'id': '22', 'type': 'subscript', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '24', 'type': 'string', 'children': [], 'value': "'prehook'"},{'id': '25', 'type': 'block', 'children': ['26']},{'id': '26', 'type': 'if_statement', 'children': ['27', '36']},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '29', 'type': 'argument_list', 'children': ['30', '33']},{'id': '30', 'type': 'subscript', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '32', 'type': 'string', 'children': [], 'value': "'prehook'"},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'collections'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'Callable'},{'id': '36', 'type': 'block', 'children': ['37', '46']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'subscript', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '43', 'type': 'string', 'children': [], 'value': "'prehook'"},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '46', 'type': 'if_statement', 'children': ['47', '50']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': 'is'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '49', 'type': 'None', 'children': []},{'id': '50', 'type': 'block', 'children': ['51']},{'id': '51', 'type': 'return_statement', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '53', 'type': 'for_statement', 'children': ['54', '55', '58']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'alias'},{'id': '55', 'type': 'subscript', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '57', 'type': 'string', 'children': [], 'value': "'fields'"},{'id': '58', 'type': 'block', 'children': ['59', '71', '79', '91', '104', '236']},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'accessor'},{'id': '62', 'type': 'call', 'children': ['63', '68']},{'id': '63', 'type': 'attribute', 'children': ['64', '67']},{'id': '64', 'type': 'subscript', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '66', 'type': 'string', 'children': [], 'value': "'aliases'"},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '68', 'type': 'argument_list', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'alias'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'alias'},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'assignment', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '74', 'type': 'binary_operator', 'children': ['75', '78'], 'value': '+'},{'id': '75', 'type': 'subscript', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '77', 'type': 'string', 'children': [], 'value': "'prefix'"},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'alias'},{'id': '79', 'type': 'if_statement', 'children': ['80', '83']},{'id': '80', 'type': 'subscript', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '82', 'type': 'string', 'children': [], 'value': "'camelcase'"},{'id': '83', 'type': 'block', 'children': ['84']},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '87', 'type': 'call', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'convert_to_camel'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '94', 'type': 'call', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'get_field_value'},{'id': '96', 'type': 'argument_list', 'children': ['97', '98', '99']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'accessor'},{'id': '99', 'type': 'keyword_argument', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'allow_missing'},{'id': '101', 'type': 'subscript', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '103', 'type': 'string', 'children': [], 'value': "'allow_missing'"},{'id': '104', 'type': 'if_statement', 'children': ['105', '114']},{'id': '105', 'type': 'call', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '107', 'type': 'argument_list', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '109', 'type': 'tuple', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'models'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'Model'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'QuerySet'},{'id': '114', 'type': 'block', 'children': ['115', '130', '150']},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'assignment', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '118', 'type': 'call', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': '_defaults'},{'id': '120', 'type': 'argument_list', 'children': ['121']},{'id': '121', 'type': 'call', 'children': ['122', '127']},{'id': '122', 'type': 'attribute', 'children': ['123', '126']},{'id': '123', 'type': 'subscript', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '125', 'type': 'string', 'children': [], 'value': "'related'"},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '127', 'type': 'argument_list', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'accessor'},{'id': '129', 'type': 'dictionary', 'children': []},{'id': '130', 'type': 'if_statement', 'children': ['131', '136']},{'id': '131', 'type': 'comparison_operator', 'children': ['132', '133'], 'value': 'in'},{'id': '132', 'type': 'string', 'children': [], 'value': "'%(accessor)s'"},{'id': '133', 'type': 'subscript', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '135', 'type': 'string', 'children': [], 'value': "'prefix'"},{'id': '136', 'type': 'block', 'children': ['137']},{'id': '137', 'type': 'expression_statement', 'children': ['138']},{'id': '138', 'type': 'assignment', 'children': ['139', '142']},{'id': '139', 'type': 'subscript', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '141', 'type': 'string', 'children': [], 'value': "'prefix'"},{'id': '142', 'type': 'binary_operator', 'children': ['143', '146'], 'value': '%'},{'id': '143', 'type': 'subscript', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '145', 'type': 'string', 'children': [], 'value': "'prefix'"},{'id': '146', 'type': 'dictionary', 'children': ['147']},{'id': '147', 'type': 'pair', 'children': ['148', '149']},{'id': '148', 'type': 'string', 'children': [], 'value': "'accessor'"},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'alias'},{'id': '150', 'type': 'if_statement', 'children': ['151', '158', '225']},{'id': '151', 'type': 'call', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '153', 'type': 'argument_list', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'models'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'Model'},{'id': '158', 'type': 'block', 'children': ['159']},{'id': '159', 'type': 'if_statement', 'children': ['160', '178', '197']},{'id': '160', 'type': 'boolean_operator', 'children': ['161', '173', '174'], 'value': 'and'},{'id': '161', 'type': 'boolean_operator', 'children': ['162', '170'], 'value': 'and'},{'id': '162', 'type': 'comparison_operator', 'children': ['163', '169'], 'value': '=='},{'id': '163', 'type': 'call', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '165', 'type': 'argument_list', 'children': ['166']},{'id': '166', 'type': 'subscript', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '168', 'type': 'string', 'children': [], 'value': "'fields'"},{'id': '169', 'type': 'integer', 'children': [], 'value': '1'},{'id': '170', 'type': 'subscript', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '172', 'type': 'string', 'children': [], 'value': "'flat'"},{'id': '173', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '174', 'type': 'not_operator', 'children': ['175']},{'id': '175', 'type': 'subscript', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '177', 'type': 'string', 'children': [], 'value': "'merge'"},{'id': '178', 'type': 'block', 'children': ['179']},{'id': '179', 'type': 'expression_statement', 'children': ['180']},{'id': '180', 'type': 'assignment', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '182', 'type': 'subscript', 'children': ['183', '196']},{'id': '183', 'type': 'call', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '185', 'type': 'argument_list', 'children': ['186']},{'id': '186', 'type': 'call', 'children': ['187', '195']},{'id': '187', 'type': 'attribute', 'children': ['188', '194']},{'id': '188', 'type': 'call', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'serialize'},{'id': '190', 'type': 'argument_list', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '192', 'type': 'dictionary_splat', 'children': ['193']},{'id': '193', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '195', 'type': 'argument_list', 'children': []},{'id': '196', 'type': 'integer', 'children': [], 'value': '0'},{'id': '197', 'type': 'else_clause', 'children': ['198']},{'id': '198', 'type': 'block', 'children': ['199', '208', '221']},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': '_attrs'},{'id': '202', 'type': 'call', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'serialize'},{'id': '204', 'type': 'argument_list', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '206', 'type': 'dictionary_splat', 'children': ['207']},{'id': '207', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '208', 'type': 'if_statement', 'children': ['209', '212']},{'id': '209', 'type': 'subscript', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '211', 'type': 'string', 'children': [], 'value': "'merge'"},{'id': '212', 'type': 'block', 'children': ['213', '220']},{'id': '213', 'type': 'expression_statement', 'children': ['214']},{'id': '214', 'type': 'call', 'children': ['215', '218']},{'id': '215', 'type': 'attribute', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '218', 'type': 'argument_list', 'children': ['219']},{'id': '219', 'type': 'identifier', 'children': [], 'value': '_attrs'},{'id': '220', 'type': 'continue_statement', 'children': []},{'id': '221', 'type': 'expression_statement', 'children': ['222']},{'id': '222', 'type': 'assignment', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '224', 'type': 'identifier', 'children': [], 'value': '_attrs'},{'id': '225', 'type': 'else_clause', 'children': ['226']},{'id': '226', 'type': 'block', 'children': ['227']},{'id': '227', 'type': 'expression_statement', 'children': ['228']},{'id': '228', 'type': 'assignment', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '230', 'type': 'call', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'serialize'},{'id': '232', 'type': 'argument_list', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '234', 'type': 'dictionary_splat', 'children': ['235']},{'id': '235', 'type': 'identifier', 'children': [], 'value': '_options'},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'assignment', 'children': ['238', '241']},{'id': '238', 'type': 'subscript', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '242', 'type': 'if_statement', 'children': ['243', '246']},{'id': '243', 'type': 'subscript', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '245', 'type': 'string', 'children': [], 'value': "'posthook'"},{'id': '246', 'type': 'block', 'children': ['247']},{'id': '247', 'type': 'expression_statement', 'children': ['248']},{'id': '248', 'type': 'assignment', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '250', 'type': 'call', 'children': ['251', '254']},{'id': '251', 'type': 'subscript', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '253', 'type': 'string', 'children': [], 'value': "'posthook'"},{'id': '254', 'type': 'argument_list', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '257', 'type': 'return_statement', 'children': ['258']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'attrs'} | def model_to_dict(instance, **options):
"Takes a model instance and converts it into a dict."
options = _defaults(options)
attrs = {}
if options['prehook']:
if isinstance(options['prehook'], collections.Callable):
instance = options['prehook'](instance)
if instance is None:
return attrs
for alias in options['fields']:
accessor = options['aliases'].get(alias, alias)
key = options['prefix'] + alias
if options['camelcase']:
key = convert_to_camel(key)
value = get_field_value(instance, accessor,
allow_missing=options['allow_missing'])
if isinstance(value, (models.Model, QuerySet)):
_options = _defaults(options['related'].get(accessor, {}))
if '%(accessor)s' in _options['prefix']:
_options['prefix'] = _options['prefix'] % {'accessor': alias}
if isinstance(value, models.Model):
if len(_options['fields']) == 1 and _options['flat'] \
and not _options['merge']:
value = list(serialize(value, **_options).values())[0]
else:
_attrs = serialize(value, **_options)
if _options['merge']:
attrs.update(_attrs)
continue
value = _attrs
else:
value = serialize(value, **_options)
attrs[key] = value
if options['posthook']:
attrs = options['posthook'](instance, attrs)
return attrs |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'list'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '14', 'type': 'None', 'children': []},{'id': '15', 'type': 'default_parameter', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '17', 'type': 'None', 'children': []},{'id': '18', 'type': 'default_parameter', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'page'},{'id': '20', 'type': 'None', 'children': []},{'id': '21', 'type': 'block', 'children': ['22', '32', '53', '73']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'schema'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'AttachmentSchema'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'exclude'},{'id': '30', 'type': '()', 'children': ['31']},{'id': '31', 'type': 'string', 'children': [], 'value': "'path'"},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '35', 'type': 'call', 'children': ['36', '41']},{'id': '36', 'type': 'attribute', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '41', 'type': 'argument_list', 'children': ['42', '48', '49', '50', '51', '52']},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '45', 'type': 'identifier', 'children': [], 'value': '_base'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'page'},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '58']},{'id': '55', 'type': 'pattern_list', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'at'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '58', 'type': 'call', 'children': ['59', '64']},{'id': '59', 'type': 'attribute', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '64', 'type': 'argument_list', 'children': ['65', '66', '67', '70']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'schema'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'many'},{'id': '69', 'type': 'True', 'children': []},{'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'links'},{'id': '72', 'type': 'True', 'children': []},{'id': '73', 'type': 'return_statement', 'children': ['74']},{'id': '74', 'type': 'call', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'Page'},{'id': '76', 'type': 'argument_list', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'at'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'l'} | def list(self, id, filter=None, type=None, sort=None, limit=None, page=None):
schema = AttachmentSchema(exclude=('path'))
resp = self.service.list(self._base(id), filter, type, sort, limit, page)
at, l = self.service.decode(schema, resp, many=True, links=True)
return Page(at, l) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'load_item'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'inbox'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '7', 'type': 'string', 'children': [], 'value': '"string"'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '10', 'type': 'True', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'buffer'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '25', '31', '46', '105', '121', '135', '139', '260', '429', '468']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '21']},{'id': '17', 'type': 'pattern_list', 'children': ['18', '19', '20']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'is_file'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'is_fifo'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'is_socket'},{'id': '21', 'type': 'expression_list', 'children': ['22', '23', '24']},{'id': '22', 'type': 'False', 'children': []},{'id': '23', 'type': 'False', 'children': []},{'id': '24', 'type': 'False', 'children': []},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '28', 'type': 'subscript', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'inbox'},{'id': '30', 'type': 'integer', 'children': [], 'value': '0'},{'id': '31', 'type': 'try_statement', 'children': ['32', '39']},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'file_type'},{'id': '36', 'type': 'subscript', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '38', 'type': 'integer', 'children': [], 'value': '0'},{'id': '39', 'type': 'except_clause', 'children': ['40']},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'raise_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'string', 'children': [], 'value': '"invalid inbox item"'},{'id': '46', 'type': 'if_statement', 'children': ['47', '50', '64', '87', '96']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': '=='},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'file_type'},{'id': '49', 'type': 'string', 'children': [], 'value': '"file"'},{'id': '50', 'type': 'block', 'children': ['51']},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'is_file'},{'id': '54', 'type': 'call', 'children': ['55', '60']},{'id': '55', 'type': 'attribute', 'children': ['56', '59']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'exists'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'subscript', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '63', 'type': 'integer', 'children': [], 'value': '1'},{'id': '64', 'type': 'elif_clause', 'children': ['65', '68']},{'id': '65', 'type': 'comparison_operator', 'children': ['66', '67'], 'value': '=='},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'file_type'},{'id': '67', 'type': 'string', 'children': [], 'value': '"fifo"'},{'id': '68', 'type': 'block', 'children': ['69']},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'is_fifo'},{'id': '72', 'type': 'call', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'stat'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'S_ISFIFO'},{'id': '76', 'type': 'argument_list', 'children': ['77']},{'id': '77', 'type': 'attribute', 'children': ['78', '86']},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'stat'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'subscript', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '85', 'type': 'integer', 'children': [], 'value': '1'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'st_mode'},{'id': '87', 'type': 'elif_clause', 'children': ['88', '91']},{'id': '88', 'type': 'comparison_operator', 'children': ['89', '90'], 'value': '=='},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'file_type'},{'id': '90', 'type': 'string', 'children': [], 'value': '"socket"'},{'id': '91', 'type': 'block', 'children': ['92']},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'assignment', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'is_socket'},{'id': '95', 'type': 'True', 'children': []},{'id': '96', 'type': 'else_clause', 'children': ['97']},{'id': '97', 'type': 'block', 'children': ['98']},{'id': '98', 'type': 'raise_statement', 'children': ['99']},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'binary_operator', 'children': ['103', '104'], 'value': '%'},{'id': '103', 'type': 'string', 'children': [], 'value': '"type: %s not undertood"'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'file_type'},{'id': '105', 'type': 'if_statement', 'children': ['106', '115']},{'id': '106', 'type': 'boolean_operator', 'children': ['107', '111'], 'value': 'and'},{'id': '107', 'type': '()', 'children': ['108']},{'id': '108', 'type': 'boolean_operator', 'children': ['109', '110'], 'value': 'or'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'is_fifo'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'is_socket'},{'id': '111', 'type': '()', 'children': ['112']},{'id': '112', 'type': 'comparison_operator', 'children': ['113', '114'], 'value': '=='},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '114', 'type': 'string', 'children': [], 'value': "'mmap'"},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'raise_statement', 'children': ['117']},{'id': '117', 'type': 'call', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'string', 'children': [], 'value': '"mmap is not supported for FIFOs and sockets"'},{'id': '121', 'type': 'if_statement', 'children': ['122', '129']},{'id': '122', 'type': 'boolean_operator', 'children': ['123', '127'], 'value': 'and'},{'id': '123', 'type': '()', 'children': ['124']},{'id': '124', 'type': 'boolean_operator', 'children': ['125', '126'], 'value': 'or'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'is_fifo'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'is_socket'},{'id': '127', 'type': 'not_operator', 'children': ['128']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '129', 'type': 'block', 'children': ['130']},{'id': '130', 'type': 'raise_statement', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '133', 'type': 'argument_list', 'children': ['134']},{'id': '134', 'type': 'string', 'children': [], 'value': '"FIFOs and sockets have to be removed"'},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'assignment', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '138', 'type': 'integer', 'children': [], 'value': '0'},{'id': '139', 'type': 'if_statement', 'children': ['140', '143', '182', '247']},{'id': '140', 'type': 'boolean_operator', 'children': ['141', '142'], 'value': 'or'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'is_fifo'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'is_file'},{'id': '143', 'type': 'block', 'children': ['144', '159', '173']},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '147', 'type': 'binary_operator', 'children': ['148', '158'], 'value': '-'},{'id': '148', 'type': 'attribute', 'children': ['149', '157']},{'id': '149', 'type': 'call', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'stat'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'subscript', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '156', 'type': 'integer', 'children': [], 'value': '1'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'st_size'},{'id': '158', 'type': 'integer', 'children': [], 'value': '1'},{'id': '159', 'type': 'expression_statement', 'children': ['160']},{'id': '160', 'type': 'assignment', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '162', 'type': 'call', 'children': ['163', '166']},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '166', 'type': 'argument_list', 'children': ['167', '170']},{'id': '167', 'type': 'subscript', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '169', 'type': 'integer', 'children': [], 'value': '1'},{'id': '170', 'type': 'attribute', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'O_RDONLY'},{'id': '173', 'type': 'expression_statement', 'children': ['174']},{'id': '174', 'type': 'assignment', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'BUFFER'},{'id': '176', 'type': '()', 'children': ['177']},{'id': '177', 'type': 'boolean_operator', 'children': ['178', '179'], 'value': 'or'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'buffer'},{'id': '179', 'type': 'subscript', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'PAPY_DEFAULTS'},{'id': '181', 'type': 'string', 'children': [], 'value': "'PIPE_BUF'"},{'id': '182', 'type': 'elif_clause', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'is_socket'},{'id': '184', 'type': 'block', 'children': ['185', '202', '216', '225', '230', '238']},{'id': '185', 'type': 'expression_statement', 'children': ['186']},{'id': '186', 'type': 'assignment', 'children': ['187', '190']},{'id': '187', 'type': 'pattern_list', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '190', 'type': 'expression_list', 'children': ['191', '199']},{'id': '191', 'type': 'call', 'children': ['192', '195']},{'id': '192', 'type': 'attribute', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'gethostbyname'},{'id': '195', 'type': 'argument_list', 'children': ['196']},{'id': '196', 'type': 'subscript', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '198', 'type': 'integer', 'children': [], 'value': '1'},{'id': '199', 'type': 'subscript', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '201', 'type': 'integer', 'children': [], 'value': '2'},{'id': '202', 'type': 'expression_statement', 'children': ['203']},{'id': '203', 'type': 'assignment', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'sock'},{'id': '205', 'type': 'call', 'children': ['206', '209']},{'id': '206', 'type': 'attribute', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '209', 'type': 'argument_list', 'children': ['210', '213']},{'id': '210', 'type': 'attribute', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'AF_INET'},{'id': '213', 'type': 'attribute', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'SOCK_STREAM'},{'id': '216', 'type': 'expression_statement', 'children': ['217']},{'id': '217', 'type': 'call', 'children': ['218', '221']},{'id': '218', 'type': 'attribute', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'sock'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '221', 'type': 'argument_list', 'children': ['222']},{'id': '222', 'type': 'tuple', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '225', 'type': 'expression_statement', 'children': ['226']},{'id': '226', 'type': 'assignment', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '228', 'type': 'unary_operator', 'children': ['229'], 'value': '-'},{'id': '229', 'type': 'integer', 'children': [], 'value': '1'},{'id': '230', 'type': 'expression_statement', 'children': ['231']},{'id': '231', 'type': 'assignment', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '233', 'type': 'call', 'children': ['234', '237']},{'id': '234', 'type': 'attribute', 'children': ['235', '236']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'sock'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'fileno'},{'id': '237', 'type': 'argument_list', 'children': []},{'id': '238', 'type': 'expression_statement', 'children': ['239']},{'id': '239', 'type': 'assignment', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'BUFFER'},{'id': '241', 'type': '()', 'children': ['242']},{'id': '242', 'type': 'boolean_operator', 'children': ['243', '244'], 'value': 'or'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'buffer'},{'id': '244', 'type': 'subscript', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'PAPY_DEFAULTS'},{'id': '246', 'type': 'string', 'children': [], 'value': "'TCP_RCVBUF'"},{'id': '247', 'type': 'else_clause', 'children': ['248']},{'id': '248', 'type': 'block', 'children': ['249']},{'id': '249', 'type': 'raise_statement', 'children': ['250']},{'id': '250', 'type': 'call', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '252', 'type': 'argument_list', 'children': ['253']},{'id': '253', 'type': 'binary_operator', 'children': ['254', '255'], 'value': '%'},{'id': '254', 'type': 'string', 'children': [], 'value': '"got unknown inbox: %s"'},{'id': '255', 'type': '()', 'children': ['256']},{'id': '256', 'type': 'call', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'repr'},{'id': '258', 'type': 'argument_list', 'children': ['259']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'inbox'},{'id': '260', 'type': 'if_statement', 'children': ['261', '264', '346', '420']},{'id': '261', 'type': 'comparison_operator', 'children': ['262', '263'], 'value': '=='},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '263', 'type': 'string', 'children': [], 'value': "'mmap'"},{'id': '264', 'type': 'block', 'children': ['265', '287', '293', '301', '339']},{'id': '265', 'type': 'expression_statement', 'children': ['266']},{'id': '266', 'type': 'assignment', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '268', 'type': 'binary_operator', 'children': ['269', '270'], 'value': '-'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '270', 'type': '()', 'children': ['271']},{'id': '271', 'type': 'binary_operator', 'children': ['272', '273'], 'value': '%'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '273', 'type': '()', 'children': ['274']},{'id': '274', 'type': 'boolean_operator', 'children': ['275', '281', '282'], 'value': 'or'},{'id': '275', 'type': 'call', 'children': ['276', '277']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '277', 'type': 'argument_list', 'children': ['278', '279', '280']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'mmap'},{'id': '279', 'type': 'string', 'children': [], 'value': "'ALLOCATIONGRANULARITY'"},{'id': '280', 'type': 'None', 'children': []},{'id': '281', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '282', 'type': 'call', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '284', 'type': 'argument_list', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'mmap'},{'id': '286', 'type': 'string', 'children': [], 'value': "'PAGESIZE'"},{'id': '287', 'type': 'expression_statement', 'children': ['288']},{'id': '288', 'type': 'assignment', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '290', 'type': 'binary_operator', 'children': ['291', '292'], 'value': '-'},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '293', 'type': 'expression_statement', 'children': ['294']},{'id': '294', 'type': 'assignment', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '296', 'type': 'binary_operator', 'children': ['297', '300'], 'value': '+'},{'id': '297', 'type': 'binary_operator', 'children': ['298', '299'], 'value': '-'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '300', 'type': 'integer', 'children': [], 'value': '1'},{'id': '301', 'type': 'try_statement', 'children': ['302', '321']},{'id': '302', 'type': 'block', 'children': ['303']},{'id': '303', 'type': 'expression_statement', 'children': ['304']},{'id': '304', 'type': 'assignment', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '306', 'type': 'call', 'children': ['307', '310']},{'id': '307', 'type': 'attribute', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'mmap'},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'mmap'},{'id': '310', 'type': 'argument_list', 'children': ['311', '312', '313', '318']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '313', 'type': 'keyword_argument', 'children': ['314', '315']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'access'},{'id': '315', 'type': 'attribute', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'mmap'},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'ACCESS_READ'},{'id': '318', 'type': 'keyword_argument', 'children': ['319', '320']},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '321', 'type': 'except_clause', 'children': ['322', '323']},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '323', 'type': 'block', 'children': ['324']},{'id': '324', 'type': 'expression_statement', 'children': ['325']},{'id': '325', 'type': 'assignment', 'children': ['326', '327']},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '327', 'type': 'call', 'children': ['328', '331']},{'id': '328', 'type': 'attribute', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'mmap'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'mmap'},{'id': '331', 'type': 'argument_list', 'children': ['332', '333', '334']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '333', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '334', 'type': 'keyword_argument', 'children': ['335', '336']},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'access'},{'id': '336', 'type': 'attribute', 'children': ['337', '338']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'mmap'},{'id': '338', 'type': 'identifier', 'children': [], 'value': 'ACCESS_READ'},{'id': '339', 'type': 'expression_statement', 'children': ['340']},{'id': '340', 'type': 'call', 'children': ['341', '344']},{'id': '341', 'type': 'attribute', 'children': ['342', '343']},{'id': '342', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'seek'},{'id': '344', 'type': 'argument_list', 'children': ['345']},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '346', 'type': 'elif_clause', 'children': ['347', '350']},{'id': '347', 'type': 'comparison_operator', 'children': ['348', '349'], 'value': '=='},{'id': '348', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '349', 'type': 'string', 'children': [], 'value': "'string'"},{'id': '350', 'type': 'block', 'children': ['351', '355']},{'id': '351', 'type': 'expression_statement', 'children': ['352']},{'id': '352', 'type': 'assignment', 'children': ['353', '354']},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '354', 'type': 'list', 'children': [], 'value': '[]'},{'id': '355', 'type': 'if_statement', 'children': ['356', '360', '395']},{'id': '356', 'type': 'comparison_operator', 'children': ['357', '358'], 'value': '=='},{'id': '357', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '358', 'type': 'unary_operator', 'children': ['359'], 'value': '-'},{'id': '359', 'type': 'integer', 'children': [], 'value': '1'},{'id': '360', 'type': 'block', 'children': ['361', '386']},{'id': '361', 'type': 'while_statement', 'children': ['362', '363']},{'id': '362', 'type': 'True', 'children': []},{'id': '363', 'type': 'block', 'children': ['364', '374', '379']},{'id': '364', 'type': 'expression_statement', 'children': ['365']},{'id': '365', 'type': 'assignment', 'children': ['366', '367']},{'id': '366', 'type': 'identifier', 'children': [], 'value': 'buffer_'},{'id': '367', 'type': 'call', 'children': ['368', '371']},{'id': '368', 'type': 'attribute', 'children': ['369', '370']},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '370', 'type': 'identifier', 'children': [], 'value': 'read'},{'id': '371', 'type': 'argument_list', 'children': ['372', '373']},{'id': '372', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '373', 'type': 'identifier', 'children': [], 'value': 'BUFFER'},{'id': '374', 'type': 'if_statement', 'children': ['375', '377']},{'id': '375', 'type': 'not_operator', 'children': ['376']},{'id': '376', 'type': 'identifier', 'children': [], 'value': 'buffer_'},{'id': '377', 'type': 'block', 'children': ['378']},{'id': '378', 'type': 'break_statement', 'children': []},{'id': '379', 'type': 'expression_statement', 'children': ['380']},{'id': '380', 'type': 'call', 'children': ['381', '384']},{'id': '381', 'type': 'attribute', 'children': ['382', '383']},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '383', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '384', 'type': 'argument_list', 'children': ['385']},{'id': '385', 'type': 'identifier', 'children': [], 'value': 'buffer_'},{'id': '386', 'type': 'expression_statement', 'children': ['387']},{'id': '387', 'type': 'assignment', 'children': ['388', '389']},{'id': '388', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '389', 'type': 'call', 'children': ['390', '393']},{'id': '390', 'type': 'attribute', 'children': ['391', '392']},{'id': '391', 'type': 'string', 'children': [], 'value': '""'},{'id': '392', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '393', 'type': 'argument_list', 'children': ['394']},{'id': '394', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '395', 'type': 'else_clause', 'children': ['396']},{'id': '396', 'type': 'block', 'children': ['397', '406']},{'id': '397', 'type': 'expression_statement', 'children': ['398']},{'id': '398', 'type': 'call', 'children': ['399', '402']},{'id': '399', 'type': 'attribute', 'children': ['400', '401']},{'id': '400', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '401', 'type': 'identifier', 'children': [], 'value': 'lseek'},{'id': '402', 'type': 'argument_list', 'children': ['403', '404', '405']},{'id': '403', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '404', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '405', 'type': 'integer', 'children': [], 'value': '0'},{'id': '406', 'type': 'expression_statement', 'children': ['407']},{'id': '407', 'type': 'assignment', 'children': ['408', '409']},{'id': '408', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '409', 'type': 'call', 'children': ['410', '413']},{'id': '410', 'type': 'attribute', 'children': ['411', '412']},{'id': '411', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '412', 'type': 'identifier', 'children': [], 'value': 'read'},{'id': '413', 'type': 'argument_list', 'children': ['414', '415']},{'id': '414', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '415', 'type': 'binary_operator', 'children': ['416', '419'], 'value': '+'},{'id': '416', 'type': 'binary_operator', 'children': ['417', '418'], 'value': '-'},{'id': '417', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '418', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '419', 'type': 'integer', 'children': [], 'value': '1'},{'id': '420', 'type': 'else_clause', 'children': ['421']},{'id': '421', 'type': 'block', 'children': ['422']},{'id': '422', 'type': 'raise_statement', 'children': ['423']},{'id': '423', 'type': 'call', 'children': ['424', '425']},{'id': '424', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '425', 'type': 'argument_list', 'children': ['426']},{'id': '426', 'type': 'binary_operator', 'children': ['427', '428'], 'value': '%'},{'id': '427', 'type': 'string', 'children': [], 'value': "'type: %s not understood.'"},{'id': '428', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '429', 'type': 'if_statement', 'children': ['430', '431', '459']},{'id': '430', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '431', 'type': 'block', 'children': ['432']},{'id': '432', 'type': 'if_statement', 'children': ['433', '434', '441']},{'id': '433', 'type': 'identifier', 'children': [], 'value': 'is_socket'},{'id': '434', 'type': 'block', 'children': ['435']},{'id': '435', 'type': 'expression_statement', 'children': ['436']},{'id': '436', 'type': 'call', 'children': ['437', '440']},{'id': '437', 'type': 'attribute', 'children': ['438', '439']},{'id': '438', 'type': 'identifier', 'children': [], 'value': 'sock'},{'id': '439', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '440', 'type': 'argument_list', 'children': []},{'id': '441', 'type': 'else_clause', 'children': ['442']},{'id': '442', 'type': 'block', 'children': ['443', '450']},{'id': '443', 'type': 'expression_statement', 'children': ['444']},{'id': '444', 'type': 'call', 'children': ['445', '448']},{'id': '445', 'type': 'attribute', 'children': ['446', '447']},{'id': '446', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '447', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '448', 'type': 'argument_list', 'children': ['449']},{'id': '449', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '450', 'type': 'expression_statement', 'children': ['451']},{'id': '451', 'type': 'call', 'children': ['452', '455']},{'id': '452', 'type': 'attribute', 'children': ['453', '454']},{'id': '453', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '454', 'type': 'identifier', 'children': [], 'value': 'unlink'},{'id': '455', 'type': 'argument_list', 'children': ['456']},{'id': '456', 'type': 'subscript', 'children': ['457', '458']},{'id': '457', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '458', 'type': 'integer', 'children': [], 'value': '1'},{'id': '459', 'type': 'else_clause', 'children': ['460']},{'id': '460', 'type': 'block', 'children': ['461']},{'id': '461', 'type': 'expression_statement', 'children': ['462']},{'id': '462', 'type': 'call', 'children': ['463', '466']},{'id': '463', 'type': 'attribute', 'children': ['464', '465']},{'id': '464', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '465', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '466', 'type': 'argument_list', 'children': ['467']},{'id': '467', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '468', 'type': 'return_statement', 'children': ['469']},{'id': '469', 'type': 'identifier', 'children': [], 'value': 'data'} | def load_item(inbox, type="string", remove=True, buffer=None):
is_file, is_fifo, is_socket = False, False, False
file = inbox[0]
try:
file_type = file[0]
except:
raise ValueError("invalid inbox item")
if file_type == "file":
is_file = os.path.exists(file[1])
elif file_type == "fifo":
is_fifo = stat.S_ISFIFO(os.stat(file[1]).st_mode)
elif file_type == "socket":
is_socket = True
else:
raise ValueError("type: %s not undertood" % file_type)
if (is_fifo or is_socket) and (type == 'mmap'):
raise ValueError("mmap is not supported for FIFOs and sockets")
if (is_fifo or is_socket) and not remove:
raise ValueError("FIFOs and sockets have to be removed")
start = 0
if is_fifo or is_file:
stop = os.stat(file[1]).st_size - 1
fd = os.open(file[1], os.O_RDONLY)
BUFFER = (buffer or PAPY_DEFAULTS['PIPE_BUF'])
elif is_socket:
host, port = socket.gethostbyname(file[1]), file[2]
sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
sock.connect((host, port))
stop = -1
fd = sock.fileno()
BUFFER = (buffer or PAPY_DEFAULTS['TCP_RCVBUF'])
else:
raise ValueError("got unknown inbox: %s" % (repr(inbox)))
if type == 'mmap':
offset = start - (start % (getattr(mmap, 'ALLOCATIONGRANULARITY', None)\
or getattr(mmap, 'PAGESIZE')))
start = start - offset
stop = stop - offset + 1
try:
data = mmap.mmap(fd, stop, access=mmap.ACCESS_READ, offset=offset)
except TypeError:
data = mmap.mmap(fd, stop, access=mmap.ACCESS_READ)
data.seek(start)
elif type == 'string':
data = []
if stop == -1:
while True:
buffer_ = os.read(fd, BUFFER)
if not buffer_:
break
data.append(buffer_)
data = "".join(data)
else:
os.lseek(fd, start, 0)
data = os.read(fd, stop - start + 1)
else:
raise ValueError('type: %s not understood.' % type)
if remove:
if is_socket:
sock.close()
else:
os.close(fd)
os.unlink(file[1])
else:
os.close(fd)
return data |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'write_validate'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'ctx'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'param'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '7', 'type': 'block', 'children': ['8']},{'id': '8', 'type': 'if_statement', 'children': ['9', '14', '82']},{'id': '9', 'type': 'comparison_operator', 'children': ['10', '11'], 'value': '!='},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '11', 'type': 'tuple', 'children': ['12', '13']},{'id': '12', 'type': 'string', 'children': [], 'value': '"default"'},{'id': '13', 'type': 'string', 'children': [], 'value': '"default"'},{'id': '14', 'type': 'block', 'children': ['15', '43', '68']},{'id': '15', 'type': 'try_statement', 'children': ['16', '29']},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '22']},{'id': '19', 'type': 'pattern_list', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'dest_file'},{'id': '22', 'type': 'tuple', 'children': ['23', '26']},{'id': '23', 'type': 'subscript', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '25', 'type': 'integer', 'children': [], 'value': '0'},{'id': '26', 'type': 'subscript', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '28', 'type': 'integer', 'children': [], 'value': '1'},{'id': '29', 'type': 'except_clause', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'raise_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'click'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'BadParameter'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'concatenated_string', 'children': ['39', '40', '41', '42']},{'id': '39', 'type': 'string', 'children': [], 'value': "'Expecting two arguments, one for how to '"},{'id': '40', 'type': 'string', 'children': [], 'value': "'output (s, single, m, multiple), and '"},{'id': '41', 'type': 'string', 'children': [], 'value': "'the second is a filepath where to put'"},{'id': '42', 'type': 'string', 'children': [], 'value': "' the output.'"},{'id': '43', 'type': 'if_statement', 'children': ['44', '55']},{'id': '44', 'type': 'comparison_operator', 'children': ['45', '50'], 'value': 'not'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '49', 'type': 'argument_list', 'children': []},{'id': '50', 'type': 'list', 'children': ['51', '52', '53', '54'], 'value': "['s', 'single', 'm', 'multiple']"},{'id': '51', 'type': 'string', 'children': [], 'value': "'s'"},{'id': '52', 'type': 'string', 'children': [], 'value': "'single'"},{'id': '53', 'type': 'string', 'children': [], 'value': "'m'"},{'id': '54', 'type': 'string', 'children': [], 'value': "'multiple'"},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'raise_statement', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'click'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'BadParameter'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'concatenated_string', 'children': ['63', '64', '65', '66', '67']},{'id': '63', 'type': 'string', 'children': [], 'value': "'The first argument of the -w/--write '"},{'id': '64', 'type': 'string', 'children': [], 'value': "'option must specifies whether to write'"},{'id': '65', 'type': 'string', 'children': [], 'value': "' to one file per device, or all device'"},{'id': '66', 'type': 'string', 'children': [], 'value': "' output to a single file. Valid options'"},{'id': '67', 'type': 'string', 'children': [], 'value': '\' are "s", "single", "m", and "multiple"\''},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '75']},{'id': '70', 'type': 'subscript', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'ctx'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '74', 'type': 'string', 'children': [], 'value': "'out'"},{'id': '75', 'type': 'tuple', 'children': ['76', '81']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '80', 'type': 'argument_list', 'children': []},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'dest_file'},{'id': '82', 'type': 'else_clause', 'children': ['83']},{'id': '83', 'type': 'block', 'children': ['84']},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '91']},{'id': '86', 'type': 'subscript', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'ctx'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '90', 'type': 'string', 'children': [], 'value': "'out'"},{'id': '91', 'type': 'None', 'children': []} | def write_validate(ctx, param, value):
if value != ("default", "default"):
try:
mode, dest_file = (value[0], value[1])
except IndexError:
raise click.BadParameter('Expecting two arguments, one for how to '
'output (s, single, m, multiple), and '
'the second is a filepath where to put'
' the output.')
if mode.lower() not in ['s', 'single', 'm', 'multiple']:
raise click.BadParameter('The first argument of the -w/--write '
'option must specifies whether to write'
' to one file per device, or all device'
' output to a single file. Valid options'
' are "s", "single", "m", and "multiple"')
ctx.obj['out'] = (mode.lower(), dest_file)
else:
ctx.obj['out'] = None |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'write_out'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'input'},{'id': '5', 'type': 'block', 'children': ['6', '12']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '11']},{'id': '8', 'type': 'pattern_list', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'to_file'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'input'},{'id': '12', 'type': 'if_statement', 'children': ['13', '16']},{'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': '!='},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'to_file'},{'id': '15', 'type': 'string', 'children': [], 'value': '"quiet"'},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'try_statement', 'children': ['18', '25', '35']},{'id': '18', 'type': 'block', 'children': ['19']},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '24']},{'id': '21', 'type': 'pattern_list', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'dest_file'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'to_file'},{'id': '25', 'type': 'except_clause', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '27', 'type': 'block', 'children': ['28']},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'click'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '35', 'type': 'else_clause', 'children': ['36']},{'id': '36', 'type': 'block', 'children': ['37', '59', '94']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'ip'},{'id': '40', 'type': 'call', 'children': ['41', '58']},{'id': '41', 'type': 'attribute', 'children': ['42', '57']},{'id': '42', 'type': 'subscript', 'children': ['43', '56']},{'id': '43', 'type': 'call', 'children': ['44', '54']},{'id': '44', 'type': 'attribute', 'children': ['45', '53']},{'id': '45', 'type': 'subscript', 'children': ['46', '52']},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'string', 'children': [], 'value': "'device: '"},{'id': '52', 'type': 'integer', 'children': [], 'value': '1'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '56', 'type': 'integer', 'children': [], 'value': '0'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '58', 'type': 'argument_list', 'children': []},{'id': '59', 'type': 'if_statement', 'children': ['60', '65']},{'id': '60', 'type': 'comparison_operator', 'children': ['61', '62'], 'value': 'in'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '62', 'type': 'list', 'children': ['63', '64'], 'value': "['m', 'multiple']"},{'id': '63', 'type': 'string', 'children': [], 'value': "'m'"},{'id': '64', 'type': 'string', 'children': [], 'value': "'multiple'"},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'dest_file'},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '73', 'type': 'argument_list', 'children': ['74', '82']},{'id': '74', 'type': 'subscript', 'children': ['75', '81']},{'id': '75', 'type': 'call', 'children': ['76', '79']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'dest_file'},{'id': '81', 'type': 'integer', 'children': [], 'value': '0'},{'id': '82', 'type': 'binary_operator', 'children': ['83', '86'], 'value': '+'},{'id': '83', 'type': 'binary_operator', 'children': ['84', '85'], 'value': '+'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'ip'},{'id': '85', 'type': 'string', 'children': [], 'value': '"_"'},{'id': '86', 'type': 'subscript', 'children': ['87', '93']},{'id': '87', 'type': 'call', 'children': ['88', '91']},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'dest_file'},{'id': '93', 'type': 'integer', 'children': [], 'value': '1'},{'id': '94', 'type': 'try_statement', 'children': ['95', '104', '139']},{'id': '95', 'type': 'block', 'children': ['96']},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'assignment', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'out_file'},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '101', 'type': 'argument_list', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'dest_file'},{'id': '103', 'type': 'string', 'children': [], 'value': "'a+b'"},{'id': '104', 'type': 'except_clause', 'children': ['105', '109']},{'id': '105', 'type': 'as_pattern', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'IOError'},{'id': '107', 'type': 'as_pattern_target', 'children': ['108']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '109', 'type': 'block', 'children': ['110', '125']},{'id': '110', 'type': 'expression_statement', 'children': ['111']},{'id': '111', 'type': 'call', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'call', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '116', 'type': 'argument_list', 'children': ['117', '124']},{'id': '117', 'type': 'binary_operator', 'children': ['118', '121'], 'value': '%'},{'id': '118', 'type': 'concatenated_string', 'children': ['119', '120']},{'id': '119', 'type': 'string', 'children': [], 'value': '"Could not open output file \'%s\' for writing. "'},{'id': '120', 'type': 'string', 'children': [], 'value': '"Output would have been:\\n%s"'},{'id': '121', 'type': 'tuple', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'dest_file'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '124', 'type': 'string', 'children': [], 'value': "'red'"},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '128', 'type': 'argument_list', 'children': ['129']},{'id': '129', 'type': 'call', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '131', 'type': 'argument_list', 'children': ['132', '138']},{'id': '132', 'type': 'binary_operator', 'children': ['133', '134'], 'value': '+'},{'id': '133', 'type': 'string', 'children': [], 'value': "'Here is the error for opening the output file:'"},{'id': '134', 'type': 'call', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '136', 'type': 'argument_list', 'children': ['137']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '138', 'type': 'string', 'children': [], 'value': "'red'"},{'id': '139', 'type': 'else_clause', 'children': ['140']},{'id': '140', 'type': 'block', 'children': ['141', '154', '166']},{'id': '141', 'type': 'expression_statement', 'children': ['142']},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'click'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '146', 'type': 'argument_list', 'children': ['147', '148', '151']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'nl'},{'id': '150', 'type': 'False', 'children': []},{'id': '151', 'type': 'keyword_argument', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'out_file'},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'call', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '157', 'type': 'argument_list', 'children': ['158']},{'id': '158', 'type': 'call', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'binary_operator', 'children': ['162', '163'], 'value': '%'},{'id': '162', 'type': 'string', 'children': [], 'value': "'%s output appended to: %s'"},{'id': '163', 'type': 'tuple', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'ip'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'dest_file'},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'call', 'children': ['168', '171']},{'id': '168', 'type': 'attribute', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'out_file'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '171', 'type': 'argument_list', 'children': []} | def write_out(input):
to_file, output = input
if to_file != "quiet":
try:
mode, dest_file = to_file
except TypeError:
click.echo(output)
else:
ip = output.split('device: ')[1].split('\n')[0].strip()
if mode in ['m', 'multiple']:
dest_file = path.join(path.split(dest_file)[0], ip + "_" +
path.split(dest_file)[1])
try:
out_file = open(dest_file, 'a+b')
except IOError as e:
print(color("Could not open output file '%s' for writing. "
"Output would have been:\n%s" %
(dest_file, output), 'red'))
print(color('Here is the error for opening the output file:' +
str(e), 'red'))
else:
click.echo(output, nl=False, file=out_file)
print(color('%s output appended to: %s' % (ip, dest_file)))
out_file.close() |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'endpoint'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '5', 'type': 'block', 'children': ['6', '15', '52', '79', '110', '134', '157', '168', '177', '202', '229', '246', '288', '316']},{'id': '6', 'type': 'if_statement', 'children': ['7', '12']},{'id': '7', 'type': 'comparison_operator', 'children': ['8', '11'], 'value': '!='},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'method'},{'id': '11', 'type': 'string', 'children': [], 'value': "'POST'"},{'id': '12', 'type': 'block', 'children': ['13']},{'id': '13', 'type': 'raise_statement', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'Http404'},{'id': '15', 'type': 'if_statement', 'children': ['16', '21']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '18', 'type': 'argument_list', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'settings'},{'id': '20', 'type': 'string', 'children': [], 'value': "'BOUNCY_TOPIC_ARN'"},{'id': '21', 'type': 'block', 'children': ['22', '34']},{'id': '22', 'type': 'if_statement', 'children': ['23', '28']},{'id': '23', 'type': 'comparison_operator', 'children': ['24', '25'], 'value': 'not'},{'id': '24', 'type': 'string', 'children': [], 'value': "'HTTP_X_AMZ_SNS_TOPIC_ARN'"},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'META'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'return_statement', 'children': ['30']},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'string', 'children': [], 'value': "'No TopicArn Header'"},{'id': '34', 'type': 'if_statement', 'children': ['35', '46']},{'id': '35', 'type': '()', 'children': ['36']},{'id': '36', 'type': 'not_operator', 'children': ['37']},{'id': '37', 'type': 'comparison_operator', 'children': ['38', '43'], 'value': 'in'},{'id': '38', 'type': 'subscript', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'META'},{'id': '42', 'type': 'string', 'children': [], 'value': "'HTTP_X_AMZ_SNS_TOPIC_ARN'"},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'settings'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'BOUNCY_TOPIC_ARN'},{'id': '46', 'type': 'block', 'children': ['47']},{'id': '47', 'type': 'return_statement', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'string', 'children': [], 'value': "'Bad Topic'"},{'id': '52', 'type': 'if_statement', 'children': ['53', '60', '67']},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '55', 'type': 'argument_list', 'children': ['56', '59']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'body'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '60', 'type': 'block', 'children': ['61']},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'request_body'},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'body'},{'id': '67', 'type': 'else_clause', 'children': ['68']},{'id': '68', 'type': 'block', 'children': ['69']},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'request_body'},{'id': '72', 'type': 'call', 'children': ['73', '78']},{'id': '73', 'type': 'attribute', 'children': ['74', '77']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'body'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '78', 'type': 'argument_list', 'children': []},{'id': '79', 'type': 'try_statement', 'children': ['80', '90']},{'id': '80', 'type': 'block', 'children': ['81']},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'assignment', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '84', 'type': 'call', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'loads'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'request_body'},{'id': '90', 'type': 'except_clause', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '92', 'type': 'block', 'children': ['93', '105']},{'id': '93', 'type': 'expression_statement', 'children': ['94']},{'id': '94', 'type': 'call', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'call', 'children': ['100', '103']},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'string', 'children': [], 'value': "'Notification Not Valid JSON: {}'"},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '103', 'type': 'argument_list', 'children': ['104']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'request_body'},{'id': '105', 'type': 'return_statement', 'children': ['106']},{'id': '106', 'type': 'call', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'string', 'children': [], 'value': "'Not Valid JSON'"},{'id': '110', 'type': 'if_statement', 'children': ['111', '121']},{'id': '111', 'type': 'not_operator', 'children': ['112']},{'id': '112', 'type': 'comparison_operator', 'children': ['113', '117'], 'value': '<='},{'id': '113', 'type': 'call', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '115', 'type': 'argument_list', 'children': ['116']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'VITAL_NOTIFICATION_FIELDS'},{'id': '117', 'type': 'call', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '121', 'type': 'block', 'children': ['122', '129']},{'id': '122', 'type': 'expression_statement', 'children': ['123']},{'id': '123', 'type': 'call', 'children': ['124', '127']},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '127', 'type': 'argument_list', 'children': ['128']},{'id': '128', 'type': 'string', 'children': [], 'value': "'Request Missing Necessary Keys'"},{'id': '129', 'type': 'return_statement', 'children': ['130']},{'id': '130', 'type': 'call', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'},{'id': '132', 'type': 'argument_list', 'children': ['133']},{'id': '133', 'type': 'string', 'children': [], 'value': "'Request Missing Necessary Keys'"},{'id': '134', 'type': 'if_statement', 'children': ['135', '141']},{'id': '135', 'type': 'not_operator', 'children': ['136']},{'id': '136', 'type': 'comparison_operator', 'children': ['137', '140'], 'value': 'in'},{'id': '137', 'type': 'subscript', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '139', 'type': 'string', 'children': [], 'value': "'Type'"},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'ALLOWED_TYPES'},{'id': '141', 'type': 'block', 'children': ['142', '152']},{'id': '142', 'type': 'expression_statement', 'children': ['143']},{'id': '143', 'type': 'call', 'children': ['144', '147']},{'id': '144', 'type': 'attribute', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '147', 'type': 'argument_list', 'children': ['148', '149']},{'id': '148', 'type': 'string', 'children': [], 'value': "'Notification Type Not Known %s'"},{'id': '149', 'type': 'subscript', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '151', 'type': 'string', 'children': [], 'value': "'Type'"},{'id': '152', 'type': 'return_statement', 'children': ['153']},{'id': '153', 'type': 'call', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'},{'id': '155', 'type': 'argument_list', 'children': ['156']},{'id': '156', 'type': 'string', 'children': [], 'value': "'Unknown Notification Type'"},{'id': '157', 'type': 'expression_statement', 'children': ['158']},{'id': '158', 'type': 'assignment', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'domain'},{'id': '160', 'type': 'attribute', 'children': ['161', '167']},{'id': '161', 'type': 'call', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'urlparse'},{'id': '163', 'type': 'argument_list', 'children': ['164']},{'id': '164', 'type': 'subscript', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '166', 'type': 'string', 'children': [], 'value': "'SigningCertURL'"},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'netloc'},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'assignment', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '173', 'type': 'argument_list', 'children': ['174', '175', '176']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'settings'},{'id': '175', 'type': 'string', 'children': [], 'value': "'BOUNCY_CERT_DOMAIN_REGEX'"},{'id': '176', 'type': 'string', 'children': [], 'value': 'r"sns.[a-z0-9\\-]+.amazonaws.com$"'},{'id': '177', 'type': 'if_statement', 'children': ['178', '186']},{'id': '178', 'type': 'not_operator', 'children': ['179']},{'id': '179', 'type': 'call', 'children': ['180', '183']},{'id': '180', 'type': 'attribute', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '183', 'type': 'argument_list', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'domain'},{'id': '186', 'type': 'block', 'children': ['187', '197']},{'id': '187', 'type': 'expression_statement', 'children': ['188']},{'id': '188', 'type': 'call', 'children': ['189', '192']},{'id': '189', 'type': 'attribute', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '192', 'type': 'argument_list', 'children': ['193', '194']},{'id': '193', 'type': 'string', 'children': [], 'value': "'Improper Certificate Location %s'"},{'id': '194', 'type': 'subscript', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '196', 'type': 'string', 'children': [], 'value': "'SigningCertURL'"},{'id': '197', 'type': 'return_statement', 'children': ['198']},{'id': '198', 'type': 'call', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'},{'id': '200', 'type': 'argument_list', 'children': ['201']},{'id': '201', 'type': 'string', 'children': [], 'value': "'Improper Certificate Location'"},{'id': '202', 'type': 'if_statement', 'children': ['203', '216']},{'id': '203', 'type': '()', 'children': ['204']},{'id': '204', 'type': 'boolean_operator', 'children': ['205', '211'], 'value': 'and'},{'id': '205', 'type': 'call', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '207', 'type': 'argument_list', 'children': ['208', '209', '210']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'settings'},{'id': '209', 'type': 'string', 'children': [], 'value': "'BOUNCY_VERIFY_CERTIFICATE'"},{'id': '210', 'type': 'True', 'children': []},{'id': '211', 'type': 'not_operator', 'children': ['212']},{'id': '212', 'type': 'call', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'verify_notification'},{'id': '214', 'type': 'argument_list', 'children': ['215']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '216', 'type': 'block', 'children': ['217', '224']},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'call', 'children': ['219', '222']},{'id': '219', 'type': 'attribute', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '222', 'type': 'argument_list', 'children': ['223']},{'id': '223', 'type': 'string', 'children': [], 'value': "'Verification Failure %s'"},{'id': '224', 'type': 'return_statement', 'children': ['225']},{'id': '225', 'type': 'call', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'},{'id': '227', 'type': 'argument_list', 'children': ['228']},{'id': '228', 'type': 'string', 'children': [], 'value': "'Improper Signature'"},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'call', 'children': ['231', '236']},{'id': '231', 'type': 'attribute', 'children': ['232', '235']},{'id': '232', 'type': 'attribute', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'signals'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'notification'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'send'},{'id': '236', 'type': 'argument_list', 'children': ['237', '240', '243']},{'id': '237', 'type': 'keyword_argument', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'sender'},{'id': '239', 'type': 'string', 'children': [], 'value': "'bouncy_endpoint'"},{'id': '240', 'type': 'keyword_argument', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'notification'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '243', 'type': 'keyword_argument', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '246', 'type': 'if_statement', 'children': ['247', '252', '269']},{'id': '247', 'type': 'comparison_operator', 'children': ['248', '251'], 'value': '=='},{'id': '248', 'type': 'subscript', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '250', 'type': 'string', 'children': [], 'value': "'Type'"},{'id': '251', 'type': 'string', 'children': [], 'value': "'SubscriptionConfirmation'"},{'id': '252', 'type': 'block', 'children': ['253', '264']},{'id': '253', 'type': 'if_statement', 'children': ['254', '261']},{'id': '254', 'type': 'not_operator', 'children': ['255']},{'id': '255', 'type': 'call', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '257', 'type': 'argument_list', 'children': ['258', '259', '260']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'settings'},{'id': '259', 'type': 'string', 'children': [], 'value': "'BOUNCY_AUTO_SUBSCRIBE'"},{'id': '260', 'type': 'True', 'children': []},{'id': '261', 'type': 'block', 'children': ['262']},{'id': '262', 'type': 'raise_statement', 'children': ['263']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'Http404'},{'id': '264', 'type': 'return_statement', 'children': ['265']},{'id': '265', 'type': 'call', 'children': ['266', '267']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'approve_subscription'},{'id': '267', 'type': 'argument_list', 'children': ['268']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '269', 'type': 'elif_clause', 'children': ['270', '275']},{'id': '270', 'type': 'comparison_operator', 'children': ['271', '274'], 'value': '=='},{'id': '271', 'type': 'subscript', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '273', 'type': 'string', 'children': [], 'value': "'Type'"},{'id': '274', 'type': 'string', 'children': [], 'value': "'UnsubscribeConfirmation'"},{'id': '275', 'type': 'block', 'children': ['276', '283']},{'id': '276', 'type': 'expression_statement', 'children': ['277']},{'id': '277', 'type': 'call', 'children': ['278', '281']},{'id': '278', 'type': 'attribute', 'children': ['279', '280']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '281', 'type': 'argument_list', 'children': ['282']},{'id': '282', 'type': 'string', 'children': [], 'value': "'UnsubscribeConfirmation Not Handled'"},{'id': '283', 'type': 'return_statement', 'children': ['284']},{'id': '284', 'type': 'call', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'HttpResponse'},{'id': '286', 'type': 'argument_list', 'children': ['287']},{'id': '287', 'type': 'string', 'children': [], 'value': "'UnsubscribeConfirmation Not Handled'"},{'id': '288', 'type': 'try_statement', 'children': ['289', '301']},{'id': '289', 'type': 'block', 'children': ['290']},{'id': '290', 'type': 'expression_statement', 'children': ['291']},{'id': '291', 'type': 'assignment', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '293', 'type': 'call', 'children': ['294', '297']},{'id': '294', 'type': 'attribute', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'loads'},{'id': '297', 'type': 'argument_list', 'children': ['298']},{'id': '298', 'type': 'subscript', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '300', 'type': 'string', 'children': [], 'value': "'Message'"},{'id': '301', 'type': 'except_clause', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '303', 'type': 'block', 'children': ['304', '311']},{'id': '304', 'type': 'expression_statement', 'children': ['305']},{'id': '305', 'type': 'call', 'children': ['306', '309']},{'id': '306', 'type': 'attribute', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '309', 'type': 'argument_list', 'children': ['310']},{'id': '310', 'type': 'string', 'children': [], 'value': "'Non-Valid JSON Message Received'"},{'id': '311', 'type': 'return_statement', 'children': ['312']},{'id': '312', 'type': 'call', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'HttpResponse'},{'id': '314', 'type': 'argument_list', 'children': ['315']},{'id': '315', 'type': 'string', 'children': [], 'value': "'Message is not valid JSON'"},{'id': '316', 'type': 'return_statement', 'children': ['317']},{'id': '317', 'type': 'call', 'children': ['318', '319']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'process_message'},{'id': '319', 'type': 'argument_list', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'data'} | def endpoint(request):
if request.method != 'POST':
raise Http404
if hasattr(settings, 'BOUNCY_TOPIC_ARN'):
if 'HTTP_X_AMZ_SNS_TOPIC_ARN' not in request.META:
return HttpResponseBadRequest('No TopicArn Header')
if (not request.META['HTTP_X_AMZ_SNS_TOPIC_ARN']
in settings.BOUNCY_TOPIC_ARN):
return HttpResponseBadRequest('Bad Topic')
if isinstance(request.body, str):
request_body = request.body
else:
request_body = request.body.decode()
try:
data = json.loads(request_body)
except ValueError:
logger.warning('Notification Not Valid JSON: {}'.format(request_body))
return HttpResponseBadRequest('Not Valid JSON')
if not set(VITAL_NOTIFICATION_FIELDS) <= set(data):
logger.warning('Request Missing Necessary Keys')
return HttpResponseBadRequest('Request Missing Necessary Keys')
if not data['Type'] in ALLOWED_TYPES:
logger.info('Notification Type Not Known %s', data['Type'])
return HttpResponseBadRequest('Unknown Notification Type')
domain = urlparse(data['SigningCertURL']).netloc
pattern = getattr(
settings, 'BOUNCY_CERT_DOMAIN_REGEX', r"sns.[a-z0-9\-]+.amazonaws.com$"
)
if not re.search(pattern, domain):
logger.warning(
'Improper Certificate Location %s', data['SigningCertURL'])
return HttpResponseBadRequest('Improper Certificate Location')
if (getattr(settings, 'BOUNCY_VERIFY_CERTIFICATE', True)
and not verify_notification(data)):
logger.error('Verification Failure %s', )
return HttpResponseBadRequest('Improper Signature')
signals.notification.send(
sender='bouncy_endpoint', notification=data, request=request)
if data['Type'] == 'SubscriptionConfirmation':
if not getattr(settings, 'BOUNCY_AUTO_SUBSCRIBE', True):
raise Http404
return approve_subscription(data)
elif data['Type'] == 'UnsubscribeConfirmation':
logger.info('UnsubscribeConfirmation Not Handled')
return HttpResponse('UnsubscribeConfirmation Not Handled')
try:
message = json.loads(data['Message'])
except ValueError:
logger.info('Non-Valid JSON Message Received')
return HttpResponse('Message is not valid JSON')
return process_message(message, data) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_process_value'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '7', 'type': 'block', 'children': ['8', '30']},{'id': '8', 'type': 'if_statement', 'children': ['9', '20']},{'id': '9', 'type': 'not_operator', 'children': ['10']},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '12', 'type': 'argument_list', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '14', 'type': 'binary_operator', 'children': ['15', '18'], 'value': '+'},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'string_types'},{'id': '18', 'type': 'tuple', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '20', 'type': 'block', 'children': ['21']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '30', 'type': 'return_statement', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'value'} | def _process_value(self, value, type):
if not isinstance(value, six.string_types + (list,)):
value = json.dumps(value)
return value |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'representatives'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'sorting'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'block', 'children': ['12', '16', '33', '48', '58', '69', '88']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '15', 'type': 'dictionary', 'children': []},{'id': '16', 'type': 'if_statement', 'children': ['17', '20']},{'id': '17', 'type': 'comparison_operator', 'children': ['18', '19'], 'value': 'is'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'block', 'children': ['21']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '26']},{'id': '23', 'type': 'subscript', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '25', 'type': 'string', 'children': [], 'value': "'count'"},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '29', 'type': 'identifier', 'children': [], 'value': '_process_value'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '32', 'type': 'string', 'children': [], 'value': "'int'"},{'id': '33', 'type': 'if_statement', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'sorting'},{'id': '35', 'type': 'block', 'children': ['36']},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '41']},{'id': '38', 'type': 'subscript', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '40', 'type': 'string', 'children': [], 'value': "'sorting'"},{'id': '41', 'type': 'call', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '44', 'type': 'identifier', 'children': [], 'value': '_process_value'},{'id': '45', 'type': 'argument_list', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'sorting'},{'id': '47', 'type': 'string', 'children': [], 'value': "'strbool'"},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'call'},{'id': '55', 'type': 'argument_list', 'children': ['56', '57']},{'id': '56', 'type': 'string', 'children': [], 'value': "'representatives'"},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'representatives'},{'id': '61', 'type': 'boolean_operator', 'children': ['62', '68'], 'value': 'or'},{'id': '62', 'type': 'call', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'string', 'children': [], 'value': "'representatives'"},{'id': '68', 'type': 'dictionary', 'children': []},{'id': '69', 'type': 'for_statement', 'children': ['70', '73', '78']},{'id': '70', 'type': 'pattern_list', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '73', 'type': 'call', 'children': ['74', '77']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'representatives'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '77', 'type': 'argument_list', 'children': []},{'id': '78', 'type': 'block', 'children': ['79']},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '84']},{'id': '81', 'type': 'subscript', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'representatives'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '88', 'type': 'return_statement', 'children': ['89']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'representatives'} | def representatives(self, count=None, sorting=False):
payload = {}
if count is not None:
payload['count'] = self._process_value(count, 'int')
if sorting:
payload['sorting'] = self._process_value(sorting, 'strbool')
resp = self.call('representatives', payload)
representatives = resp.get('representatives') or {}
for k, v in representatives.items():
representatives[k] = int(v)
return representatives |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'iterative_overlap_assembly'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'variant_sequences'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'min_overlap_size'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'MIN_VARIANT_SEQUENCE_ASSEMBLY_OVERLAP_SIZE'},{'id': '8', 'type': 'block', 'children': ['9', '19', '26', '33', '40', '49', '57']},{'id': '9', 'type': 'if_statement', 'children': ['10', '16']},{'id': '10', 'type': 'comparison_operator', 'children': ['11', '15'], 'value': '<='},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '13', 'type': 'argument_list', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'variant_sequences'},{'id': '15', 'type': 'integer', 'children': [], 'value': '1'},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'return_statement', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'variant_sequences'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'n_before_collapse'},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '24', 'type': 'argument_list', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'variant_sequences'},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'variant_sequences'},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'collapse_substrings'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'variant_sequences'},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'n_after_collapse'},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'variant_sequences'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'call', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '45', 'type': 'argument_list', 'children': ['46', '47', '48']},{'id': '46', 'type': 'string', 'children': [], 'value': '"Collapsed %d -> %d sequences"'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'n_before_collapse'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'n_after_collapse'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'merged_variant_sequences'},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'greedy_merge'},{'id': '54', 'type': 'argument_list', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'variant_sequences'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'min_overlap_size'},{'id': '57', 'type': 'return_statement', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '63', 'type': 'argument_list', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'merged_variant_sequences'},{'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '67', 'type': 'lambda', 'children': ['68', '70']},{'id': '68', 'type': 'lambda_parameters', 'children': ['69']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '70', 'type': 'unary_operator', 'children': ['71'], 'value': '-'},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'reads'} | def iterative_overlap_assembly(
variant_sequences,
min_overlap_size=MIN_VARIANT_SEQUENCE_ASSEMBLY_OVERLAP_SIZE):
if len(variant_sequences) <= 1:
return variant_sequences
n_before_collapse = len(variant_sequences)
variant_sequences = collapse_substrings(variant_sequences)
n_after_collapse = len(variant_sequences)
logger.info(
"Collapsed %d -> %d sequences",
n_before_collapse,
n_after_collapse)
merged_variant_sequences = greedy_merge(variant_sequences, min_overlap_size)
return list(sorted(
merged_variant_sequences,
key=lambda seq: -len(seq.reads))) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'ortho_basis'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'normal'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ref_vec'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '14', '21', '28', '35', '42', '46', '62', '77', '88', '205', '215', '226', '236', '247']},{'id': '9', 'type': 'import_statement', 'children': ['10']},{'id': '10', 'type': 'aliased_import', 'children': ['11', '13']},{'id': '11', 'type': 'dotted_name', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '14', 'type': 'import_from_statement', 'children': ['15', '17']},{'id': '15', 'type': 'dotted_name', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '17', 'type': 'aliased_import', 'children': ['18', '20']},{'id': '18', 'type': 'dotted_name', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'linalg'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '21', 'type': 'import_from_statement', 'children': ['22', '24']},{'id': '22', 'type': 'dotted_name', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '24', 'type': 'aliased_import', 'children': ['25', '27']},{'id': '25', 'type': 'dotted_name', 'children': ['26']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'random'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'sprnd'},{'id': '28', 'type': 'import_from_statement', 'children': ['29', '33']},{'id': '29', 'type': 'relative_import', 'children': ['30', '31']},{'id': '30', 'type': 'import_prefix', 'children': []},{'id': '31', 'type': 'dotted_name', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '33', 'type': 'dotted_name', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '35', 'type': 'import_from_statement', 'children': ['36', '40']},{'id': '36', 'type': 'relative_import', 'children': ['37', '38']},{'id': '37', 'type': 'import_prefix', 'children': []},{'id': '38', 'type': 'dotted_name', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '40', 'type': 'dotted_name', 'children': ['41']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'VectorError'},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'RAND_MAG'},{'id': '45', 'type': 'float', 'children': [], 'value': '0.25'},{'id': '46', 'type': 'if_statement', 'children': ['47', '56']},{'id': '47', 'type': 'not_operator', 'children': ['48']},{'id': '48', 'type': 'comparison_operator', 'children': ['49', '55'], 'value': '=='},{'id': '49', 'type': 'call', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'normal'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '55', 'type': 'integer', 'children': [], 'value': '1'},{'id': '56', 'type': 'block', 'children': ['57']},{'id': '57', 'type': 'raise_statement', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'string', 'children': [], 'value': '"\'normal\' is not a vector"'},{'id': '62', 'type': 'if_statement', 'children': ['63', '71']},{'id': '63', 'type': 'not_operator', 'children': ['64']},{'id': '64', 'type': 'comparison_operator', 'children': ['65', '70'], 'value': '=='},{'id': '65', 'type': 'subscript', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'normal'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '69', 'type': 'integer', 'children': [], 'value': '0'},{'id': '70', 'type': 'integer', 'children': [], 'value': '3'},{'id': '71', 'type': 'block', 'children': ['72']},{'id': '72', 'type': 'raise_statement', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'string', 'children': [], 'value': '"Length of \'normal\' is not three"'},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '80', 'type': 'binary_operator', 'children': ['81', '82'], 'value': '/'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'normal'},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'normal'},{'id': '88', 'type': 'if_statement', 'children': ['89', '92', '145']},{'id': '89', 'type': 'comparison_operator', 'children': ['90', '91'], 'value': 'is'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'ref_vec'},{'id': '91', 'type': 'None', 'children': []},{'id': '92', 'type': 'block', 'children': ['93', '97', '126', '134']},{'id': '93', 'type': 'expression_statement', 'children': ['94']},{'id': '94', 'type': 'assignment', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '97', 'type': 'while_statement', 'children': ['98', '103']},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'parallel_check'},{'id': '100', 'type': 'argument_list', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '103', 'type': 'block', 'children': ['104']},{'id': '104', 'type': 'expression_statement', 'children': ['105']},{'id': '105', 'type': 'assignment', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '107', 'type': 'call', 'children': ['108', '111']},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'float64'},{'id': '111', 'type': 'argument_list', 'children': ['112']},{'id': '112', 'type': 'binary_operator', 'children': ['113', '116'], 'value': '+'},{'id': '113', 'type': 'binary_operator', 'children': ['114', '115'], 'value': '-'},{'id': '114', 'type': 'float', 'children': [], 'value': '1.0'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'RAND_MAG'},{'id': '116', 'type': 'binary_operator', 'children': ['117', '120'], 'value': '*'},{'id': '117', 'type': 'binary_operator', 'children': ['118', '119'], 'value': '*'},{'id': '118', 'type': 'integer', 'children': [], 'value': '2'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'RAND_MAG'},{'id': '120', 'type': 'call', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'sprnd'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'rand'},{'id': '124', 'type': 'argument_list', 'children': ['125']},{'id': '125', 'type': 'integer', 'children': [], 'value': '3'},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '129', 'type': 'call', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'rej'},{'id': '131', 'type': 'argument_list', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '137', 'type': 'binary_operator', 'children': ['138', '139'], 'value': '/'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '139', 'type': 'call', 'children': ['140', '143']},{'id': '140', 'type': 'attribute', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '143', 'type': 'argument_list', 'children': ['144']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '145', 'type': 'else_clause', 'children': ['146']},{'id': '146', 'type': 'block', 'children': ['147', '163', '178', '189']},{'id': '147', 'type': 'if_statement', 'children': ['148', '157']},{'id': '148', 'type': 'not_operator', 'children': ['149']},{'id': '149', 'type': 'comparison_operator', 'children': ['150', '156'], 'value': '=='},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'attribute', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'ref_vec'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '156', 'type': 'integer', 'children': [], 'value': '1'},{'id': '157', 'type': 'block', 'children': ['158']},{'id': '158', 'type': 'raise_statement', 'children': ['159']},{'id': '159', 'type': 'call', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '161', 'type': 'argument_list', 'children': ['162']},{'id': '162', 'type': 'string', 'children': [], 'value': '"ref_vec is not a vector"'},{'id': '163', 'type': 'if_statement', 'children': ['164', '172']},{'id': '164', 'type': 'not_operator', 'children': ['165']},{'id': '165', 'type': 'comparison_operator', 'children': ['166', '171'], 'value': '=='},{'id': '166', 'type': 'subscript', 'children': ['167', '170']},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'ref_vec'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '170', 'type': 'integer', 'children': [], 'value': '0'},{'id': '171', 'type': 'integer', 'children': [], 'value': '3'},{'id': '172', 'type': 'block', 'children': ['173']},{'id': '173', 'type': 'raise_statement', 'children': ['174']},{'id': '174', 'type': 'call', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '176', 'type': 'argument_list', 'children': ['177']},{'id': '177', 'type': 'string', 'children': [], 'value': '"ref_vec length is not three"'},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'assignment', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '181', 'type': 'binary_operator', 'children': ['182', '183'], 'value': '/'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'ref_vec'},{'id': '183', 'type': 'call', 'children': ['184', '187']},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '187', 'type': 'argument_list', 'children': ['188']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'ref_vec'},{'id': '189', 'type': 'if_statement', 'children': ['190', '195']},{'id': '190', 'type': 'call', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'parallel_check'},{'id': '192', 'type': 'argument_list', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '195', 'type': 'block', 'children': ['196']},{'id': '196', 'type': 'raise_statement', 'children': ['197']},{'id': '197', 'type': 'call', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'VectorError'},{'id': '199', 'type': 'argument_list', 'children': ['200', '203', '204']},{'id': '200', 'type': 'attribute', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'VectorError'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'NONPRL'},{'id': '203', 'type': 'string', 'children': [], 'value': '"\'normal\' and \'ref_vec\' are too nearly parallel."'},{'id': '204', 'type': 'string', 'children': [], 'value': '""'},{'id': '205', 'type': 'expression_statement', 'children': ['206']},{'id': '206', 'type': 'assignment', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'on2'},{'id': '208', 'type': 'call', 'children': ['209', '212']},{'id': '209', 'type': 'attribute', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'cross'},{'id': '212', 'type': 'argument_list', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '215', 'type': 'expression_statement', 'children': ['216']},{'id': '216', 'type': 'assignment', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'on2'},{'id': '218', 'type': 'binary_operator', 'children': ['219', '220'], 'value': '/'},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'on2'},{'id': '220', 'type': 'call', 'children': ['221', '224']},{'id': '221', 'type': 'attribute', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '224', 'type': 'argument_list', 'children': ['225']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'on2'},{'id': '226', 'type': 'expression_statement', 'children': ['227']},{'id': '227', 'type': 'assignment', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'on1'},{'id': '229', 'type': 'call', 'children': ['230', '233']},{'id': '230', 'type': 'attribute', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'cross'},{'id': '233', 'type': 'argument_list', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'on2'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'assignment', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'on1'},{'id': '239', 'type': 'binary_operator', 'children': ['240', '241'], 'value': '/'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'on1'},{'id': '241', 'type': 'call', 'children': ['242', '245']},{'id': '242', 'type': 'attribute', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '245', 'type': 'argument_list', 'children': ['246']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'on1'},{'id': '247', 'type': 'return_statement', 'children': ['248']},{'id': '248', 'type': 'expression_list', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'on1'},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'on2'} | def ortho_basis(normal, ref_vec=None):
import numpy as np
from scipy import linalg as spla
from scipy import random as sprnd
from ..const import PRM
from ..error import VectorError
RAND_MAG = 0.25
if not len(normal.shape) == 1:
raise ValueError("'normal' is not a vector")
if not normal.shape[0] == 3:
raise ValueError("Length of 'normal' is not three")
nv = normal / spla.norm(normal)
if ref_vec is None:
rv = nv
while parallel_check(nv, rv):
rv = np.float64(1.0 - RAND_MAG + 2 * RAND_MAG * sprnd.rand(3))
rv = rej(rv, nv)
rv = rv / spla.norm(rv)
else:
if not len(ref_vec.shape) == 1:
raise ValueError("ref_vec is not a vector")
if not ref_vec.shape[0] == 3:
raise ValueError("ref_vec length is not three")
rv = ref_vec / spla.norm(ref_vec)
if parallel_check(nv, rv):
raise VectorError(VectorError.NONPRL,
"'normal' and 'ref_vec' are too nearly parallel.", "")
on2 = np.cross(nv, rv)
on2 = on2 / spla.norm(on2)
on1 = np.cross(on2, nv)
on1 = on1 / spla.norm(on1)
return on1, on2 |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'orthonorm_check'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '10']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'tol'},{'id': '7', 'type': 'attribute', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': '_DEF'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'ORTHONORM_TOL'},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'report'},{'id': '12', 'type': 'False', 'children': []},{'id': '13', 'type': 'block', 'children': ['14', '19', '26', '30', '34', '38', '80', '94', '179']},{'id': '14', 'type': 'import_statement', 'children': ['15']},{'id': '15', 'type': 'aliased_import', 'children': ['16', '18']},{'id': '16', 'type': 'dotted_name', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '19', 'type': 'import_from_statement', 'children': ['20', '24']},{'id': '20', 'type': 'relative_import', 'children': ['21', '22']},{'id': '21', 'type': 'import_prefix', 'children': []},{'id': '22', 'type': 'dotted_name', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '24', 'type': 'dotted_name', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'delta_fxn'},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'orth'},{'id': '29', 'type': 'True', 'children': []},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'n_fail'},{'id': '33', 'type': 'list', 'children': [], 'value': '[]'},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'o_fail'},{'id': '37', 'type': 'list', 'children': [], 'value': '[]'},{'id': '38', 'type': 'if_statement', 'children': ['39', '47', '64']},{'id': '39', 'type': 'comparison_operator', 'children': ['40', '46'], 'value': '=='},{'id': '40', 'type': 'call', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '46', 'type': 'integer', 'children': [], 'value': '1'},{'id': '47', 'type': 'block', 'children': ['48']},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'a_mx'},{'id': '51', 'type': 'attribute', 'children': ['52', '63']},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'matrix'},{'id': '56', 'type': 'argument_list', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '58', 'type': 'keyword_argument', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'float_'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '64', 'type': 'else_clause', 'children': ['65']},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'a_mx'},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'matrix'},{'id': '73', 'type': 'argument_list', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'float_'},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'a_split'},{'id': '83', 'type': 'call', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'hsplit'},{'id': '87', 'type': 'argument_list', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'a_mx'},{'id': '89', 'type': 'subscript', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'a_mx'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '93', 'type': 'integer', 'children': [], 'value': '1'},{'id': '94', 'type': 'for_statement', 'children': ['95', '96', '104']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'iter1'},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'subscript', 'children': ['100', '103']},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'a_mx'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '103', 'type': 'integer', 'children': [], 'value': '1'},{'id': '104', 'type': 'block', 'children': ['105']},{'id': '105', 'type': 'for_statement', 'children': ['106', '107', '116']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'iter2'},{'id': '107', 'type': 'call', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '109', 'type': 'argument_list', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'iter1'},{'id': '111', 'type': 'subscript', 'children': ['112', '115']},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'a_mx'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '115', 'type': 'integer', 'children': [], 'value': '1'},{'id': '116', 'type': 'block', 'children': ['117']},{'id': '117', 'type': 'if_statement', 'children': ['118', '148']},{'id': '118', 'type': 'not_operator', 'children': ['119']},{'id': '119', 'type': 'comparison_operator', 'children': ['120', '147'], 'value': '<='},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 'binary_operator', 'children': ['124', '137'], 'value': '-'},{'id': '124', 'type': 'subscript', 'children': ['125', '135', '136']},{'id': '125', 'type': '()', 'children': ['126']},{'id': '126', 'type': 'binary_operator', 'children': ['127', '132'], 'value': '*'},{'id': '127', 'type': 'attribute', 'children': ['128', '131']},{'id': '128', 'type': 'subscript', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'a_split'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'iter1'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '132', 'type': 'subscript', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'a_split'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'iter2'},{'id': '135', 'type': 'integer', 'children': [], 'value': '0'},{'id': '136', 'type': 'integer', 'children': [], 'value': '0'},{'id': '137', 'type': 'call', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'float_'},{'id': '141', 'type': 'argument_list', 'children': ['142']},{'id': '142', 'type': 'call', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'delta_fxn'},{'id': '144', 'type': 'argument_list', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'iter1'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'iter2'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'tol'},{'id': '148', 'type': 'block', 'children': ['149', '153']},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'assignment', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'orth'},{'id': '152', 'type': 'False', 'children': []},{'id': '153', 'type': 'if_statement', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'report'},{'id': '155', 'type': 'block', 'children': ['156']},{'id': '156', 'type': 'if_statement', 'children': ['157', '160', '168']},{'id': '157', 'type': 'comparison_operator', 'children': ['158', '159'], 'value': '=='},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'iter1'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'iter2'},{'id': '160', 'type': 'block', 'children': ['161']},{'id': '161', 'type': 'expression_statement', 'children': ['162']},{'id': '162', 'type': 'call', 'children': ['163', '166']},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'n_fail'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '166', 'type': 'argument_list', 'children': ['167']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'iter1'},{'id': '168', 'type': 'else_clause', 'children': ['169']},{'id': '169', 'type': 'block', 'children': ['170']},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'o_fail'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '175', 'type': 'argument_list', 'children': ['176']},{'id': '176', 'type': 'tuple', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'iter1'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'iter2'},{'id': '179', 'type': 'if_statement', 'children': ['180', '181', '187']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'report'},{'id': '181', 'type': 'block', 'children': ['182']},{'id': '182', 'type': 'return_statement', 'children': ['183']},{'id': '183', 'type': 'expression_list', 'children': ['184', '185', '186']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'orth'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'n_fail'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'o_fail'},{'id': '187', 'type': 'else_clause', 'children': ['188']},{'id': '188', 'type': 'block', 'children': ['189']},{'id': '189', 'type': 'return_statement', 'children': ['190']},{'id': '190', 'type': 'expression_list', 'children': ['191', '192', '193']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'orth'},{'id': '192', 'type': 'None', 'children': []},{'id': '193', 'type': 'None', 'children': []} | def orthonorm_check(a, tol=_DEF.ORTHONORM_TOL, report=False):
import numpy as np
from .base import delta_fxn
orth = True
n_fail = []
o_fail = []
if len(a.shape) == 1:
a_mx = np.matrix(a, dtype=np.float_).T
else:
a_mx = np.matrix(a, dtype=np.float_)
a_split = np.hsplit(a_mx, a_mx.shape[1])
for iter1 in range(a_mx.shape[1]):
for iter2 in range(iter1,a_mx.shape[1]):
if not abs((a_split[iter1].T * a_split[iter2])[0,0] -
np.float_(delta_fxn(iter1, iter2))) <= tol:
orth = False
if report:
if iter1 == iter2:
n_fail.append(iter1)
else:
o_fail.append((iter1, iter2))
if report:
return orth, n_fail, o_fail
else:
return orth, None, None |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'parallel_check'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '6', 'type': 'block', 'children': ['7', '14', '19', '23', '51', '70', '78', '102']},{'id': '7', 'type': 'import_from_statement', 'children': ['8', '12']},{'id': '8', 'type': 'relative_import', 'children': ['9', '10']},{'id': '9', 'type': 'import_prefix', 'children': []},{'id': '10', 'type': 'dotted_name', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '12', 'type': 'dotted_name', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '14', 'type': 'import_statement', 'children': ['15']},{'id': '15', 'type': 'aliased_import', 'children': ['16', '18']},{'id': '16', 'type': 'dotted_name', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'par'},{'id': '22', 'type': 'False', 'children': []},{'id': '23', 'type': 'for_statement', 'children': ['24', '27', '33']},{'id': '24', 'type': 'pattern_list', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'list', 'children': ['31', '32'], 'value': '[vec1, vec2]'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'if_statement', 'children': ['35', '44', '50']},{'id': '35', 'type': 'not_operator', 'children': ['36']},{'id': '36', 'type': 'comparison_operator', 'children': ['37', '43'], 'value': '=='},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '43', 'type': 'integer', 'children': [], 'value': '1'},{'id': '44', 'type': 'ERROR', 'children': ['45', '46', '48', '49']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '46', 'type': 'ERROR', 'children': ['47']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'Bad'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'vector'},{'id': '50', 'type': 'block', 'children': [], 'value': ''},{'id': '51', 'type': 'if_statement', 'children': ['52', '64']},{'id': '52', 'type': 'not_operator', 'children': ['53']},{'id': '53', 'type': 'comparison_operator', 'children': ['54', '59'], 'value': '=='},{'id': '54', 'type': 'subscript', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '58', 'type': 'integer', 'children': [], 'value': '0'},{'id': '59', 'type': 'subscript', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '63', 'type': 'integer', 'children': [], 'value': '0'},{'id': '64', 'type': 'block', 'children': ['65']},{'id': '65', 'type': 'raise_statement', 'children': ['66']},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'string', 'children': [], 'value': '"Vector length mismatch"'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'angle'},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'vec_angle'},{'id': '75', 'type': 'argument_list', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '78', 'type': 'if_statement', 'children': ['79', '97']},{'id': '79', 'type': 'comparison_operator', 'children': ['80', '94'], 'value': '<'},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'list', 'children': ['84', '88'], 'value': '[abs(angle), abs(angle - 180.)]'},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'angle'},{'id': '88', 'type': 'call', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'binary_operator', 'children': ['92', '93'], 'value': '-'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'angle'},{'id': '93', 'type': 'float', 'children': [], 'value': '180.'},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'NON_PARALLEL_TOL'},{'id': '97', 'type': 'block', 'children': ['98']},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'par'},{'id': '101', 'type': 'True', 'children': []},{'id': '102', 'type': 'return_statement', 'children': ['103']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'par'} | def parallel_check(vec1, vec2):
from ..const import PRM
import numpy as np
par = False
for n,v in enumerate([vec1, vec2]):
if not len(v.shape) == 1:
raise ValueError("Bad shape for vector
if not vec1.shape[0] == vec2.shape[0]:
raise ValueError("Vector length mismatch")
angle = vec_angle(vec1, vec2)
if min([abs(angle), abs(angle - 180.)]) < PRM.NON_PARALLEL_TOL:
par = True
return par |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'vec_angle'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '6', 'type': 'block', 'children': ['7', '12', '19', '26', '41', '56', '74', '91', '108', '132', '167']},{'id': '7', 'type': 'import_statement', 'children': ['8']},{'id': '8', 'type': 'aliased_import', 'children': ['9', '11']},{'id': '9', 'type': 'dotted_name', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '12', 'type': 'import_from_statement', 'children': ['13', '15']},{'id': '13', 'type': 'dotted_name', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '15', 'type': 'aliased_import', 'children': ['16', '18']},{'id': '16', 'type': 'dotted_name', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'linalg'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '19', 'type': 'import_from_statement', 'children': ['20', '24']},{'id': '20', 'type': 'relative_import', 'children': ['21', '22']},{'id': '21', 'type': 'import_prefix', 'children': []},{'id': '22', 'type': 'dotted_name', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '24', 'type': 'dotted_name', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '26', 'type': 'if_statement', 'children': ['27', '35']},{'id': '27', 'type': 'comparison_operator', 'children': ['28', '34'], 'value': '!='},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '34', 'type': 'integer', 'children': [], 'value': '1'},{'id': '35', 'type': 'block', 'children': ['36']},{'id': '36', 'type': 'raise_statement', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'string', 'children': [], 'value': '"\'vec1\' is not a vector"'},{'id': '41', 'type': 'if_statement', 'children': ['42', '50']},{'id': '42', 'type': 'comparison_operator', 'children': ['43', '49'], 'value': '!='},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '49', 'type': 'integer', 'children': [], 'value': '1'},{'id': '50', 'type': 'block', 'children': ['51']},{'id': '51', 'type': 'raise_statement', 'children': ['52']},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'string', 'children': [], 'value': '"\'vec2\' is not a vector"'},{'id': '56', 'type': 'if_statement', 'children': ['57', '68']},{'id': '57', 'type': 'comparison_operator', 'children': ['58', '63'], 'value': '!='},{'id': '58', 'type': 'subscript', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '62', 'type': 'integer', 'children': [], 'value': '0'},{'id': '63', 'type': 'subscript', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '67', 'type': 'integer', 'children': [], 'value': '0'},{'id': '68', 'type': 'block', 'children': ['69']},{'id': '69', 'type': 'raise_statement', 'children': ['70']},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'string', 'children': [], 'value': '"Vector lengths are not equal"'},{'id': '74', 'type': 'if_statement', 'children': ['75', '85']},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '82'], 'value': '<'},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'ZERO_VEC_TOL'},{'id': '85', 'type': 'block', 'children': ['86']},{'id': '86', 'type': 'raise_statement', 'children': ['87']},{'id': '87', 'type': 'call', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'string', 'children': [], 'value': '"\'vec1\' norm is too small"'},{'id': '91', 'type': 'if_statement', 'children': ['92', '102']},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '99'], 'value': '<'},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'ZERO_VEC_TOL'},{'id': '102', 'type': 'block', 'children': ['103']},{'id': '103', 'type': 'raise_statement', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '106', 'type': 'argument_list', 'children': ['107']},{'id': '107', 'type': 'string', 'children': [], 'value': '"\'vec2\' norm is too small"'},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'assignment', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'dotp'},{'id': '111', 'type': 'binary_operator', 'children': ['112', '126'], 'value': '/'},{'id': '112', 'type': 'binary_operator', 'children': ['113', '120'], 'value': '/'},{'id': '113', 'type': 'call', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'dot'},{'id': '117', 'type': 'argument_list', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '120', 'type': 'call', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '124', 'type': 'argument_list', 'children': ['125']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'vec1'},{'id': '126', 'type': 'call', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'vec2'},{'id': '132', 'type': 'if_statement', 'children': ['133', '136', '141', '151']},{'id': '133', 'type': 'comparison_operator', 'children': ['134', '135'], 'value': '>'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'dotp'},{'id': '135', 'type': 'integer', 'children': [], 'value': '1'},{'id': '136', 'type': 'block', 'children': ['137']},{'id': '137', 'type': 'expression_statement', 'children': ['138']},{'id': '138', 'type': 'assignment', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'angle'},{'id': '140', 'type': 'float', 'children': [], 'value': '0.'},{'id': '141', 'type': 'elif_clause', 'children': ['142', '146']},{'id': '142', 'type': 'comparison_operator', 'children': ['143', '144'], 'value': '<'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'dotp'},{'id': '144', 'type': 'unary_operator', 'children': ['145'], 'value': '-'},{'id': '145', 'type': 'integer', 'children': [], 'value': '1'},{'id': '146', 'type': 'block', 'children': ['147']},{'id': '147', 'type': 'expression_statement', 'children': ['148']},{'id': '148', 'type': 'assignment', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'angle'},{'id': '150', 'type': 'float', 'children': [], 'value': '180.'},{'id': '151', 'type': 'else_clause', 'children': ['152']},{'id': '152', 'type': 'block', 'children': ['153']},{'id': '153', 'type': 'expression_statement', 'children': ['154']},{'id': '154', 'type': 'assignment', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'angle'},{'id': '156', 'type': 'call', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'degrees'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'call', 'children': ['162', '165']},{'id': '162', 'type': 'attribute', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'arccos'},{'id': '165', 'type': 'argument_list', 'children': ['166']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'dotp'},{'id': '167', 'type': 'return_statement', 'children': ['168']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'angle'} | def vec_angle(vec1, vec2):
import numpy as np
from scipy import linalg as spla
from ..const import PRM
if len(vec1.shape) != 1:
raise ValueError("'vec1' is not a vector")
if len(vec2.shape) != 1:
raise ValueError("'vec2' is not a vector")
if vec1.shape[0] != vec2.shape[0]:
raise ValueError("Vector lengths are not equal")
if spla.norm(vec1) < PRM.ZERO_VEC_TOL:
raise ValueError("'vec1' norm is too small")
if spla.norm(vec2) < PRM.ZERO_VEC_TOL:
raise ValueError("'vec2' norm is too small")
dotp = np.dot(vec1, vec2) / spla.norm(vec1) / spla.norm(vec2)
if dotp > 1:
angle = 0.
elif dotp < -1:
angle = 180.
else:
angle = np.degrees(np.arccos(dotp))
return angle |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'ctr_mass'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '6', 'type': 'block', 'children': ['7', '12', '21', '36', '51', '68', '100', '124', '168']},{'id': '7', 'type': 'import_statement', 'children': ['8']},{'id': '8', 'type': 'aliased_import', 'children': ['9', '11']},{'id': '9', 'type': 'dotted_name', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '12', 'type': 'import_from_statement', 'children': ['13', '17']},{'id': '13', 'type': 'relative_import', 'children': ['14', '15']},{'id': '14', 'type': 'import_prefix', 'children': []},{'id': '15', 'type': 'dotted_name', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '17', 'type': 'aliased_import', 'children': ['18', '20']},{'id': '18', 'type': 'dotted_name', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'safe_cast'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '21', 'type': 'if_statement', 'children': ['22', '30']},{'id': '22', 'type': 'comparison_operator', 'children': ['23', '29'], 'value': '!='},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '25', 'type': 'argument_list', 'children': ['26']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '29', 'type': 'integer', 'children': [], 'value': '1'},{'id': '30', 'type': 'block', 'children': ['31']},{'id': '31', 'type': 'raise_statement', 'children': ['32']},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'string', 'children': [], 'value': '"Geometry is not a vector"'},{'id': '36', 'type': 'if_statement', 'children': ['37', '45']},{'id': '37', 'type': 'comparison_operator', 'children': ['38', '44'], 'value': '!='},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '44', 'type': 'integer', 'children': [], 'value': '1'},{'id': '45', 'type': 'block', 'children': ['46']},{'id': '46', 'type': 'raise_statement', 'children': ['47']},{'id': '47', 'type': 'call', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'string', 'children': [], 'value': '"Masses cannot be parsed as a vector"'},{'id': '51', 'type': 'if_statement', 'children': ['52', '62']},{'id': '52', 'type': 'not_operator', 'children': ['53']},{'id': '53', 'type': 'comparison_operator', 'children': ['54', '61'], 'value': '=='},{'id': '54', 'type': 'binary_operator', 'children': ['55', '60'], 'value': '%'},{'id': '55', 'type': 'subscript', 'children': ['56', '59']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '59', 'type': 'integer', 'children': [], 'value': '0'},{'id': '60', 'type': 'integer', 'children': [], 'value': '3'},{'id': '61', 'type': 'integer', 'children': [], 'value': '0'},{'id': '62', 'type': 'block', 'children': ['63']},{'id': '63', 'type': 'raise_statement', 'children': ['64']},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'string', 'children': [], 'value': '"Geometry is not length-3N"'},{'id': '68', 'type': 'if_statement', 'children': ['69', '94']},{'id': '69', 'type': 'boolean_operator', 'children': ['70', '83'], 'value': 'and'},{'id': '70', 'type': 'comparison_operator', 'children': ['71', '76'], 'value': '!='},{'id': '71', 'type': 'subscript', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '75', 'type': 'integer', 'children': [], 'value': '0'},{'id': '76', 'type': 'binary_operator', 'children': ['77', '78'], 'value': '*'},{'id': '77', 'type': 'integer', 'children': [], 'value': '3'},{'id': '78', 'type': 'subscript', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '82', 'type': 'integer', 'children': [], 'value': '0'},{'id': '83', 'type': 'comparison_operator', 'children': ['84', '89'], 'value': '!='},{'id': '84', 'type': 'subscript', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '88', 'type': 'integer', 'children': [], 'value': '0'},{'id': '89', 'type': 'subscript', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '93', 'type': 'integer', 'children': [], 'value': '0'},{'id': '94', 'type': 'block', 'children': ['95']},{'id': '95', 'type': 'raise_statement', 'children': ['96']},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'string', 'children': [], 'value': '"Inconsistent geometry and masses vector lengths"'},{'id': '100', 'type': 'if_statement', 'children': ['101', '114']},{'id': '101', 'type': 'comparison_operator', 'children': ['102', '107'], 'value': '=='},{'id': '102', 'type': 'subscript', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '106', 'type': 'integer', 'children': [], 'value': '0'},{'id': '107', 'type': 'binary_operator', 'children': ['108', '109'], 'value': '*'},{'id': '108', 'type': 'integer', 'children': [], 'value': '3'},{'id': '109', 'type': 'subscript', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '113', 'type': 'integer', 'children': [], 'value': '0'},{'id': '114', 'type': 'block', 'children': ['115']},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'assignment', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '118', 'type': 'call', 'children': ['119', '122']},{'id': '119', 'type': 'attribute', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'repeat'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 'integer', 'children': [], 'value': '3'},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'assignment', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'ctr'},{'id': '127', 'type': 'binary_operator', 'children': ['128', '160'], 'value': '/'},{'id': '128', 'type': 'call', 'children': ['129', '159']},{'id': '129', 'type': 'attribute', 'children': ['130', '158']},{'id': '130', 'type': 'call', 'children': ['131', '154']},{'id': '131', 'type': 'attribute', 'children': ['132', '152', '153']},{'id': '132', 'type': 'call', 'children': ['133', '142']},{'id': '133', 'type': 'attribute', 'children': ['134', '141']},{'id': '134', 'type': 'call', 'children': ['135', '138']},{'id': '135', 'type': 'attribute', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'multiply'},{'id': '138', 'type': 'argument_list', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'reshape'},{'id': '142', 'type': 'argument_list', 'children': ['143']},{'id': '143', 'type': 'tuple', 'children': ['144', '151']},{'id': '144', 'type': 'binary_operator', 'children': ['145', '150'], 'value': '//'},{'id': '145', 'type': 'subscript', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '149', 'type': 'integer', 'children': [], 'value': '0'},{'id': '150', 'type': 'integer', 'children': [], 'value': '3'},{'id': '151', 'type': 'integer', 'children': [], 'value': '3'},{'id': '152', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '154', 'type': 'argument_list', 'children': ['155']},{'id': '155', 'type': 'keyword_argument', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '157', 'type': 'integer', 'children': [], 'value': '0'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'squeeze'},{'id': '159', 'type': 'argument_list', 'children': []},{'id': '160', 'type': '()', 'children': ['161']},{'id': '161', 'type': 'binary_operator', 'children': ['162', '167'], 'value': '/'},{'id': '162', 'type': 'call', 'children': ['163', '166']},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '166', 'type': 'argument_list', 'children': []},{'id': '167', 'type': 'integer', 'children': [], 'value': '3'},{'id': '168', 'type': 'return_statement', 'children': ['169']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'ctr'} | def ctr_mass(geom, masses):
import numpy as np
from .base import safe_cast as scast
if len(geom.shape) != 1:
raise ValueError("Geometry is not a vector")
if len(masses.shape) != 1:
raise ValueError("Masses cannot be parsed as a vector")
if not geom.shape[0] % 3 == 0:
raise ValueError("Geometry is not length-3N")
if geom.shape[0] != 3*masses.shape[0] and geom.shape[0] != masses.shape[0]:
raise ValueError("Inconsistent geometry and masses vector lengths")
if geom.shape[0] == 3*masses.shape[0]:
masses = masses.repeat(3)
ctr = np.multiply(geom, masses).reshape((geom.shape[0]//3, 3)) \
.sum(axis=0).squeeze() / (masses.sum() / 3)
return ctr |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'inertia_tensor'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '6', 'type': 'block', 'children': ['7', '12', '20', '44', '55', '247']},{'id': '7', 'type': 'import_statement', 'children': ['8']},{'id': '8', 'type': 'aliased_import', 'children': ['9', '11']},{'id': '9', 'type': 'dotted_name', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '15', 'type': 'call', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'ctr_geom'},{'id': '17', 'type': 'argument_list', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '20', 'type': 'if_statement', 'children': ['21', '34']},{'id': '21', 'type': 'comparison_operator', 'children': ['22', '27'], 'value': '=='},{'id': '22', 'type': 'subscript', 'children': ['23', '26']},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '26', 'type': 'integer', 'children': [], 'value': '0'},{'id': '27', 'type': 'binary_operator', 'children': ['28', '29'], 'value': '*'},{'id': '28', 'type': 'integer', 'children': [], 'value': '3'},{'id': '29', 'type': 'subscript', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '33', 'type': 'integer', 'children': [], 'value': '0'},{'id': '34', 'type': 'block', 'children': ['35']},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'repeat'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'integer', 'children': [], 'value': '3'},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'tensor'},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'tuple', 'children': ['53', '54']},{'id': '53', 'type': 'integer', 'children': [], 'value': '3'},{'id': '54', 'type': 'integer', 'children': [], 'value': '3'},{'id': '55', 'type': 'for_statement', 'children': ['56', '57', '61']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'integer', 'children': [], 'value': '3'},{'id': '61', 'type': 'block', 'children': ['62']},{'id': '62', 'type': 'for_statement', 'children': ['63', '64', '69']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '66', 'type': 'argument_list', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '68', 'type': 'integer', 'children': [], 'value': '3'},{'id': '69', 'type': 'block', 'children': ['70']},{'id': '70', 'type': 'if_statement', 'children': ['71', '74', '150']},{'id': '71', 'type': 'comparison_operator', 'children': ['72', '73'], 'value': '=='},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '74', 'type': 'block', 'children': ['75', '124']},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'concatenate'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'list_comprehension', 'children': ['84', '112']},{'id': '84', 'type': 'binary_operator', 'children': ['85', '111'], 'value': '+'},{'id': '85', 'type': 'call', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'call', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '92', 'type': 'argument_list', 'children': ['93']},{'id': '93', 'type': 'call', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '95', 'type': 'argument_list', 'children': ['96', '102']},{'id': '96', 'type': 'lambda', 'children': ['97', '99']},{'id': '97', 'type': 'lambda_parameters', 'children': ['98']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '99', 'type': 'binary_operator', 'children': ['100', '101'], 'value': '%'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '101', 'type': 'integer', 'children': [], 'value': '3'},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '104', 'type': 'argument_list', 'children': ['105', '108']},{'id': '105', 'type': 'binary_operator', 'children': ['106', '107'], 'value': '+'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '107', 'type': 'integer', 'children': [], 'value': '1'},{'id': '108', 'type': 'binary_operator', 'children': ['109', '110'], 'value': '+'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '110', 'type': 'integer', 'children': [], 'value': '3'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '112', 'type': 'for_in_clause', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '114', 'type': 'call', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '116', 'type': 'argument_list', 'children': ['117', '118', '123']},{'id': '117', 'type': 'integer', 'children': [], 'value': '0'},{'id': '118', 'type': 'subscript', 'children': ['119', '122']},{'id': '119', 'type': 'attribute', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '122', 'type': 'integer', 'children': [], 'value': '0'},{'id': '123', 'type': 'integer', 'children': [], 'value': '3'},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'assignment', 'children': ['126', '130']},{'id': '126', 'type': 'subscript', 'children': ['127', '128', '129']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'tensor'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '130', 'type': 'call', 'children': ['131', '149']},{'id': '131', 'type': 'attribute', 'children': ['132', '148']},{'id': '132', 'type': 'call', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'multiply'},{'id': '136', 'type': 'argument_list', 'children': ['137', '145']},{'id': '137', 'type': 'call', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'square'},{'id': '141', 'type': 'argument_list', 'children': ['142']},{'id': '142', 'type': 'subscript', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '145', 'type': 'subscript', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '149', 'type': 'argument_list', 'children': []},{'id': '150', 'type': 'else_clause', 'children': ['151']},{'id': '151', 'type': 'block', 'children': ['152', '172', '192', '237']},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'assignment', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'ind_i'},{'id': '155', 'type': 'call', 'children': ['156', '159']},{'id': '156', 'type': 'attribute', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '159', 'type': 'argument_list', 'children': ['160']},{'id': '160', 'type': 'call', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '162', 'type': 'argument_list', 'children': ['163', '164', '171']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '164', 'type': 'binary_operator', 'children': ['165', '170'], 'value': '+'},{'id': '165', 'type': 'subscript', 'children': ['166', '169']},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '169', 'type': 'integer', 'children': [], 'value': '0'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '171', 'type': 'integer', 'children': [], 'value': '3'},{'id': '172', 'type': 'expression_statement', 'children': ['173']},{'id': '173', 'type': 'assignment', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'ind_j'},{'id': '175', 'type': 'call', 'children': ['176', '179']},{'id': '176', 'type': 'attribute', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '179', 'type': 'argument_list', 'children': ['180']},{'id': '180', 'type': 'call', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '182', 'type': 'argument_list', 'children': ['183', '184', '191']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '184', 'type': 'binary_operator', 'children': ['185', '190'], 'value': '+'},{'id': '185', 'type': 'subscript', 'children': ['186', '189']},{'id': '186', 'type': 'attribute', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '189', 'type': 'integer', 'children': [], 'value': '0'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '191', 'type': 'integer', 'children': [], 'value': '3'},{'id': '192', 'type': 'expression_statement', 'children': ['193']},{'id': '193', 'type': 'assignment', 'children': ['194', '198']},{'id': '194', 'type': 'subscript', 'children': ['195', '196', '197']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'tensor'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '198', 'type': 'binary_operator', 'children': ['199', '235'], 'value': '*'},{'id': '199', 'type': 'call', 'children': ['200', '234']},{'id': '200', 'type': 'attribute', 'children': ['201', '233']},{'id': '201', 'type': 'call', 'children': ['202', '205']},{'id': '202', 'type': 'attribute', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'multiply'},{'id': '205', 'type': 'argument_list', 'children': ['206', '222']},{'id': '206', 'type': 'call', 'children': ['207', '210']},{'id': '207', 'type': 'attribute', 'children': ['208', '209']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'sqrt'},{'id': '210', 'type': 'argument_list', 'children': ['211']},{'id': '211', 'type': 'call', 'children': ['212', '215']},{'id': '212', 'type': 'attribute', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'multiply'},{'id': '215', 'type': 'argument_list', 'children': ['216', '219']},{'id': '216', 'type': 'subscript', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'ind_i'},{'id': '219', 'type': 'subscript', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'ind_j'},{'id': '222', 'type': 'call', 'children': ['223', '226']},{'id': '223', 'type': 'attribute', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'multiply'},{'id': '226', 'type': 'argument_list', 'children': ['227', '230']},{'id': '227', 'type': 'subscript', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'ind_i'},{'id': '230', 'type': 'subscript', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'ind_j'},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '234', 'type': 'argument_list', 'children': []},{'id': '235', 'type': 'unary_operator', 'children': ['236'], 'value': '-'},{'id': '236', 'type': 'integer', 'children': [], 'value': '1'},{'id': '237', 'type': 'expression_statement', 'children': ['238']},{'id': '238', 'type': 'assignment', 'children': ['239', '243']},{'id': '239', 'type': 'subscript', 'children': ['240', '241', '242']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'tensor'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '243', 'type': 'subscript', 'children': ['244', '245', '246']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'tensor'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '247', 'type': 'return_statement', 'children': ['248']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'tensor'} | def inertia_tensor(geom, masses):
import numpy as np
geom = ctr_geom(geom, masses)
if geom.shape[0] == 3*masses.shape[0]:
masses = masses.repeat(3)
tensor = np.zeros((3,3))
for i in range(3):
for j in range(i,3):
if i == j:
ind = np.concatenate([np.array(list(map(lambda v: v % 3,
range(i+1, i+3)))) + o for o in
range(0,geom.shape[0],3)])
tensor[i,i] = np.multiply(np.square(geom[ind]),
masses[ind]).sum()
else:
ind_i = np.array(range(i,geom.shape[0]+i,3))
ind_j = np.array(range(j,geom.shape[0]+j,3))
tensor[i,j] = np.multiply(
np.sqrt(np.multiply(masses[ind_i], masses[ind_j])) ,
np.multiply(geom[ind_i], geom[ind_j]) ).sum() * -1
tensor[j,i] = tensor[i,j]
return tensor |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'rot_consts'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': '_EURC'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'INV_INERTIA'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'on_tol'},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': '_DEF'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'ORTHONORM_TOL'},{'id': '16', 'type': 'block', 'children': ['17', '22', '39', '55', '67', '101', '336']},{'id': '17', 'type': 'import_statement', 'children': ['18']},{'id': '18', 'type': 'aliased_import', 'children': ['19', '21']},{'id': '19', 'type': 'dotted_name', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '22', 'type': 'import_from_statement', 'children': ['23', '27', '31', '35', '37']},{'id': '23', 'type': 'relative_import', 'children': ['24', '25']},{'id': '24', 'type': 'import_prefix', 'children': []},{'id': '25', 'type': 'dotted_name', 'children': ['26']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '27', 'type': 'aliased_import', 'children': ['28', '30']},{'id': '28', 'type': 'dotted_name', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'EnumTopType'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'ETT'},{'id': '31', 'type': 'aliased_import', 'children': ['32', '34']},{'id': '32', 'type': 'dotted_name', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'EnumUnitsRotConst'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '35', 'type': 'dotted_name', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '37', 'type': 'dotted_name', 'children': ['38']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '39', 'type': 'if_statement', 'children': ['40', '44']},{'id': '40', 'type': 'not_operator', 'children': ['41']},{'id': '41', 'type': 'comparison_operator', 'children': ['42', '43'], 'value': 'in'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '44', 'type': 'block', 'children': ['45']},{'id': '45', 'type': 'raise_statement', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'string', 'children': [], 'value': '"\'{0}\' is not a valid units value"'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '61']},{'id': '57', 'type': 'pattern_list', 'children': ['58', '59', '60']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'top'},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'principals'},{'id': '63', 'type': 'argument_list', 'children': ['64', '65', '66']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'on_tol'},{'id': '67', 'type': 'if_statement', 'children': ['68', '73', '86']},{'id': '68', 'type': 'comparison_operator', 'children': ['69', '70'], 'value': '=='},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'top'},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'ETT'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'ATOM'},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '77', 'type': 'call', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'repeat'},{'id': '81', 'type': 'argument_list', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'ZERO_MOMENT_TOL'},{'id': '85', 'type': 'integer', 'children': [], 'value': '3'},{'id': '86', 'type': 'elif_clause', 'children': ['87', '92']},{'id': '87', 'type': 'comparison_operator', 'children': ['88', '89'], 'value': '=='},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'top'},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'ETT'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'LINEAR'},{'id': '92', 'type': 'block', 'children': ['93']},{'id': '93', 'type': 'expression_statement', 'children': ['94']},{'id': '94', 'type': 'assignment', 'children': ['95', '98']},{'id': '95', 'type': 'subscript', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '97', 'type': 'integer', 'children': [], 'value': '0'},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'ZERO_MOMENT_TOL'},{'id': '101', 'type': 'if_statement', 'children': ['102', '107', '117', '139', '165', '191', '222', '255', '289', '329']},{'id': '102', 'type': 'comparison_operator', 'children': ['103', '104'], 'value': '=='},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'INV_INERTIA'},{'id': '107', 'type': 'block', 'children': ['108']},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'assignment', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'rc'},{'id': '111', 'type': 'binary_operator', 'children': ['112', '113'], 'value': '/'},{'id': '112', 'type': 'float', 'children': [], 'value': '1.0'},{'id': '113', 'type': '()', 'children': ['114']},{'id': '114', 'type': 'binary_operator', 'children': ['115', '116'], 'value': '*'},{'id': '115', 'type': 'float', 'children': [], 'value': '2.0'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '117', 'type': 'elif_clause', 'children': ['118', '123']},{'id': '118', 'type': 'comparison_operator', 'children': ['119', '120'], 'value': '=='},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'ANGFREQ_ATOMIC'},{'id': '123', 'type': 'block', 'children': ['124']},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'assignment', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'rc'},{'id': '127', 'type': 'binary_operator', 'children': ['128', '131'], 'value': '/'},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'PLANCK_BAR'},{'id': '131', 'type': '()', 'children': ['132']},{'id': '132', 'type': 'binary_operator', 'children': ['133', '136'], 'value': '*'},{'id': '133', 'type': 'binary_operator', 'children': ['134', '135'], 'value': '*'},{'id': '134', 'type': 'float', 'children': [], 'value': '2.0'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'ME_PER_AMU'},{'id': '139', 'type': 'elif_clause', 'children': ['140', '145']},{'id': '140', 'type': 'comparison_operator', 'children': ['141', '142'], 'value': '=='},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'ANGFREQ_SECS'},{'id': '145', 'type': 'block', 'children': ['146']},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'assignment', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'rc'},{'id': '149', 'type': 'binary_operator', 'children': ['150', '162'], 'value': '/'},{'id': '150', 'type': 'binary_operator', 'children': ['151', '154'], 'value': '/'},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'PLANCK_BAR'},{'id': '154', 'type': '()', 'children': ['155']},{'id': '155', 'type': 'binary_operator', 'children': ['156', '159'], 'value': '*'},{'id': '156', 'type': 'binary_operator', 'children': ['157', '158'], 'value': '*'},{'id': '157', 'type': 'float', 'children': [], 'value': '2.0'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'ME_PER_AMU'},{'id': '162', 'type': 'attribute', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'SEC_PER_TA'},{'id': '165', 'type': 'elif_clause', 'children': ['166', '171']},{'id': '166', 'type': 'comparison_operator', 'children': ['167', '168'], 'value': '=='},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '168', 'type': 'attribute', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'CYCFREQ_ATOMIC'},{'id': '171', 'type': 'block', 'children': ['172']},{'id': '172', 'type': 'expression_statement', 'children': ['173']},{'id': '173', 'type': 'assignment', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'rc'},{'id': '175', 'type': 'binary_operator', 'children': ['176', '179'], 'value': '/'},{'id': '176', 'type': 'attribute', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'PLANCK_BAR'},{'id': '179', 'type': '()', 'children': ['180']},{'id': '180', 'type': 'binary_operator', 'children': ['181', '188'], 'value': '*'},{'id': '181', 'type': 'binary_operator', 'children': ['182', '187'], 'value': '*'},{'id': '182', 'type': 'binary_operator', 'children': ['183', '184'], 'value': '*'},{'id': '183', 'type': 'float', 'children': [], 'value': '4.0'},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '188', 'type': 'attribute', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'ME_PER_AMU'},{'id': '191', 'type': 'elif_clause', 'children': ['192', '197']},{'id': '192', 'type': 'comparison_operator', 'children': ['193', '194'], 'value': '=='},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '194', 'type': 'attribute', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'CYCFREQ_HZ'},{'id': '197', 'type': 'block', 'children': ['198']},{'id': '198', 'type': 'expression_statement', 'children': ['199']},{'id': '199', 'type': 'assignment', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'rc'},{'id': '201', 'type': 'binary_operator', 'children': ['202', '218', '219'], 'value': '/'},{'id': '202', 'type': 'binary_operator', 'children': ['203', '206'], 'value': '/'},{'id': '203', 'type': 'attribute', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'PLANCK_BAR'},{'id': '206', 'type': '()', 'children': ['207']},{'id': '207', 'type': 'binary_operator', 'children': ['208', '215'], 'value': '*'},{'id': '208', 'type': 'binary_operator', 'children': ['209', '214'], 'value': '*'},{'id': '209', 'type': 'binary_operator', 'children': ['210', '211'], 'value': '*'},{'id': '210', 'type': 'float', 'children': [], 'value': '4.0'},{'id': '211', 'type': 'attribute', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '215', 'type': 'attribute', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'ME_PER_AMU'},{'id': '218', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '219', 'type': 'attribute', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'SEC_PER_TA'},{'id': '222', 'type': 'elif_clause', 'children': ['223', '228']},{'id': '223', 'type': 'comparison_operator', 'children': ['224', '225'], 'value': '=='},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '225', 'type': 'attribute', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'CYCFREQ_MHZ'},{'id': '228', 'type': 'block', 'children': ['229']},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'assignment', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'rc'},{'id': '232', 'type': 'binary_operator', 'children': ['233', '254'], 'value': '/'},{'id': '233', 'type': 'binary_operator', 'children': ['234', '250', '251'], 'value': '/'},{'id': '234', 'type': 'binary_operator', 'children': ['235', '238'], 'value': '/'},{'id': '235', 'type': 'attribute', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'PLANCK_BAR'},{'id': '238', 'type': '()', 'children': ['239']},{'id': '239', 'type': 'binary_operator', 'children': ['240', '247'], 'value': '*'},{'id': '240', 'type': 'binary_operator', 'children': ['241', '246'], 'value': '*'},{'id': '241', 'type': 'binary_operator', 'children': ['242', '243'], 'value': '*'},{'id': '242', 'type': 'float', 'children': [], 'value': '4.0'},{'id': '243', 'type': 'attribute', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '247', 'type': 'attribute', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'ME_PER_AMU'},{'id': '250', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '251', 'type': 'attribute', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'SEC_PER_TA'},{'id': '254', 'type': 'float', 'children': [], 'value': '1.0e6'},{'id': '255', 'type': 'elif_clause', 'children': ['256', '261']},{'id': '256', 'type': 'comparison_operator', 'children': ['257', '258'], 'value': '=='},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '258', 'type': 'attribute', 'children': ['259', '260']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'WAVENUM_ATOMIC'},{'id': '261', 'type': 'block', 'children': ['262']},{'id': '262', 'type': 'expression_statement', 'children': ['263']},{'id': '263', 'type': 'assignment', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'rc'},{'id': '265', 'type': 'binary_operator', 'children': ['266', '276', '277'], 'value': '/'},{'id': '266', 'type': 'binary_operator', 'children': ['267', '270'], 'value': '/'},{'id': '267', 'type': 'attribute', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'PLANCK'},{'id': '270', 'type': '()', 'children': ['271']},{'id': '271', 'type': 'binary_operator', 'children': ['272', '273'], 'value': '*'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '273', 'type': 'attribute', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'ME_PER_AMU'},{'id': '276', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '277', 'type': '()', 'children': ['278']},{'id': '278', 'type': 'binary_operator', 'children': ['279', '286'], 'value': '*'},{'id': '279', 'type': 'binary_operator', 'children': ['280', '281'], 'value': '*'},{'id': '280', 'type': 'float', 'children': [], 'value': '8.0'},{'id': '281', 'type': 'binary_operator', 'children': ['282', '285'], 'value': '**'},{'id': '282', 'type': 'attribute', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '285', 'type': 'float', 'children': [], 'value': '2.0'},{'id': '286', 'type': 'attribute', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'LIGHT_SPEED'},{'id': '289', 'type': 'elif_clause', 'children': ['290', '295']},{'id': '290', 'type': 'comparison_operator', 'children': ['291', '292'], 'value': '=='},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'units'},{'id': '292', 'type': 'attribute', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'EURC'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'WAVENUM_CM'},{'id': '295', 'type': 'block', 'children': ['296']},{'id': '296', 'type': 'expression_statement', 'children': ['297']},{'id': '297', 'type': 'assignment', 'children': ['298', '299']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'rc'},{'id': '299', 'type': 'binary_operator', 'children': ['300', '328'], 'value': '*'},{'id': '300', 'type': 'binary_operator', 'children': ['301', '311', '312'], 'value': '/'},{'id': '301', 'type': 'binary_operator', 'children': ['302', '305'], 'value': '/'},{'id': '302', 'type': 'attribute', 'children': ['303', '304']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'PLANCK'},{'id': '305', 'type': '()', 'children': ['306']},{'id': '306', 'type': 'binary_operator', 'children': ['307', '308'], 'value': '*'},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'mom'},{'id': '308', 'type': 'attribute', 'children': ['309', '310']},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'ME_PER_AMU'},{'id': '311', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '312', 'type': '()', 'children': ['313']},{'id': '313', 'type': 'binary_operator', 'children': ['314', '325'], 'value': '*'},{'id': '314', 'type': 'binary_operator', 'children': ['315', '322'], 'value': '*'},{'id': '315', 'type': 'binary_operator', 'children': ['316', '317'], 'value': '*'},{'id': '316', 'type': 'float', 'children': [], 'value': '8.0'},{'id': '317', 'type': 'binary_operator', 'children': ['318', '321'], 'value': '**'},{'id': '318', 'type': 'attribute', 'children': ['319', '320']},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '321', 'type': 'float', 'children': [], 'value': '2.0'},{'id': '322', 'type': 'attribute', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'LIGHT_SPEED'},{'id': '325', 'type': 'attribute', 'children': ['326', '327']},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'ANG_PER_BOHR'},{'id': '328', 'type': 'float', 'children': [], 'value': '1.0e8'},{'id': '329', 'type': 'else_clause', 'children': ['330']},{'id': '330', 'type': 'block', 'children': ['331']},{'id': '331', 'type': 'raise_statement', 'children': ['332']},{'id': '332', 'type': 'call', 'children': ['333', '334']},{'id': '333', 'type': 'identifier', 'children': [], 'value': 'NotImplementedError'},{'id': '334', 'type': 'argument_list', 'children': ['335']},{'id': '335', 'type': 'string', 'children': [], 'value': '"Units conversion not yet implemented."'},{'id': '336', 'type': 'return_statement', 'children': ['337']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'rc'} | def rot_consts(geom, masses, units=_EURC.INV_INERTIA, on_tol=_DEF.ORTHONORM_TOL):
import numpy as np
from ..const import EnumTopType as ETT, EnumUnitsRotConst as EURC, PRM, PHYS
if not units in EURC:
raise ValueError("'{0}' is not a valid units value".format(units))
mom, ax, top = principals(geom, masses, on_tol)
if top == ETT.ATOM:
mom = np.repeat(PRM.ZERO_MOMENT_TOL, 3)
elif top == ETT.LINEAR:
mom[0] = PRM.ZERO_MOMENT_TOL
if units == EURC.INV_INERTIA:
rc = 1.0 / (2.0 * mom)
elif units == EURC.ANGFREQ_ATOMIC:
rc = PHYS.PLANCK_BAR / (2.0 * mom * PHYS.ME_PER_AMU)
elif units == EURC.ANGFREQ_SECS:
rc = PHYS.PLANCK_BAR / (2.0 * mom * PHYS.ME_PER_AMU) / PHYS.SEC_PER_TA
elif units == EURC.CYCFREQ_ATOMIC:
rc = PHYS.PLANCK_BAR / (4.0 * np.pi * mom * PHYS.ME_PER_AMU)
elif units == EURC.CYCFREQ_HZ:
rc = PHYS.PLANCK_BAR / (4.0 * np.pi * mom * PHYS.ME_PER_AMU) / \
PHYS.SEC_PER_TA
elif units == EURC.CYCFREQ_MHZ:
rc = PHYS.PLANCK_BAR / (4.0 * np.pi * mom * PHYS.ME_PER_AMU) / \
PHYS.SEC_PER_TA / 1.0e6
elif units == EURC.WAVENUM_ATOMIC:
rc = PHYS.PLANCK / (mom * PHYS.ME_PER_AMU) / \
(8.0 * np.pi**2.0 * PHYS.LIGHT_SPEED)
elif units == EURC.WAVENUM_CM:
rc = PHYS.PLANCK / (mom * PHYS.ME_PER_AMU) / \
(8.0 * np.pi**2.0 * PHYS.LIGHT_SPEED * PHYS.ANG_PER_BOHR) * 1.0e8
else:
raise NotImplementedError("Units conversion not yet implemented.")
return rc |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_fadn_orth'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '6', 'type': 'block', 'children': ['7', '12', '19', '26', '33', '42', '69', '83', '100', '111']},{'id': '7', 'type': 'import_statement', 'children': ['8']},{'id': '8', 'type': 'aliased_import', 'children': ['9', '11']},{'id': '9', 'type': 'dotted_name', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '12', 'type': 'import_from_statement', 'children': ['13', '15']},{'id': '13', 'type': 'dotted_name', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '15', 'type': 'aliased_import', 'children': ['16', '18']},{'id': '16', 'type': 'dotted_name', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'linalg'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '19', 'type': 'import_from_statement', 'children': ['20', '24']},{'id': '20', 'type': 'relative_import', 'children': ['21', '22']},{'id': '21', 'type': 'import_prefix', 'children': []},{'id': '22', 'type': 'dotted_name', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '24', 'type': 'dotted_name', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '26', 'type': 'import_from_statement', 'children': ['27', '31']},{'id': '27', 'type': 'relative_import', 'children': ['28', '29']},{'id': '28', 'type': 'import_prefix', 'children': []},{'id': '29', 'type': 'dotted_name', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '31', 'type': 'dotted_name', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'InertiaError'},{'id': '33', 'type': 'import_from_statement', 'children': ['34', '38']},{'id': '34', 'type': 'relative_import', 'children': ['35', '36']},{'id': '35', 'type': 'import_prefix', 'children': []},{'id': '36', 'type': 'dotted_name', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'vector'},{'id': '38', 'type': 'aliased_import', 'children': ['39', '41']},{'id': '39', 'type': 'dotted_name', 'children': ['40']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'orthonorm_check'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'onchk'},{'id': '42', 'type': 'if_statement', 'children': ['43', '63']},{'id': '43', 'type': 'not_operator', 'children': ['44']},{'id': '44', 'type': '()', 'children': ['45']},{'id': '45', 'type': 'boolean_operator', 'children': ['46', '54'], 'value': 'and'},{'id': '46', 'type': 'comparison_operator', 'children': ['47', '53'], 'value': '=='},{'id': '47', 'type': 'call', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '53', 'type': 'integer', 'children': [], 'value': '1'},{'id': '54', 'type': 'comparison_operator', 'children': ['55', '62'], 'value': '=='},{'id': '55', 'type': 'binary_operator', 'children': ['56', '61'], 'value': '%'},{'id': '56', 'type': 'subscript', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '60', 'type': 'integer', 'children': [], 'value': '0'},{'id': '61', 'type': 'integer', 'children': [], 'value': '3'},{'id': '62', 'type': 'integer', 'children': [], 'value': '0'},{'id': '63', 'type': 'block', 'children': ['64']},{'id': '64', 'type': 'raise_statement', 'children': ['65']},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'string', 'children': [], 'value': '"Geometry is not length 3N"'},{'id': '69', 'type': 'if_statement', 'children': ['70', '77']},{'id': '70', 'type': 'not_operator', 'children': ['71']},{'id': '71', 'type': 'comparison_operator', 'children': ['72', '75'], 'value': '=='},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '75', 'type': 'tuple', 'children': ['76']},{'id': '76', 'type': 'integer', 'children': [], 'value': '3'},{'id': '77', 'type': 'block', 'children': ['78']},{'id': '78', 'type': 'raise_statement', 'children': ['79']},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'string', 'children': [], 'value': '"Reference vector is not length 3"'},{'id': '83', 'type': 'if_statement', 'children': ['84', '94']},{'id': '84', 'type': 'comparison_operator', 'children': ['85', '91'], 'value': '<'},{'id': '85', 'type': 'call', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'ZERO_VEC_TOL'},{'id': '94', 'type': 'block', 'children': ['95']},{'id': '95', 'type': 'raise_statement', 'children': ['96']},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'string', 'children': [], 'value': '"Reference vector norm is too small"'},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'assignment', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '103', 'type': 'binary_operator', 'children': ['104', '105'], 'value': '/'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '105', 'type': 'call', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '109', 'type': 'argument_list', 'children': ['110']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '111', 'type': 'for_statement', 'children': ['112', '113', '127', '182']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '113', 'type': 'call', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'reshape'},{'id': '117', 'type': 'argument_list', 'children': ['118']},{'id': '118', 'type': 'tuple', 'children': ['119', '126']},{'id': '119', 'type': 'binary_operator', 'children': ['120', '125'], 'value': '//'},{'id': '120', 'type': 'subscript', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '124', 'type': 'integer', 'children': [], 'value': '0'},{'id': '125', 'type': 'integer', 'children': [], 'value': '3'},{'id': '126', 'type': 'integer', 'children': [], 'value': '3'},{'id': '127', 'type': 'block', 'children': ['128']},{'id': '128', 'type': 'if_statement', 'children': ['129', '168']},{'id': '129', 'type': 'boolean_operator', 'children': ['130', '140'], 'value': 'and'},{'id': '130', 'type': 'comparison_operator', 'children': ['131', '137'], 'value': '>='},{'id': '131', 'type': 'call', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'ZERO_VEC_TOL'},{'id': '140', 'type': 'not_operator', 'children': ['141']},{'id': '141', 'type': 'subscript', 'children': ['142', '167']},{'id': '142', 'type': 'call', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'onchk'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'call', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'column_stack'},{'id': '149', 'type': 'argument_list', 'children': ['150']},{'id': '150', 'type': 'tuple', 'children': ['151', '159']},{'id': '151', 'type': 'binary_operator', 'children': ['152', '153'], 'value': '/'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '153', 'type': 'call', 'children': ['154', '157']},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '157', 'type': 'argument_list', 'children': ['158']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '159', 'type': 'binary_operator', 'children': ['160', '161'], 'value': '/'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '161', 'type': 'call', 'children': ['162', '165']},{'id': '162', 'type': 'attribute', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '165', 'type': 'argument_list', 'children': ['166']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '167', 'type': 'integer', 'children': [], 'value': '0'},{'id': '168', 'type': 'block', 'children': ['169', '180']},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'assignment', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'out_vec'},{'id': '172', 'type': 'binary_operator', 'children': ['173', '174'], 'value': '/'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '174', 'type': 'call', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '178', 'type': 'argument_list', 'children': ['179']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '180', 'type': 'return_statement', 'children': ['181']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'out_vec'},{'id': '182', 'type': 'else_clause', 'children': ['183']},{'id': '183', 'type': 'block', 'children': ['184']},{'id': '184', 'type': 'raise_statement', 'children': ['185']},{'id': '185', 'type': 'call', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'InertiaError'},{'id': '187', 'type': 'argument_list', 'children': ['188', '191', '192']},{'id': '188', 'type': 'attribute', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'InertiaError'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'BAD_GEOM'},{'id': '191', 'type': 'string', 'children': [], 'value': '"No suitable atomic displacement found"'},{'id': '192', 'type': 'string', 'children': [], 'value': '""'} | def _fadn_orth(vec, geom):
import numpy as np
from scipy import linalg as spla
from ..const import PRM
from ..error import InertiaError
from .vector import orthonorm_check as onchk
if not (len(geom.shape) == 1 and geom.shape[0] % 3 == 0):
raise ValueError("Geometry is not length 3N")
if not vec.shape == (3,):
raise ValueError("Reference vector is not length 3")
if spla.norm(vec) < PRM.ZERO_VEC_TOL:
raise ValueError("Reference vector norm is too small")
vec = vec / spla.norm(vec)
for disp in geom.reshape((geom.shape[0]//3, 3)):
if spla.norm(disp) >= PRM.ZERO_VEC_TOL and not onchk(
np.column_stack((disp / spla.norm(disp),
vec / spla.norm(vec))))[0]:
out_vec = disp / spla.norm(disp)
return out_vec
else:
raise InertiaError(InertiaError.BAD_GEOM,
"No suitable atomic displacement found", "") |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_fadn_par'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '6', 'type': 'block', 'children': ['7', '12', '19', '26', '33', '42', '69', '83', '100', '111', '176']},{'id': '7', 'type': 'import_statement', 'children': ['8']},{'id': '8', 'type': 'aliased_import', 'children': ['9', '11']},{'id': '9', 'type': 'dotted_name', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '12', 'type': 'import_from_statement', 'children': ['13', '15']},{'id': '13', 'type': 'dotted_name', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '15', 'type': 'aliased_import', 'children': ['16', '18']},{'id': '16', 'type': 'dotted_name', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'linalg'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '19', 'type': 'import_from_statement', 'children': ['20', '24']},{'id': '20', 'type': 'relative_import', 'children': ['21', '22']},{'id': '21', 'type': 'import_prefix', 'children': []},{'id': '22', 'type': 'dotted_name', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '24', 'type': 'dotted_name', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '26', 'type': 'import_from_statement', 'children': ['27', '31']},{'id': '27', 'type': 'relative_import', 'children': ['28', '29']},{'id': '28', 'type': 'import_prefix', 'children': []},{'id': '29', 'type': 'dotted_name', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '31', 'type': 'dotted_name', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'InertiaError'},{'id': '33', 'type': 'import_from_statement', 'children': ['34', '38']},{'id': '34', 'type': 'relative_import', 'children': ['35', '36']},{'id': '35', 'type': 'import_prefix', 'children': []},{'id': '36', 'type': 'dotted_name', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'vector'},{'id': '38', 'type': 'aliased_import', 'children': ['39', '41']},{'id': '39', 'type': 'dotted_name', 'children': ['40']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'parallel_check'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'parchk'},{'id': '42', 'type': 'if_statement', 'children': ['43', '63']},{'id': '43', 'type': 'not_operator', 'children': ['44']},{'id': '44', 'type': '()', 'children': ['45']},{'id': '45', 'type': 'boolean_operator', 'children': ['46', '54'], 'value': 'and'},{'id': '46', 'type': 'comparison_operator', 'children': ['47', '53'], 'value': '=='},{'id': '47', 'type': 'call', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '53', 'type': 'integer', 'children': [], 'value': '1'},{'id': '54', 'type': 'comparison_operator', 'children': ['55', '62'], 'value': '=='},{'id': '55', 'type': 'binary_operator', 'children': ['56', '61'], 'value': '%'},{'id': '56', 'type': 'subscript', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '60', 'type': 'integer', 'children': [], 'value': '0'},{'id': '61', 'type': 'integer', 'children': [], 'value': '3'},{'id': '62', 'type': 'integer', 'children': [], 'value': '0'},{'id': '63', 'type': 'block', 'children': ['64']},{'id': '64', 'type': 'raise_statement', 'children': ['65']},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'string', 'children': [], 'value': '"Geometry is not length 3N"'},{'id': '69', 'type': 'if_statement', 'children': ['70', '77']},{'id': '70', 'type': 'not_operator', 'children': ['71']},{'id': '71', 'type': 'comparison_operator', 'children': ['72', '75'], 'value': '=='},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '75', 'type': 'tuple', 'children': ['76']},{'id': '76', 'type': 'integer', 'children': [], 'value': '3'},{'id': '77', 'type': 'block', 'children': ['78']},{'id': '78', 'type': 'raise_statement', 'children': ['79']},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'string', 'children': [], 'value': '"Reference vector is not length 3"'},{'id': '83', 'type': 'if_statement', 'children': ['84', '94']},{'id': '84', 'type': 'comparison_operator', 'children': ['85', '91'], 'value': '<'},{'id': '85', 'type': 'call', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'ZERO_VEC_TOL'},{'id': '94', 'type': 'block', 'children': ['95']},{'id': '95', 'type': 'raise_statement', 'children': ['96']},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'string', 'children': [], 'value': '"Reference vector norm is too small"'},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'assignment', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '103', 'type': 'binary_operator', 'children': ['104', '105'], 'value': '/'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '105', 'type': 'call', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '109', 'type': 'argument_list', 'children': ['110']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '111', 'type': 'for_statement', 'children': ['112', '113', '127', '165']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '113', 'type': 'call', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'reshape'},{'id': '117', 'type': 'argument_list', 'children': ['118']},{'id': '118', 'type': 'tuple', 'children': ['119', '126']},{'id': '119', 'type': 'binary_operator', 'children': ['120', '125'], 'value': '//'},{'id': '120', 'type': 'subscript', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'geom'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '124', 'type': 'integer', 'children': [], 'value': '0'},{'id': '125', 'type': 'integer', 'children': [], 'value': '3'},{'id': '126', 'type': 'integer', 'children': [], 'value': '3'},{'id': '127', 'type': 'block', 'children': ['128']},{'id': '128', 'type': 'if_statement', 'children': ['129', '152']},{'id': '129', 'type': 'boolean_operator', 'children': ['130', '140', '141'], 'value': 'and'},{'id': '130', 'type': 'comparison_operator', 'children': ['131', '137'], 'value': '>='},{'id': '131', 'type': 'call', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'ZERO_VEC_TOL'},{'id': '140', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '141', 'type': 'not_operator', 'children': ['142']},{'id': '142', 'type': 'call', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'parchk'},{'id': '144', 'type': 'argument_list', 'children': ['145', '151']},{'id': '145', 'type': 'call', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'reshape'},{'id': '149', 'type': 'argument_list', 'children': ['150']},{'id': '150', 'type': 'integer', 'children': [], 'value': '3'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'vec'},{'id': '152', 'type': 'block', 'children': ['153', '164']},{'id': '153', 'type': 'expression_statement', 'children': ['154']},{'id': '154', 'type': 'assignment', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'out_vec'},{'id': '156', 'type': 'binary_operator', 'children': ['157', '158'], 'value': '/'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '158', 'type': 'call', 'children': ['159', '162']},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '162', 'type': 'argument_list', 'children': ['163']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '164', 'type': 'break_statement', 'children': []},{'id': '165', 'type': 'else_clause', 'children': ['166']},{'id': '166', 'type': 'block', 'children': ['167']},{'id': '167', 'type': 'raise_statement', 'children': ['168']},{'id': '168', 'type': 'call', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'InertiaError'},{'id': '170', 'type': 'argument_list', 'children': ['171', '174', '175']},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'InertiaError'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'BAD_GEOM'},{'id': '174', 'type': 'string', 'children': [], 'value': '"Linear molecule, no non-parallel displacement"'},{'id': '175', 'type': 'string', 'children': [], 'value': '""'},{'id': '176', 'type': 'return_statement', 'children': ['177']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'out_vec'} | def _fadn_par(vec, geom):
import numpy as np
from scipy import linalg as spla
from ..const import PRM
from ..error import InertiaError
from .vector import parallel_check as parchk
if not (len(geom.shape) == 1 and geom.shape[0] % 3 == 0):
raise ValueError("Geometry is not length 3N")
if not vec.shape == (3,):
raise ValueError("Reference vector is not length 3")
if spla.norm(vec) < PRM.ZERO_VEC_TOL:
raise ValueError("Reference vector norm is too small")
vec = vec / spla.norm(vec)
for disp in geom.reshape((geom.shape[0]//3, 3)):
if spla.norm(disp) >= PRM.ZERO_VEC_TOL and \
not parchk(disp.reshape(3), vec):
out_vec = disp / spla.norm(disp)
break
else:
raise InertiaError(InertiaError.BAD_GEOM,
"Linear molecule, no non-parallel displacement", "")
return out_vec |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'reference_contexts_for_variants'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'variants'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'context_size'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'block', 'children': ['10', '16', '37']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '15', 'type': 'argument_list', 'children': []},{'id': '16', 'type': 'for_statement', 'children': ['17', '18', '19']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'variants'},{'id': '19', 'type': 'block', 'children': ['20']},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '25']},{'id': '22', 'type': 'subscript', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'reference_contexts_for_variant'},{'id': '27', 'type': 'argument_list', 'children': ['28', '31', '34']},{'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'context_size'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'context_size'},{'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '37', 'type': 'return_statement', 'children': ['38']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'result'} | def reference_contexts_for_variants(
variants,
context_size,
transcript_id_whitelist=None):
result = OrderedDict()
for variant in variants:
result[variant] = reference_contexts_for_variant(
variant=variant,
context_size=context_size,
transcript_id_whitelist=transcript_id_whitelist)
return result |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'pack_tups'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'list_splat_pattern', 'children': ['5']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '6', 'type': 'block', 'children': ['7', '12', '16', '21', '26', '39', '54', '73', '91', '98', '121', '129', '162', '175']},{'id': '7', 'type': 'import_statement', 'children': ['8']},{'id': '8', 'type': 'aliased_import', 'children': ['9', '11']},{'id': '9', 'type': 'dotted_name', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '15', 'type': 'False', 'children': []},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'NOT_ITER'},{'id': '19', 'type': 'unary_operator', 'children': ['20'], 'value': '-'},{'id': '20', 'type': 'integer', 'children': [], 'value': '1'},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'UNINIT_VAL'},{'id': '24', 'type': 'unary_operator', 'children': ['25'], 'value': '-'},{'id': '25', 'type': 'integer', 'children': [], 'value': '1'},{'id': '26', 'type': 'if_statement', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'string', 'children': [], 'value': '"args = {0}"'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '39', 'type': 'class_definition', 'children': ['40', '41', '43']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'StrNoIter'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '43', 'type': 'block', 'children': ['44']},{'id': '44', 'type': 'function_definition', 'children': ['45', '46', '48']},{'id': '45', 'type': 'function_name', 'children': [], 'value': '__iter__'},{'id': '46', 'type': 'parameters', 'children': ['47']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '48', 'type': 'block', 'children': ['49']},{'id': '49', 'type': 'raise_statement', 'children': ['50']},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'NotImplementedError'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'string', 'children': [], 'value': '"Non-iterable string"'},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'mod_args'},{'id': '57', 'type': 'list_comprehension', 'children': ['58', '70']},{'id': '58', 'type': '()', 'children': ['59']},{'id': '59', 'type': 'conditional_expression', 'children': ['60', '64', '69'], 'value': 'if'},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'StrNoIter'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '66', 'type': 'argument_list', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '70', 'type': 'for_in_clause', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '73', 'type': 'expression_statement', 'children': ['74']},{'id': '74', 'type': 'assignment', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'iterlens'},{'id': '76', 'type': 'list_comprehension', 'children': ['77', '88']},{'id': '77', 'type': '()', 'children': ['78']},{'id': '78', 'type': 'conditional_expression', 'children': ['79', '83', '87'], 'value': 'if'},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'NOT_ITER'},{'id': '88', 'type': 'for_in_clause', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'mod_args'},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'maxiter'},{'id': '94', 'type': 'call', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '96', 'type': 'argument_list', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'iterlens'},{'id': '98', 'type': 'if_statement', 'children': ['99', '115']},{'id': '99', 'type': 'not_operator', 'children': ['100']},{'id': '100', 'type': 'call', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '102', 'type': 'argument_list', 'children': ['103']},{'id': '103', 'type': 'call', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '105', 'type': 'argument_list', 'children': ['106', '114']},{'id': '106', 'type': 'lambda', 'children': ['107', '109']},{'id': '107', 'type': 'lambda_parameters', 'children': ['108']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '109', 'type': 'comparison_operator', 'children': ['110', '111'], 'value': 'in'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '111', 'type': 'tuple', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'NOT_ITER'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'maxiter'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'iterlens'},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'raise_statement', 'children': ['117']},{'id': '117', 'type': 'call', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'string', 'children': [], 'value': '"All iterable items must be of equal length"'},{'id': '121', 'type': 'if_statement', 'children': ['122', '125']},{'id': '122', 'type': 'comparison_operator', 'children': ['123', '124'], 'value': '=='},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'maxiter'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'NOT_ITER'},{'id': '125', 'type': 'block', 'children': ['126']},{'id': '126', 'type': 'return_statement', 'children': ['127']},{'id': '127', 'type': 'list', 'children': ['128'], 'value': '[args]'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '132', 'type': 'call', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '134', 'type': 'argument_list', 'children': ['135']},{'id': '135', 'type': 'call', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '137', 'type': 'argument_list', 'children': ['138']},{'id': '138', 'type': 'list_splat', 'children': ['139']},{'id': '139', 'type': 'list_comprehension', 'children': ['140', '153']},{'id': '140', 'type': '()', 'children': ['141']},{'id': '141', 'type': 'conditional_expression', 'children': ['142', '149', '152'], 'value': 'if'},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'repeat'},{'id': '146', 'type': 'argument_list', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'maxiter'},{'id': '149', 'type': 'comparison_operator', 'children': ['150', '151'], 'value': '=='},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'NOT_ITER'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '153', 'type': 'for_in_clause', 'children': ['154', '157']},{'id': '154', 'type': 'tuple_pattern', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '157', 'type': 'call', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '159', 'type': 'argument_list', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'mod_args'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'iterlens'},{'id': '162', 'type': 'if_statement', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '164', 'type': 'block', 'children': ['165']},{'id': '165', 'type': 'expression_statement', 'children': ['166']},{'id': '166', 'type': 'call', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '168', 'type': 'argument_list', 'children': ['169']},{'id': '169', 'type': 'call', 'children': ['170', '173']},{'id': '170', 'type': 'attribute', 'children': ['171', '172']},{'id': '171', 'type': 'string', 'children': [], 'value': '"tups = {0}"'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '175', 'type': 'return_statement', 'children': ['176']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'tups'} | def pack_tups(*args):
import numpy as np
_DEBUG = False
NOT_ITER = -1
UNINIT_VAL = -1
if _DEBUG:
print("args = {0}".format(args))
class StrNoIter(str):
def __iter__(self):
raise NotImplementedError("Non-iterable string")
mod_args = [(StrNoIter(a) if isinstance(a, str) else a) for a in args]
iterlens = [(len(a) if iterable(a) else NOT_ITER) for a in mod_args]
maxiter = max(iterlens)
if not all(map(lambda v: v in (NOT_ITER, maxiter), iterlens)):
raise ValueError("All iterable items must be of equal length")
if maxiter == NOT_ITER:
return [args]
tups = list(zip(*[(np.repeat(a, maxiter) if l == NOT_ITER else a)
for (a,l) in zip(mod_args, iterlens)]))
if _DEBUG:
print("tups = {0}".format(tups))
return tups |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_geom'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'c1'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'a1'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'c2'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'a2'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'tol'},{'id': '10', 'type': 'attribute', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': '_DEF'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'XYZ_COORD_MATCH_TOL'},{'id': '13', 'type': 'block', 'children': ['14', '21', '26', '35', '39', '56', '73', '90', '107', '128', '149', '178', '199', '226', '257', '288', '298', '325']},{'id': '14', 'type': 'import_from_statement', 'children': ['15', '19']},{'id': '15', 'type': 'relative_import', 'children': ['16', '17']},{'id': '16', 'type': 'import_prefix', 'children': []},{'id': '17', 'type': 'dotted_name', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '19', 'type': 'dotted_name', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'atom_num'},{'id': '21', 'type': 'import_statement', 'children': ['22']},{'id': '22', 'type': 'aliased_import', 'children': ['23', '25']},{'id': '23', 'type': 'dotted_name', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '26', 'type': 'import_from_statement', 'children': ['27', '31']},{'id': '27', 'type': 'relative_import', 'children': ['28', '29']},{'id': '28', 'type': 'import_prefix', 'children': []},{'id': '29', 'type': 'dotted_name', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '31', 'type': 'aliased_import', 'children': ['32', '34']},{'id': '32', 'type': 'dotted_name', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'EnumCheckGeomMismatch'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'ECGM'},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '38', 'type': 'True', 'children': []},{'id': '39', 'type': 'if_statement', 'children': ['40', '49']},{'id': '40', 'type': 'not_operator', 'children': ['41']},{'id': '41', 'type': 'comparison_operator', 'children': ['42', '48'], 'value': '=='},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'c1'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '48', 'type': 'integer', 'children': [], 'value': '1'},{'id': '49', 'type': 'block', 'children': ['50']},{'id': '50', 'type': 'raise_statement', 'children': ['51']},{'id': '51', 'type': 'call', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': '()', 'children': ['55']},{'id': '55', 'type': 'string', 'children': [], 'value': '"\'c1\' is not a vector."'},{'id': '56', 'type': 'if_statement', 'children': ['57', '66']},{'id': '57', 'type': 'not_operator', 'children': ['58']},{'id': '58', 'type': 'comparison_operator', 'children': ['59', '65'], 'value': '=='},{'id': '59', 'type': 'call', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'c2'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '65', 'type': 'integer', 'children': [], 'value': '1'},{'id': '66', 'type': 'block', 'children': ['67']},{'id': '67', 'type': 'raise_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': '()', 'children': ['72']},{'id': '72', 'type': 'string', 'children': [], 'value': '"\'c2\' is not a vector."'},{'id': '73', 'type': 'if_statement', 'children': ['74', '83']},{'id': '74', 'type': 'not_operator', 'children': ['75']},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '82'], 'value': '=='},{'id': '76', 'type': 'call', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '78', 'type': 'argument_list', 'children': ['79']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'a1'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '82', 'type': 'integer', 'children': [], 'value': '1'},{'id': '83', 'type': 'block', 'children': ['84']},{'id': '84', 'type': 'raise_statement', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': '()', 'children': ['89']},{'id': '89', 'type': 'string', 'children': [], 'value': '"\'a1\' is not a simple list."'},{'id': '90', 'type': 'if_statement', 'children': ['91', '100']},{'id': '91', 'type': 'not_operator', 'children': ['92']},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '99'], 'value': '=='},{'id': '93', 'type': 'call', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'a2'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '99', 'type': 'integer', 'children': [], 'value': '1'},{'id': '100', 'type': 'block', 'children': ['101']},{'id': '101', 'type': 'raise_statement', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': '()', 'children': ['106']},{'id': '106', 'type': 'string', 'children': [], 'value': '"\'a2\' is not a simple list."'},{'id': '107', 'type': 'if_statement', 'children': ['108', '122']},{'id': '108', 'type': 'not_operator', 'children': ['109']},{'id': '109', 'type': 'comparison_operator', 'children': ['110', '115'], 'value': '=='},{'id': '110', 'type': 'subscript', 'children': ['111', '114']},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'c1'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '114', 'type': 'integer', 'children': [], 'value': '0'},{'id': '115', 'type': 'binary_operator', 'children': ['116', '117'], 'value': '*'},{'id': '116', 'type': 'integer', 'children': [], 'value': '3'},{'id': '117', 'type': 'subscript', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'a1'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '121', 'type': 'integer', 'children': [], 'value': '0'},{'id': '122', 'type': 'block', 'children': ['123']},{'id': '123', 'type': 'raise_statement', 'children': ['124']},{'id': '124', 'type': 'call', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'string', 'children': [], 'value': '"len(c1) != 3*len(a1)"'},{'id': '128', 'type': 'if_statement', 'children': ['129', '143']},{'id': '129', 'type': 'not_operator', 'children': ['130']},{'id': '130', 'type': 'comparison_operator', 'children': ['131', '136'], 'value': '=='},{'id': '131', 'type': 'subscript', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'c2'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '135', 'type': 'integer', 'children': [], 'value': '0'},{'id': '136', 'type': 'binary_operator', 'children': ['137', '138'], 'value': '*'},{'id': '137', 'type': 'integer', 'children': [], 'value': '3'},{'id': '138', 'type': 'subscript', 'children': ['139', '142']},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'a2'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '142', 'type': 'integer', 'children': [], 'value': '0'},{'id': '143', 'type': 'block', 'children': ['144']},{'id': '144', 'type': 'raise_statement', 'children': ['145']},{'id': '145', 'type': 'call', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '147', 'type': 'argument_list', 'children': ['148']},{'id': '148', 'type': 'string', 'children': [], 'value': '"len(c2) != 3*len(a2)"'},{'id': '149', 'type': 'if_statement', 'children': ['150', '162']},{'id': '150', 'type': 'not_operator', 'children': ['151']},{'id': '151', 'type': 'comparison_operator', 'children': ['152', '157'], 'value': '=='},{'id': '152', 'type': 'subscript', 'children': ['153', '156']},{'id': '153', 'type': 'attribute', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'c1'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '156', 'type': 'integer', 'children': [], 'value': '0'},{'id': '157', 'type': 'subscript', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'c2'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '161', 'type': 'integer', 'children': [], 'value': '0'},{'id': '162', 'type': 'block', 'children': ['163', '167', '173']},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'assignment', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '166', 'type': 'False', 'children': []},{'id': '167', 'type': 'expression_statement', 'children': ['168']},{'id': '168', 'type': 'assignment', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'fail_type'},{'id': '170', 'type': 'attribute', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'ECGM'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'DIMENSION'},{'id': '173', 'type': 'return_statement', 'children': ['174']},{'id': '174', 'type': 'expression_list', 'children': ['175', '176', '177']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'fail_type'},{'id': '177', 'type': 'None', 'children': []},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'assignment', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'fail_loc'},{'id': '181', 'type': 'call', 'children': ['182', '185']},{'id': '182', 'type': 'attribute', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'less_equal'},{'id': '185', 'type': 'argument_list', 'children': ['186', '198']},{'id': '186', 'type': 'call', 'children': ['187', '190']},{'id': '187', 'type': 'attribute', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '190', 'type': 'argument_list', 'children': ['191']},{'id': '191', 'type': 'call', 'children': ['192', '195']},{'id': '192', 'type': 'attribute', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'subtract'},{'id': '195', 'type': 'argument_list', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'c1'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'c2'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'tol'},{'id': '199', 'type': 'if_statement', 'children': ['200', '210']},{'id': '200', 'type': 'comparison_operator', 'children': ['201', '205'], 'value': '!='},{'id': '201', 'type': 'call', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '203', 'type': 'argument_list', 'children': ['204']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'fail_loc'},{'id': '205', 'type': 'subscript', 'children': ['206', '209']},{'id': '206', 'type': 'attribute', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'c2'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '209', 'type': 'integer', 'children': [], 'value': '0'},{'id': '210', 'type': 'block', 'children': ['211', '215', '221']},{'id': '211', 'type': 'expression_statement', 'children': ['212']},{'id': '212', 'type': 'assignment', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '214', 'type': 'False', 'children': []},{'id': '215', 'type': 'expression_statement', 'children': ['216']},{'id': '216', 'type': 'assignment', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'fail_type'},{'id': '218', 'type': 'attribute', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'ECGM'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'COORDS'},{'id': '221', 'type': 'return_statement', 'children': ['222']},{'id': '222', 'type': 'expression_list', 'children': ['223', '224', '225']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'fail_type'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'fail_loc'},{'id': '226', 'type': 'if_statement', 'children': ['227', '241']},{'id': '227', 'type': 'call', 'children': ['228', '231']},{'id': '228', 'type': 'attribute', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'issubdtype'},{'id': '231', 'type': 'argument_list', 'children': ['232', '235']},{'id': '232', 'type': 'attribute', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'a1'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '235', 'type': 'call', 'children': ['236', '239']},{'id': '236', 'type': 'attribute', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '239', 'type': 'argument_list', 'children': ['240']},{'id': '240', 'type': 'string', 'children': [], 'value': "'str'"},{'id': '241', 'type': 'block', 'children': ['242']},{'id': '242', 'type': 'expression_statement', 'children': ['243']},{'id': '243', 'type': 'assignment', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'a1'},{'id': '245', 'type': 'call', 'children': ['246', '249']},{'id': '246', 'type': 'attribute', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '249', 'type': 'argument_list', 'children': ['250']},{'id': '250', 'type': 'list_comprehension', 'children': ['251', '254']},{'id': '251', 'type': 'subscript', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'atom_num'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '254', 'type': 'for_in_clause', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'a1'},{'id': '257', 'type': 'if_statement', 'children': ['258', '272']},{'id': '258', 'type': 'call', 'children': ['259', '262']},{'id': '259', 'type': 'attribute', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'issubdtype'},{'id': '262', 'type': 'argument_list', 'children': ['263', '266']},{'id': '263', 'type': 'attribute', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'a2'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '266', 'type': 'call', 'children': ['267', '270']},{'id': '267', 'type': 'attribute', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '270', 'type': 'argument_list', 'children': ['271']},{'id': '271', 'type': 'string', 'children': [], 'value': "'str'"},{'id': '272', 'type': 'block', 'children': ['273']},{'id': '273', 'type': 'expression_statement', 'children': ['274']},{'id': '274', 'type': 'assignment', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'a2'},{'id': '276', 'type': 'call', 'children': ['277', '280']},{'id': '277', 'type': 'attribute', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '280', 'type': 'argument_list', 'children': ['281']},{'id': '281', 'type': 'list_comprehension', 'children': ['282', '285']},{'id': '282', 'type': 'subscript', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'atom_num'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '285', 'type': 'for_in_clause', 'children': ['286', '287']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'a2'},{'id': '288', 'type': 'expression_statement', 'children': ['289']},{'id': '289', 'type': 'assignment', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'fail_loc'},{'id': '291', 'type': 'call', 'children': ['292', '295']},{'id': '292', 'type': 'attribute', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'equal'},{'id': '295', 'type': 'argument_list', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'a1'},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'a2'},{'id': '298', 'type': 'if_statement', 'children': ['299', '309']},{'id': '299', 'type': 'comparison_operator', 'children': ['300', '304'], 'value': '!='},{'id': '300', 'type': 'call', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '302', 'type': 'argument_list', 'children': ['303']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'fail_loc'},{'id': '304', 'type': 'subscript', 'children': ['305', '308']},{'id': '305', 'type': 'attribute', 'children': ['306', '307']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'a2'},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '308', 'type': 'integer', 'children': [], 'value': '0'},{'id': '309', 'type': 'block', 'children': ['310', '314', '320']},{'id': '310', 'type': 'expression_statement', 'children': ['311']},{'id': '311', 'type': 'assignment', 'children': ['312', '313']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '313', 'type': 'False', 'children': []},{'id': '314', 'type': 'expression_statement', 'children': ['315']},{'id': '315', 'type': 'assignment', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'fail_type'},{'id': '317', 'type': 'attribute', 'children': ['318', '319']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'ECGM'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'ATOMS'},{'id': '320', 'type': 'return_statement', 'children': ['321']},{'id': '321', 'type': 'expression_list', 'children': ['322', '323', '324']},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'fail_type'},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'fail_loc'},{'id': '325', 'type': 'return_statement', 'children': ['326']},{'id': '326', 'type': 'expression_list', 'children': ['327', '328', '329']},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '328', 'type': 'None', 'children': []},{'id': '329', 'type': 'None', 'children': []} | def check_geom(c1, a1, c2, a2, tol=_DEF.XYZ_COORD_MATCH_TOL):
from ..const import atom_num
import numpy as np
from ..const import EnumCheckGeomMismatch as ECGM
match = True
if not len(c1.shape) == 1:
raise ValueError(("'c1' is not a vector."))
if not len(c2.shape) == 1:
raise ValueError(("'c2' is not a vector."))
if not len(a1.shape) == 1:
raise ValueError(("'a1' is not a simple list."))
if not len(a2.shape) == 1:
raise ValueError(("'a2' is not a simple list."))
if not c1.shape[0] == 3 * a1.shape[0]:
raise ValueError("len(c1) != 3*len(a1)")
if not c2.shape[0] == 3 * a2.shape[0]:
raise ValueError("len(c2) != 3*len(a2)")
if not c1.shape[0] == c2.shape[0]:
match = False
fail_type = ECGM.DIMENSION
return match, fail_type, None
fail_loc = np.less_equal(np.abs(np.subtract(c1,c2)), tol)
if sum(fail_loc) != c2.shape[0]:
match = False
fail_type = ECGM.COORDS
return match, fail_type, fail_loc
if np.issubdtype(a1.dtype, np.dtype('str')):
a1 = np.array([atom_num[e] for e in a1])
if np.issubdtype(a2.dtype, np.dtype('str')):
a2 = np.array([atom_num[e] for e in a2])
fail_loc = np.equal(a1, a2)
if sum(fail_loc) != a2.shape[0]:
match = False
fail_type = ECGM.ATOMS
return match, fail_type, fail_loc
return match, None, None |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'assert_npfloatarray'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'varname'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'desc'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'exc'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'tc'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'errsrc'},{'id': '10', 'type': 'block', 'children': ['11', '16', '53', '96']},{'id': '11', 'type': 'import_statement', 'children': ['12']},{'id': '12', 'type': 'aliased_import', 'children': ['13', '15']},{'id': '13', 'type': 'dotted_name', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '16', 'type': 'if_statement', 'children': ['17', '20', '25']},{'id': '17', 'type': 'comparison_operator', 'children': ['18', '19'], 'value': 'is'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'varname'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'block', 'children': ['21']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '25', 'type': 'else_clause', 'children': ['26']},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'try_statement', 'children': ['28', '37']},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '34', 'type': 'argument_list', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'varname'},{'id': '37', 'type': 'except_clause', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'AttributeError'},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'raise_statement', 'children': ['41']},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'exc'},{'id': '43', 'type': 'argument_list', 'children': ['44', '45', '52']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'tc'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'string', 'children': [], 'value': '"Attribute \'{0}\' not defined in \'{1}\'"'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '49', 'type': 'argument_list', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'varname'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'errsrc'},{'id': '53', 'type': 'try_statement', 'children': ['54', '61', '76']},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '61', 'type': 'except_clause', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'AttributeError'},{'id': '63', 'type': 'block', 'children': ['64']},{'id': '64', 'type': 'raise_statement', 'children': ['65']},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'exc'},{'id': '67', 'type': 'argument_list', 'children': ['68', '69', '75']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'tc'},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'string', 'children': [], 'value': '"\'{0}\' is not an np.array (lacks a \'dtype\' member)"'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'desc'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'errsrc'},{'id': '76', 'type': 'else_clause', 'children': ['77']},{'id': '77', 'type': 'block', 'children': ['78']},{'id': '78', 'type': 'if_statement', 'children': ['79', '83']},{'id': '79', 'type': 'not_operator', 'children': ['80']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '83', 'type': 'block', 'children': ['84']},{'id': '84', 'type': 'raise_statement', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'exc'},{'id': '87', 'type': 'argument_list', 'children': ['88', '89', '95']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'tc'},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'string', 'children': [], 'value': '"\'{0}\' is not an np.array (\'len(shape)\' < 1)"'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'desc'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'errsrc'},{'id': '96', 'type': 'if_statement', 'children': ['97', '107']},{'id': '97', 'type': 'not_operator', 'children': ['98']},{'id': '98', 'type': 'call', 'children': ['99', '102']},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'issubdtype'},{'id': '102', 'type': 'argument_list', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '107', 'type': 'block', 'children': ['108']},{'id': '108', 'type': 'raise_statement', 'children': ['109']},{'id': '109', 'type': 'call', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'exc'},{'id': '111', 'type': 'argument_list', 'children': ['112', '113', '119']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'tc'},{'id': '113', 'type': 'call', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'string', 'children': [], 'value': '"\'{0}\' is not an np.array of np.float"'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '117', 'type': 'argument_list', 'children': ['118']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'desc'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'errsrc'} | def assert_npfloatarray(obj, varname, desc, exc, tc, errsrc):
import numpy as np
if varname is None:
var = obj
else:
try:
var = getattr(obj, varname)
except AttributeError:
raise exc(tc, "Attribute '{0}' not defined in '{1}'"
.format(varname, obj), errsrc)
try:
dt = var.dtype
except AttributeError:
raise exc(tc, "'{0}' is not an np.array (lacks a 'dtype' member)"
.format(desc), errsrc)
else:
if not var.shape:
raise exc(tc, "'{0}' is not an np.array ('len(shape)' < 1)"
.format(desc), errsrc)
if not np.issubdtype(dt, np.float):
raise exc(tc, "'{0}' is not an np.array of np.float".format(desc),
errsrc) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_advance_pattern_generators'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '6', 'type': 'block', 'children': ['7', '11', '80']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'valid_generators'},{'id': '10', 'type': 'list', 'children': [], 'value': '[]'},{'id': '11', 'type': 'for_statement', 'children': ['12', '13', '16']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'for_statement', 'children': ['18', '19', '25', '67']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'trial'},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'max_trials'},{'id': '25', 'type': 'block', 'children': ['26', '53', '60']},{'id': '26', 'type': 'if_statement', 'children': ['27', '44']},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'alltrue'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'list_comprehension', 'children': ['33', '41']},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '36', 'type': 'identifier', 'children': [], 'value': '__distance_valid'},{'id': '37', 'type': 'argument_list', 'children': ['38', '39', '40']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '41', 'type': 'for_in_clause', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'valid_generators'},{'id': '44', 'type': 'block', 'children': ['45', '52']},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'valid_generators'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '52', 'type': 'break_statement', 'children': []},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'force_new_dynamic_value'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'string', 'children': [], 'value': "'x'"},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'force_new_dynamic_value'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'string', 'children': [], 'value': "'y'"},{'id': '67', 'type': 'else_clause', 'children': ['68']},{'id': '68', 'type': 'block', 'children': ['69']},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'call', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '74', 'type': 'argument_list', 'children': ['75']},{'id': '75', 'type': 'binary_operator', 'children': ['76', '77'], 'value': '%'},{'id': '76', 'type': 'string', 'children': [], 'value': '"Unable to place pattern %s subject to given constraints"'},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '80', 'type': 'return_statement', 'children': ['81']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'valid_generators'} | def _advance_pattern_generators(self,p):
valid_generators = []
for g in p.generators:
for trial in range(self.max_trials):
if np.alltrue([self.__distance_valid(g,v,p) for v in valid_generators]):
valid_generators.append(g)
break
g.force_new_dynamic_value('x')
g.force_new_dynamic_value('y')
else:
self.warning("Unable to place pattern %s subject to given constraints" %
g.name)
return valid_generators |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'register'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '10']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'settings_class'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'NoSwitcher'},{'id': '8', 'type': 'list_splat_pattern', 'children': ['9']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'simple_checks'},{'id': '10', 'type': 'dictionary_splat_pattern', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '12', 'type': 'block', 'children': ['13', '38', '48', '68']},{'id': '13', 'type': 'if_statement', 'children': ['14', '17']},{'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': 'is'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'settings_class'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'NoSwitcher'},{'id': '17', 'type': 'block', 'children': ['18', '36']},{'id': '18', 'type': 'function_definition', 'children': ['19', '20', '22']},{'id': '19', 'type': 'function_name', 'children': [], 'value': 'decorator'},{'id': '20', 'type': 'parameters', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '22', 'type': 'block', 'children': ['23', '34']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '28', 'type': 'argument_list', 'children': ['29', '30', '32']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '30', 'type': 'list_splat', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'simple_checks'},{'id': '32', 'type': 'dictionary_splat', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '34', 'type': 'return_statement', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '36', 'type': 'return_statement', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'decorator'},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'available_checks'},{'id': '41', 'type': 'call', 'children': ['42', '47']},{'id': '42', 'type': 'attribute', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'checks'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '47', 'type': 'argument_list', 'children': []},{'id': '48', 'type': 'for_statement', 'children': ['49', '50', '55']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'condition'},{'id': '50', 'type': 'call', 'children': ['51', '54']},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '54', 'type': 'argument_list', 'children': []},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'if_statement', 'children': ['57', '60']},{'id': '57', 'type': 'comparison_operator', 'children': ['58', '59'], 'value': 'not'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'condition'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'available_checks'},{'id': '60', 'type': 'block', 'children': ['61']},{'id': '61', 'type': 'raise_statement', 'children': ['62']},{'id': '62', 'type': 'call', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'InvalidCondition'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'binary_operator', 'children': ['66', '67'], 'value': '%'},{'id': '66', 'type': 'string', 'children': [], 'value': '\'There is no check for the condition "%s"\''},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'condition'},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'call', 'children': ['70', '75']},{'id': '70', 'type': 'attribute', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '73', 'type': 'identifier', 'children': [], 'value': '_registry'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'tuple', 'children': ['77', '78', '79']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'settings_class'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'simple_checks'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'conditions'} | def register(self, settings_class=NoSwitcher, *simple_checks,
**conditions):
if settings_class is NoSwitcher:
def decorator(cls):
self.register(cls, *simple_checks, **conditions)
return cls
return decorator
available_checks = self.checks.keys()
for condition in conditions.keys():
if condition not in available_checks:
raise InvalidCondition(
'There is no check for the condition "%s"' % condition)
self._registry.append((settings_class, simple_checks, conditions)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_load_data'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'bohrs'},{'id': '9', 'type': 'True', 'children': []},{'id': '10', 'type': 'block', 'children': ['11', '16', '25', '32', '49', '65', '81', '102', '167', '185', '195', '201', '209', '223', '231', '249']},{'id': '11', 'type': 'import_statement', 'children': ['12']},{'id': '12', 'type': 'aliased_import', 'children': ['13', '15']},{'id': '13', 'type': 'dotted_name', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '16', 'type': 'import_from_statement', 'children': ['17', '21', '23']},{'id': '17', 'type': 'relative_import', 'children': ['18', '19']},{'id': '18', 'type': 'import_prefix', 'children': []},{'id': '19', 'type': 'dotted_name', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '21', 'type': 'dotted_name', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'atom_num'},{'id': '23', 'type': 'dotted_name', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '25', 'type': 'import_from_statement', 'children': ['26', '30']},{'id': '26', 'type': 'relative_import', 'children': ['27', '28']},{'id': '27', 'type': 'import_prefix', 'children': []},{'id': '28', 'type': 'dotted_name', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '30', 'type': 'dotted_name', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'XYZError'},{'id': '32', 'type': 'if_statement', 'children': ['33', '39']},{'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': 'in'},{'id': '34', 'type': 'string', 'children': [], 'value': "'geoms'"},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'dir'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'raise_statement', 'children': ['41']},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'XYZError'},{'id': '43', 'type': 'argument_list', 'children': ['44', '47', '48']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'XYZError'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'OVERWRITE'},{'id': '47', 'type': 'string', 'children': [], 'value': '"Cannot overwrite contents of existing OpanXYZ"'},{'id': '48', 'type': 'string', 'children': [], 'value': '""'},{'id': '49', 'type': 'if_statement', 'children': ['50', '59']},{'id': '50', 'type': 'not_operator', 'children': ['51']},{'id': '51', 'type': 'comparison_operator', 'children': ['52', '58'], 'value': '=='},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '58', 'type': 'integer', 'children': [], 'value': '1'},{'id': '59', 'type': 'block', 'children': ['60']},{'id': '60', 'type': 'raise_statement', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'string', 'children': [], 'value': '"Coordinates are not a vector"'},{'id': '65', 'type': 'if_statement', 'children': ['66', '75']},{'id': '66', 'type': 'not_operator', 'children': ['67']},{'id': '67', 'type': 'comparison_operator', 'children': ['68', '74'], 'value': '=='},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '74', 'type': 'integer', 'children': [], 'value': '1'},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'raise_statement', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'string', 'children': [], 'value': '"Atom symbols are not a simple list"'},{'id': '81', 'type': 'if_statement', 'children': ['82', '96']},{'id': '82', 'type': 'not_operator', 'children': ['83']},{'id': '83', 'type': 'comparison_operator', 'children': ['84', '89'], 'value': '=='},{'id': '84', 'type': 'subscript', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '88', 'type': 'integer', 'children': [], 'value': '0'},{'id': '89', 'type': 'binary_operator', 'children': ['90', '91'], 'value': '*'},{'id': '90', 'type': 'integer', 'children': [], 'value': '3'},{'id': '91', 'type': 'subscript', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '95', 'type': 'integer', 'children': [], 'value': '0'},{'id': '96', 'type': 'block', 'children': ['97']},{'id': '97', 'type': 'raise_statement', 'children': ['98']},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'string', 'children': [], 'value': '"len(coords) != 3 * len(atom_syms)"'},{'id': '102', 'type': 'if_statement', 'children': ['103', '127']},{'id': '103', 'type': 'not_operator', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '106', 'type': 'generator_expression', 'children': ['107', '117']},{'id': '107', 'type': '()', 'children': ['108']},{'id': '108', 'type': 'comparison_operator', 'children': ['109', '116'], 'value': 'in'},{'id': '109', 'type': 'call', 'children': ['110', '115']},{'id': '110', 'type': 'attribute', 'children': ['111', '114']},{'id': '111', 'type': 'subscript', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'upper'},{'id': '115', 'type': 'argument_list', 'children': []},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'atom_num'},{'id': '117', 'type': 'for_in_clause', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '119', 'type': 'call', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '121', 'type': 'argument_list', 'children': ['122']},{'id': '122', 'type': 'subscript', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '126', 'type': 'integer', 'children': [], 'value': '0'},{'id': '127', 'type': 'block', 'children': ['128']},{'id': '128', 'type': 'raise_statement', 'children': ['129']},{'id': '129', 'type': 'call', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '131', 'type': 'argument_list', 'children': ['132']},{'id': '132', 'type': 'call', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'string', 'children': [], 'value': '"Invalid atoms specified: {0}"'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '136', 'type': 'argument_list', 'children': ['137']},{'id': '137', 'type': 'list_comprehension', 'children': ['138', '143']},{'id': '138', 'type': 'tuple', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '140', 'type': 'subscript', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '143', 'type': 'for_in_clause', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '145', 'type': 'generator_expression', 'children': ['146', '147', '164']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '147', 'type': 'for_in_clause', 'children': ['148', '151']},{'id': '148', 'type': 'tuple_pattern', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'valid'},{'id': '151', 'type': 'call', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '156', 'type': 'argument_list', 'children': ['157', '163']},{'id': '157', 'type': 'lambda', 'children': ['158', '160']},{'id': '158', 'type': 'lambda_parameters', 'children': ['159']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '160', 'type': 'comparison_operator', 'children': ['161', '162'], 'value': 'in'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'atom_num'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '164', 'type': 'if_clause', 'children': ['165']},{'id': '165', 'type': 'not_operator', 'children': ['166']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'valid'},{'id': '167', 'type': 'if_statement', 'children': ['168', '179']},{'id': '168', 'type': 'not_operator', 'children': ['169']},{'id': '169', 'type': 'call', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '171', 'type': 'argument_list', 'children': ['172']},{'id': '172', 'type': 'call', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '174', 'type': 'argument_list', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'isreal'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '179', 'type': 'block', 'children': ['180']},{'id': '180', 'type': 'raise_statement', 'children': ['181']},{'id': '181', 'type': 'call', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '183', 'type': 'argument_list', 'children': ['184']},{'id': '184', 'type': 'string', 'children': [], 'value': '"All coordinates must be real numeric"'},{'id': '185', 'type': 'expression_statement', 'children': ['186']},{'id': '186', 'type': 'assignment', 'children': ['187', '190']},{'id': '187', 'type': 'attribute', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '190', 'type': 'subscript', 'children': ['191', '194']},{'id': '191', 'type': 'attribute', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '194', 'type': 'integer', 'children': [], 'value': '0'},{'id': '195', 'type': 'expression_statement', 'children': ['196']},{'id': '196', 'type': 'assignment', 'children': ['197', '200']},{'id': '197', 'type': 'attribute', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'num_geoms'},{'id': '200', 'type': 'integer', 'children': [], 'value': '1'},{'id': '201', 'type': 'expression_statement', 'children': ['202']},{'id': '202', 'type': 'assignment', 'children': ['203', '206']},{'id': '203', 'type': 'attribute', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'in_str'},{'id': '206', 'type': 'attribute', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'LOAD_DATA_FLAG'},{'id': '209', 'type': 'expression_statement', 'children': ['210']},{'id': '210', 'type': 'assignment', 'children': ['211', '214']},{'id': '211', 'type': 'attribute', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'descs'},{'id': '214', 'type': 'call', 'children': ['215', '218']},{'id': '215', 'type': 'attribute', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '218', 'type': 'argument_list', 'children': ['219']},{'id': '219', 'type': 'list', 'children': ['220'], 'value': '[self.LOAD_DATA_FLAG]'},{'id': '220', 'type': 'attribute', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'LOAD_DATA_FLAG'},{'id': '223', 'type': 'expression_statement', 'children': ['224']},{'id': '224', 'type': 'assignment', 'children': ['225', '228']},{'id': '225', 'type': 'attribute', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'XYZ_path'},{'id': '228', 'type': 'attribute', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'LOAD_DATA_FLAG'},{'id': '231', 'type': 'expression_statement', 'children': ['232']},{'id': '232', 'type': 'assignment', 'children': ['233', '236']},{'id': '233', 'type': 'attribute', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '236', 'type': 'call', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '238', 'type': 'argument_list', 'children': ['239']},{'id': '239', 'type': 'call', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '241', 'type': 'argument_list', 'children': ['242', '245']},{'id': '242', 'type': 'attribute', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'upper'},{'id': '245', 'type': 'call', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '247', 'type': 'argument_list', 'children': ['248']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'atom_syms'},{'id': '249', 'type': 'expression_statement', 'children': ['250']},{'id': '250', 'type': 'assignment', 'children': ['251', '254']},{'id': '251', 'type': 'attribute', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'geoms'},{'id': '254', 'type': 'list', 'children': ['255'], 'value': '[coords / (1.0 if bohrs else PHYS.ANG_PER_BOHR)]'},{'id': '255', 'type': 'binary_operator', 'children': ['256', '257'], 'value': '/'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '257', 'type': '()', 'children': ['258']},{'id': '258', 'type': 'conditional_expression', 'children': ['259', '260', '261'], 'value': 'if'},{'id': '259', 'type': 'float', 'children': [], 'value': '1.0'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'bohrs'},{'id': '261', 'type': 'attribute', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'PHYS'},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'ANG_PER_BOHR'} | def _load_data(self, atom_syms, coords, bohrs=True):
import numpy as np
from .const import atom_num, PHYS
from .error import XYZError
if 'geoms' in dir(self):
raise XYZError(XYZError.OVERWRITE,
"Cannot overwrite contents of existing OpanXYZ", "")
if not len(coords.shape) == 1:
raise ValueError("Coordinates are not a vector")
if not len(atom_syms.shape) == 1:
raise ValueError("Atom symbols are not a simple list")
if not coords.shape[0] == 3 * atom_syms.shape[0]:
raise ValueError("len(coords) != 3 * len(atom_syms)")
if not all( (atom_syms[i].upper() in atom_num)
for i in range(atom_syms.shape[0]) ):
raise ValueError("Invalid atoms specified: {0}".format(
[(j, atom_syms[j]) for j in
(i for (i, valid) in
enumerate(map(lambda k: k in atom_num, atom_syms))
if not valid
)
] ))
if not all(map(np.isreal, coords)):
raise ValueError("All coordinates must be real numeric")
self.num_atoms = atom_syms.shape[0]
self.num_geoms = 1
self.in_str = self.LOAD_DATA_FLAG
self.descs = np.array([self.LOAD_DATA_FLAG])
self.XYZ_path = self.LOAD_DATA_FLAG
self.atom_syms = list(map(str.upper, list(atom_syms)))
self.geoms = [coords / (1.0 if bohrs else PHYS.ANG_PER_BOHR)] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'dist_single'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'g_num'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '8', 'type': 'block', 'children': ['9', '14', '21', '30', '53', '76', '91', '106', '139']},{'id': '9', 'type': 'import_statement', 'children': ['10']},{'id': '10', 'type': 'aliased_import', 'children': ['11', '13']},{'id': '11', 'type': 'dotted_name', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '14', 'type': 'import_from_statement', 'children': ['15', '17']},{'id': '15', 'type': 'dotted_name', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '17', 'type': 'aliased_import', 'children': ['18', '20']},{'id': '18', 'type': 'dotted_name', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'linalg'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '21', 'type': 'import_from_statement', 'children': ['22', '26']},{'id': '22', 'type': 'relative_import', 'children': ['23', '24']},{'id': '23', 'type': 'import_prefix', 'children': []},{'id': '24', 'type': 'dotted_name', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '26', 'type': 'aliased_import', 'children': ['27', '29']},{'id': '27', 'type': 'dotted_name', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'safe_cast'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '30', 'type': 'if_statement', 'children': ['31', '42']},{'id': '31', 'type': 'not_operator', 'children': ['32']},{'id': '32', 'type': '()', 'children': ['33']},{'id': '33', 'type': 'comparison_operator', 'children': ['34', '38', '39'], 'value': '<='},{'id': '34', 'type': 'unary_operator', 'children': ['35'], 'value': '-'},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '42', 'type': 'block', 'children': ['43']},{'id': '43', 'type': 'raise_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'string', 'children': [], 'value': '"Invalid index for \'at_1\' ({0})"'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '53', 'type': 'if_statement', 'children': ['54', '65']},{'id': '54', 'type': 'not_operator', 'children': ['55']},{'id': '55', 'type': '()', 'children': ['56']},{'id': '56', 'type': 'comparison_operator', 'children': ['57', '61', '62'], 'value': '<='},{'id': '57', 'type': 'unary_operator', 'children': ['58'], 'value': '-'},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'raise_statement', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'call', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'string', 'children': [], 'value': '"Invalid index for \'at_2\' ({0})"'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '74', 'type': 'argument_list', 'children': ['75']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '81', 'type': 'argument_list', 'children': ['82', '88']},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'floor'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'int_'},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '94', 'type': 'call', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '96', 'type': 'argument_list', 'children': ['97', '103']},{'id': '97', 'type': 'call', 'children': ['98', '101']},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'floor'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'int_'},{'id': '106', 'type': 'if_statement', 'children': ['107', '110', '115']},{'id': '107', 'type': 'comparison_operator', 'children': ['108', '109'], 'value': '=='},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '110', 'type': 'block', 'children': ['111']},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'assignment', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'dist'},{'id': '114', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '115', 'type': 'else_clause', 'children': ['116']},{'id': '116', 'type': 'block', 'children': ['117']},{'id': '117', 'type': 'expression_statement', 'children': ['118']},{'id': '118', 'type': 'assignment', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'dist'},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '122', 'type': 'argument_list', 'children': ['123', '136']},{'id': '123', 'type': 'call', 'children': ['124', '127']},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '127', 'type': 'argument_list', 'children': ['128']},{'id': '128', 'type': 'call', 'children': ['129', '132']},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'displ_single'},{'id': '132', 'type': 'argument_list', 'children': ['133', '134', '135']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'g_num'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'float_'},{'id': '139', 'type': 'return_statement', 'children': ['140']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'dist'} | def dist_single(self, g_num, at_1, at_2):
import numpy as np
from scipy import linalg as spla
from .utils import safe_cast as scast
if not (-self.num_atoms <= at_1 < self.num_atoms):
raise IndexError("Invalid index for 'at_1' ({0})".format(at_1))
if not (-self.num_atoms <= at_2 < self.num_atoms):
raise IndexError("Invalid index for 'at_2' ({0})".format(at_2))
at_1 = scast(np.floor(at_1), np.int_)
at_2 = scast(np.floor(at_2), np.int_)
if at_1 == at_2:
dist = 0.0
else:
dist = scast(
spla.norm(self.displ_single(g_num, at_1, at_2)),
np.float_)
return dist |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'dist_iter'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'invalid_error'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'block', 'children': ['12', '17', '24', '57', '68', '76', '84']},{'id': '12', 'type': 'import_statement', 'children': ['13']},{'id': '13', 'type': 'aliased_import', 'children': ['14', '16']},{'id': '14', 'type': 'dotted_name', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '17', 'type': 'import_from_statement', 'children': ['18', '22']},{'id': '18', 'type': 'relative_import', 'children': ['19', '20']},{'id': '19', 'type': 'import_prefix', 'children': []},{'id': '20', 'type': 'dotted_name', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '22', 'type': 'dotted_name', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'pack_tups'},{'id': '24', 'type': 'if_statement', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '26', 'type': 'block', 'children': ['27', '37', '47']},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'string', 'children': [], 'value': '"g_nums = {0}"'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'call', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'string', 'children': [], 'value': '"ats_1 = {0}"'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '47', 'type': 'expression_statement', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'string', 'children': [], 'value': '"ats_2 = {0}"'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '60', 'type': 'call', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'identifier', 'children': [], 'value': '_none_subst'},{'id': '64', 'type': 'argument_list', 'children': ['65', '66', '67']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'pack_tups'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'list_splat', 'children': ['75']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '76', 'type': 'if_statement', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '78', 'type': 'block', 'children': ['79']},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '84', 'type': 'for_statement', 'children': ['85', '86', '87']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'tup'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '87', 'type': 'block', 'children': ['88']},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'yield', 'children': ['90']},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '93', 'type': 'identifier', 'children': [], 'value': '_iter_return'},{'id': '94', 'type': 'argument_list', 'children': ['95', '96', '99']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'tup'},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'dist_single'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'invalid_error'} | def dist_iter(self, g_nums, ats_1, ats_2, invalid_error=False):
import numpy as np
from .utils import pack_tups
if _DEBUG:
print("g_nums = {0}".format(g_nums))
print("ats_1 = {0}".format(ats_1))
print("ats_2 = {0}".format(ats_2))
arglist = self._none_subst(g_nums, ats_1, ats_2)
tups = pack_tups(*arglist)
if _DEBUG:
print(tups)
for tup in tups:
yield self._iter_return(tup, self.dist_single, invalid_error) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'angle_single'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'g_num'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'at_3'},{'id': '9', 'type': 'block', 'children': ['10', '15', '24', '32', '55', '78', '101', '116', '131', '146', '166', '186', '203', '214', '225', '233']},{'id': '10', 'type': 'import_statement', 'children': ['11']},{'id': '11', 'type': 'aliased_import', 'children': ['12', '14']},{'id': '12', 'type': 'dotted_name', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '15', 'type': 'import_from_statement', 'children': ['16', '20']},{'id': '16', 'type': 'relative_import', 'children': ['17', '18']},{'id': '17', 'type': 'import_prefix', 'children': []},{'id': '18', 'type': 'dotted_name', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '20', 'type': 'aliased_import', 'children': ['21', '23']},{'id': '21', 'type': 'dotted_name', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'safe_cast'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '24', 'type': 'import_from_statement', 'children': ['25', '30']},{'id': '25', 'type': 'relative_import', 'children': ['26', '27']},{'id': '26', 'type': 'import_prefix', 'children': []},{'id': '27', 'type': 'dotted_name', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'vector'},{'id': '30', 'type': 'dotted_name', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'vec_angle'},{'id': '32', 'type': 'if_statement', 'children': ['33', '44']},{'id': '33', 'type': 'not_operator', 'children': ['34']},{'id': '34', 'type': '()', 'children': ['35']},{'id': '35', 'type': 'comparison_operator', 'children': ['36', '40', '41'], 'value': '<='},{'id': '36', 'type': 'unary_operator', 'children': ['37'], 'value': '-'},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '44', 'type': 'block', 'children': ['45']},{'id': '45', 'type': 'raise_statement', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'string', 'children': [], 'value': '"Invalid index for \'at_1\' ({0})"'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '55', 'type': 'if_statement', 'children': ['56', '67']},{'id': '56', 'type': 'not_operator', 'children': ['57']},{'id': '57', 'type': '()', 'children': ['58']},{'id': '58', 'type': 'comparison_operator', 'children': ['59', '63', '64'], 'value': '<='},{'id': '59', 'type': 'unary_operator', 'children': ['60'], 'value': '-'},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'raise_statement', 'children': ['69']},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'call', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'string', 'children': [], 'value': '"Invalid index for \'at_2\' ({0})"'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '76', 'type': 'argument_list', 'children': ['77']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '78', 'type': 'if_statement', 'children': ['79', '90']},{'id': '79', 'type': 'not_operator', 'children': ['80']},{'id': '80', 'type': '()', 'children': ['81']},{'id': '81', 'type': 'comparison_operator', 'children': ['82', '86', '87'], 'value': '<='},{'id': '82', 'type': 'unary_operator', 'children': ['83'], 'value': '-'},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'at_3'},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '90', 'type': 'block', 'children': ['91']},{'id': '91', 'type': 'raise_statement', 'children': ['92']},{'id': '92', 'type': 'call', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'call', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'string', 'children': [], 'value': '"Invalid index for \'at_3\' ({0})"'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '99', 'type': 'argument_list', 'children': ['100']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'at_3'},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'assignment', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '106', 'type': 'argument_list', 'children': ['107', '113']},{'id': '107', 'type': 'call', 'children': ['108', '111']},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'floor'},{'id': '111', 'type': 'argument_list', 'children': ['112']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'int_'},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '119', 'type': 'call', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '121', 'type': 'argument_list', 'children': ['122', '128']},{'id': '122', 'type': 'call', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'floor'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'int_'},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'assignment', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'at_3'},{'id': '134', 'type': 'call', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '136', 'type': 'argument_list', 'children': ['137', '143']},{'id': '137', 'type': 'call', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'floor'},{'id': '141', 'type': 'argument_list', 'children': ['142']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'at_3'},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'int_'},{'id': '146', 'type': 'if_statement', 'children': ['147', '160']},{'id': '147', 'type': 'comparison_operator', 'children': ['148', '154'], 'value': '=='},{'id': '148', 'type': '()', 'children': ['149']},{'id': '149', 'type': 'binary_operator', 'children': ['150', '151'], 'value': '%'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '154', 'type': '()', 'children': ['155']},{'id': '155', 'type': 'binary_operator', 'children': ['156', '157'], 'value': '%'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '160', 'type': 'block', 'children': ['161']},{'id': '161', 'type': 'raise_statement', 'children': ['162']},{'id': '162', 'type': 'call', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '164', 'type': 'argument_list', 'children': ['165']},{'id': '165', 'type': 'string', 'children': [], 'value': '"\'at_1\' and \'at_2\' must be different"'},{'id': '166', 'type': 'if_statement', 'children': ['167', '180']},{'id': '167', 'type': 'comparison_operator', 'children': ['168', '174'], 'value': '=='},{'id': '168', 'type': '()', 'children': ['169']},{'id': '169', 'type': 'binary_operator', 'children': ['170', '171'], 'value': '%'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '174', 'type': '()', 'children': ['175']},{'id': '175', 'type': 'binary_operator', 'children': ['176', '177'], 'value': '%'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'at_3'},{'id': '177', 'type': 'attribute', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '180', 'type': 'block', 'children': ['181']},{'id': '181', 'type': 'raise_statement', 'children': ['182']},{'id': '182', 'type': 'call', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'string', 'children': [], 'value': '"\'at_2\' and \'at_3\' must be different"'},{'id': '186', 'type': 'if_statement', 'children': ['187', '200']},{'id': '187', 'type': 'comparison_operator', 'children': ['188', '194'], 'value': '=='},{'id': '188', 'type': '()', 'children': ['189']},{'id': '189', 'type': 'binary_operator', 'children': ['190', '191'], 'value': '%'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '191', 'type': 'attribute', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '194', 'type': '()', 'children': ['195']},{'id': '195', 'type': 'binary_operator', 'children': ['196', '197'], 'value': '%'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'at_3'},{'id': '197', 'type': 'attribute', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '200', 'type': 'block', 'children': ['201']},{'id': '201', 'type': 'return_statement', 'children': ['202']},{'id': '202', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '203', 'type': 'expression_statement', 'children': ['204']},{'id': '204', 'type': 'assignment', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'vec_2_1'},{'id': '206', 'type': 'call', 'children': ['207', '210']},{'id': '207', 'type': 'attribute', 'children': ['208', '209']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'displ_single'},{'id': '210', 'type': 'argument_list', 'children': ['211', '212', '213']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'g_num'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '214', 'type': 'expression_statement', 'children': ['215']},{'id': '215', 'type': 'assignment', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'vec_2_3'},{'id': '217', 'type': 'call', 'children': ['218', '221']},{'id': '218', 'type': 'attribute', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'displ_single'},{'id': '221', 'type': 'argument_list', 'children': ['222', '223', '224']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'g_num'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'at_3'},{'id': '225', 'type': 'expression_statement', 'children': ['226']},{'id': '226', 'type': 'assignment', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'angle'},{'id': '228', 'type': 'call', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'vec_angle'},{'id': '230', 'type': 'argument_list', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'vec_2_1'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'vec_2_3'},{'id': '233', 'type': 'return_statement', 'children': ['234']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'angle'} | def angle_single(self, g_num, at_1, at_2, at_3):
import numpy as np
from .utils import safe_cast as scast
from .utils.vector import vec_angle
if not(-self.num_atoms <= at_1 < self.num_atoms):
raise IndexError("Invalid index for 'at_1' ({0})".format(at_1))
if not(-self.num_atoms <= at_2 < self.num_atoms):
raise IndexError("Invalid index for 'at_2' ({0})".format(at_2))
if not(-self.num_atoms <= at_3 < self.num_atoms):
raise IndexError("Invalid index for 'at_3' ({0})".format(at_3))
at_1 = scast(np.floor(at_1), np.int_)
at_2 = scast(np.floor(at_2), np.int_)
at_3 = scast(np.floor(at_3), np.int_)
if (at_2 % self.num_atoms) == (at_1 % self.num_atoms):
raise ValueError("'at_1' and 'at_2' must be different")
if (at_2 % self.num_atoms) == (at_3 % self.num_atoms):
raise ValueError("'at_2' and 'at_3' must be different")
if (at_1 % self.num_atoms) == (at_3 % self.num_atoms):
return 0.0
vec_2_1 = self.displ_single(g_num, at_2, at_1)
vec_2_3 = self.displ_single(g_num, at_2, at_3)
angle = vec_angle(vec_2_1, vec_2_3)
return angle |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'angle_iter'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'ats_3'},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'invalid_error'},{'id': '11', 'type': 'False', 'children': []},{'id': '12', 'type': 'block', 'children': ['13', '20', '63', '75', '83', '91']},{'id': '13', 'type': 'import_from_statement', 'children': ['14', '18']},{'id': '14', 'type': 'relative_import', 'children': ['15', '16']},{'id': '15', 'type': 'import_prefix', 'children': []},{'id': '16', 'type': 'dotted_name', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '18', 'type': 'dotted_name', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'pack_tups'},{'id': '20', 'type': 'if_statement', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '22', 'type': 'block', 'children': ['23', '33', '43', '53']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'string', 'children': [], 'value': '"g_nums = {0}"'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'string', 'children': [], 'value': '"ats_1 = {0}"'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'string', 'children': [], 'value': '"ats_2 = {0}"'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'string', 'children': [], 'value': '"ats_3 = {0}"'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'ats_3'},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '66', 'type': 'call', 'children': ['67', '70']},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '69', 'type': 'identifier', 'children': [], 'value': '_none_subst'},{'id': '70', 'type': 'argument_list', 'children': ['71', '72', '73', '74']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'ats_3'},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '78', 'type': 'call', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'pack_tups'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'list_splat', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '83', 'type': 'if_statement', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '85', 'type': 'block', 'children': ['86']},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'call', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '91', 'type': 'for_statement', 'children': ['92', '93', '94']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'tup'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '94', 'type': 'block', 'children': ['95', '103']},{'id': '95', 'type': 'if_statement', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '97', 'type': 'block', 'children': ['98']},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'tup'},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'yield', 'children': ['105']},{'id': '105', 'type': 'call', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '108', 'type': 'identifier', 'children': [], 'value': '_iter_return'},{'id': '109', 'type': 'argument_list', 'children': ['110', '111', '114']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'tup'},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'angle_single'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'invalid_error'} | def angle_iter(self, g_nums, ats_1, ats_2, ats_3, invalid_error=False):
from .utils import pack_tups
if _DEBUG:
print("g_nums = {0}".format(g_nums))
print("ats_1 = {0}".format(ats_1))
print("ats_2 = {0}".format(ats_2))
print("ats_3 = {0}".format(ats_3))
arglist = self._none_subst(g_nums, ats_1, ats_2, ats_3)
tups = pack_tups(*arglist)
if _DEBUG:
print(tups)
for tup in tups:
if _DEBUG:
print(tup)
yield self._iter_return(tup, self.angle_single, invalid_error) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'dihed_iter'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'ats_3'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'ats_4'},{'id': '10', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'invalid_error'},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '22', '75', '88', '96', '104']},{'id': '15', 'type': 'import_from_statement', 'children': ['16', '20']},{'id': '16', 'type': 'relative_import', 'children': ['17', '18']},{'id': '17', 'type': 'import_prefix', 'children': []},{'id': '18', 'type': 'dotted_name', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '20', 'type': 'dotted_name', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'pack_tups'},{'id': '22', 'type': 'if_statement', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '24', 'type': 'block', 'children': ['25', '35', '45', '55', '65']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'call', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'string', 'children': [], 'value': '"g_nums = {0}"'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'call', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'string', 'children': [], 'value': '"ats_1 = {0}"'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'string', 'children': [], 'value': '"ats_2 = {0}"'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'call', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'string', 'children': [], 'value': '"ats_3 = {0}"'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'ats_3'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'string', 'children': [], 'value': '"ats_4 = {0}"'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'ats_4'},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '81', 'type': 'identifier', 'children': [], 'value': '_none_subst'},{'id': '82', 'type': 'argument_list', 'children': ['83', '84', '85', '86', '87']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'ats_3'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'ats_4'},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'assignment', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '91', 'type': 'call', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'pack_tups'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'list_splat', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '96', 'type': 'if_statement', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '98', 'type': 'block', 'children': ['99']},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'call', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '102', 'type': 'argument_list', 'children': ['103']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '104', 'type': 'for_statement', 'children': ['105', '106', '107']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'tup'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '107', 'type': 'block', 'children': ['108']},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'yield', 'children': ['110']},{'id': '110', 'type': 'call', 'children': ['111', '114']},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '113', 'type': 'identifier', 'children': [], 'value': '_iter_return'},{'id': '114', 'type': 'argument_list', 'children': ['115', '116', '119']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'tup'},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'dihed_single'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'invalid_error'} | def dihed_iter(self, g_nums, ats_1, ats_2, ats_3, ats_4, \
invalid_error=False):
from .utils import pack_tups
if _DEBUG:
print("g_nums = {0}".format(g_nums))
print("ats_1 = {0}".format(ats_1))
print("ats_2 = {0}".format(ats_2))
print("ats_3 = {0}".format(ats_3))
print("ats_4 = {0}".format(ats_4))
arglist = self._none_subst(g_nums, ats_1, ats_2, ats_3, ats_4)
tups = pack_tups(*arglist)
if _DEBUG:
print(tups)
for tup in tups:
yield self._iter_return(tup, self.dihed_single, invalid_error) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'displ_single'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'g_num'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '8', 'type': 'block', 'children': ['9', '14', '23', '46', '69', '84', '99', '124', '133', '163']},{'id': '9', 'type': 'import_statement', 'children': ['10']},{'id': '10', 'type': 'aliased_import', 'children': ['11', '13']},{'id': '11', 'type': 'dotted_name', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '14', 'type': 'import_from_statement', 'children': ['15', '19']},{'id': '15', 'type': 'relative_import', 'children': ['16', '17']},{'id': '16', 'type': 'import_prefix', 'children': []},{'id': '17', 'type': 'dotted_name', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '19', 'type': 'aliased_import', 'children': ['20', '22']},{'id': '20', 'type': 'dotted_name', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'safe_cast'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '23', 'type': 'if_statement', 'children': ['24', '35']},{'id': '24', 'type': 'not_operator', 'children': ['25']},{'id': '25', 'type': '()', 'children': ['26']},{'id': '26', 'type': 'comparison_operator', 'children': ['27', '31', '32'], 'value': '<='},{'id': '27', 'type': 'unary_operator', 'children': ['28'], 'value': '-'},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '35', 'type': 'block', 'children': ['36']},{'id': '36', 'type': 'raise_statement', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'string', 'children': [], 'value': '"Invalid index for \'at_1\' ({0})"'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '46', 'type': 'if_statement', 'children': ['47', '58']},{'id': '47', 'type': 'not_operator', 'children': ['48']},{'id': '48', 'type': '()', 'children': ['49']},{'id': '49', 'type': 'comparison_operator', 'children': ['50', '54', '55'], 'value': '<='},{'id': '50', 'type': 'unary_operator', 'children': ['51'], 'value': '-'},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '58', 'type': 'block', 'children': ['59']},{'id': '59', 'type': 'raise_statement', 'children': ['60']},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'string', 'children': [], 'value': '"Invalid index for \'at_2\' ({0})"'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '72', 'type': 'call', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '74', 'type': 'argument_list', 'children': ['75', '81']},{'id': '75', 'type': 'call', 'children': ['76', '79']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'floor'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'int_'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '87', 'type': 'call', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'scast'},{'id': '89', 'type': 'argument_list', 'children': ['90', '96']},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'floor'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'int_'},{'id': '99', 'type': 'if_statement', 'children': ['100', '113']},{'id': '100', 'type': 'comparison_operator', 'children': ['101', '107'], 'value': '=='},{'id': '101', 'type': '()', 'children': ['102']},{'id': '102', 'type': 'binary_operator', 'children': ['103', '104'], 'value': '%'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '107', 'type': '()', 'children': ['108']},{'id': '108', 'type': 'binary_operator', 'children': ['109', '110'], 'value': '%'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '113', 'type': 'block', 'children': ['114']},{'id': '114', 'type': 'return_statement', 'children': ['115']},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'list', 'children': ['121', '122', '123'], 'value': '[0.0, 0.0, 0.0]'},{'id': '121', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '122', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '123', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'assignment', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '127', 'type': 'call', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'geom_single'},{'id': '131', 'type': 'argument_list', 'children': ['132']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'g_num'},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'displ'},{'id': '136', 'type': 'call', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'list_comprehension', 'children': ['142', '157']},{'id': '142', 'type': 'binary_operator', 'children': ['143', '150'], 'value': '-'},{'id': '143', 'type': 'subscript', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '145', 'type': 'binary_operator', 'children': ['146', '147'], 'value': '+'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '147', 'type': 'binary_operator', 'children': ['148', '149'], 'value': '*'},{'id': '148', 'type': 'integer', 'children': [], 'value': '3'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'at_2'},{'id': '150', 'type': 'subscript', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '152', 'type': 'binary_operator', 'children': ['153', '154'], 'value': '+'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '154', 'type': 'binary_operator', 'children': ['155', '156'], 'value': '*'},{'id': '155', 'type': 'integer', 'children': [], 'value': '3'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'at_1'},{'id': '157', 'type': 'for_in_clause', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '159', 'type': 'call', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '161', 'type': 'argument_list', 'children': ['162']},{'id': '162', 'type': 'integer', 'children': [], 'value': '3'},{'id': '163', 'type': 'return_statement', 'children': ['164']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'displ'} | def displ_single(self, g_num, at_1, at_2):
import numpy as np
from .utils import safe_cast as scast
if not (-self.num_atoms <= at_1 < self.num_atoms):
raise IndexError("Invalid index for 'at_1' ({0})".format(at_1))
if not (-self.num_atoms <= at_2 < self.num_atoms):
raise IndexError("Invalid index for 'at_2' ({0})".format(at_2))
at_1 = scast(np.floor(at_1), np.int_)
at_2 = scast(np.floor(at_2), np.int_)
if (at_1 % self.num_atoms) == (at_2 % self.num_atoms):
return np.array([0.0, 0.0, 0.0])
g = self.geom_single(g_num)
displ = np.array([ g[i + 3*at_2] - g[i + 3*at_1] for i in range(3) ])
return displ |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'displ_iter'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'invalid_error'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'block', 'children': ['12', '19', '52', '63', '71', '79']},{'id': '12', 'type': 'import_from_statement', 'children': ['13', '17']},{'id': '13', 'type': 'relative_import', 'children': ['14', '15']},{'id': '14', 'type': 'import_prefix', 'children': []},{'id': '15', 'type': 'dotted_name', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '17', 'type': 'dotted_name', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'pack_tups'},{'id': '19', 'type': 'if_statement', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '21', 'type': 'block', 'children': ['22', '32', '42']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '25', 'type': 'argument_list', 'children': ['26']},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'string', 'children': [], 'value': '"g_nums = {0}"'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'string', 'children': [], 'value': '"ats_1 = {0}"'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'string', 'children': [], 'value': '"ats_2 = {0}"'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '55', 'type': 'call', 'children': ['56', '59']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '58', 'type': 'identifier', 'children': [], 'value': '_none_subst'},{'id': '59', 'type': 'argument_list', 'children': ['60', '61', '62']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'g_nums'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'ats_1'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'ats_2'},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'pack_tups'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'list_splat', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '71', 'type': 'if_statement', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': '_DEBUG'},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'call', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '79', 'type': 'for_statement', 'children': ['80', '81', '82']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'tup'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'tups'},{'id': '82', 'type': 'block', 'children': ['83']},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'yield', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '88', 'type': 'identifier', 'children': [], 'value': '_iter_return'},{'id': '89', 'type': 'argument_list', 'children': ['90', '91', '94']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'tup'},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'displ_single'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'invalid_error'} | def displ_iter(self, g_nums, ats_1, ats_2, invalid_error=False):
from .utils import pack_tups
if _DEBUG:
print("g_nums = {0}".format(g_nums))
print("ats_1 = {0}".format(ats_1))
print("ats_2 = {0}".format(ats_2))
arglist = self._none_subst(g_nums, ats_1, ats_2)
tups = pack_tups(*arglist)
if _DEBUG:
print(tups)
for tup in tups:
yield self._iter_return(tup, self.displ_single, invalid_error) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_none_subst'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'list_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '7', 'type': 'block', 'children': ['8', '13', '21', '25', '46', '163']},{'id': '8', 'type': 'import_statement', 'children': ['9']},{'id': '9', 'type': 'aliased_import', 'children': ['10', '12']},{'id': '10', 'type': 'dotted_name', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'assignment', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '16', 'type': 'list_comprehension', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '18', 'type': 'for_in_clause', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'none_found'},{'id': '24', 'type': 'False', 'children': []},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'none_vals'},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '33', 'type': 'argument_list', 'children': ['34', '45']},{'id': '34', 'type': 'lambda', 'children': ['35', '37']},{'id': '35', 'type': 'lambda_parameters', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '39', 'type': 'argument_list', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'None', 'children': []},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '46', 'type': 'if_statement', 'children': ['47', '55', '76']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '54'], 'value': '>'},{'id': '48', 'type': 'call', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'count_nonzero'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'none_vals'},{'id': '54', 'type': 'integer', 'children': [], 'value': '1'},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'raise_statement', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'call', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'string', 'children': [], 'value': '"Multiple \'None\' values [indices {0}] not supported"'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'subscript', 'children': ['69', '75']},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'nonzero'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'none_vals'},{'id': '75', 'type': 'integer', 'children': [], 'value': '0'},{'id': '76', 'type': 'elif_clause', 'children': ['77', '85']},{'id': '77', 'type': 'comparison_operator', 'children': ['78', '84'], 'value': '=='},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'count_nonzero'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'none_vals'},{'id': '84', 'type': 'integer', 'children': [], 'value': '1'},{'id': '85', 'type': 'block', 'children': ['86', '127', '131', '144']},{'id': '86', 'type': 'if_statement', 'children': ['87', '121']},{'id': '87', 'type': 'not_operator', 'children': ['88']},{'id': '88', 'type': 'call', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'equal'},{'id': '95', 'type': 'argument_list', 'children': ['96', '106']},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '101', 'type': 'argument_list', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '106', 'type': 'call', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'call', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '111', 'type': 'argument_list', 'children': ['112', '120']},{'id': '112', 'type': 'lambda', 'children': ['113', '115']},{'id': '113', 'type': 'lambda_parameters', 'children': ['114']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '115', 'type': 'call', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '117', 'type': 'argument_list', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '121', 'type': 'block', 'children': ['122']},{'id': '122', 'type': 'raise_statement', 'children': ['123']},{'id': '123', 'type': 'call', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'string', 'children': [], 'value': '"\'None\' as parameter invalid with non-str iterables"'},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'assignment', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'none_found'},{'id': '130', 'type': 'True', 'children': []},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'assignment', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'none_loc'},{'id': '134', 'type': 'subscript', 'children': ['135', '143']},{'id': '135', 'type': 'subscript', 'children': ['136', '142']},{'id': '136', 'type': 'call', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'nonzero'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'none_vals'},{'id': '142', 'type': 'integer', 'children': [], 'value': '0'},{'id': '143', 'type': 'integer', 'children': [], 'value': '0'},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '149', '150']},{'id': '146', 'type': 'subscript', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'arglist'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'none_loc'},{'id': '149', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'conditional_expression', 'children': ['154', '157', '160'], 'value': 'if'},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'num_geoms'},{'id': '157', 'type': 'comparison_operator', 'children': ['158', '159'], 'value': '=='},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'none_loc'},{'id': '159', 'type': 'integer', 'children': [], 'value': '0'},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'num_atoms'},{'id': '163', 'type': 'return_statement', 'children': ['164']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'arglist'} | def _none_subst(self, *args):
import numpy as np
arglist = [a for a in args]
none_found = False
none_vals = list(map(lambda e: isinstance(e, type(None)), arglist))
if np.count_nonzero(none_vals) > 1:
raise ValueError(
"Multiple 'None' values [indices {0}] not supported"
.format(tuple(np.nonzero(none_vals)[0])))
elif np.count_nonzero(none_vals) == 1:
if not all(np.equal(list(map(np.iterable, arglist)),
list(map(lambda e: isinstance(e, str), arglist)))):
raise ValueError(
"'None' as parameter invalid with non-str iterables")
none_found = True
none_loc = np.nonzero(none_vals)[0][0]
arglist[none_loc] = \
range(self.num_geoms if none_loc == 0 else self.num_atoms)
return arglist |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '24']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'new_from_files'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '12', '13', '18', '19', '22']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'basepath'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '8', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'bohrs'},{'id': '11', 'type': 'False', 'children': []},{'id': '12', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '13', 'type': 'default_parameter', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'software'},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': '_E_SW'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'ORCA'},{'id': '18', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '19', 'type': 'default_parameter', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'repo_clobber'},{'id': '21', 'type': 'False', 'children': []},{'id': '22', 'type': 'dictionary_splat_pattern', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '24', 'type': 'block', 'children': ['25', '28', '35', '44', '53', '62', '71', '84', '93', '100', '109', '126', '143', '160', '177', '199', '227', '255', '270', '300', '315', '342']},{'id': '25', 'type': 'import_statement', 'children': ['26']},{'id': '26', 'type': 'dotted_name', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '28', 'type': 'import_from_statement', 'children': ['29', '31']},{'id': '29', 'type': 'dotted_name', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '31', 'type': 'aliased_import', 'children': ['32', '34']},{'id': '32', 'type': 'dotted_name', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '35', 'type': 'import_from_statement', 'children': ['36', '40']},{'id': '36', 'type': 'relative_import', 'children': ['37', '38']},{'id': '37', 'type': 'import_prefix', 'children': []},{'id': '38', 'type': 'dotted_name', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'xyz'},{'id': '40', 'type': 'aliased_import', 'children': ['41', '43']},{'id': '41', 'type': 'dotted_name', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'OpanXYZ'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'OX'},{'id': '44', 'type': 'import_from_statement', 'children': ['45', '49']},{'id': '45', 'type': 'relative_import', 'children': ['46', '47']},{'id': '46', 'type': 'import_prefix', 'children': []},{'id': '47', 'type': 'dotted_name', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'grad'},{'id': '49', 'type': 'aliased_import', 'children': ['50', '52']},{'id': '50', 'type': 'dotted_name', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'OrcaEngrad'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'OE'},{'id': '53', 'type': 'import_from_statement', 'children': ['54', '58']},{'id': '54', 'type': 'relative_import', 'children': ['55', '56']},{'id': '55', 'type': 'import_prefix', 'children': []},{'id': '56', 'type': 'dotted_name', 'children': ['57']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'hess'},{'id': '58', 'type': 'aliased_import', 'children': ['59', '61']},{'id': '59', 'type': 'dotted_name', 'children': ['60']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'OrcaHess'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'OH'},{'id': '62', 'type': 'import_from_statement', 'children': ['63', '67']},{'id': '63', 'type': 'relative_import', 'children': ['64', '65']},{'id': '64', 'type': 'import_prefix', 'children': []},{'id': '65', 'type': 'dotted_name', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '67', 'type': 'aliased_import', 'children': ['68', '70']},{'id': '68', 'type': 'dotted_name', 'children': ['69']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'OpanAnharmRepo'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'OR'},{'id': '71', 'type': 'import_from_statement', 'children': ['72', '76', '80']},{'id': '72', 'type': 'relative_import', 'children': ['73', '74']},{'id': '73', 'type': 'import_prefix', 'children': []},{'id': '74', 'type': 'dotted_name', 'children': ['75']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '76', 'type': 'aliased_import', 'children': ['77', '79']},{'id': '77', 'type': 'dotted_name', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'EnumDispDirection'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'E_DDir'},{'id': '80', 'type': 'aliased_import', 'children': ['81', '83']},{'id': '81', 'type': 'dotted_name', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'EnumFileType'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'E_FT'},{'id': '84', 'type': 'import_from_statement', 'children': ['85', '89']},{'id': '85', 'type': 'relative_import', 'children': ['86', '87']},{'id': '86', 'type': 'import_prefix', 'children': []},{'id': '87', 'type': 'dotted_name', 'children': ['88']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '89', 'type': 'aliased_import', 'children': ['90', '92']},{'id': '90', 'type': 'dotted_name', 'children': ['91']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'EnumSoftware'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'E_SW'},{'id': '93', 'type': 'import_from_statement', 'children': ['94', '98']},{'id': '94', 'type': 'relative_import', 'children': ['95', '96']},{'id': '95', 'type': 'import_prefix', 'children': []},{'id': '96', 'type': 'dotted_name', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '98', 'type': 'dotted_name', 'children': ['99']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'DEF'},{'id': '100', 'type': 'import_from_statement', 'children': ['101', '105']},{'id': '101', 'type': 'relative_import', 'children': ['102', '103']},{'id': '102', 'type': 'import_prefix', 'children': []},{'id': '103', 'type': 'dotted_name', 'children': ['104']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '105', 'type': 'aliased_import', 'children': ['106', '108']},{'id': '106', 'type': 'dotted_name', 'children': ['107']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'AnharmError'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'ANHErr'},{'id': '109', 'type': 'if_statement', 'children': ['110', '116']},{'id': '110', 'type': 'not_operator', 'children': ['111']},{'id': '111', 'type': 'comparison_operator', 'children': ['112', '115'], 'value': '=='},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'w_xyz'},{'id': '115', 'type': 'None', 'children': []},{'id': '116', 'type': 'block', 'children': ['117']},{'id': '117', 'type': 'raise_statement', 'children': ['118']},{'id': '118', 'type': 'call', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'ANHErr'},{'id': '120', 'type': 'argument_list', 'children': ['121', '124', '125']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'ANHErr'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'STATUS'},{'id': '124', 'type': 'string', 'children': [], 'value': '"XYZ object is already bound"'},{'id': '125', 'type': 'string', 'children': [], 'value': '""'},{'id': '126', 'type': 'if_statement', 'children': ['127', '133']},{'id': '127', 'type': 'not_operator', 'children': ['128']},{'id': '128', 'type': 'comparison_operator', 'children': ['129', '132'], 'value': '=='},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'w_grad'},{'id': '132', 'type': 'None', 'children': []},{'id': '133', 'type': 'block', 'children': ['134']},{'id': '134', 'type': 'raise_statement', 'children': ['135']},{'id': '135', 'type': 'call', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'ANHErr'},{'id': '137', 'type': 'argument_list', 'children': ['138', '141', '142']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'ANHErr'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'STATUS'},{'id': '141', 'type': 'string', 'children': [], 'value': '"GRAD object is already bound"'},{'id': '142', 'type': 'string', 'children': [], 'value': '""'},{'id': '143', 'type': 'if_statement', 'children': ['144', '150']},{'id': '144', 'type': 'not_operator', 'children': ['145']},{'id': '145', 'type': 'comparison_operator', 'children': ['146', '149'], 'value': '=='},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'w_hess'},{'id': '149', 'type': 'None', 'children': []},{'id': '150', 'type': 'block', 'children': ['151']},{'id': '151', 'type': 'raise_statement', 'children': ['152']},{'id': '152', 'type': 'call', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'ANHErr'},{'id': '154', 'type': 'argument_list', 'children': ['155', '158', '159']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'ANHErr'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'STATUS'},{'id': '158', 'type': 'string', 'children': [], 'value': '"HESS object is already bound"'},{'id': '159', 'type': 'string', 'children': [], 'value': '""'},{'id': '160', 'type': 'if_statement', 'children': ['161', '167']},{'id': '161', 'type': 'not_operator', 'children': ['162']},{'id': '162', 'type': 'comparison_operator', 'children': ['163', '166'], 'value': '=='},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '166', 'type': 'None', 'children': []},{'id': '167', 'type': 'block', 'children': ['168']},{'id': '168', 'type': 'raise_statement', 'children': ['169']},{'id': '169', 'type': 'call', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'ANHErr'},{'id': '171', 'type': 'argument_list', 'children': ['172', '175', '176']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'ANHErr'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'STATUS'},{'id': '175', 'type': 'string', 'children': [], 'value': '"Repository object is already bound"'},{'id': '176', 'type': 'string', 'children': [], 'value': '""'},{'id': '177', 'type': 'expression_statement', 'children': ['178']},{'id': '178', 'type': 'assignment', 'children': ['179', '182']},{'id': '179', 'type': 'attribute', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'w_xyz'},{'id': '182', 'type': 'call', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'OX'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'call', 'children': ['186', '189']},{'id': '186', 'type': 'attribute', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '189', 'type': 'argument_list', 'children': ['190', '191', '192']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'basepath'},{'id': '191', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '192', 'type': 'binary_operator', 'children': ['193', '198'], 'value': '+'},{'id': '193', 'type': 'binary_operator', 'children': ['194', '195'], 'value': '+'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '195', 'type': 'attribute', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'extsep'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'xyz_ext'},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '204']},{'id': '201', 'type': 'attribute', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'w_grad'},{'id': '204', 'type': 'call', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'OE'},{'id': '206', 'type': 'argument_list', 'children': ['207', '221', '222', '223', '226']},{'id': '207', 'type': 'call', 'children': ['208', '211']},{'id': '208', 'type': 'attribute', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '211', 'type': 'argument_list', 'children': ['212', '213', '214']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'basepath'},{'id': '213', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '214', 'type': 'binary_operator', 'children': ['215', '220'], 'value': '+'},{'id': '215', 'type': 'binary_operator', 'children': ['216', '217'], 'value': '+'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '217', 'type': 'attribute', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'extsep'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'engrad_ext'},{'id': '221', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '222', 'type': 'integer', 'children': [], 'value': '0'},{'id': '223', 'type': 'attribute', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'E_DDir'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'NO_DISP'},{'id': '226', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '227', 'type': 'expression_statement', 'children': ['228']},{'id': '228', 'type': 'assignment', 'children': ['229', '232']},{'id': '229', 'type': 'attribute', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'w_hess'},{'id': '232', 'type': 'call', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'OH'},{'id': '234', 'type': 'argument_list', 'children': ['235', '249', '250', '251', '254']},{'id': '235', 'type': 'call', 'children': ['236', '239']},{'id': '236', 'type': 'attribute', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '239', 'type': 'argument_list', 'children': ['240', '241', '242']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'basepath'},{'id': '241', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '242', 'type': 'binary_operator', 'children': ['243', '248'], 'value': '+'},{'id': '243', 'type': 'binary_operator', 'children': ['244', '245'], 'value': '+'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '245', 'type': 'attribute', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'extsep'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'hess_ext'},{'id': '249', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '250', 'type': 'integer', 'children': [], 'value': '0'},{'id': '251', 'type': 'attribute', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'E_DDir'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'NO_DISP'},{'id': '254', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '255', 'type': 'if_statement', 'children': ['256', '262']},{'id': '256', 'type': 'not_operator', 'children': ['257']},{'id': '257', 'type': 'call', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '259', 'type': 'argument_list', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '262', 'type': 'block', 'children': ['263']},{'id': '263', 'type': 'raise_statement', 'children': ['264']},{'id': '264', 'type': 'call', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '266', 'type': 'argument_list', 'children': ['267']},{'id': '267', 'type': 'binary_operator', 'children': ['268', '269'], 'value': '+'},{'id': '268', 'type': 'string', 'children': [], 'value': '"Must create new repository when loading "'},{'id': '269', 'type': 'string', 'children': [], 'value': '"a new dataset."'},{'id': '270', 'type': 'if_statement', 'children': ['271', '289']},{'id': '271', 'type': 'boolean_operator', 'children': ['272', '282'], 'value': 'and'},{'id': '272', 'type': 'comparison_operator', 'children': ['273', '281'], 'value': '>'},{'id': '273', 'type': 'call', 'children': ['274', '277']},{'id': '274', 'type': 'attribute', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '277', 'type': 'argument_list', 'children': ['278']},{'id': '278', 'type': 'subscript', 'children': ['279', '280']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '280', 'type': 'integer', 'children': [], 'value': '0'},{'id': '281', 'type': 'integer', 'children': [], 'value': '0'},{'id': '282', 'type': 'not_operator', 'children': ['283']},{'id': '283', 'type': 'call', 'children': ['284', '287']},{'id': '284', 'type': 'attribute', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'isabs'},{'id': '287', 'type': 'argument_list', 'children': ['288']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '289', 'type': 'block', 'children': ['290']},{'id': '290', 'type': 'expression_statement', 'children': ['291']},{'id': '291', 'type': 'assignment', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '293', 'type': 'call', 'children': ['294', '297']},{'id': '294', 'type': 'attribute', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '297', 'type': 'argument_list', 'children': ['298', '299']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'basepath'},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '300', 'type': 'if_statement', 'children': ['301', '307']},{'id': '301', 'type': 'call', 'children': ['302', '305']},{'id': '302', 'type': 'attribute', 'children': ['303', '304']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'isdir'},{'id': '305', 'type': 'argument_list', 'children': ['306']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '307', 'type': 'block', 'children': ['308']},{'id': '308', 'type': 'raise_statement', 'children': ['309']},{'id': '309', 'type': 'call', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'IOError'},{'id': '311', 'type': 'argument_list', 'children': ['312']},{'id': '312', 'type': 'binary_operator', 'children': ['313', '314'], 'value': '+'},{'id': '313', 'type': 'string', 'children': [], 'value': '"Cannot bind repository -- specified "'},{'id': '314', 'type': 'string', 'children': [], 'value': '"location is a directory"'},{'id': '315', 'type': 'if_statement', 'children': ['316', '322']},{'id': '316', 'type': 'call', 'children': ['317', '320']},{'id': '317', 'type': 'attribute', 'children': ['318', '319']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'osp'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'isfile'},{'id': '320', 'type': 'argument_list', 'children': ['321']},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '322', 'type': 'block', 'children': ['323']},{'id': '323', 'type': 'if_statement', 'children': ['324', '325', '333']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'repo_clobber'},{'id': '325', 'type': 'block', 'children': ['326']},{'id': '326', 'type': 'expression_statement', 'children': ['327']},{'id': '327', 'type': 'call', 'children': ['328', '331']},{'id': '328', 'type': 'attribute', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '331', 'type': 'argument_list', 'children': ['332']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '333', 'type': 'else_clause', 'children': ['334']},{'id': '334', 'type': 'block', 'children': ['335']},{'id': '335', 'type': 'raise_statement', 'children': ['336']},{'id': '336', 'type': 'call', 'children': ['337', '338']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'IOError'},{'id': '338', 'type': 'argument_list', 'children': ['339']},{'id': '339', 'type': 'binary_operator', 'children': ['340', '341'], 'value': '+'},{'id': '340', 'type': 'string', 'children': [], 'value': '"Target repository file exists and "'},{'id': '341', 'type': 'string', 'children': [], 'value': '"clobber is disabled."'},{'id': '342', 'type': 'expression_statement', 'children': ['343']},{'id': '343', 'type': 'assignment', 'children': ['344', '347']},{'id': '344', 'type': 'attribute', 'children': ['345', '346']},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'repo'},{'id': '347', 'type': 'call', 'children': ['348', '349']},{'id': '348', 'type': 'identifier', 'children': [], 'value': 'OR'},{'id': '349', 'type': 'argument_list', 'children': ['350']},{'id': '350', 'type': 'identifier', 'children': [], 'value': 'repo'} | def new_from_files(self, basepath, basename, repo, \
bohrs=False, \
software=_E_SW.ORCA, \
repo_clobber=False, **kwargs):
import os
from os import path as osp
from ..xyz import OpanXYZ as OX
from ..grad import OrcaEngrad as OE
from ..hess import OrcaHess as OH
from .repo import OpanAnharmRepo as OR
from ..const import EnumDispDirection as E_DDir, EnumFileType as E_FT
from ..const import EnumSoftware as E_SW
from ..const import DEF
from ..error import AnharmError as ANHErr
if not self.w_xyz == None:
raise ANHErr(ANHErr.STATUS,
"XYZ object is already bound",
"")
if not self.w_grad == None:
raise ANHErr(ANHErr.STATUS,
"GRAD object is already bound",
"")
if not self.w_hess == None:
raise ANHErr(ANHErr.STATUS,
"HESS object is already bound",
"")
if not self.repo == None:
raise ANHErr(ANHErr.STATUS,
"Repository object is already bound",
"")
self.w_xyz = OX( osp.join(basepath, \
basename + osp.extsep + xyz_ext) )
self.w_grad = OE( osp.join(basepath, \
basename + osp.extsep + engrad_ext), \
0, E_DDir.NO_DISP, 0.0 )
self.w_hess = OH( osp.join(basepath, \
basename + osp.extsep + hess_ext), \
0, E_DDir.NO_DISP, 0.0 )
if not isinstance(repo, str):
raise TypeError("Must create new repository when loading " +
"a new dataset.")
if osp.split(repo[0]) > 0 and not osp.isabs(repo):
repo = osp.join(basepath, repo)
if osp.isdir(repo):
raise IOError("Cannot bind repository -- specified " +
"location is a directory")
if osp.isfile(repo):
if repo_clobber:
os.remove(repo)
else:
raise IOError("Target repository file exists and " +
"clobber is disabled.")
self.repo = OR(repo) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'from_locus_read'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'n_ref'},{'id': '7', 'type': 'block', 'children': ['8', '14', '20', '26', '32', '38', '53', '59', '74', '155', '166', '176', '184', '194', '204']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'reference_positions'},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'reference_positions'},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'read_pos_before'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'base0_read_position_before_variant'},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'read_pos_after'},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'base0_read_position_after_variant'},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'ref_pos_before'},{'id': '35', 'type': 'subscript', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'reference_positions'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'read_pos_before'},{'id': '38', 'type': 'if_statement', 'children': ['39', '42']},{'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': 'is'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'ref_pos_before'},{'id': '41', 'type': 'None', 'children': []},{'id': '42', 'type': 'block', 'children': ['43', '51']},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '48', 'type': 'argument_list', 'children': ['49', '50']},{'id': '49', 'type': 'string', 'children': [], 'value': '"Missing reference pos for nucleotide before variant on read: %s"'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '51', 'type': 'return_statement', 'children': ['52']},{'id': '52', 'type': 'None', 'children': []},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'ref_pos_after'},{'id': '56', 'type': 'subscript', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'reference_positions'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'read_pos_after'},{'id': '59', 'type': 'if_statement', 'children': ['60', '63']},{'id': '60', 'type': 'comparison_operator', 'children': ['61', '62'], 'value': 'is'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'ref_pos_after'},{'id': '62', 'type': 'None', 'children': []},{'id': '63', 'type': 'block', 'children': ['64', '72']},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'call', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '69', 'type': 'argument_list', 'children': ['70', '71']},{'id': '70', 'type': 'string', 'children': [], 'value': '"Missing reference pos for nucleotide after variant on read: %s"'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '72', 'type': 'return_statement', 'children': ['73']},{'id': '73', 'type': 'None', 'children': []},{'id': '74', 'type': 'if_statement', 'children': ['75', '78', '129']},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '77'], 'value': '=='},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'n_ref'},{'id': '77', 'type': 'integer', 'children': [], 'value': '0'},{'id': '78', 'type': 'block', 'children': ['79', '98', '109']},{'id': '79', 'type': 'if_statement', 'children': ['80', '85']},{'id': '80', 'type': 'comparison_operator', 'children': ['81', '84'], 'value': '!='},{'id': '81', 'type': 'binary_operator', 'children': ['82', '83'], 'value': '-'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'ref_pos_after'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'ref_pos_before'},{'id': '84', 'type': 'integer', 'children': [], 'value': '1'},{'id': '85', 'type': 'block', 'children': ['86', '96']},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'call', 'children': ['88', '91']},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '91', 'type': 'argument_list', 'children': ['92', '93', '94', '95']},{'id': '92', 'type': 'string', 'children': [], 'value': '"Positions before (%d) and after (%d) variant should be adjacent on read %s"'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'ref_pos_before'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'ref_pos_after'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '96', 'type': 'return_statement', 'children': ['97']},{'id': '97', 'type': 'None', 'children': []},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'ref_positions_for_inserted'},{'id': '101', 'type': 'subscript', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'reference_positions'},{'id': '103', 'type': 'slice', 'children': ['104', '107', '108']},{'id': '104', 'type': 'binary_operator', 'children': ['105', '106'], 'value': '+'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'read_pos_before'},{'id': '106', 'type': 'integer', 'children': [], 'value': '1'},{'id': '107', 'type': 'colon', 'children': []},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'read_pos_after'},{'id': '109', 'type': 'if_statement', 'children': ['110', '119']},{'id': '110', 'type': 'call', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '112', 'type': 'generator_expression', 'children': ['113', '116']},{'id': '113', 'type': 'comparison_operator', 'children': ['114', '115'], 'value': 'is'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'insert_pos'},{'id': '115', 'type': 'None', 'children': []},{'id': '116', 'type': 'for_in_clause', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'insert_pos'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'ref_positions_for_inserted'},{'id': '119', 'type': 'block', 'children': ['120', '127']},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'call', 'children': ['122', '125']},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'string', 'children': [], 'value': '"Skipping read, inserted nucleotides shouldn\'t map to reference"'},{'id': '127', 'type': 'return_statement', 'children': ['128']},{'id': '128', 'type': 'None', 'children': []},{'id': '129', 'type': 'else_clause', 'children': ['130']},{'id': '130', 'type': 'block', 'children': ['131']},{'id': '131', 'type': 'if_statement', 'children': ['132', '139']},{'id': '132', 'type': 'comparison_operator', 'children': ['133', '136'], 'value': '!='},{'id': '133', 'type': 'binary_operator', 'children': ['134', '135'], 'value': '-'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'ref_pos_after'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'ref_pos_before'},{'id': '136', 'type': 'binary_operator', 'children': ['137', '138'], 'value': '+'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'n_ref'},{'id': '138', 'type': 'integer', 'children': [], 'value': '1'},{'id': '139', 'type': 'block', 'children': ['140', '153']},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'call', 'children': ['142', '145']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '145', 'type': 'argument_list', 'children': ['146', '150', '151', '152']},{'id': '146', 'type': '()', 'children': ['147']},{'id': '147', 'type': 'concatenated_string', 'children': ['148', '149']},{'id': '148', 'type': 'string', 'children': [], 'value': '"Positions before (%d) and after (%d) variant should be "'},{'id': '149', 'type': 'string', 'children': [], 'value': '"adjacent on read %s"'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'ref_pos_before'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'ref_pos_after'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '153', 'type': 'return_statement', 'children': ['154']},{'id': '154', 'type': 'None', 'children': []},{'id': '155', 'type': 'expression_statement', 'children': ['156']},{'id': '156', 'type': 'assignment', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'nucleotides_at_variant_locus'},{'id': '158', 'type': 'subscript', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '160', 'type': 'slice', 'children': ['161', '164', '165']},{'id': '161', 'type': 'binary_operator', 'children': ['162', '163'], 'value': '+'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'read_pos_before'},{'id': '163', 'type': 'integer', 'children': [], 'value': '1'},{'id': '164', 'type': 'colon', 'children': []},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'read_pos_after'},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '169', 'type': 'subscript', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '171', 'type': 'slice', 'children': ['172', '173']},{'id': '172', 'type': 'colon', 'children': []},{'id': '173', 'type': 'binary_operator', 'children': ['174', '175'], 'value': '+'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'read_pos_before'},{'id': '175', 'type': 'integer', 'children': [], 'value': '1'},{'id': '176', 'type': 'expression_statement', 'children': ['177']},{'id': '177', 'type': 'assignment', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'suffix'},{'id': '179', 'type': 'subscript', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '181', 'type': 'slice', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'read_pos_after'},{'id': '183', 'type': 'colon', 'children': []},{'id': '184', 'type': 'expression_statement', 'children': ['185']},{'id': '185', 'type': 'assignment', 'children': ['186', '189']},{'id': '186', 'type': 'pattern_list', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'suffix'},{'id': '189', 'type': 'call', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'convert_from_bytes_if_necessary'},{'id': '191', 'type': 'argument_list', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'suffix'},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'assignment', 'children': ['196', '199']},{'id': '196', 'type': 'pattern_list', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'suffix'},{'id': '199', 'type': 'call', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'trim_N_nucleotides'},{'id': '201', 'type': 'argument_list', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'suffix'},{'id': '204', 'type': 'return_statement', 'children': ['205']},{'id': '205', 'type': 'call', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '207', 'type': 'argument_list', 'children': ['208', '209', '210', '211']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'nucleotides_at_variant_locus'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'suffix'},{'id': '211', 'type': 'keyword_argument', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '213', 'type': 'attribute', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'locus_read'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'name'} | def from_locus_read(cls, locus_read, n_ref):
sequence = locus_read.sequence
reference_positions = locus_read.reference_positions
read_pos_before = locus_read.base0_read_position_before_variant
read_pos_after = locus_read.base0_read_position_after_variant
ref_pos_before = reference_positions[read_pos_before]
if ref_pos_before is None:
logger.warn(
"Missing reference pos for nucleotide before variant on read: %s",
locus_read)
return None
ref_pos_after = reference_positions[read_pos_after]
if ref_pos_after is None:
logger.warn(
"Missing reference pos for nucleotide after variant on read: %s",
locus_read)
return None
if n_ref == 0:
if ref_pos_after - ref_pos_before != 1:
logger.debug(
"Positions before (%d) and after (%d) variant should be adjacent on read %s",
ref_pos_before,
ref_pos_after,
locus_read)
return None
ref_positions_for_inserted = reference_positions[
read_pos_before + 1:read_pos_after]
if any(insert_pos is not None for insert_pos in ref_positions_for_inserted):
logger.debug(
"Skipping read, inserted nucleotides shouldn't map to reference")
return None
else:
if ref_pos_after - ref_pos_before != n_ref + 1:
logger.debug(
("Positions before (%d) and after (%d) variant should be "
"adjacent on read %s"),
ref_pos_before,
ref_pos_after,
locus_read)
return None
nucleotides_at_variant_locus = sequence[read_pos_before + 1:read_pos_after]
prefix = sequence[:read_pos_before + 1]
suffix = sequence[read_pos_after:]
prefix, suffix = convert_from_bytes_if_necessary(prefix, suffix)
prefix, suffix = trim_N_nucleotides(prefix, suffix)
return cls(
prefix,
nucleotides_at_variant_locus,
suffix,
name=locus_read.name) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'mtx_refl'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '7', 'type': 'integer', 'children': [], 'value': '1'},{'id': '8', 'type': 'block', 'children': ['9', '14', '21', '28', '45', '63', '77', '95', '106', '124', '182', '199']},{'id': '9', 'type': 'import_statement', 'children': ['10']},{'id': '10', 'type': 'aliased_import', 'children': ['11', '13']},{'id': '11', 'type': 'dotted_name', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '14', 'type': 'import_from_statement', 'children': ['15', '17']},{'id': '15', 'type': 'dotted_name', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '17', 'type': 'aliased_import', 'children': ['18', '20']},{'id': '18', 'type': 'dotted_name', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'linalg'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '21', 'type': 'import_from_statement', 'children': ['22', '26']},{'id': '22', 'type': 'relative_import', 'children': ['23', '24']},{'id': '23', 'type': 'import_prefix', 'children': []},{'id': '24', 'type': 'dotted_name', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '26', 'type': 'dotted_name', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '28', 'type': 'if_statement', 'children': ['29', '39']},{'id': '29', 'type': 'comparison_operator', 'children': ['30', '36'], 'value': '<'},{'id': '30', 'type': 'call', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'ZERO_VEC_TOL'},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'raise_statement', 'children': ['41']},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'string', 'children': [], 'value': '"Norm of \'nv\' is too small."'},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'make_nd_vec'},{'id': '50', 'type': 'argument_list', 'children': ['51', '52', '55', '60']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'nd'},{'id': '54', 'type': 'integer', 'children': [], 'value': '3'},{'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'float64'},{'id': '60', 'type': 'keyword_argument', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '62', 'type': 'True', 'children': []},{'id': '63', 'type': 'if_statement', 'children': ['64', '71']},{'id': '64', 'type': 'not_operator', 'children': ['65']},{'id': '65', 'type': 'call', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'isscalar'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '71', 'type': 'block', 'children': ['72']},{'id': '72', 'type': 'raise_statement', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'string', 'children': [], 'value': '"\'reps\' must be scalar."'},{'id': '77', 'type': 'if_statement', 'children': ['78', '89']},{'id': '78', 'type': 'not_operator', 'children': ['79']},{'id': '79', 'type': 'call', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'issubdtype'},{'id': '83', 'type': 'argument_list', 'children': ['84', '88']},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '89', 'type': 'block', 'children': ['90']},{'id': '90', 'type': 'raise_statement', 'children': ['91']},{'id': '91', 'type': 'call', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'string', 'children': [], 'value': '"\'reps\' must be an integer."'},{'id': '95', 'type': 'if_statement', 'children': ['96', '100']},{'id': '96', 'type': 'not_operator', 'children': ['97']},{'id': '97', 'type': 'comparison_operator', 'children': ['98', '99'], 'value': '>'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '99', 'type': 'integer', 'children': [], 'value': '0'},{'id': '100', 'type': 'block', 'children': ['101']},{'id': '101', 'type': 'raise_statement', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': 'string', 'children': [], 'value': '"\'reps\' must be a positive integer."'},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'assignment', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'base_mtx'},{'id': '109', 'type': 'call', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '113', 'type': 'argument_list', 'children': ['114', '119']},{'id': '114', 'type': 'keyword_argument', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '116', 'type': 'tuple', 'children': ['117', '118']},{'id': '117', 'type': 'integer', 'children': [], 'value': '3'},{'id': '118', 'type': 'integer', 'children': [], 'value': '3'},{'id': '119', 'type': 'keyword_argument', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'float64'},{'id': '124', 'type': 'for_statement', 'children': ['125', '126', '130']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '126', 'type': 'call', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '128', 'type': 'argument_list', 'children': ['129']},{'id': '129', 'type': 'integer', 'children': [], 'value': '3'},{'id': '130', 'type': 'block', 'children': ['131']},{'id': '131', 'type': 'for_statement', 'children': ['132', '133', '138']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '133', 'type': 'call', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '135', 'type': 'argument_list', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '137', 'type': 'integer', 'children': [], 'value': '3'},{'id': '138', 'type': 'block', 'children': ['139']},{'id': '139', 'type': 'if_statement', 'children': ['140', '143', '159']},{'id': '140', 'type': 'comparison_operator', 'children': ['141', '142'], 'value': '=='},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '143', 'type': 'block', 'children': ['144']},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '150']},{'id': '146', 'type': 'subscript', 'children': ['147', '148', '149']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'base_mtx'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '150', 'type': 'binary_operator', 'children': ['151', '152'], 'value': '-'},{'id': '151', 'type': 'integer', 'children': [], 'value': '1'},{'id': '152', 'type': 'binary_operator', 'children': ['153', '154'], 'value': '*'},{'id': '153', 'type': 'integer', 'children': [], 'value': '2'},{'id': '154', 'type': 'binary_operator', 'children': ['155', '158'], 'value': '**'},{'id': '155', 'type': 'subscript', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '158', 'type': 'integer', 'children': [], 'value': '2'},{'id': '159', 'type': 'else_clause', 'children': ['160']},{'id': '160', 'type': 'block', 'children': ['161']},{'id': '161', 'type': 'expression_statement', 'children': ['162']},{'id': '162', 'type': 'assignment', 'children': ['163', '167']},{'id': '163', 'type': 'subscript', 'children': ['164', '165', '166']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'base_mtx'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '167', 'type': 'assignment', 'children': ['168', '172']},{'id': '168', 'type': 'subscript', 'children': ['169', '170', '171']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'base_mtx'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '172', 'type': 'binary_operator', 'children': ['173', '179'], 'value': '*'},{'id': '173', 'type': 'binary_operator', 'children': ['174', '176'], 'value': '*'},{'id': '174', 'type': 'unary_operator', 'children': ['175'], 'value': '-'},{'id': '175', 'type': 'integer', 'children': [], 'value': '2'},{'id': '176', 'type': 'subscript', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '179', 'type': 'subscript', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'nv'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'refl_mtx'},{'id': '185', 'type': 'call', 'children': ['186', '189']},{'id': '186', 'type': 'attribute', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'block_diag'},{'id': '189', 'type': 'argument_list', 'children': ['190']},{'id': '190', 'type': 'list_splat', 'children': ['191']},{'id': '191', 'type': 'list_comprehension', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'base_mtx'},{'id': '193', 'type': 'for_in_clause', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '195', 'type': 'call', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '197', 'type': 'argument_list', 'children': ['198']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '199', 'type': 'return_statement', 'children': ['200']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'refl_mtx'} | def mtx_refl(nv, reps=1):
import numpy as np
from scipy import linalg as spla
from ..const import PRM
if spla.norm(nv) < PRM.ZERO_VEC_TOL:
raise ValueError("Norm of 'nv' is too small.")
nv = make_nd_vec(nv, nd=3, t=np.float64, norm=True)
if not np.isscalar(reps):
raise ValueError("'reps' must be scalar.")
if not np.issubdtype(type(reps), int):
raise ValueError("'reps' must be an integer.")
if not reps > 0:
raise ValueError("'reps' must be a positive integer.")
base_mtx = np.zeros(shape=(3,3), dtype=np.float64)
for i in range(3):
for j in range(i,3):
if i==j:
base_mtx[i,j] = 1 - 2*nv[i]**2
else:
base_mtx[i,j] = base_mtx[j,i] = -2*nv[i]*nv[j]
refl_mtx= spla.block_diag(*[base_mtx for i in range(reps)])
return refl_mtx |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'mtx_rot'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'theta'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '8', 'type': 'integer', 'children': [], 'value': '1'},{'id': '9', 'type': 'block', 'children': ['10', '15', '22', '29', '46', '64', '78', '96', '107', '121', '162', '186', '231', '248']},{'id': '10', 'type': 'import_statement', 'children': ['11']},{'id': '11', 'type': 'aliased_import', 'children': ['12', '14']},{'id': '12', 'type': 'dotted_name', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '15', 'type': 'import_from_statement', 'children': ['16', '18']},{'id': '16', 'type': 'dotted_name', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '18', 'type': 'aliased_import', 'children': ['19', '21']},{'id': '19', 'type': 'dotted_name', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'linalg'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '22', 'type': 'import_from_statement', 'children': ['23', '27']},{'id': '23', 'type': 'relative_import', 'children': ['24', '25']},{'id': '24', 'type': 'import_prefix', 'children': []},{'id': '25', 'type': 'dotted_name', 'children': ['26']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'const'},{'id': '27', 'type': 'dotted_name', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '29', 'type': 'if_statement', 'children': ['30', '40']},{'id': '30', 'type': 'comparison_operator', 'children': ['31', '37'], 'value': '<'},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'PRM'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'ZERO_VEC_TOL'},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'raise_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'string', 'children': [], 'value': '"Norm of \'ax\' is too small."'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '49', 'type': 'call', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'make_nd_vec'},{'id': '51', 'type': 'argument_list', 'children': ['52', '53', '56', '61']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'nd'},{'id': '55', 'type': 'integer', 'children': [], 'value': '3'},{'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'float64'},{'id': '61', 'type': 'keyword_argument', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'norm'},{'id': '63', 'type': 'True', 'children': []},{'id': '64', 'type': 'if_statement', 'children': ['65', '72']},{'id': '65', 'type': 'not_operator', 'children': ['66']},{'id': '66', 'type': 'call', 'children': ['67', '70']},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'isscalar'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '72', 'type': 'block', 'children': ['73']},{'id': '73', 'type': 'raise_statement', 'children': ['74']},{'id': '74', 'type': 'call', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '76', 'type': 'argument_list', 'children': ['77']},{'id': '77', 'type': 'string', 'children': [], 'value': '"\'reps\' must be scalar."'},{'id': '78', 'type': 'if_statement', 'children': ['79', '90']},{'id': '79', 'type': 'not_operator', 'children': ['80']},{'id': '80', 'type': 'call', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'issubdtype'},{'id': '84', 'type': 'argument_list', 'children': ['85', '89']},{'id': '85', 'type': 'call', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '90', 'type': 'block', 'children': ['91']},{'id': '91', 'type': 'raise_statement', 'children': ['92']},{'id': '92', 'type': 'call', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'string', 'children': [], 'value': '"\'reps\' must be an integer."'},{'id': '96', 'type': 'if_statement', 'children': ['97', '101']},{'id': '97', 'type': 'not_operator', 'children': ['98']},{'id': '98', 'type': 'comparison_operator', 'children': ['99', '100'], 'value': '>'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '100', 'type': 'integer', 'children': [], 'value': '0'},{'id': '101', 'type': 'block', 'children': ['102']},{'id': '102', 'type': 'raise_statement', 'children': ['103']},{'id': '103', 'type': 'call', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'string', 'children': [], 'value': '"\'reps\' must be a positive integer."'},{'id': '107', 'type': 'if_statement', 'children': ['108', '115']},{'id': '108', 'type': 'not_operator', 'children': ['109']},{'id': '109', 'type': 'call', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'isscalar'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'theta'},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'raise_statement', 'children': ['117']},{'id': '117', 'type': 'call', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'string', 'children': [], 'value': '"\'theta\' must be scalar."'},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'assignment', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'mod_lc'},{'id': '124', 'type': 'call', 'children': ['125', '128']},{'id': '125', 'type': 'attribute', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '128', 'type': 'argument_list', 'children': ['129', '157']},{'id': '129', 'type': 'list', 'children': ['130', '139', '148'], 'value': '[ [0, -ax[2], ax[1]],\n [ax[2], 0, -ax[0]],\n [-ax[1], ax[0], 0] ]'},{'id': '130', 'type': 'list', 'children': ['131', '132', '136'], 'value': '[0, -ax[2], ax[1]]'},{'id': '131', 'type': 'integer', 'children': [], 'value': '0'},{'id': '132', 'type': 'unary_operator', 'children': ['133'], 'value': '-'},{'id': '133', 'type': 'subscript', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '135', 'type': 'integer', 'children': [], 'value': '2'},{'id': '136', 'type': 'subscript', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '138', 'type': 'integer', 'children': [], 'value': '1'},{'id': '139', 'type': 'list', 'children': ['140', '143', '144'], 'value': '[ax[2], 0, -ax[0]]'},{'id': '140', 'type': 'subscript', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '142', 'type': 'integer', 'children': [], 'value': '2'},{'id': '143', 'type': 'integer', 'children': [], 'value': '0'},{'id': '144', 'type': 'unary_operator', 'children': ['145'], 'value': '-'},{'id': '145', 'type': 'subscript', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '147', 'type': 'integer', 'children': [], 'value': '0'},{'id': '148', 'type': 'list', 'children': ['149', '153', '156'], 'value': '[-ax[1], ax[0], 0]'},{'id': '149', 'type': 'unary_operator', 'children': ['150'], 'value': '-'},{'id': '150', 'type': 'subscript', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '152', 'type': 'integer', 'children': [], 'value': '1'},{'id': '153', 'type': 'subscript', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '155', 'type': 'integer', 'children': [], 'value': '0'},{'id': '156', 'type': 'integer', 'children': [], 'value': '0'},{'id': '157', 'type': 'keyword_argument', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'float64'},{'id': '162', 'type': 'expression_statement', 'children': ['163']},{'id': '163', 'type': 'assignment', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'ax_oprod'},{'id': '165', 'type': 'call', 'children': ['166', '169']},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'dot'},{'id': '169', 'type': 'argument_list', 'children': ['170', '178']},{'id': '170', 'type': 'call', 'children': ['171', '174']},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'reshape'},{'id': '174', 'type': 'argument_list', 'children': ['175']},{'id': '175', 'type': 'tuple', 'children': ['176', '177']},{'id': '176', 'type': 'integer', 'children': [], 'value': '3'},{'id': '177', 'type': 'integer', 'children': [], 'value': '1'},{'id': '178', 'type': 'call', 'children': ['179', '182']},{'id': '179', 'type': 'attribute', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'reshape'},{'id': '182', 'type': 'argument_list', 'children': ['183']},{'id': '183', 'type': 'tuple', 'children': ['184', '185']},{'id': '184', 'type': 'integer', 'children': [], 'value': '1'},{'id': '185', 'type': 'integer', 'children': [], 'value': '3'},{'id': '186', 'type': 'expression_statement', 'children': ['187']},{'id': '187', 'type': 'assignment', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'base_mtx'},{'id': '189', 'type': 'call', 'children': ['190', '193']},{'id': '190', 'type': 'attribute', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '193', 'type': 'argument_list', 'children': ['194', '223']},{'id': '194', 'type': 'call', 'children': ['195', '198']},{'id': '195', 'type': 'attribute', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '198', 'type': 'argument_list', 'children': ['199', '210']},{'id': '199', 'type': 'binary_operator', 'children': ['200', '209'], 'value': '*'},{'id': '200', 'type': '()', 'children': ['201']},{'id': '201', 'type': 'binary_operator', 'children': ['202', '203'], 'value': '-'},{'id': '202', 'type': 'float', 'children': [], 'value': '1.0'},{'id': '203', 'type': 'call', 'children': ['204', '207']},{'id': '204', 'type': 'attribute', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'cos'},{'id': '207', 'type': 'argument_list', 'children': ['208']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'theta'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'ax_oprod'},{'id': '210', 'type': 'binary_operator', 'children': ['211', '217'], 'value': '*'},{'id': '211', 'type': 'call', 'children': ['212', '215']},{'id': '212', 'type': 'attribute', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'cos'},{'id': '215', 'type': 'argument_list', 'children': ['216']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'theta'},{'id': '217', 'type': 'call', 'children': ['218', '221']},{'id': '218', 'type': 'attribute', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'eye'},{'id': '221', 'type': 'argument_list', 'children': ['222']},{'id': '222', 'type': 'integer', 'children': [], 'value': '3'},{'id': '223', 'type': 'binary_operator', 'children': ['224', '230'], 'value': '*'},{'id': '224', 'type': 'call', 'children': ['225', '228']},{'id': '225', 'type': 'attribute', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'sin'},{'id': '228', 'type': 'argument_list', 'children': ['229']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'theta'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'mod_lc'},{'id': '231', 'type': 'expression_statement', 'children': ['232']},{'id': '232', 'type': 'assignment', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'rot_mtx'},{'id': '234', 'type': 'call', 'children': ['235', '238']},{'id': '235', 'type': 'attribute', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'spla'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'block_diag'},{'id': '238', 'type': 'argument_list', 'children': ['239']},{'id': '239', 'type': 'list_splat', 'children': ['240']},{'id': '240', 'type': 'list_comprehension', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'base_mtx'},{'id': '242', 'type': 'for_in_clause', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '244', 'type': 'call', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '246', 'type': 'argument_list', 'children': ['247']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'reps'},{'id': '248', 'type': 'return_statement', 'children': ['249']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'rot_mtx'} | def mtx_rot(ax, theta, reps=1):
import numpy as np
from scipy import linalg as spla
from ..const import PRM
if spla.norm(ax) < PRM.ZERO_VEC_TOL:
raise ValueError("Norm of 'ax' is too small.")
ax = make_nd_vec(ax, nd=3, t=np.float64, norm=True)
if not np.isscalar(reps):
raise ValueError("'reps' must be scalar.")
if not np.issubdtype(type(reps), int):
raise ValueError("'reps' must be an integer.")
if not reps > 0:
raise ValueError("'reps' must be a positive integer.")
if not np.isscalar(theta):
raise ValueError("'theta' must be scalar.")
mod_lc = np.array([ [0, -ax[2], ax[1]],
[ax[2], 0, -ax[0]],
[-ax[1], ax[0], 0] ], dtype=np.float64)
ax_oprod = np.dot(ax.reshape((3,1)), ax.reshape((1,3)))
base_mtx = np.add(
np.add( (1.0 - np.cos(theta)) * ax_oprod,
np.cos(theta) * np.eye(3)
),
np.sin(theta) * mod_lc
)
rot_mtx= spla.block_diag(*[base_mtx for i in range(reps)])
return rot_mtx |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'ffd'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'targets'},{'id': '6', 'type': 'dictionary_splat_pattern', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '8', 'type': 'block', 'children': ['9', '22', '40', '53']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sizes'},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '14', 'type': 'argument_list', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'weight'},{'id': '18', 'type': 'argument_list', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '20', 'type': 'dictionary_splat', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'sizes'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '27', 'type': 'argument_list', 'children': ['28', '29', '37']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'sizes'},{'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'operator'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'itemgetter'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'integer', 'children': [], 'value': '1'},{'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '39', 'type': 'True', 'children': []},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '45', 'type': 'argument_list', 'children': ['46', '52']},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'operator'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'itemgetter'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'integer', 'children': [], 'value': '0'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'sizes'},{'id': '53', 'type': 'return_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'ff'},{'id': '56', 'type': 'argument_list', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'targets'} | def ffd(items, targets, **kwargs):
sizes = zip(items, weight(items, **kwargs))
sizes = sorted(sizes, key=operator.itemgetter(1), reverse=True)
items = map(operator.itemgetter(0), sizes)
return ff(items, targets) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'match_variant_sequence_to_reference_context'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'reference_context'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'min_transcript_prefix_length'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'max_transcript_mismatches'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'include_mismatches_after_variant'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'max_trimming_attempts'},{'id': '13', 'type': 'integer', 'children': [], 'value': '2'},{'id': '14', 'type': 'block', 'children': ['15', '19', '197']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_in_reading_frame'},{'id': '18', 'type': 'None', 'children': []},{'id': '19', 'type': 'for_statement', 'children': ['20', '21', '27']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'binary_operator', 'children': ['25', '26'], 'value': '+'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'max_trimming_attempts'},{'id': '26', 'type': 'integer', 'children': [], 'value': '1'},{'id': '27', 'type': 'block', 'children': ['28', '63', '80', '95', '102', '109', '116', '131', '135', '142', '149', '168', '176', '186']},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_too_short'},{'id': '31', 'type': '()', 'children': ['32']},{'id': '32', 'type': 'boolean_operator', 'children': ['33', '48'], 'value': 'or'},{'id': '33', 'type': '()', 'children': ['34']},{'id': '34', 'type': 'boolean_operator', 'children': ['35', '40'], 'value': 'and'},{'id': '35', 'type': 'comparison_operator', 'children': ['36', '39'], 'value': '=='},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'reference_context'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '39', 'type': 'string', 'children': [], 'value': '"+"'},{'id': '40', 'type': 'comparison_operator', 'children': ['41', '47'], 'value': '<'},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'min_transcript_prefix_length'},{'id': '48', 'type': '()', 'children': ['49']},{'id': '49', 'type': 'boolean_operator', 'children': ['50', '55'], 'value': 'and'},{'id': '50', 'type': 'comparison_operator', 'children': ['51', '54'], 'value': '=='},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'reference_context'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '54', 'type': 'string', 'children': [], 'value': '"-"'},{'id': '55', 'type': 'comparison_operator', 'children': ['56', '62'], 'value': '<'},{'id': '56', 'type': 'call', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'suffix'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'min_transcript_prefix_length'},{'id': '63', 'type': 'if_statement', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_too_short'},{'id': '65', 'type': 'block', 'children': ['66', '78']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '71', 'type': 'argument_list', 'children': ['72', '73', '74', '75']},{'id': '72', 'type': 'string', 'children': [], 'value': '"Variant sequence %s shorter than min allowed %d (iter=%d)"'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'min_transcript_prefix_length'},{'id': '75', 'type': 'binary_operator', 'children': ['76', '77'], 'value': '+'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '77', 'type': 'integer', 'children': [], 'value': '1'},{'id': '78', 'type': 'return_statement', 'children': ['79']},{'id': '79', 'type': 'None', 'children': []},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '83', '84']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_in_reading_frame'},{'id': '83', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '84', 'type': 'call', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'VariantSequenceInReadingFrame'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'from_variant_sequence_and_reference_context'},{'id': '88', 'type': 'argument_list', 'children': ['89', '92']},{'id': '89', 'type': 'keyword_argument', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '92', 'type': 'keyword_argument', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'reference_context'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'reference_context'},{'id': '95', 'type': 'if_statement', 'children': ['96', '99']},{'id': '96', 'type': 'comparison_operator', 'children': ['97', '98'], 'value': 'is'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_in_reading_frame'},{'id': '98', 'type': 'None', 'children': []},{'id': '99', 'type': 'block', 'children': ['100']},{'id': '100', 'type': 'return_statement', 'children': ['101']},{'id': '101', 'type': 'None', 'children': []},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'assignment', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'n_mismatch_before_variant'},{'id': '105', 'type': '()', 'children': ['106']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_in_reading_frame'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'number_mismatches_before_variant'},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'assignment', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'n_mismatch_after_variant'},{'id': '112', 'type': '()', 'children': ['113']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_in_reading_frame'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'number_mismatches_after_variant'},{'id': '116', 'type': 'ERROR', 'children': ['117']},{'id': '117', 'type': 'call', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '121', 'type': 'argument_list', 'children': ['122', '124', '127', '130']},{'id': '122', 'type': 'ERROR', 'children': ['123']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'Iter'},{'id': '124', 'type': 'binary_operator', 'children': ['125', '126'], 'value': '+'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '126', 'type': 'integer', 'children': [], 'value': '1'},{'id': '127', 'type': 'binary_operator', 'children': ['128', '129'], 'value': '+'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'max_trimming_attempts'},{'id': '129', 'type': 'integer', 'children': [], 'value': '1'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_in_reading_frame'},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'assignment', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'total_mismatches'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'n_mismatch_before_variant'},{'id': '135', 'type': 'if_statement', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'include_mismatches_after_variant'},{'id': '137', 'type': 'block', 'children': ['138']},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'augmented_assignment', 'children': ['140', '141'], 'value': '+='},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'total_mismatches'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'n_mismatch_after_variant'},{'id': '142', 'type': 'if_statement', 'children': ['143', '146']},{'id': '143', 'type': 'comparison_operator', 'children': ['144', '145'], 'value': '<='},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'total_mismatches'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'max_transcript_mismatches'},{'id': '146', 'type': 'block', 'children': ['147']},{'id': '147', 'type': 'return_statement', 'children': ['148']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_in_reading_frame'},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'call', 'children': ['151', '154']},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '154', 'type': 'argument_list', 'children': ['155', '159', '160', '161', '162', '165']},{'id': '155', 'type': '()', 'children': ['156']},{'id': '156', 'type': 'concatenated_string', 'children': ['157', '158']},{'id': '157', 'type': 'string', 'children': [], 'value': '"Too many mismatches (%d) between variant sequence %s and "'},{'id': '158', 'type': 'string', 'children': [], 'value': '"reference context %s (attempt=%d/%d)"'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'n_mismatch_before_variant'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'reference_context'},{'id': '162', 'type': 'binary_operator', 'children': ['163', '164'], 'value': '+'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '164', 'type': 'integer', 'children': [], 'value': '1'},{'id': '165', 'type': 'binary_operator', 'children': ['166', '167'], 'value': '+'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'max_trimming_attempts'},{'id': '167', 'type': 'integer', 'children': [], 'value': '1'},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'assignment', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'current_min_coverage'},{'id': '171', 'type': 'call', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'min_coverage'},{'id': '175', 'type': 'argument_list', 'children': []},{'id': '176', 'type': 'expression_statement', 'children': ['177']},{'id': '177', 'type': 'call', 'children': ['178', '181']},{'id': '178', 'type': 'attribute', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '181', 'type': 'argument_list', 'children': ['182', '183']},{'id': '182', 'type': 'string', 'children': [], 'value': '"Trimming to subsequence covered by at least %d reads"'},{'id': '183', 'type': 'binary_operator', 'children': ['184', '185'], 'value': '+'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'current_min_coverage'},{'id': '185', 'type': 'integer', 'children': [], 'value': '1'},{'id': '186', 'type': 'expression_statement', 'children': ['187']},{'id': '187', 'type': 'assignment', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '189', 'type': 'call', 'children': ['190', '193']},{'id': '190', 'type': 'attribute', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'variant_sequence'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'trim_by_coverage'},{'id': '193', 'type': 'argument_list', 'children': ['194']},{'id': '194', 'type': 'binary_operator', 'children': ['195', '196'], 'value': '+'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'current_min_coverage'},{'id': '196', 'type': 'integer', 'children': [], 'value': '1'},{'id': '197', 'type': 'return_statement', 'children': ['198']},{'id': '198', 'type': 'None', 'children': []} | def match_variant_sequence_to_reference_context(
variant_sequence,
reference_context,
min_transcript_prefix_length,
max_transcript_mismatches,
include_mismatches_after_variant=False,
max_trimming_attempts=2):
variant_sequence_in_reading_frame = None
for i in range(max_trimming_attempts + 1):
variant_sequence_too_short = (
(reference_context.strand == "+" and
len(variant_sequence.prefix) < min_transcript_prefix_length) or
(reference_context.strand == "-" and
len(variant_sequence.suffix) < min_transcript_prefix_length)
)
if variant_sequence_too_short:
logger.info(
"Variant sequence %s shorter than min allowed %d (iter=%d)",
variant_sequence,
min_transcript_prefix_length,
i + 1)
return None
variant_sequence_in_reading_frame = \
VariantSequenceInReadingFrame.from_variant_sequence_and_reference_context(
variant_sequence=variant_sequence,
reference_context=reference_context)
if variant_sequence_in_reading_frame is None:
return None
n_mismatch_before_variant = (
variant_sequence_in_reading_frame.number_mismatches_before_variant)
n_mismatch_after_variant = (
variant_sequence_in_reading_frame.number_mismatches_after_variant)
logger.info("Iter
i + 1,
max_trimming_attempts + 1,
variant_sequence_in_reading_frame))
total_mismatches = n_mismatch_before_variant
if include_mismatches_after_variant:
total_mismatches += n_mismatch_after_variant
if total_mismatches <= max_transcript_mismatches:
return variant_sequence_in_reading_frame
logger.info(
("Too many mismatches (%d) between variant sequence %s and "
"reference context %s (attempt=%d/%d)"),
n_mismatch_before_variant,
variant_sequence,
reference_context,
i + 1,
max_trimming_attempts + 1)
current_min_coverage = variant_sequence.min_coverage()
logger.info(
"Trimming to subsequence covered by at least %d reads",
current_min_coverage + 1)
variant_sequence = variant_sequence.trim_by_coverage(
current_min_coverage + 1)
return None |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'predicted_effects_for_variant'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'only_coding_changes'},{'id': '10', 'type': 'True', 'children': []},{'id': '11', 'type': 'block', 'children': ['12', '16', '79', '86', '93', '104']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'effects'},{'id': '15', 'type': 'list', 'children': [], 'value': '[]'},{'id': '16', 'type': 'for_statement', 'children': ['17', '18', '21']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'transcripts'},{'id': '21', 'type': 'block', 'children': ['22', '42', '67']},{'id': '22', 'type': 'if_statement', 'children': ['23', '29']},{'id': '23', 'type': 'boolean_operator', 'children': ['24', '25'], 'value': 'and'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'only_coding_changes'},{'id': '25', 'type': 'not_operator', 'children': ['26']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'complete'},{'id': '29', 'type': 'block', 'children': ['30', '41']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '35', 'type': 'argument_list', 'children': ['36', '37', '40']},{'id': '36', 'type': 'string', 'children': [], 'value': '"Skipping transcript %s for variant %s because it\'s incomplete"'},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '41', 'type': 'continue_statement', 'children': []},{'id': '42', 'type': 'if_statement', 'children': ['43', '50']},{'id': '43', 'type': 'boolean_operator', 'children': ['44', '45'], 'value': 'and'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '45', 'type': 'comparison_operator', 'children': ['46', '49'], 'value': 'not'},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '50', 'type': 'block', 'children': ['51', '66']},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '56', 'type': 'argument_list', 'children': ['57', '58', '61', '62']},{'id': '57', 'type': 'string', 'children': [], 'value': '"Skipping transcript %s for variant %s because it\'s not one of %d allowed"'},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '62', 'type': 'call', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '66', 'type': 'continue_statement', 'children': []},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'effects'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '77']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'effect_on_transcript'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'effects'},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'EffectCollection'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'effects'},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'n_total_effects'},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'effects'},{'id': '93', 'type': 'expression_statement', 'children': ['94']},{'id': '94', 'type': 'call', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'binary_operator', 'children': ['100', '101'], 'value': '%'},{'id': '100', 'type': 'string', 'children': [], 'value': '"Predicted total %d effects for variant %s"'},{'id': '101', 'type': 'tuple', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'n_total_effects'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '104', 'type': 'if_statement', 'children': ['105', '107', '110']},{'id': '105', 'type': 'not_operator', 'children': ['106']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'only_coding_changes'},{'id': '107', 'type': 'block', 'children': ['108']},{'id': '108', 'type': 'return_statement', 'children': ['109']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'effects'},{'id': '110', 'type': 'else_clause', 'children': ['111']},{'id': '111', 'type': 'block', 'children': ['112', '120', '134', '148', '161']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'nonsynonymous_coding_effects'},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'effects'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'drop_silent_and_noncoding'},{'id': '119', 'type': 'argument_list', 'children': []},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'call', 'children': ['122', '125']},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '125', 'type': 'argument_list', 'children': ['126', '127', '131', '132', '133']},{'id': '126', 'type': 'string', 'children': [], 'value': '"Keeping %d/%d effects which affect protein coding sequence for %s: %s"'},{'id': '127', 'type': 'call', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '129', 'type': 'argument_list', 'children': ['130']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'nonsynonymous_coding_effects'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'n_total_effects'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'nonsynonymous_coding_effects'},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'usable_effects'},{'id': '137', 'type': 'list_comprehension', 'children': ['138', '139', '142']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'effect'},{'id': '139', 'type': 'for_in_clause', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'effect'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'nonsynonymous_coding_effects'},{'id': '142', 'type': 'if_clause', 'children': ['143']},{'id': '143', 'type': 'comparison_operator', 'children': ['144', '147'], 'value': 'is'},{'id': '144', 'type': 'attribute', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'effect'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'mutant_protein_sequence'},{'id': '147', 'type': 'None', 'children': []},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'call', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '153', 'type': 'argument_list', 'children': ['154', '155', '159', '160']},{'id': '154', 'type': 'string', 'children': [], 'value': '"Keeping %d effects with predictable AA sequences for %s: %s"'},{'id': '155', 'type': 'call', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '157', 'type': 'argument_list', 'children': ['158']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'usable_effects'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'usable_effects'},{'id': '161', 'type': 'return_statement', 'children': ['162']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'usable_effects'} | def predicted_effects_for_variant(
variant,
transcript_id_whitelist=None,
only_coding_changes=True):
effects = []
for transcript in variant.transcripts:
if only_coding_changes and not transcript.complete:
logger.info(
"Skipping transcript %s for variant %s because it's incomplete",
transcript.name,
variant)
continue
if transcript_id_whitelist and transcript.id not in transcript_id_whitelist:
logger.info(
"Skipping transcript %s for variant %s because it's not one of %d allowed",
transcript.name,
variant,
len(transcript_id_whitelist))
continue
effects.append(variant.effect_on_transcript(transcript))
effects = EffectCollection(effects)
n_total_effects = len(effects)
logger.info("Predicted total %d effects for variant %s" % (
n_total_effects,
variant))
if not only_coding_changes:
return effects
else:
nonsynonymous_coding_effects = effects.drop_silent_and_noncoding()
logger.info(
"Keeping %d/%d effects which affect protein coding sequence for %s: %s",
len(nonsynonymous_coding_effects),
n_total_effects,
variant,
nonsynonymous_coding_effects)
usable_effects = [
effect
for effect in nonsynonymous_coding_effects
if effect.mutant_protein_sequence is not None
]
logger.info(
"Keeping %d effects with predictable AA sequences for %s: %s",
len(usable_effects),
variant,
usable_effects)
return usable_effects |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_protein_sequences'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'protein_sequences'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '9', 'type': 'argument_list', 'children': ['10']},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '12', 'type': 'argument_list', 'children': ['13', '14', '19']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'protein_sequences'},{'id': '14', 'type': 'keyword_argument', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'ProteinSequence'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'ascending_sort_key'},{'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '21', 'type': 'True', 'children': []} | def sort_protein_sequences(protein_sequences):
return list(
sorted(
protein_sequences,
key=ProteinSequence.ascending_sort_key,
reverse=True)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '32']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'reads_generator_to_protein_sequences_generator'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26', '29']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'variant_and_overlapping_reads_generator'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'protein_sequence_length'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'PROTEIN_SEQUENCE_LENGTH'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'min_alt_rna_reads'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'MIN_ALT_RNA_READS'},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'min_variant_sequence_coverage'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'MIN_VARIANT_SEQUENCE_COVERAGE'},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'min_transcript_prefix_length'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'MIN_TRANSCRIPT_PREFIX_LENGTH'},{'id': '20', 'type': 'default_parameter', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'max_transcript_mismatches'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'MAX_REFERENCE_TRANSCRIPT_MISMATCHES'},{'id': '23', 'type': 'default_parameter', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'include_mismatches_after_variant'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'INCLUDE_MISMATCHES_AFTER_VARIANT'},{'id': '26', 'type': 'default_parameter', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'max_protein_sequences_per_variant'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'MAX_PROTEIN_SEQUENCES_PER_VARIANT'},{'id': '29', 'type': 'default_parameter', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_assembly'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'VARIANT_SEQUENCE_ASSEMBLY'},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'for_statement', 'children': ['34', '37', '38']},{'id': '34', 'type': 'tuple_pattern', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'overlapping_reads'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'variant_and_overlapping_reads_generator'},{'id': '38', 'type': 'block', 'children': ['39', '55', '65', '72', '79', '89', '99', '135', '139', '241', '248']},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'overlapping_transcript_ids'},{'id': '42', 'type': 'list_comprehension', 'children': ['43', '46', '51']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '46', 'type': 'for_in_clause', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'transcripts'},{'id': '51', 'type': 'if_clause', 'children': ['52']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'is_protein_coding'},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '61']},{'id': '57', 'type': 'pattern_list', 'children': ['58', '59', '60']},{'id': '58', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'alt'},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'trim_variant'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'overlapping_reads'},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'overlapping_reads'},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'reads_grouped_by_allele'},{'id': '75', 'type': 'call', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'group_reads_by_allele'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'overlapping_reads'},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'ref_reads'},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'reads_grouped_by_allele'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '86', 'type': 'argument_list', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '88', 'type': 'list', 'children': [], 'value': '[]'},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'assignment', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'alt_reads'},{'id': '92', 'type': 'call', 'children': ['93', '96']},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'reads_grouped_by_allele'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '96', 'type': 'argument_list', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'alt'},{'id': '98', 'type': 'list', 'children': [], 'value': '[]'},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'translations'},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'translate_variant_reads'},{'id': '104', 'type': 'argument_list', 'children': ['105', '108', '111', '114', '117', '120', '123', '126', '129', '132']},{'id': '105', 'type': 'keyword_argument', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '108', 'type': 'keyword_argument', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'variant_reads'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'alt_reads'},{'id': '111', 'type': 'keyword_argument', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'transcript_id_whitelist'},{'id': '114', 'type': 'keyword_argument', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'protein_sequence_length'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'protein_sequence_length'},{'id': '117', 'type': 'keyword_argument', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'min_alt_rna_reads'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'min_alt_rna_reads'},{'id': '120', 'type': 'keyword_argument', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'min_variant_sequence_coverage'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'min_variant_sequence_coverage'},{'id': '123', 'type': 'keyword_argument', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'min_transcript_prefix_length'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'min_transcript_prefix_length'},{'id': '126', 'type': 'keyword_argument', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'max_transcript_mismatches'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'max_transcript_mismatches'},{'id': '129', 'type': 'keyword_argument', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'include_mismatches_after_variant'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'include_mismatches_after_variant'},{'id': '132', 'type': 'keyword_argument', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_assembly'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'variant_sequence_assembly'},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'assignment', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'protein_sequences'},{'id': '138', 'type': 'list', 'children': [], 'value': '[]'},{'id': '139', 'type': 'for_statement', 'children': ['140', '143', '156']},{'id': '140', 'type': 'tuple_pattern', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'equivalent_translations'},{'id': '143', 'type': 'call', 'children': ['144', '155']},{'id': '144', 'type': 'attribute', 'children': ['145', '154']},{'id': '145', 'type': 'call', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'groupby'},{'id': '147', 'type': 'argument_list', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'translations'},{'id': '149', 'type': 'keyword_argument', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'key_fn'},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'Translation'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'as_translation_key'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '155', 'type': 'argument_list', 'children': []},{'id': '156', 'type': 'block', 'children': ['157', '170', '183', '221', '234']},{'id': '157', 'type': 'expression_statement', 'children': ['158']},{'id': '158', 'type': 'assignment', 'children': ['159', '163', '164']},{'id': '159', 'type': 'pattern_list', 'children': ['160', '161', '162']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'alt_reads_supporting_protein_sequence'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'group_transcript_ids'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'group_gene_names'},{'id': '163', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '164', 'type': 'call', 'children': ['165', '168']},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'ProteinSequence'},{'id': '167', 'type': 'identifier', 'children': [], 'value': '_summarize_translations'},{'id': '168', 'type': 'argument_list', 'children': ['169']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'equivalent_translations'},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '175', 'type': 'argument_list', 'children': ['176', '177', '178', '182']},{'id': '176', 'type': 'string', 'children': [], 'value': '"%s: %s alt reads supporting protein sequence (gene names = %s)"'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '178', 'type': 'call', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '180', 'type': 'argument_list', 'children': ['181']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'alt_reads_supporting_protein_sequence'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'group_gene_names'},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'assignment', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'protein_sequence'},{'id': '186', 'type': 'call', 'children': ['187', '190']},{'id': '187', 'type': 'attribute', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'ProteinSequence'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'from_translation_key'},{'id': '190', 'type': 'argument_list', 'children': ['191', '194', '197', '200', '203', '206', '209', '212', '215']},{'id': '191', 'type': 'keyword_argument', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'translation_key'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '194', 'type': 'keyword_argument', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'translations'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'equivalent_translations'},{'id': '197', 'type': 'keyword_argument', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'overlapping_reads'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'overlapping_reads'},{'id': '200', 'type': 'keyword_argument', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'alt_reads'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'alt_reads'},{'id': '203', 'type': 'keyword_argument', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'ref_reads'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'ref_reads'},{'id': '206', 'type': 'keyword_argument', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'alt_reads_supporting_protein_sequence'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'alt_reads_supporting_protein_sequence'},{'id': '209', 'type': 'keyword_argument', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'transcripts_supporting_protein_sequence'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'group_transcript_ids'},{'id': '212', 'type': 'keyword_argument', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'transcripts_overlapping_variant'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'overlapping_transcript_ids'},{'id': '215', 'type': 'keyword_argument', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'gene'},{'id': '217', 'type': 'call', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '219', 'type': 'argument_list', 'children': ['220']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'group_gene_names'},{'id': '221', 'type': 'expression_statement', 'children': ['222']},{'id': '222', 'type': 'call', 'children': ['223', '226']},{'id': '223', 'type': 'attribute', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '226', 'type': 'argument_list', 'children': ['227']},{'id': '227', 'type': 'binary_operator', 'children': ['228', '229'], 'value': '%'},{'id': '228', 'type': 'string', 'children': [], 'value': '"%s: protein sequence = %s"'},{'id': '229', 'type': 'tuple', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '231', 'type': 'attribute', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'protein_sequence'},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'amino_acids'},{'id': '234', 'type': 'expression_statement', 'children': ['235']},{'id': '235', 'type': 'call', 'children': ['236', '239']},{'id': '236', 'type': 'attribute', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'protein_sequences'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '239', 'type': 'argument_list', 'children': ['240']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'protein_sequence'},{'id': '241', 'type': 'expression_statement', 'children': ['242']},{'id': '242', 'type': 'assignment', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'protein_sequences'},{'id': '244', 'type': 'call', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'sort_protein_sequences'},{'id': '246', 'type': 'argument_list', 'children': ['247']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'protein_sequences'},{'id': '248', 'type': 'expression_statement', 'children': ['249']},{'id': '249', 'type': 'yield', 'children': ['250']},{'id': '250', 'type': 'expression_list', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '252', 'type': 'subscript', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'protein_sequences'},{'id': '254', 'type': 'slice', 'children': ['255', '256']},{'id': '255', 'type': 'colon', 'children': []},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'max_protein_sequences_per_variant'} | def reads_generator_to_protein_sequences_generator(
variant_and_overlapping_reads_generator,
transcript_id_whitelist=None,
protein_sequence_length=PROTEIN_SEQUENCE_LENGTH,
min_alt_rna_reads=MIN_ALT_RNA_READS,
min_variant_sequence_coverage=MIN_VARIANT_SEQUENCE_COVERAGE,
min_transcript_prefix_length=MIN_TRANSCRIPT_PREFIX_LENGTH,
max_transcript_mismatches=MAX_REFERENCE_TRANSCRIPT_MISMATCHES,
include_mismatches_after_variant=INCLUDE_MISMATCHES_AFTER_VARIANT,
max_protein_sequences_per_variant=MAX_PROTEIN_SEQUENCES_PER_VARIANT,
variant_sequence_assembly=VARIANT_SEQUENCE_ASSEMBLY):
for (variant, overlapping_reads) in variant_and_overlapping_reads_generator:
overlapping_transcript_ids = [
t.id
for t in variant.transcripts
if t.is_protein_coding
]
_, ref, alt = trim_variant(variant)
overlapping_reads = list(overlapping_reads)
reads_grouped_by_allele = group_reads_by_allele(overlapping_reads)
ref_reads = reads_grouped_by_allele.get(ref, [])
alt_reads = reads_grouped_by_allele.get(alt, [])
translations = translate_variant_reads(
variant=variant,
variant_reads=alt_reads,
transcript_id_whitelist=transcript_id_whitelist,
protein_sequence_length=protein_sequence_length,
min_alt_rna_reads=min_alt_rna_reads,
min_variant_sequence_coverage=min_variant_sequence_coverage,
min_transcript_prefix_length=min_transcript_prefix_length,
max_transcript_mismatches=max_transcript_mismatches,
include_mismatches_after_variant=include_mismatches_after_variant,
variant_sequence_assembly=variant_sequence_assembly)
protein_sequences = []
for (key, equivalent_translations) in groupby(
translations, key_fn=Translation.as_translation_key).items():
alt_reads_supporting_protein_sequence, group_transcript_ids, group_gene_names = \
ProteinSequence._summarize_translations(equivalent_translations)
logger.info(
"%s: %s alt reads supporting protein sequence (gene names = %s)",
key,
len(alt_reads_supporting_protein_sequence),
group_gene_names)
protein_sequence = ProteinSequence.from_translation_key(
translation_key=key,
translations=equivalent_translations,
overlapping_reads=overlapping_reads,
alt_reads=alt_reads,
ref_reads=ref_reads,
alt_reads_supporting_protein_sequence=alt_reads_supporting_protein_sequence,
transcripts_supporting_protein_sequence=group_transcript_ids,
transcripts_overlapping_variant=overlapping_transcript_ids,
gene=list(group_gene_names))
logger.info("%s: protein sequence = %s" % (key, protein_sequence.amino_acids))
protein_sequences.append(protein_sequence)
protein_sequences = sort_protein_sequences(protein_sequences)
yield variant, protein_sequences[:max_protein_sequences_per_variant] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'from_variant_and_transcript'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'context_size'},{'id': '8', 'type': 'block', 'children': ['9', '28', '47', '66', '83', '101']},{'id': '9', 'type': 'if_statement', 'children': ['10', '14']},{'id': '10', 'type': 'not_operator', 'children': ['11']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'contains_start_codon'},{'id': '14', 'type': 'block', 'children': ['15', '26']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '20', 'type': 'argument_list', 'children': ['21', '22', '25']},{'id': '21', 'type': 'string', 'children': [], 'value': '"Expected transcript %s for variant %s to have start codon"'},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '26', 'type': 'return_statement', 'children': ['27']},{'id': '27', 'type': 'None', 'children': []},{'id': '28', 'type': 'if_statement', 'children': ['29', '33']},{'id': '29', 'type': 'not_operator', 'children': ['30']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'contains_stop_codon'},{'id': '33', 'type': 'block', 'children': ['34', '45']},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '39', 'type': 'argument_list', 'children': ['40', '41', '44']},{'id': '40', 'type': 'string', 'children': [], 'value': '"Expected transcript %s for variant %s to have stop codon"'},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '45', 'type': 'return_statement', 'children': ['46']},{'id': '46', 'type': 'None', 'children': []},{'id': '47', 'type': 'if_statement', 'children': ['48', '52']},{'id': '48', 'type': 'not_operator', 'children': ['49']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'protein_sequence'},{'id': '52', 'type': 'block', 'children': ['53', '64']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '58', 'type': 'argument_list', 'children': ['59', '60', '63']},{'id': '59', 'type': 'string', 'children': [], 'value': '"Expected transript %s for variant %s to have protein sequence"'},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '64', 'type': 'return_statement', 'children': ['65']},{'id': '65', 'type': 'None', 'children': []},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'sequence_key'},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'ReferenceSequenceKey'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'from_variant_and_transcript'},{'id': '73', 'type': 'argument_list', 'children': ['74', '77', '80']},{'id': '74', 'type': 'keyword_argument', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '77', 'type': 'keyword_argument', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '80', 'type': 'keyword_argument', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'context_size'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'context_size'},{'id': '83', 'type': 'if_statement', 'children': ['84', '87']},{'id': '84', 'type': 'comparison_operator', 'children': ['85', '86'], 'value': 'is'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'sequence_key'},{'id': '86', 'type': 'None', 'children': []},{'id': '87', 'type': 'block', 'children': ['88', '99']},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '93', 'type': 'argument_list', 'children': ['94', '95', '96']},{'id': '94', 'type': 'string', 'children': [], 'value': '"No sequence key for variant %s on transcript %s"'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '99', 'type': 'return_statement', 'children': ['100']},{'id': '100', 'type': 'None', 'children': []},{'id': '101', 'type': 'return_statement', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'from_variant_and_transcript_and_sequence_key'},{'id': '106', 'type': 'argument_list', 'children': ['107', '110', '113']},{'id': '107', 'type': 'keyword_argument', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '110', 'type': 'keyword_argument', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'transcript'},{'id': '113', 'type': 'keyword_argument', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'sequence_key'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'sequence_key'} | def from_variant_and_transcript(
cls,
variant,
transcript,
context_size):
if not transcript.contains_start_codon:
logger.info(
"Expected transcript %s for variant %s to have start codon",
transcript.name,
variant)
return None
if not transcript.contains_stop_codon:
logger.info(
"Expected transcript %s for variant %s to have stop codon",
transcript.name,
variant)
return None
if not transcript.protein_sequence:
logger.info(
"Expected transript %s for variant %s to have protein sequence",
transcript.name,
variant)
return None
sequence_key = ReferenceSequenceKey.from_variant_and_transcript(
variant=variant,
transcript=transcript,
context_size=context_size)
if sequence_key is None:
logger.info(
"No sequence key for variant %s on transcript %s",
variant,
transcript.name)
return None
return cls.from_variant_and_transcript_and_sequence_key(
variant=variant,
transcript=transcript,
sequence_key=sequence_key) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'info'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'long_description'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'classifiers'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'license'},{'id': '8', 'type': 'block', 'children': ['9', '17']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'client'},{'id': '12', 'type': 'call', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'requests'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'Session'},{'id': '16', 'type': 'argument_list', 'children': []},{'id': '17', 'type': 'for_statement', 'children': ['18', '19', '20']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'name_or_url'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '20', 'type': 'block', 'children': ['21', '29', '54', '90', '95', '107', '111', '125', '139', '143', '148', '152', '164', '180', '196', '208', '217', '233', '249', '253', '267', '286', '305', '334', '385']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'get_package'},{'id': '26', 'type': 'argument_list', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'name_or_url'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'client'},{'id': '29', 'type': 'if_statement', 'children': ['30', '32']},{'id': '30', 'type': 'not_operator', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '32', 'type': 'block', 'children': ['33', '53']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'secho'},{'id': '36', 'type': 'argument_list', 'children': ['37', '45', '48']},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'string', 'children': [], 'value': 'u\'Invalid name or URL: "{name}"\''},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'keyword_argument', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'name_or_url'},{'id': '45', 'type': 'keyword_argument', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'fg'},{'id': '47', 'type': 'string', 'children': [], 'value': "'red'"},{'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '53', 'type': 'continue_statement', 'children': []},{'id': '54', 'type': 'try_statement', 'children': ['55', '64']},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '59', 'type': 'subscript', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '63', 'type': 'string', 'children': [], 'value': "'info'"},{'id': '64', 'type': 'except_clause', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'NotFoundError'},{'id': '66', 'type': 'block', 'children': ['67', '89']},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'secho'},{'id': '70', 'type': 'argument_list', 'children': ['71', '81', '84']},{'id': '71', 'type': 'call', 'children': ['72', '77']},{'id': '72', 'type': 'attribute', 'children': ['73', '76']},{'id': '73', 'type': 'concatenated_string', 'children': ['74', '75']},{'id': '74', 'type': 'string', 'children': [], 'value': 'u\'No versions found for "{0}". \''},{'id': '75', 'type': 'string', 'children': [], 'value': "u'Skipping. . .'"},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '81', 'type': 'keyword_argument', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'fg'},{'id': '83', 'type': 'string', 'children': [], 'value': "'red'"},{'id': '84', 'type': 'keyword_argument', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '89', 'type': 'continue_statement', 'children': []},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'call', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'echo_header'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'name_or_url'},{'id': '95', 'type': 'if_statement', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '99', 'type': 'block', 'children': ['100']},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'call', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '103', 'type': 'argument_list', 'children': ['104']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'call', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '110', 'type': 'argument_list', 'children': []},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'call', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '114', 'type': 'argument_list', 'children': ['115']},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'string', 'children': [], 'value': "'Latest release: {version:12}'"},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'keyword_argument', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'version'},{'id': '122', 'type': 'subscript', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '124', 'type': 'string', 'children': [], 'value': "'version'"},{'id': '125', 'type': 'if_statement', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'long_description'},{'id': '127', 'type': 'block', 'children': ['128', '132']},{'id': '128', 'type': 'expression_statement', 'children': ['129']},{'id': '129', 'type': 'call', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '131', 'type': 'argument_list', 'children': []},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'call', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'description'},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'call', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '142', 'type': 'argument_list', 'children': []},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'call', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'echo_download_summary'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'call', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '151', 'type': 'argument_list', 'children': []},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'assignment', 'children': ['154', '157']},{'id': '154', 'type': 'pattern_list', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'author'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'author_email'},{'id': '157', 'type': 'expression_list', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'author'},{'id': '161', 'type': 'attribute', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'author_email'},{'id': '164', 'type': 'if_statement', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'author'},{'id': '166', 'type': 'block', 'children': ['167']},{'id': '167', 'type': 'expression_statement', 'children': ['168']},{'id': '168', 'type': 'call', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '170', 'type': 'argument_list', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'string', 'children': [], 'value': "u'Author: {author:12}'"},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '175', 'type': 'argument_list', 'children': ['176']},{'id': '176', 'type': 'dictionary_splat', 'children': ['177']},{'id': '177', 'type': 'call', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'locals'},{'id': '179', 'type': 'argument_list', 'children': []},{'id': '180', 'type': 'if_statement', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'author_email'},{'id': '182', 'type': 'block', 'children': ['183']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'call', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '186', 'type': 'argument_list', 'children': ['187']},{'id': '187', 'type': 'call', 'children': ['188', '191']},{'id': '188', 'type': 'attribute', 'children': ['189', '190']},{'id': '189', 'type': 'string', 'children': [], 'value': "u'Author email: {author_email:12}'"},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '191', 'type': 'argument_list', 'children': ['192']},{'id': '192', 'type': 'dictionary_splat', 'children': ['193']},{'id': '193', 'type': 'call', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'locals'},{'id': '195', 'type': 'argument_list', 'children': []},{'id': '196', 'type': 'expression_statement', 'children': ['197']},{'id': '197', 'type': 'assignment', 'children': ['198', '201']},{'id': '198', 'type': 'pattern_list', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'maintainer'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'maintainer_email'},{'id': '201', 'type': 'tuple', 'children': ['202', '205']},{'id': '202', 'type': 'attribute', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'maintainer'},{'id': '205', 'type': 'attribute', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'maintainer_email'},{'id': '208', 'type': 'if_statement', 'children': ['209', '212']},{'id': '209', 'type': 'boolean_operator', 'children': ['210', '211'], 'value': 'or'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'maintainer'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'maintainer_email'},{'id': '212', 'type': 'block', 'children': ['213']},{'id': '213', 'type': 'expression_statement', 'children': ['214']},{'id': '214', 'type': 'call', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '216', 'type': 'argument_list', 'children': []},{'id': '217', 'type': 'if_statement', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'maintainer'},{'id': '219', 'type': 'block', 'children': ['220']},{'id': '220', 'type': 'expression_statement', 'children': ['221']},{'id': '221', 'type': 'call', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '223', 'type': 'argument_list', 'children': ['224']},{'id': '224', 'type': 'call', 'children': ['225', '228']},{'id': '225', 'type': 'attribute', 'children': ['226', '227']},{'id': '226', 'type': 'string', 'children': [], 'value': "u'Maintainer: {maintainer:12}'"},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '228', 'type': 'argument_list', 'children': ['229']},{'id': '229', 'type': 'dictionary_splat', 'children': ['230']},{'id': '230', 'type': 'call', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'locals'},{'id': '232', 'type': 'argument_list', 'children': []},{'id': '233', 'type': 'if_statement', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'maintainer_email'},{'id': '235', 'type': 'block', 'children': ['236']},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'call', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '239', 'type': 'argument_list', 'children': ['240']},{'id': '240', 'type': 'call', 'children': ['241', '244']},{'id': '241', 'type': 'attribute', 'children': ['242', '243']},{'id': '242', 'type': 'string', 'children': [], 'value': "u'Maintainer email: {maintainer_email:12}'"},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '244', 'type': 'argument_list', 'children': ['245']},{'id': '245', 'type': 'dictionary_splat', 'children': ['246']},{'id': '246', 'type': 'call', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'locals'},{'id': '248', 'type': 'argument_list', 'children': []},{'id': '249', 'type': 'expression_statement', 'children': ['250']},{'id': '250', 'type': 'call', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '252', 'type': 'argument_list', 'children': []},{'id': '253', 'type': 'expression_statement', 'children': ['254']},{'id': '254', 'type': 'call', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '256', 'type': 'argument_list', 'children': ['257']},{'id': '257', 'type': 'call', 'children': ['258', '261']},{'id': '258', 'type': 'attribute', 'children': ['259', '260']},{'id': '259', 'type': 'string', 'children': [], 'value': "u'PyPI URL: {pypi_url:12}'"},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '261', 'type': 'argument_list', 'children': ['262']},{'id': '262', 'type': 'keyword_argument', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'pypi_url'},{'id': '264', 'type': 'attribute', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'package_url'},{'id': '267', 'type': 'if_statement', 'children': ['268', '271']},{'id': '268', 'type': 'attribute', 'children': ['269', '270']},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'home_page'},{'id': '271', 'type': 'block', 'children': ['272']},{'id': '272', 'type': 'expression_statement', 'children': ['273']},{'id': '273', 'type': 'call', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '275', 'type': 'argument_list', 'children': ['276']},{'id': '276', 'type': 'call', 'children': ['277', '280']},{'id': '277', 'type': 'attribute', 'children': ['278', '279']},{'id': '278', 'type': 'string', 'children': [], 'value': "u'Home Page: {home_page:12}'"},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '280', 'type': 'argument_list', 'children': ['281']},{'id': '281', 'type': 'keyword_argument', 'children': ['282', '283']},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'home_page'},{'id': '283', 'type': 'attribute', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'home_page'},{'id': '286', 'type': 'if_statement', 'children': ['287', '290']},{'id': '287', 'type': 'attribute', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'docs_url'},{'id': '290', 'type': 'block', 'children': ['291']},{'id': '291', 'type': 'expression_statement', 'children': ['292']},{'id': '292', 'type': 'call', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '294', 'type': 'argument_list', 'children': ['295']},{'id': '295', 'type': 'call', 'children': ['296', '299']},{'id': '296', 'type': 'attribute', 'children': ['297', '298']},{'id': '297', 'type': 'string', 'children': [], 'value': "u'Documentation: {docs_url:12}'"},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '299', 'type': 'argument_list', 'children': ['300']},{'id': '300', 'type': 'keyword_argument', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'docs_url'},{'id': '302', 'type': 'attribute', 'children': ['303', '304']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'docs_url'},{'id': '305', 'type': 'if_statement', 'children': ['306', '307']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'classifiers'},{'id': '307', 'type': 'block', 'children': ['308', '312', '317']},{'id': '308', 'type': 'expression_statement', 'children': ['309']},{'id': '309', 'type': 'call', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '311', 'type': 'argument_list', 'children': []},{'id': '312', 'type': 'expression_statement', 'children': ['313']},{'id': '313', 'type': 'call', 'children': ['314', '315']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '315', 'type': 'argument_list', 'children': ['316']},{'id': '316', 'type': 'string', 'children': [], 'value': "u'Classifiers: '"},{'id': '317', 'type': 'for_statement', 'children': ['318', '319', '326']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'each'},{'id': '319', 'type': 'call', 'children': ['320', '323']},{'id': '320', 'type': 'attribute', 'children': ['321', '322']},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '323', 'type': 'argument_list', 'children': ['324', '325']},{'id': '324', 'type': 'string', 'children': [], 'value': "'classifiers'"},{'id': '325', 'type': 'list', 'children': [], 'value': '[]'},{'id': '326', 'type': 'block', 'children': ['327']},{'id': '327', 'type': 'expression_statement', 'children': ['328']},{'id': '328', 'type': 'call', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '330', 'type': 'argument_list', 'children': ['331']},{'id': '331', 'type': 'binary_operator', 'children': ['332', '333'], 'value': '+'},{'id': '332', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '333', 'type': 'identifier', 'children': [], 'value': 'each'},{'id': '334', 'type': 'if_statement', 'children': ['335', '340']},{'id': '335', 'type': 'boolean_operator', 'children': ['336', '337'], 'value': 'and'},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'license'},{'id': '337', 'type': 'attribute', 'children': ['338', '339']},{'id': '338', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'license'},{'id': '340', 'type': 'block', 'children': ['341', '345', '353', '378']},{'id': '341', 'type': 'expression_statement', 'children': ['342']},{'id': '342', 'type': 'call', 'children': ['343', '344']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '344', 'type': 'argument_list', 'children': []},{'id': '345', 'type': 'expression_statement', 'children': ['346']},{'id': '346', 'type': 'call', 'children': ['347', '348']},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '348', 'type': 'argument_list', 'children': ['349', '350']},{'id': '349', 'type': 'string', 'children': [], 'value': "u'License: '"},{'id': '350', 'type': 'keyword_argument', 'children': ['351', '352']},{'id': '351', 'type': 'identifier', 'children': [], 'value': 'nl'},{'id': '352', 'type': 'False', 'children': []},{'id': '353', 'type': 'if_statement', 'children': ['354', '373']},{'id': '354', 'type': 'boolean_operator', 'children': ['355', '365'], 'value': 'or'},{'id': '355', 'type': 'comparison_operator', 'children': ['356', '364'], 'value': '>='},{'id': '356', 'type': 'call', 'children': ['357', '362']},{'id': '357', 'type': 'attribute', 'children': ['358', '361']},{'id': '358', 'type': 'attribute', 'children': ['359', '360']},{'id': '359', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'license'},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'find'},{'id': '362', 'type': 'argument_list', 'children': ['363']},{'id': '363', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '364', 'type': 'integer', 'children': [], 'value': '0'},{'id': '365', 'type': 'comparison_operator', 'children': ['366', '372'], 'value': '>'},{'id': '366', 'type': 'call', 'children': ['367', '368']},{'id': '367', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '368', 'type': 'argument_list', 'children': ['369']},{'id': '369', 'type': 'attribute', 'children': ['370', '371']},{'id': '370', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '371', 'type': 'identifier', 'children': [], 'value': 'license'},{'id': '372', 'type': 'integer', 'children': [], 'value': '80'},{'id': '373', 'type': 'block', 'children': ['374']},{'id': '374', 'type': 'expression_statement', 'children': ['375']},{'id': '375', 'type': 'call', 'children': ['376', '377']},{'id': '376', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '377', 'type': 'argument_list', 'children': []},{'id': '378', 'type': 'expression_statement', 'children': ['379']},{'id': '379', 'type': 'call', 'children': ['380', '381']},{'id': '380', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '381', 'type': 'argument_list', 'children': ['382']},{'id': '382', 'type': 'attribute', 'children': ['383', '384']},{'id': '383', 'type': 'identifier', 'children': [], 'value': 'package'},{'id': '384', 'type': 'identifier', 'children': [], 'value': 'license'},{'id': '385', 'type': 'expression_statement', 'children': ['386']},{'id': '386', 'type': 'call', 'children': ['387', '388']},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '388', 'type': 'argument_list', 'children': []} | def info(package, long_description, classifiers, license):
client = requests.Session()
for name_or_url in package:
package = get_package(name_or_url, client)
if not package:
secho(u'Invalid name or URL: "{name}"'.format(name=name_or_url),
fg='red', file=sys.stderr)
continue
try:
info = package.data['info']
except NotFoundError:
secho(u'No versions found for "{0}". '
u'Skipping. . .'.format(package.name),
fg='red', file=sys.stderr)
continue
echo_header(name_or_url)
if package.summary:
echo(package.summary)
echo()
echo('Latest release: {version:12}'.format(version=info['version']))
if long_description:
echo()
echo(package.description)
echo()
echo_download_summary(package)
echo()
author, author_email = package.author, package.author_email
if author:
echo(u'Author: {author:12}'.format(**locals()))
if author_email:
echo(u'Author email: {author_email:12}'.format(**locals()))
maintainer, maintainer_email = (package.maintainer,
package.maintainer_email)
if maintainer or maintainer_email:
echo()
if maintainer:
echo(u'Maintainer: {maintainer:12}'.format(**locals()))
if maintainer_email:
echo(u'Maintainer email: {maintainer_email:12}'.format(**locals()))
echo()
echo(u'PyPI URL: {pypi_url:12}'.format(pypi_url=package.package_url))
if package.home_page:
echo(u'Home Page: {home_page:12}'.format(
home_page=package.home_page))
if package.docs_url:
echo(u'Documentation: {docs_url:12}'.format(
docs_url=package.docs_url))
if classifiers:
echo()
echo(u'Classifiers: ')
for each in info.get('classifiers', []):
echo('\t' + each)
if license and package.license:
echo()
echo(u'License: ', nl=False)
if package.license.find('\n') >= 0 or len(package.license) > 80:
echo()
echo(package.license)
echo() |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'install_packages'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'packages'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'what_for'},{'id': '7', 'type': 'string', 'children': [], 'value': "'for a complete setup to work properly'"},{'id': '8', 'type': 'block', 'children': ['9', '11', '15', '22', '31', '193']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'string', 'children': [], 'value': "'''Try to install .deb packages given by list.\n Return True, if packages could be installed or are installed already, or if\n they cannot be installed but the user gives feedback to continue.\n Else return False.\n '''"},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '14', 'type': 'True', 'children': []},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'non_installed_packages'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': '_non_installed'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'packages'},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'packages_str'},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'string', 'children': [], 'value': "' '"},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'non_installed_packages'},{'id': '31', 'type': 'if_statement', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'non_installed_packages'},{'id': '33', 'type': 'block', 'children': ['34', '47', '51', '55', '59', '161', '172']},{'id': '34', 'type': 'with_statement', 'children': ['35', '40']},{'id': '35', 'type': 'with_clause', 'children': ['36']},{'id': '36', 'type': 'with_item', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'quiet'},{'id': '39', 'type': 'argument_list', 'children': []},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'dpkg'},{'id': '44', 'type': 'call', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': '_has_dpkg'},{'id': '46', 'type': 'argument_list', 'children': []},{'id': '47', 'type': 'expression_statement', 'children': ['48']},{'id': '48', 'type': 'assignment', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'hint'},{'id': '50', 'type': 'string', 'children': [], 'value': "' (You may have to install them manually)'"},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'do_install'},{'id': '54', 'type': 'False', 'children': []},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'go_on'},{'id': '58', 'type': 'True', 'children': []},{'id': '59', 'type': 'if_statement', 'children': ['60', '61', '119']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'dpkg'},{'id': '61', 'type': 'block', 'children': ['62']},{'id': '62', 'type': 'if_statement', 'children': ['63', '67', '72']},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': '_is_sudoer'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'string', 'children': [], 'value': "'Want to install dpkg packages'"},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'do_install'},{'id': '71', 'type': 'True', 'children': []},{'id': '72', 'type': 'else_clause', 'children': ['73']},{'id': '73', 'type': 'block', 'children': ['74', '78', '101', '105']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '77'], 'value': 'is'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'do_install'},{'id': '77', 'type': 'False', 'children': []},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'assignment', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '81', 'type': 'call', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'yellow'},{'id': '83', 'type': 'argument_list', 'children': ['84']},{'id': '84', 'type': 'call', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'string', 'children': [], 'value': "' '"},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'list', 'children': ['90', '91', '95'], 'value': '[\n \'This deb packages are missing to be installed\',\n flo("{what_for}: "), \', \'.join(non_installed_packages),\n ]'},{'id': '90', 'type': 'string', 'children': [], 'value': "'This deb packages are missing to be installed'"},{'id': '91', 'type': 'call', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'flo'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'string', 'children': [], 'value': '"{what_for}: "'},{'id': '95', 'type': 'call', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'string', 'children': [], 'value': "', '"},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '99', 'type': 'argument_list', 'children': ['100']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'non_installed_packages'},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'assignment', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'question'},{'id': '104', 'type': 'string', 'children': [], 'value': "' Continue anyway?'"},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'assignment', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'go_on'},{'id': '108', 'type': 'call', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'query_yes_no'},{'id': '110', 'type': 'argument_list', 'children': ['111', '116']},{'id': '111', 'type': 'binary_operator', 'children': ['112', '115'], 'value': '+'},{'id': '112', 'type': 'binary_operator', 'children': ['113', '114'], 'value': '+'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'hint'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'question'},{'id': '116', 'type': 'keyword_argument', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '118', 'type': 'string', 'children': [], 'value': "'no'"},{'id': '119', 'type': 'else_clause', 'children': ['120']},{'id': '120', 'type': 'block', 'children': ['121', '125', '147']},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'assignment', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'do_install'},{'id': '124', 'type': 'False', 'children': []},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '128', 'type': 'call', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'yellow'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'string', 'children': [], 'value': "' '"},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'list', 'children': ['137', '141'], 'value': "[\n flo('Required {what_for}: '),\n ', '.join(non_installed_packages),\n ]"},{'id': '137', 'type': 'call', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'flo'},{'id': '139', 'type': 'argument_list', 'children': ['140']},{'id': '140', 'type': 'string', 'children': [], 'value': "'Required {what_for}: '"},{'id': '141', 'type': 'call', 'children': ['142', '145']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'string', 'children': [], 'value': "', '"},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '145', 'type': 'argument_list', 'children': ['146']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'non_installed_packages'},{'id': '147', 'type': 'expression_statement', 'children': ['148']},{'id': '148', 'type': 'assignment', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'go_on'},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'query_yes_no'},{'id': '152', 'type': 'argument_list', 'children': ['153', '158']},{'id': '153', 'type': 'binary_operator', 'children': ['154', '157'], 'value': '+'},{'id': '154', 'type': 'binary_operator', 'children': ['155', '156'], 'value': '+'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'hint'},{'id': '157', 'type': 'string', 'children': [], 'value': "' Continue?'"},{'id': '158', 'type': 'keyword_argument', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '160', 'type': 'string', 'children': [], 'value': "'yes'"},{'id': '161', 'type': 'if_statement', 'children': ['162', '164']},{'id': '162', 'type': 'not_operator', 'children': ['163']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'go_on'},{'id': '164', 'type': 'block', 'children': ['165']},{'id': '165', 'type': 'expression_statement', 'children': ['166']},{'id': '166', 'type': 'call', 'children': ['167', '170']},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '170', 'type': 'argument_list', 'children': ['171']},{'id': '171', 'type': 'string', 'children': [], 'value': "'Abort'"},{'id': '172', 'type': 'if_statement', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'do_install'},{'id': '174', 'type': 'block', 'children': ['175', '182']},{'id': '175', 'type': 'expression_statement', 'children': ['176']},{'id': '176', 'type': 'assignment', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'command'},{'id': '178', 'type': 'call', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'flo'},{'id': '180', 'type': 'argument_list', 'children': ['181']},{'id': '181', 'type': 'string', 'children': [], 'value': "'sudo apt-get install {packages_str}'"},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '185', 'type': 'comparison_operator', 'children': ['186', '192'], 'value': '=='},{'id': '186', 'type': 'attribute', 'children': ['187', '191']},{'id': '187', 'type': 'call', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'run'},{'id': '189', 'type': 'argument_list', 'children': ['190']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'command'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'return_code'},{'id': '192', 'type': 'integer', 'children': [], 'value': '0'},{'id': '193', 'type': 'return_statement', 'children': ['194']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'res'} | def install_packages(packages,
what_for='for a complete setup to work properly'):
'''Try to install .deb packages given by list.
Return True, if packages could be installed or are installed already, or if
they cannot be installed but the user gives feedback to continue.
Else return False.
'''
res = True
non_installed_packages = _non_installed(packages)
packages_str = ' '.join(non_installed_packages)
if non_installed_packages:
with quiet():
dpkg = _has_dpkg()
hint = ' (You may have to install them manually)'
do_install = False
go_on = True
if dpkg:
if _is_sudoer('Want to install dpkg packages'):
do_install = True
else:
do_install is False
info = yellow(' '.join([
'This deb packages are missing to be installed',
flo("{what_for}: "), ', '.join(non_installed_packages),
]))
question = ' Continue anyway?'
go_on = query_yes_no(info + hint + question, default='no')
else:
do_install = False
info = yellow(' '.join([
flo('Required {what_for}: '),
', '.join(non_installed_packages),
]))
go_on = query_yes_no(info + hint + ' Continue?', default='yes')
if not go_on:
sys.exit('Abort')
if do_install:
command = flo('sudo apt-get install {packages_str}')
res = run(command).return_code == 0
return res |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'scan'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '7', 'type': 'integer', 'children': [], 'value': '80'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'https'},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'timeout'},{'id': '16', 'type': 'integer', 'children': [], 'value': '1'},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'max_size'},{'id': '19', 'type': 'integer', 'children': [], 'value': '65535'},{'id': '20', 'type': 'block', 'children': ['21', '27', '33', '40', '60', '73', '89', '131', '143', '157', '164', '175', '187', '238', '365', '371', '383', '414', '425']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'starts'},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '26', 'type': 'argument_list', 'children': []},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'ends'},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '32', 'type': 'argument_list', 'children': []},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '45', 'type': 'argument_list', 'children': ['46', '49', '52', '55']},{'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'state'},{'id': '54', 'type': 'string', 'children': [], 'value': "'closed'"},{'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'durations'},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '59', 'type': 'argument_list', 'children': []},{'id': '60', 'type': 'if_statement', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '62', 'type': 'block', 'children': ['63', '67']},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'timeout'},{'id': '66', 'type': 'integer', 'children': [], 'value': '1'},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'assignment', 'children': ['69', '72']},{'id': '69', 'type': 'subscript', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '71', 'type': 'string', 'children': [], 'value': "'code'"},{'id': '72', 'type': 'None', 'children': []},{'id': '73', 'type': 'expression_statement', 'children': ['74']},{'id': '74', 'type': 'assignment', 'children': ['75', '78']},{'id': '75', 'type': 'subscript', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'starts'},{'id': '77', 'type': 'string', 'children': [], 'value': "'all'"},{'id': '78', 'type': 'assignment', 'children': ['79', '82']},{'id': '79', 'type': 'subscript', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'starts'},{'id': '81', 'type': 'string', 'children': [], 'value': "'dns'"},{'id': '82', 'type': 'call', 'children': ['83', '88']},{'id': '83', 'type': 'attribute', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '88', 'type': 'argument_list', 'children': []},{'id': '89', 'type': 'try_statement', 'children': ['90', '118']},{'id': '90', 'type': 'block', 'children': ['91', '100', '106']},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'hostip'},{'id': '94', 'type': 'call', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'gethostbyname'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'assignment', 'children': ['102', '105']},{'id': '102', 'type': 'subscript', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '104', 'type': 'string', 'children': [], 'value': "'ip'"},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'hostip'},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'assignment', 'children': ['108', '111']},{'id': '108', 'type': 'subscript', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'ends'},{'id': '110', 'type': 'string', 'children': [], 'value': "'dns'"},{'id': '111', 'type': 'call', 'children': ['112', '117']},{'id': '112', 'type': 'attribute', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '117', 'type': 'argument_list', 'children': []},{'id': '118', 'type': 'except_clause', 'children': ['119', '122']},{'id': '119', 'type': 'attribute', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'gaierror'},{'id': '122', 'type': 'block', 'children': ['123']},{'id': '123', 'type': 'raise_statement', 'children': ['124']},{'id': '124', 'type': 'call', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'ScanFailed'},{'id': '126', 'type': 'argument_list', 'children': ['127', '128']},{'id': '127', 'type': 'string', 'children': [], 'value': "'DNS Lookup failed'"},{'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'assignment', 'children': ['133', '136']},{'id': '133', 'type': 'subscript', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'starts'},{'id': '135', 'type': 'string', 'children': [], 'value': "'connect'"},{'id': '136', 'type': 'call', 'children': ['137', '142']},{'id': '137', 'type': 'attribute', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '142', 'type': 'argument_list', 'children': []},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'assignment', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'network_socket'},{'id': '146', 'type': 'call', 'children': ['147', '150']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '150', 'type': 'argument_list', 'children': ['151', '154']},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'AF_INET'},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'SOCK_STREAM'},{'id': '157', 'type': 'expression_statement', 'children': ['158']},{'id': '158', 'type': 'call', 'children': ['159', '162']},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'network_socket'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'settimeout'},{'id': '162', 'type': 'argument_list', 'children': ['163']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'timeout'},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'result_connection'},{'id': '167', 'type': 'call', 'children': ['168', '171']},{'id': '168', 'type': 'attribute', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'network_socket'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'connect_ex'},{'id': '171', 'type': 'argument_list', 'children': ['172']},{'id': '172', 'type': 'tuple', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'hostip'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '175', 'type': 'expression_statement', 'children': ['176']},{'id': '176', 'type': 'assignment', 'children': ['177', '180']},{'id': '177', 'type': 'subscript', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'ends'},{'id': '179', 'type': 'string', 'children': [], 'value': "'connect'"},{'id': '180', 'type': 'call', 'children': ['181', '186']},{'id': '181', 'type': 'attribute', 'children': ['182', '185']},{'id': '182', 'type': 'attribute', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '186', 'type': 'argument_list', 'children': []},{'id': '187', 'type': 'if_statement', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'https'},{'id': '189', 'type': 'block', 'children': ['190', '202', '226']},{'id': '190', 'type': 'expression_statement', 'children': ['191']},{'id': '191', 'type': 'assignment', 'children': ['192', '195']},{'id': '192', 'type': 'subscript', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'starts'},{'id': '194', 'type': 'string', 'children': [], 'value': "'ssl'"},{'id': '195', 'type': 'call', 'children': ['196', '201']},{'id': '196', 'type': 'attribute', 'children': ['197', '200']},{'id': '197', 'type': 'attribute', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '201', 'type': 'argument_list', 'children': []},{'id': '202', 'type': 'try_statement', 'children': ['203', '213']},{'id': '203', 'type': 'block', 'children': ['204']},{'id': '204', 'type': 'expression_statement', 'children': ['205']},{'id': '205', 'type': 'assignment', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'network_socket'},{'id': '207', 'type': 'call', 'children': ['208', '211']},{'id': '208', 'type': 'attribute', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'ssl'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'wrap_socket'},{'id': '211', 'type': 'argument_list', 'children': ['212']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'network_socket'},{'id': '213', 'type': 'except_clause', 'children': ['214', '217']},{'id': '214', 'type': 'attribute', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'socket'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'timeout'},{'id': '217', 'type': 'block', 'children': ['218']},{'id': '218', 'type': 'raise_statement', 'children': ['219']},{'id': '219', 'type': 'call', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'ScanFailed'},{'id': '221', 'type': 'argument_list', 'children': ['222', '223']},{'id': '222', 'type': 'string', 'children': [], 'value': "'SSL socket timeout'"},{'id': '223', 'type': 'keyword_argument', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '226', 'type': 'expression_statement', 'children': ['227']},{'id': '227', 'type': 'assignment', 'children': ['228', '231']},{'id': '228', 'type': 'subscript', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'ends'},{'id': '230', 'type': 'string', 'children': [], 'value': "'ssl'"},{'id': '231', 'type': 'call', 'children': ['232', '237']},{'id': '232', 'type': 'attribute', 'children': ['233', '236']},{'id': '233', 'type': 'attribute', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '237', 'type': 'argument_list', 'children': []},{'id': '238', 'type': 'if_statement', 'children': ['239', '244']},{'id': '239', 'type': 'boolean_operator', 'children': ['240', '243'], 'value': 'and'},{'id': '240', 'type': 'comparison_operator', 'children': ['241', '242'], 'value': '=='},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'result_connection'},{'id': '242', 'type': 'integer', 'children': [], 'value': '0'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '244', 'type': 'block', 'children': ['245', '257', '275', '297', '306', '318', '325', '353']},{'id': '245', 'type': 'expression_statement', 'children': ['246']},{'id': '246', 'type': 'assignment', 'children': ['247', '250']},{'id': '247', 'type': 'subscript', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'starts'},{'id': '249', 'type': 'string', 'children': [], 'value': "'request'"},{'id': '250', 'type': 'call', 'children': ['251', '256']},{'id': '251', 'type': 'attribute', 'children': ['252', '255']},{'id': '252', 'type': 'attribute', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '256', 'type': 'argument_list', 'children': []},{'id': '257', 'type': 'expression_statement', 'children': ['258']},{'id': '258', 'type': 'call', 'children': ['259', '262']},{'id': '259', 'type': 'attribute', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'network_socket'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'send'},{'id': '262', 'type': 'argument_list', 'children': ['263']},{'id': '263', 'type': 'call', 'children': ['264', '273']},{'id': '264', 'type': 'attribute', 'children': ['265', '272']},{'id': '265', 'type': 'call', 'children': ['266', '269']},{'id': '266', 'type': 'attribute', 'children': ['267', '268']},{'id': '267', 'type': 'string', 'children': [], 'value': '"GET {0} HTTP/1.0\\r\\nHost: {1}\\r\\n\\r\\n"'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '269', 'type': 'argument_list', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '273', 'type': 'argument_list', 'children': ['274']},{'id': '274', 'type': 'string', 'children': [], 'value': "'ascii'"},{'id': '275', 'type': 'if_statement', 'children': ['276', '277', '287']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'max_size'},{'id': '277', 'type': 'block', 'children': ['278']},{'id': '278', 'type': 'expression_statement', 'children': ['279']},{'id': '279', 'type': 'assignment', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '281', 'type': 'call', 'children': ['282', '285']},{'id': '282', 'type': 'attribute', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'network_socket'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'recv'},{'id': '285', 'type': 'argument_list', 'children': ['286']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'max_size'},{'id': '287', 'type': 'else_clause', 'children': ['288']},{'id': '288', 'type': 'block', 'children': ['289']},{'id': '289', 'type': 'expression_statement', 'children': ['290']},{'id': '290', 'type': 'assignment', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '292', 'type': 'call', 'children': ['293', '296']},{'id': '293', 'type': 'attribute', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'network_socket'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'recv'},{'id': '296', 'type': 'argument_list', 'children': []},{'id': '297', 'type': 'expression_statement', 'children': ['298']},{'id': '298', 'type': 'assignment', 'children': ['299', '302']},{'id': '299', 'type': 'subscript', 'children': ['300', '301']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '301', 'type': 'string', 'children': [], 'value': "'length'"},{'id': '302', 'type': 'call', 'children': ['303', '304']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '304', 'type': 'argument_list', 'children': ['305']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '306', 'type': 'expression_statement', 'children': ['307']},{'id': '307', 'type': 'assignment', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '309', 'type': 'call', 'children': ['310', '313']},{'id': '310', 'type': 'attribute', 'children': ['311', '312']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '313', 'type': 'argument_list', 'children': ['314', '315']},{'id': '314', 'type': 'string', 'children': [], 'value': "'ascii'"},{'id': '315', 'type': 'keyword_argument', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '317', 'type': 'string', 'children': [], 'value': "'ignore'"},{'id': '318', 'type': 'expression_statement', 'children': ['319']},{'id': '319', 'type': 'assignment', 'children': ['320', '323']},{'id': '320', 'type': 'subscript', 'children': ['321', '322']},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '322', 'type': 'string', 'children': [], 'value': "'response'"},{'id': '323', 'type': '()', 'children': ['324']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '325', 'type': 'try_statement', 'children': ['326', '349']},{'id': '326', 'type': 'block', 'children': ['327']},{'id': '327', 'type': 'expression_statement', 'children': ['328']},{'id': '328', 'type': 'assignment', 'children': ['329', '332']},{'id': '329', 'type': 'subscript', 'children': ['330', '331']},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '331', 'type': 'string', 'children': [], 'value': "'code'"},{'id': '332', 'type': 'call', 'children': ['333', '334']},{'id': '333', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '334', 'type': 'argument_list', 'children': ['335']},{'id': '335', 'type': 'subscript', 'children': ['336', '348']},{'id': '336', 'type': 'call', 'children': ['337', '347']},{'id': '337', 'type': 'attribute', 'children': ['338', '346']},{'id': '338', 'type': 'subscript', 'children': ['339', '345']},{'id': '339', 'type': 'call', 'children': ['340', '343']},{'id': '340', 'type': 'attribute', 'children': ['341', '342']},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '342', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '343', 'type': 'argument_list', 'children': ['344']},{'id': '344', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '345', 'type': 'integer', 'children': [], 'value': '0'},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '347', 'type': 'argument_list', 'children': []},{'id': '348', 'type': 'integer', 'children': [], 'value': '1'},{'id': '349', 'type': 'except_clause', 'children': ['350', '351']},{'id': '350', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '351', 'type': 'block', 'children': ['352']},{'id': '352', 'type': 'pass_statement', 'children': []},{'id': '353', 'type': 'expression_statement', 'children': ['354']},{'id': '354', 'type': 'assignment', 'children': ['355', '358']},{'id': '355', 'type': 'subscript', 'children': ['356', '357']},{'id': '356', 'type': 'identifier', 'children': [], 'value': 'ends'},{'id': '357', 'type': 'string', 'children': [], 'value': "'request'"},{'id': '358', 'type': 'call', 'children': ['359', '364']},{'id': '359', 'type': 'attribute', 'children': ['360', '363']},{'id': '360', 'type': 'attribute', 'children': ['361', '362']},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '362', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '363', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '364', 'type': 'argument_list', 'children': []},{'id': '365', 'type': 'expression_statement', 'children': ['366']},{'id': '366', 'type': 'call', 'children': ['367', '370']},{'id': '367', 'type': 'attribute', 'children': ['368', '369']},{'id': '368', 'type': 'identifier', 'children': [], 'value': 'network_socket'},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '370', 'type': 'argument_list', 'children': []},{'id': '371', 'type': 'expression_statement', 'children': ['372']},{'id': '372', 'type': 'assignment', 'children': ['373', '376']},{'id': '373', 'type': 'subscript', 'children': ['374', '375']},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'ends'},{'id': '375', 'type': 'string', 'children': [], 'value': "'all'"},{'id': '376', 'type': 'call', 'children': ['377', '382']},{'id': '377', 'type': 'attribute', 'children': ['378', '381']},{'id': '378', 'type': 'attribute', 'children': ['379', '380']},{'id': '379', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '380', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '381', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '382', 'type': 'argument_list', 'children': []},{'id': '383', 'type': 'for_statement', 'children': ['384', '385', '390']},{'id': '384', 'type': 'identifier', 'children': [], 'value': 'duration'},{'id': '385', 'type': 'call', 'children': ['386', '389']},{'id': '386', 'type': 'attribute', 'children': ['387', '388']},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'starts'},{'id': '388', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '389', 'type': 'argument_list', 'children': []},{'id': '390', 'type': 'block', 'children': ['391']},{'id': '391', 'type': 'if_statement', 'children': ['392', '399']},{'id': '392', 'type': 'comparison_operator', 'children': ['393', '394'], 'value': 'in'},{'id': '393', 'type': 'identifier', 'children': [], 'value': 'duration'},{'id': '394', 'type': 'call', 'children': ['395', '398']},{'id': '395', 'type': 'attribute', 'children': ['396', '397']},{'id': '396', 'type': 'identifier', 'children': [], 'value': 'ends'},{'id': '397', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '398', 'type': 'argument_list', 'children': []},{'id': '399', 'type': 'block', 'children': ['400']},{'id': '400', 'type': 'expression_statement', 'children': ['401']},{'id': '401', 'type': 'assignment', 'children': ['402', '407']},{'id': '402', 'type': 'subscript', 'children': ['403', '406']},{'id': '403', 'type': 'subscript', 'children': ['404', '405']},{'id': '404', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '405', 'type': 'string', 'children': [], 'value': "'durations'"},{'id': '406', 'type': 'identifier', 'children': [], 'value': 'duration'},{'id': '407', 'type': 'binary_operator', 'children': ['408', '411'], 'value': '-'},{'id': '408', 'type': 'subscript', 'children': ['409', '410']},{'id': '409', 'type': 'identifier', 'children': [], 'value': 'ends'},{'id': '410', 'type': 'identifier', 'children': [], 'value': 'duration'},{'id': '411', 'type': 'subscript', 'children': ['412', '413']},{'id': '412', 'type': 'identifier', 'children': [], 'value': 'starts'},{'id': '413', 'type': 'identifier', 'children': [], 'value': 'duration'},{'id': '414', 'type': 'if_statement', 'children': ['415', '418']},{'id': '415', 'type': 'comparison_operator', 'children': ['416', '417'], 'value': '=='},{'id': '416', 'type': 'identifier', 'children': [], 'value': 'result_connection'},{'id': '417', 'type': 'integer', 'children': [], 'value': '0'},{'id': '418', 'type': 'block', 'children': ['419']},{'id': '419', 'type': 'expression_statement', 'children': ['420']},{'id': '420', 'type': 'assignment', 'children': ['421', '424']},{'id': '421', 'type': 'subscript', 'children': ['422', '423']},{'id': '422', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '423', 'type': 'string', 'children': [], 'value': "'state'"},{'id': '424', 'type': 'string', 'children': [], 'value': "'open'"},{'id': '425', 'type': 'return_statement', 'children': ['426']},{'id': '426', 'type': 'identifier', 'children': [], 'value': 'result'} | def scan(host, port=80, url=None, https=False, timeout=1, max_size=65535):
starts = OrderedDict()
ends = OrderedDict()
port = int(port)
result = dict(
host=host, port=port, state='closed', durations=OrderedDict()
)
if url:
timeout = 1
result['code'] = None
starts['all'] = starts['dns'] = datetime.datetime.now()
try:
hostip = socket.gethostbyname(host)
result['ip'] = hostip
ends['dns'] = datetime.datetime.now()
except socket.gaierror:
raise ScanFailed('DNS Lookup failed', result=result)
starts['connect'] = datetime.datetime.now()
network_socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
network_socket.settimeout(timeout)
result_connection = network_socket.connect_ex((hostip, port))
ends['connect'] = datetime.datetime.now()
if https:
starts['ssl'] = datetime.datetime.now()
try:
network_socket = ssl.wrap_socket(network_socket)
except socket.timeout:
raise ScanFailed('SSL socket timeout', result=result)
ends['ssl'] = datetime.datetime.now()
if result_connection == 0 and url:
starts['request'] = datetime.datetime.now()
network_socket.send(
"GET {0} HTTP/1.0\r\nHost: {1}\r\n\r\n".format(
url, host
).encode('ascii'))
if max_size:
data = network_socket.recv(max_size)
else:
data = network_socket.recv()
result['length'] = len(data)
data = data.decode('ascii', errors='ignore')
result['response'] = (data)
try:
result['code'] = int(data.split('\n')[0].split()[1])
except IndexError:
pass
ends['request'] = datetime.datetime.now()
network_socket.close()
ends['all'] = datetime.datetime.now()
for duration in starts.keys():
if duration in ends.keys():
result['durations'][duration] = ends[duration] - starts[duration]
if result_connection == 0:
result['state'] = 'open'
return result |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '45']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'redirect'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18', '21', '24', '27', '30', '33', '36', '39', '42']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'permanent'},{'id': '8', 'type': 'True', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'locale_prefix'},{'id': '11', 'type': 'True', 'children': []},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'anchor'},{'id': '14', 'type': 'None', 'children': []},{'id': '15', 'type': 'default_parameter', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '17', 'type': 'None', 'children': []},{'id': '18', 'type': 'default_parameter', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '20', 'type': 'None', 'children': []},{'id': '21', 'type': 'default_parameter', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'vary'},{'id': '23', 'type': 'None', 'children': []},{'id': '24', 'type': 'default_parameter', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'cache_timeout'},{'id': '26', 'type': 'integer', 'children': [], 'value': '12'},{'id': '27', 'type': 'default_parameter', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'decorators'},{'id': '29', 'type': 'None', 'children': []},{'id': '30', 'type': 'default_parameter', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 're_flags'},{'id': '32', 'type': 'None', 'children': []},{'id': '33', 'type': 'default_parameter', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'to_args'},{'id': '35', 'type': 'None', 'children': []},{'id': '36', 'type': 'default_parameter', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'to_kwargs'},{'id': '38', 'type': 'None', 'children': []},{'id': '39', 'type': 'default_parameter', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'prepend_locale'},{'id': '41', 'type': 'True', 'children': []},{'id': '42', 'type': 'default_parameter', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'merge_query'},{'id': '44', 'type': 'False', 'children': []},{'id': '45', 'type': 'block', 'children': ['46', '59', '77', '91', '95', '110', '136', '161', '429', '457']},{'id': '46', 'type': 'if_statement', 'children': ['47', '48', '53']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'permanent'},{'id': '48', 'type': 'block', 'children': ['49']},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'redirect_class'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'HttpResponsePermanentRedirect'},{'id': '53', 'type': 'else_clause', 'children': ['54']},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'redirect_class'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'HttpResponseRedirect'},{'id': '59', 'type': 'if_statement', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'locale_prefix'},{'id': '61', 'type': 'block', 'children': ['62', '71']},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'assignment', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '65', 'type': 'call', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'lstrip'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'string', 'children': [], 'value': "'^/'"},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'assignment', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '74', 'type': 'binary_operator', 'children': ['75', '76'], 'value': '+'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'LOCALE_RE'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '77', 'type': 'if_statement', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 're_flags'},{'id': '79', 'type': 'block', 'children': ['80']},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '83', 'type': 'binary_operator', 'children': ['84', '90'], 'value': '+'},{'id': '84', 'type': 'call', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'string', 'children': [], 'value': "'(?{})'"},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 're_flags'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'view_decorators'},{'id': '94', 'type': 'list', 'children': [], 'value': '[]'},{'id': '95', 'type': 'if_statement', 'children': ['96', '99']},{'id': '96', 'type': 'comparison_operator', 'children': ['97', '98'], 'value': 'is'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'cache_timeout'},{'id': '98', 'type': 'None', 'children': []},{'id': '99', 'type': 'block', 'children': ['100']},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'view_decorators'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'call', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'cache_control_expires'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'cache_timeout'},{'id': '110', 'type': 'if_statement', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'vary'},{'id': '112', 'type': 'block', 'children': ['113', '125']},{'id': '113', 'type': 'if_statement', 'children': ['114', '119']},{'id': '114', 'type': 'call', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '116', 'type': 'argument_list', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'vary'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'basestring'},{'id': '119', 'type': 'block', 'children': ['120']},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'assignment', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'vary'},{'id': '123', 'type': 'list', 'children': ['124'], 'value': '[vary]'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'vary'},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'view_decorators'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'vary_on_headers'},{'id': '133', 'type': 'argument_list', 'children': ['134']},{'id': '134', 'type': 'list_splat', 'children': ['135']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'vary'},{'id': '136', 'type': 'if_statement', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'decorators'},{'id': '138', 'type': 'block', 'children': ['139']},{'id': '139', 'type': 'if_statement', 'children': ['140', '144', '152']},{'id': '140', 'type': 'call', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'callable'},{'id': '142', 'type': 'argument_list', 'children': ['143']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'decorators'},{'id': '144', 'type': 'block', 'children': ['145']},{'id': '145', 'type': 'expression_statement', 'children': ['146']},{'id': '146', 'type': 'call', 'children': ['147', '150']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'view_decorators'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '150', 'type': 'argument_list', 'children': ['151']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'decorators'},{'id': '152', 'type': 'else_clause', 'children': ['153']},{'id': '153', 'type': 'block', 'children': ['154']},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'call', 'children': ['156', '159']},{'id': '156', 'type': 'attribute', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'view_decorators'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '159', 'type': 'argument_list', 'children': ['160']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'decorators'},{'id': '161', 'type': 'function_definition', 'children': ['162', '163', '169']},{'id': '162', 'type': 'function_name', 'children': [], 'value': '_view'},{'id': '163', 'type': 'parameters', 'children': ['164', '165', '167']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '165', 'type': 'list_splat_pattern', 'children': ['166']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '167', 'type': 'dictionary_splat_pattern', 'children': ['168']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '169', 'type': 'block', 'children': ['170', '188', '198', '221', '264', '292', '315', '386', '400', '424']},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '173', 'type': 'dictionary_comprehension', 'children': ['174', '179']},{'id': '174', 'type': 'pair', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '176', 'type': 'boolean_operator', 'children': ['177', '178'], 'value': 'or'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '178', 'type': 'string', 'children': [], 'value': "''"},{'id': '179', 'type': 'for_in_clause', 'children': ['180', '183']},{'id': '180', 'type': 'pattern_list', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '183', 'type': 'call', 'children': ['184', '187']},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '187', 'type': 'argument_list', 'children': []},{'id': '188', 'type': 'expression_statement', 'children': ['189']},{'id': '189', 'type': 'assignment', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '191', 'type': 'list_comprehension', 'children': ['192', '195']},{'id': '192', 'type': 'boolean_operator', 'children': ['193', '194'], 'value': 'or'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '194', 'type': 'string', 'children': [], 'value': "''"},{'id': '195', 'type': 'for_in_clause', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '198', 'type': 'if_statement', 'children': ['199', '203', '215']},{'id': '199', 'type': 'call', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'callable'},{'id': '201', 'type': 'argument_list', 'children': ['202']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '203', 'type': 'block', 'children': ['204']},{'id': '204', 'type': 'expression_statement', 'children': ['205']},{'id': '205', 'type': 'assignment', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'to_value'},{'id': '207', 'type': 'call', 'children': ['208', '209']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '209', 'type': 'argument_list', 'children': ['210', '211', '213']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '211', 'type': 'list_splat', 'children': ['212']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '213', 'type': 'dictionary_splat', 'children': ['214']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '215', 'type': 'else_clause', 'children': ['216']},{'id': '216', 'type': 'block', 'children': ['217']},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'assignment', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'to_value'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '221', 'type': 'if_statement', 'children': ['222', '235', '240']},{'id': '222', 'type': 'boolean_operator', 'children': ['223', '229'], 'value': 'or'},{'id': '223', 'type': 'call', 'children': ['224', '227']},{'id': '224', 'type': 'attribute', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'to_value'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '227', 'type': 'argument_list', 'children': ['228']},{'id': '228', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '229', 'type': 'call', 'children': ['230', '233']},{'id': '230', 'type': 'attribute', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'HTTP_RE'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '233', 'type': 'argument_list', 'children': ['234']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'to_value'},{'id': '235', 'type': 'block', 'children': ['236']},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'assignment', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'to_value'},{'id': '240', 'type': 'else_clause', 'children': ['241']},{'id': '241', 'type': 'block', 'children': ['242']},{'id': '242', 'type': 'try_statement', 'children': ['243', '257']},{'id': '243', 'type': 'block', 'children': ['244']},{'id': '244', 'type': 'expression_statement', 'children': ['245']},{'id': '245', 'type': 'assignment', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '247', 'type': 'call', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '249', 'type': 'argument_list', 'children': ['250', '251', '254']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'to_value'},{'id': '251', 'type': 'keyword_argument', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'to_args'},{'id': '254', 'type': 'keyword_argument', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'to_kwargs'},{'id': '257', 'type': 'except_clause', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'NoReverseMatch'},{'id': '259', 'type': 'block', 'children': ['260']},{'id': '260', 'type': 'expression_statement', 'children': ['261']},{'id': '261', 'type': 'assignment', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'to_value'},{'id': '264', 'type': 'if_statement', 'children': ['265', '280']},{'id': '265', 'type': 'boolean_operator', 'children': ['266', '274'], 'value': 'and'},{'id': '266', 'type': 'boolean_operator', 'children': ['267', '268'], 'value': 'and'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'prepend_locale'},{'id': '268', 'type': 'call', 'children': ['269', '272']},{'id': '269', 'type': 'attribute', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '272', 'type': 'argument_list', 'children': ['273']},{'id': '273', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '274', 'type': 'call', 'children': ['275', '278']},{'id': '275', 'type': 'attribute', 'children': ['276', '277']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '278', 'type': 'argument_list', 'children': ['279']},{'id': '279', 'type': 'string', 'children': [], 'value': "'locale'"},{'id': '280', 'type': 'block', 'children': ['281']},{'id': '281', 'type': 'expression_statement', 'children': ['282']},{'id': '282', 'type': 'assignment', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '284', 'type': 'binary_operator', 'children': ['285', '286'], 'value': '+'},{'id': '285', 'type': 'string', 'children': [], 'value': "'/{locale}'"},{'id': '286', 'type': 'call', 'children': ['287', '290']},{'id': '287', 'type': 'attribute', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'lstrip'},{'id': '290', 'type': 'argument_list', 'children': ['291']},{'id': '291', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '292', 'type': 'if_statement', 'children': ['293', '296']},{'id': '293', 'type': 'boolean_operator', 'children': ['294', '295'], 'value': 'or'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '296', 'type': 'block', 'children': ['297']},{'id': '297', 'type': 'expression_statement', 'children': ['298']},{'id': '298', 'type': 'assignment', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '300', 'type': 'call', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'strip_tags'},{'id': '302', 'type': 'argument_list', 'children': ['303']},{'id': '303', 'type': 'call', 'children': ['304', '310']},{'id': '304', 'type': 'attribute', 'children': ['305', '309']},{'id': '305', 'type': 'call', 'children': ['306', '307']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'force_text'},{'id': '307', 'type': 'argument_list', 'children': ['308']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '310', 'type': 'argument_list', 'children': ['311', '313']},{'id': '311', 'type': 'list_splat', 'children': ['312']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '313', 'type': 'dictionary_splat', 'children': ['314']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '315', 'type': 'if_statement', 'children': ['316', '317', '364', '380']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '317', 'type': 'block', 'children': ['318']},{'id': '318', 'type': 'if_statement', 'children': ['319', '320', '352']},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'merge_query'},{'id': '320', 'type': 'block', 'children': ['321', '335', '342']},{'id': '321', 'type': 'expression_statement', 'children': ['322']},{'id': '322', 'type': 'assignment', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'req_query'},{'id': '324', 'type': 'call', 'children': ['325', '326']},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'parse_qs'},{'id': '326', 'type': 'argument_list', 'children': ['327']},{'id': '327', 'type': 'call', 'children': ['328', '333']},{'id': '328', 'type': 'attribute', 'children': ['329', '332']},{'id': '329', 'type': 'attribute', 'children': ['330', '331']},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '331', 'type': 'identifier', 'children': [], 'value': 'META'},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '333', 'type': 'argument_list', 'children': ['334']},{'id': '334', 'type': 'string', 'children': [], 'value': "'QUERY_STRING'"},{'id': '335', 'type': 'expression_statement', 'children': ['336']},{'id': '336', 'type': 'call', 'children': ['337', '340']},{'id': '337', 'type': 'attribute', 'children': ['338', '339']},{'id': '338', 'type': 'identifier', 'children': [], 'value': 'req_query'},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '340', 'type': 'argument_list', 'children': ['341']},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '342', 'type': 'expression_statement', 'children': ['343']},{'id': '343', 'type': 'assignment', 'children': ['344', '345']},{'id': '344', 'type': 'identifier', 'children': [], 'value': 'querystring'},{'id': '345', 'type': 'call', 'children': ['346', '347']},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'urlencode'},{'id': '347', 'type': 'argument_list', 'children': ['348', '349']},{'id': '348', 'type': 'identifier', 'children': [], 'value': 'req_query'},{'id': '349', 'type': 'keyword_argument', 'children': ['350', '351']},{'id': '350', 'type': 'identifier', 'children': [], 'value': 'doseq'},{'id': '351', 'type': 'True', 'children': []},{'id': '352', 'type': 'else_clause', 'children': ['353']},{'id': '353', 'type': 'block', 'children': ['354']},{'id': '354', 'type': 'expression_statement', 'children': ['355']},{'id': '355', 'type': 'assignment', 'children': ['356', '357']},{'id': '356', 'type': 'identifier', 'children': [], 'value': 'querystring'},{'id': '357', 'type': 'call', 'children': ['358', '359']},{'id': '358', 'type': 'identifier', 'children': [], 'value': 'urlencode'},{'id': '359', 'type': 'argument_list', 'children': ['360', '361']},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '361', 'type': 'keyword_argument', 'children': ['362', '363']},{'id': '362', 'type': 'identifier', 'children': [], 'value': 'doseq'},{'id': '363', 'type': 'True', 'children': []},{'id': '364', 'type': 'elif_clause', 'children': ['365', '368']},{'id': '365', 'type': 'comparison_operator', 'children': ['366', '367'], 'value': 'is'},{'id': '366', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '367', 'type': 'None', 'children': []},{'id': '368', 'type': 'block', 'children': ['369']},{'id': '369', 'type': 'expression_statement', 'children': ['370']},{'id': '370', 'type': 'assignment', 'children': ['371', '372']},{'id': '371', 'type': 'identifier', 'children': [], 'value': 'querystring'},{'id': '372', 'type': 'call', 'children': ['373', '378']},{'id': '373', 'type': 'attribute', 'children': ['374', '377']},{'id': '374', 'type': 'attribute', 'children': ['375', '376']},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '376', 'type': 'identifier', 'children': [], 'value': 'META'},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '378', 'type': 'argument_list', 'children': ['379']},{'id': '379', 'type': 'string', 'children': [], 'value': "'QUERY_STRING'"},{'id': '380', 'type': 'else_clause', 'children': ['381']},{'id': '381', 'type': 'block', 'children': ['382']},{'id': '382', 'type': 'expression_statement', 'children': ['383']},{'id': '383', 'type': 'assignment', 'children': ['384', '385']},{'id': '384', 'type': 'identifier', 'children': [], 'value': 'querystring'},{'id': '385', 'type': 'string', 'children': [], 'value': "''"},{'id': '386', 'type': 'if_statement', 'children': ['387', '388']},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'querystring'},{'id': '388', 'type': 'block', 'children': ['389']},{'id': '389', 'type': 'expression_statement', 'children': ['390']},{'id': '390', 'type': 'assignment', 'children': ['391', '392']},{'id': '391', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '392', 'type': 'call', 'children': ['393', '396']},{'id': '393', 'type': 'attribute', 'children': ['394', '395']},{'id': '394', 'type': 'string', 'children': [], 'value': "'?'"},{'id': '395', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '396', 'type': 'argument_list', 'children': ['397']},{'id': '397', 'type': 'list', 'children': ['398', '399'], 'value': '[redirect_url, querystring]'},{'id': '398', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '399', 'type': 'identifier', 'children': [], 'value': 'querystring'},{'id': '400', 'type': 'if_statement', 'children': ['401', '402']},{'id': '401', 'type': 'identifier', 'children': [], 'value': 'anchor'},{'id': '402', 'type': 'block', 'children': ['403']},{'id': '403', 'type': 'expression_statement', 'children': ['404']},{'id': '404', 'type': 'assignment', 'children': ['405', '406', '414']},{'id': '405', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '406', 'type': 'ERROR', 'children': ['407', '408']},{'id': '407', 'type': 'identifier', 'children': [], 'value': 'if'},{'id': '408', 'type': 'call', 'children': ['409', '412']},{'id': '409', 'type': 'attribute', 'children': ['410', '411']},{'id': '410', 'type': 'identifier', 'children': [], 'value': 'PROTOCOL_RELATIVE_RE'},{'id': '411', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '412', 'type': 'argument_list', 'children': ['413']},{'id': '413', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '414', 'type': 'assignment', 'children': ['415', '416']},{'id': '415', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '416', 'type': 'binary_operator', 'children': ['417', '418'], 'value': '+'},{'id': '417', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '418', 'type': 'call', 'children': ['419', '422']},{'id': '419', 'type': 'attribute', 'children': ['420', '421']},{'id': '420', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '421', 'type': 'identifier', 'children': [], 'value': 'lstrip'},{'id': '422', 'type': 'argument_list', 'children': ['423']},{'id': '423', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '424', 'type': 'return_statement', 'children': ['425']},{'id': '425', 'type': 'call', 'children': ['426', '427']},{'id': '426', 'type': 'identifier', 'children': [], 'value': 'redirect_class'},{'id': '427', 'type': 'argument_list', 'children': ['428']},{'id': '428', 'type': 'identifier', 'children': [], 'value': 'redirect_url'},{'id': '429', 'type': 'try_statement', 'children': ['430', '445']},{'id': '430', 'type': 'block', 'children': ['431']},{'id': '431', 'type': 'for_statement', 'children': ['432', '433', '437']},{'id': '432', 'type': 'identifier', 'children': [], 'value': 'decorator'},{'id': '433', 'type': 'call', 'children': ['434', '435']},{'id': '434', 'type': 'identifier', 'children': [], 'value': 'reversed'},{'id': '435', 'type': 'argument_list', 'children': ['436']},{'id': '436', 'type': 'identifier', 'children': [], 'value': 'view_decorators'},{'id': '437', 'type': 'block', 'children': ['438']},{'id': '438', 'type': 'expression_statement', 'children': ['439']},{'id': '439', 'type': 'assignment', 'children': ['440', '441']},{'id': '440', 'type': 'identifier', 'children': [], 'value': '_view'},{'id': '441', 'type': 'call', 'children': ['442', '443']},{'id': '442', 'type': 'identifier', 'children': [], 'value': 'decorator'},{'id': '443', 'type': 'argument_list', 'children': ['444']},{'id': '444', 'type': 'identifier', 'children': [], 'value': '_view'},{'id': '445', 'type': 'except_clause', 'children': ['446', '447']},{'id': '446', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '447', 'type': 'block', 'children': ['448']},{'id': '448', 'type': 'expression_statement', 'children': ['449']},{'id': '449', 'type': 'call', 'children': ['450', '453']},{'id': '450', 'type': 'attribute', 'children': ['451', '452']},{'id': '451', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '452', 'type': 'identifier', 'children': [], 'value': 'exception'},{'id': '453', 'type': 'argument_list', 'children': ['454']},{'id': '454', 'type': 'concatenated_string', 'children': ['455', '456']},{'id': '455', 'type': 'string', 'children': [], 'value': "'decorators not iterable or does not contain '"},{'id': '456', 'type': 'string', 'children': [], 'value': "'callable items'"},{'id': '457', 'type': 'return_statement', 'children': ['458']},{'id': '458', 'type': 'call', 'children': ['459', '460']},{'id': '459', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '460', 'type': 'argument_list', 'children': ['461', '462', '463']},{'id': '461', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '462', 'type': 'identifier', 'children': [], 'value': '_view'},{'id': '463', 'type': 'keyword_argument', 'children': ['464', '465']},{'id': '464', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '465', 'type': 'identifier', 'children': [], 'value': 'name'} | def redirect(pattern, to, permanent=True, locale_prefix=True, anchor=None, name=None,
query=None, vary=None, cache_timeout=12, decorators=None, re_flags=None,
to_args=None, to_kwargs=None, prepend_locale=True, merge_query=False):
if permanent:
redirect_class = HttpResponsePermanentRedirect
else:
redirect_class = HttpResponseRedirect
if locale_prefix:
pattern = pattern.lstrip('^/')
pattern = LOCALE_RE + pattern
if re_flags:
pattern = '(?{})'.format(re_flags) + pattern
view_decorators = []
if cache_timeout is not None:
view_decorators.append(cache_control_expires(cache_timeout))
if vary:
if isinstance(vary, basestring):
vary = [vary]
view_decorators.append(vary_on_headers(*vary))
if decorators:
if callable(decorators):
view_decorators.append(decorators)
else:
view_decorators.extend(decorators)
def _view(request, *args, **kwargs):
kwargs = {k: v or '' for k, v in kwargs.items()}
args = [x or '' for x in args]
if callable(to):
to_value = to(request, *args, **kwargs)
else:
to_value = to
if to_value.startswith('/') or HTTP_RE.match(to_value):
redirect_url = to_value
else:
try:
redirect_url = reverse(to_value, args=to_args, kwargs=to_kwargs)
except NoReverseMatch:
redirect_url = to_value
if prepend_locale and redirect_url.startswith('/') and kwargs.get('locale'):
redirect_url = '/{locale}' + redirect_url.lstrip('/')
if args or kwargs:
redirect_url = strip_tags(force_text(redirect_url).format(*args, **kwargs))
if query:
if merge_query:
req_query = parse_qs(request.META.get('QUERY_STRING'))
req_query.update(query)
querystring = urlencode(req_query, doseq=True)
else:
querystring = urlencode(query, doseq=True)
elif query is None:
querystring = request.META.get('QUERY_STRING')
else:
querystring = ''
if querystring:
redirect_url = '?'.join([redirect_url, querystring])
if anchor:
redirect_url = '
if PROTOCOL_RELATIVE_RE.match(redirect_url):
redirect_url = '/' + redirect_url.lstrip('/')
return redirect_class(redirect_url)
try:
for decorator in reversed(view_decorators):
_view = decorator(_view)
except TypeError:
log.exception('decorators not iterable or does not contain '
'callable items')
return url(pattern, _view, name=name) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'FD'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '16', '40', '69', '105', '140', '255', '277']},{'id': '6', 'type': 'if_statement', 'children': ['7', '10']},{'id': '7', 'type': 'attribute', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'Verbose'},{'id': '10', 'type': 'block', 'children': ['11']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'string', 'children': [], 'value': '"Finite Difference Solution Technique"'},{'id': '16', 'type': 'try_statement', 'children': ['17', '22']},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'qs'},{'id': '22', 'type': 'except_clause', 'children': ['23']},{'id': '23', 'type': 'block', 'children': ['24', '36']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'qs'},{'id': '29', 'type': 'call', 'children': ['30', '35']},{'id': '30', 'type': 'attribute', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '35', 'type': 'argument_list', 'children': []},{'id': '36', 'type': 'delete_statement', 'children': ['37']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'arange'},{'id': '49', 'type': 'argument_list', 'children': ['50', '55', '66']},{'id': '50', 'type': 'binary_operator', 'children': ['51', '54'], 'value': '/'},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'dx'},{'id': '54', 'type': 'float', 'children': [], 'value': '2.'},{'id': '55', 'type': 'binary_operator', 'children': ['56', '59'], 'value': '*'},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'dx'},{'id': '59', 'type': 'subscript', 'children': ['60', '65']},{'id': '60', 'type': 'attribute', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'qs'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '65', 'type': 'integer', 'children': [], 'value': '0'},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'dx'},{'id': '69', 'type': 'if_statement', 'children': ['70', '75']},{'id': '70', 'type': 'comparison_operator', 'children': ['71', '74'], 'value': '=='},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'dimension'},{'id': '74', 'type': 'integer', 'children': [], 'value': '2'},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '81', 'type': 'call', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'arange'},{'id': '85', 'type': 'argument_list', 'children': ['86', '91', '102']},{'id': '86', 'type': 'binary_operator', 'children': ['87', '90'], 'value': '/'},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'dy'},{'id': '90', 'type': 'float', 'children': [], 'value': '2.'},{'id': '91', 'type': 'binary_operator', 'children': ['92', '95'], 'value': '*'},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'dy'},{'id': '95', 'type': 'subscript', 'children': ['96', '101']},{'id': '96', 'type': 'attribute', 'children': ['97', '100']},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'qs'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '101', 'type': 'integer', 'children': [], 'value': '1'},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'dy'},{'id': '105', 'type': 'try_statement', 'children': ['106', '111']},{'id': '106', 'type': 'block', 'children': ['107']},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'Solver'},{'id': '111', 'type': 'except_clause', 'children': ['112']},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'if_statement', 'children': ['114', '117', '131']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '117', 'type': 'block', 'children': ['118']},{'id': '118', 'type': 'expression_statement', 'children': ['119']},{'id': '119', 'type': 'assignment', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'Solver'},{'id': '123', 'type': 'call', 'children': ['124', '127']},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '127', 'type': 'argument_list', 'children': ['128', '129', '130']},{'id': '128', 'type': 'string', 'children': [], 'value': '"string"'},{'id': '129', 'type': 'string', 'children': [], 'value': '"numerical"'},{'id': '130', 'type': 'string', 'children': [], 'value': '"Solver"'},{'id': '131', 'type': 'else_clause', 'children': ['132']},{'id': '132', 'type': 'block', 'children': ['133']},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'call', 'children': ['135', '138']},{'id': '135', 'type': 'attribute', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '138', 'type': 'argument_list', 'children': ['139']},{'id': '139', 'type': 'string', 'children': [], 'value': '"No solver defined!"'},{'id': '140', 'type': 'if_statement', 'children': ['141', '144']},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '144', 'type': 'block', 'children': ['145', '158', '231']},{'id': '145', 'type': 'expression_statement', 'children': ['146']},{'id': '146', 'type': 'assignment', 'children': ['147', '150']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'iterative_ConvergenceTolerance'},{'id': '150', 'type': 'call', 'children': ['151', '154']},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '154', 'type': 'argument_list', 'children': ['155', '156', '157']},{'id': '155', 'type': 'string', 'children': [], 'value': '"float"'},{'id': '156', 'type': 'string', 'children': [], 'value': '"numerical"'},{'id': '157', 'type': 'string', 'children': [], 'value': '"ConvergenceTolerance"'},{'id': '158', 'type': 'try_statement', 'children': ['159', '209']},{'id': '159', 'type': 'block', 'children': ['160', '176']},{'id': '160', 'type': 'expression_statement', 'children': ['161']},{'id': '161', 'type': 'assignment', 'children': ['162', '165']},{'id': '162', 'type': 'attribute', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '165', 'type': 'call', 'children': ['166', '169']},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '169', 'type': 'argument_list', 'children': ['170', '171', '172', '173']},{'id': '170', 'type': 'string', 'children': [], 'value': '"float"'},{'id': '171', 'type': 'string', 'children': [], 'value': '"input"'},{'id': '172', 'type': 'string', 'children': [], 'value': '"ElasticThickness"'},{'id': '173', 'type': 'keyword_argument', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'optional'},{'id': '175', 'type': 'False', 'children': []},{'id': '176', 'type': 'if_statement', 'children': ['177', '182', '203']},{'id': '177', 'type': 'comparison_operator', 'children': ['178', '181'], 'value': 'is'},{'id': '178', 'type': 'attribute', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '181', 'type': 'None', 'children': []},{'id': '182', 'type': 'block', 'children': ['183', '197']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'assignment', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'Tepath'},{'id': '186', 'type': 'call', 'children': ['187', '190']},{'id': '187', 'type': 'attribute', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '190', 'type': 'argument_list', 'children': ['191', '192', '193', '194']},{'id': '191', 'type': 'string', 'children': [], 'value': '"string"'},{'id': '192', 'type': 'string', 'children': [], 'value': '"input"'},{'id': '193', 'type': 'string', 'children': [], 'value': '"ElasticThickness"'},{'id': '194', 'type': 'keyword_argument', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'optional'},{'id': '196', 'type': 'False', 'children': []},{'id': '197', 'type': 'expression_statement', 'children': ['198']},{'id': '198', 'type': 'assignment', 'children': ['199', '202']},{'id': '199', 'type': 'attribute', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'Tepath'},{'id': '203', 'type': 'else_clause', 'children': ['204']},{'id': '204', 'type': 'block', 'children': ['205']},{'id': '205', 'type': 'expression_statement', 'children': ['206']},{'id': '206', 'type': 'assignment', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'Tepath'},{'id': '208', 'type': 'None', 'children': []},{'id': '209', 'type': 'except_clause', 'children': ['210']},{'id': '210', 'type': 'block', 'children': ['211', '225']},{'id': '211', 'type': 'expression_statement', 'children': ['212']},{'id': '212', 'type': 'assignment', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'Tepath'},{'id': '214', 'type': 'call', 'children': ['215', '218']},{'id': '215', 'type': 'attribute', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '218', 'type': 'argument_list', 'children': ['219', '220', '221', '222']},{'id': '219', 'type': 'string', 'children': [], 'value': '"string"'},{'id': '220', 'type': 'string', 'children': [], 'value': '"input"'},{'id': '221', 'type': 'string', 'children': [], 'value': '"ElasticThickness"'},{'id': '222', 'type': 'keyword_argument', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'optional'},{'id': '224', 'type': 'False', 'children': []},{'id': '225', 'type': 'expression_statement', 'children': ['226']},{'id': '226', 'type': 'assignment', 'children': ['227', '230']},{'id': '227', 'type': 'attribute', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'Tepath'},{'id': '231', 'type': 'if_statement', 'children': ['232', '237']},{'id': '232', 'type': 'comparison_operator', 'children': ['233', '236'], 'value': 'is'},{'id': '233', 'type': 'attribute', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '236', 'type': 'None', 'children': []},{'id': '237', 'type': 'block', 'children': ['238']},{'id': '238', 'type': 'if_statement', 'children': ['239', '244', '246']},{'id': '239', 'type': 'comparison_operator', 'children': ['240', '243'], 'value': 'is'},{'id': '240', 'type': 'attribute', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'coeff_matrix'},{'id': '243', 'type': 'None', 'children': []},{'id': '244', 'type': 'block', 'children': ['245']},{'id': '245', 'type': 'pass_statement', 'children': []},{'id': '246', 'type': 'else_clause', 'children': ['247']},{'id': '247', 'type': 'block', 'children': ['248']},{'id': '248', 'type': 'expression_statement', 'children': ['249']},{'id': '249', 'type': 'call', 'children': ['250', '253']},{'id': '250', 'type': 'attribute', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '253', 'type': 'argument_list', 'children': ['254']},{'id': '254', 'type': 'string', 'children': [], 'value': '"No input elastic thickness or coefficient matrix supplied."'},{'id': '255', 'type': 'if_statement', 'children': ['256', '264', '271']},{'id': '256', 'type': 'comparison_operator', 'children': ['257', '263'], 'value': '=='},{'id': '257', 'type': 'call', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '259', 'type': 'argument_list', 'children': ['260']},{'id': '260', 'type': 'attribute', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '264', 'type': 'block', 'children': ['265']},{'id': '265', 'type': 'expression_statement', 'children': ['266']},{'id': '266', 'type': 'assignment', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'Tepath'},{'id': '268', 'type': 'attribute', 'children': ['269', '270']},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '271', 'type': 'else_clause', 'children': ['272']},{'id': '272', 'type': 'block', 'children': ['273']},{'id': '273', 'type': 'expression_statement', 'children': ['274']},{'id': '274', 'type': 'assignment', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'Tepath'},{'id': '276', 'type': 'None', 'children': []},{'id': '277', 'type': 'if_statement', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'Tepath'},{'id': '279', 'type': 'block', 'children': ['280', '296', '348']},{'id': '280', 'type': 'expression_statement', 'children': ['281']},{'id': '281', 'type': 'assignment', 'children': ['282', '285']},{'id': '282', 'type': 'attribute', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '285', 'type': 'call', 'children': ['286', '289']},{'id': '286', 'type': 'attribute', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'loadFile'},{'id': '289', 'type': 'argument_list', 'children': ['290', '293']},{'id': '290', 'type': 'attribute', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '293', 'type': 'keyword_argument', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'close_on_fail'},{'id': '295', 'type': 'False', 'children': []},{'id': '296', 'type': 'if_statement', 'children': ['297', '302']},{'id': '297', 'type': 'comparison_operator', 'children': ['298', '301'], 'value': 'is'},{'id': '298', 'type': 'attribute', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '301', 'type': 'None', 'children': []},{'id': '302', 'type': 'block', 'children': ['303', '308', '313', '318']},{'id': '303', 'type': 'expression_statement', 'children': ['304']},{'id': '304', 'type': 'call', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '306', 'type': 'argument_list', 'children': ['307']},{'id': '307', 'type': 'string', 'children': [], 'value': '"Requested Te file is provided but cannot be located."'},{'id': '308', 'type': 'expression_statement', 'children': ['309']},{'id': '309', 'type': 'call', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '311', 'type': 'argument_list', 'children': ['312']},{'id': '312', 'type': 'string', 'children': [], 'value': '"No scalar elastic thickness is provided in configuration file"'},{'id': '313', 'type': 'expression_statement', 'children': ['314']},{'id': '314', 'type': 'call', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '316', 'type': 'argument_list', 'children': ['317']},{'id': '317', 'type': 'string', 'children': [], 'value': '"(Typo in path to input Te grid?)"'},{'id': '318', 'type': 'if_statement', 'children': ['319', '324', '335']},{'id': '319', 'type': 'comparison_operator', 'children': ['320', '323'], 'value': 'is'},{'id': '320', 'type': 'attribute', 'children': ['321', '322']},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'coeff_matrix'},{'id': '323', 'type': 'None', 'children': []},{'id': '324', 'type': 'block', 'children': ['325', '330']},{'id': '325', 'type': 'expression_statement', 'children': ['326']},{'id': '326', 'type': 'call', 'children': ['327', '328']},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '328', 'type': 'argument_list', 'children': ['329']},{'id': '329', 'type': 'string', 'children': [], 'value': '"But a coefficient matrix has been found."'},{'id': '330', 'type': 'expression_statement', 'children': ['331']},{'id': '331', 'type': 'call', 'children': ['332', '333']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '333', 'type': 'argument_list', 'children': ['334']},{'id': '334', 'type': 'string', 'children': [], 'value': '"Calculations will be carried forward using it."'},{'id': '335', 'type': 'else_clause', 'children': ['336']},{'id': '336', 'type': 'block', 'children': ['337', '342']},{'id': '337', 'type': 'expression_statement', 'children': ['338']},{'id': '338', 'type': 'call', 'children': ['339', '340']},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '340', 'type': 'argument_list', 'children': ['341']},{'id': '341', 'type': 'string', 'children': [], 'value': '"Exiting."'},{'id': '342', 'type': 'expression_statement', 'children': ['343']},{'id': '343', 'type': 'call', 'children': ['344', '347']},{'id': '344', 'type': 'attribute', 'children': ['345', '346']},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '347', 'type': 'argument_list', 'children': []},{'id': '348', 'type': 'if_statement', 'children': ['349', '356']},{'id': '349', 'type': 'call', 'children': ['350', '355']},{'id': '350', 'type': 'attribute', 'children': ['351', '354']},{'id': '351', 'type': 'attribute', 'children': ['352', '353']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '354', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '355', 'type': 'argument_list', 'children': []},{'id': '356', 'type': 'block', 'children': ['357']},{'id': '357', 'type': 'expression_statement', 'children': ['358']},{'id': '358', 'type': 'call', 'children': ['359', '362']},{'id': '359', 'type': 'attribute', 'children': ['360', '361']},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'TeArraySizeCheck'},{'id': '362', 'type': 'argument_list', 'children': []} | def FD(self):
if self.Verbose:
print("Finite Difference Solution Technique")
try:
self.qs
except:
self.qs = self.q0.copy()
del self.q0
self.x = np.arange(self.dx/2., self.dx * self.qs.shape[0], self.dx)
if self.dimension == 2:
self.y = np.arange(self.dy/2., self.dy * self.qs.shape[1], self.dy)
try:
self.Solver
except:
if self.filename:
self.Solver = self.configGet("string", "numerical", "Solver")
else:
sys.exit("No solver defined!")
if self.filename:
self.iterative_ConvergenceTolerance = self.configGet("float", "numerical", "ConvergenceTolerance")
try:
self.Te = self.configGet("float", "input", "ElasticThickness", optional=False)
if self.Te is None:
Tepath = self.configGet("string", "input", "ElasticThickness", optional=False)
self.Te = Tepath
else:
Tepath = None
except:
Tepath = self.configGet("string", "input", "ElasticThickness", optional=False)
self.Te = Tepath
if self.Te is None:
if self.coeff_matrix is not None:
pass
else:
sys.exit("No input elastic thickness or coefficient matrix supplied.")
if type(self.Te) == str:
Tepath = self.Te
else:
Tepath = None
if Tepath:
self.Te = self.loadFile(self.Te, close_on_fail = False)
if self.Te is None:
print("Requested Te file is provided but cannot be located.")
print("No scalar elastic thickness is provided in configuration file")
print("(Typo in path to input Te grid?)")
if self.coeff_matrix is not None:
print("But a coefficient matrix has been found.")
print("Calculations will be carried forward using it.")
else:
print("Exiting.")
sys.exit()
if self.Te.any():
self.TeArraySizeCheck() |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'SAS_NG'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '69', '224', '232', '247', '251', '298', '321', '452']},{'id': '6', 'type': 'if_statement', 'children': ['7', '10']},{'id': '7', 'type': 'attribute', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '10', 'type': 'block', 'children': ['11', '24', '40', '56']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'Te'},{'id': '16', 'type': 'call', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '20', 'type': 'argument_list', 'children': ['21', '22', '23']},{'id': '21', 'type': 'string', 'children': [], 'value': '"float"'},{'id': '22', 'type': 'string', 'children': [], 'value': '"input"'},{'id': '23', 'type': 'string', 'children': [], 'value': '"ElasticThickness"'},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'latlon'},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '33', 'type': 'argument_list', 'children': ['34', '35', '36', '37']},{'id': '34', 'type': 'string', 'children': [], 'value': '"string"'},{'id': '35', 'type': 'string', 'children': [], 'value': '"numerical2D"'},{'id': '36', 'type': 'string', 'children': [], 'value': '"latlon"'},{'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'optional'},{'id': '39', 'type': 'True', 'children': []},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'PlanetaryRadius'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '49', 'type': 'argument_list', 'children': ['50', '51', '52', '53']},{'id': '50', 'type': 'string', 'children': [], 'value': '"float"'},{'id': '51', 'type': 'string', 'children': [], 'value': '"numerical2D"'},{'id': '52', 'type': 'string', 'children': [], 'value': '"PlanetaryRadius"'},{'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'optional'},{'id': '55', 'type': 'True', 'children': []},{'id': '56', 'type': 'if_statement', 'children': ['57', '62']},{'id': '57', 'type': 'comparison_operator', 'children': ['58', '61'], 'value': '=='},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'dimension'},{'id': '61', 'type': 'integer', 'children': [], 'value': '2'},{'id': '62', 'type': 'block', 'children': ['63']},{'id': '63', 'type': 'import_from_statement', 'children': ['64', '67']},{'id': '64', 'type': 'dotted_name', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'special'},{'id': '67', 'type': 'dotted_name', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'kei'},{'id': '69', 'type': 'if_statement', 'children': ['70', '75', '141']},{'id': '70', 'type': 'comparison_operator', 'children': ['71', '74'], 'value': '=='},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'dimension'},{'id': '74', 'type': 'integer', 'children': [], 'value': '1'},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'try_statement', 'children': ['77', '86']},{'id': '77', 'type': 'block', 'children': ['78', '82']},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '86', 'type': 'except_clause', 'children': ['87']},{'id': '87', 'type': 'block', 'children': ['88']},{'id': '88', 'type': 'if_statement', 'children': ['89', '98', '123']},{'id': '89', 'type': 'comparison_operator', 'children': ['90', '97'], 'value': '=='},{'id': '90', 'type': 'subscript', 'children': ['91', '96']},{'id': '91', 'type': 'attribute', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '96', 'type': 'integer', 'children': [], 'value': '1'},{'id': '97', 'type': 'integer', 'children': [], 'value': '2'},{'id': '98', 'type': 'block', 'children': ['99', '111']},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '104']},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '104', 'type': 'subscript', 'children': ['105', '108', '110']},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '108', 'type': 'slice', 'children': ['109']},{'id': '109', 'type': 'colon', 'children': []},{'id': '110', 'type': 'integer', 'children': [], 'value': '0'},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'assignment', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '116', 'type': 'subscript', 'children': ['117', '120', '122']},{'id': '117', 'type': 'attribute', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '120', 'type': 'slice', 'children': ['121']},{'id': '121', 'type': 'colon', 'children': []},{'id': '122', 'type': 'integer', 'children': [], 'value': '1'},{'id': '123', 'type': 'else_clause', 'children': ['124']},{'id': '124', 'type': 'block', 'children': ['125']},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'binary_operator', 'children': ['132', '133'], 'value': '+'},{'id': '132', 'type': 'string', 'children': [], 'value': '"For 1D (ungridded) SAS_NG configuration file, need [x,w] array. Your dimensions are: "'},{'id': '133', 'type': 'call', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'attribute', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '141', 'type': 'else_clause', 'children': ['142']},{'id': '142', 'type': 'block', 'children': ['143']},{'id': '143', 'type': 'try_statement', 'children': ['144', '157']},{'id': '144', 'type': 'block', 'children': ['145', '149', '153']},{'id': '145', 'type': 'expression_statement', 'children': ['146']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '153', 'type': 'expression_statement', 'children': ['154']},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '157', 'type': 'except_clause', 'children': ['158']},{'id': '158', 'type': 'block', 'children': ['159']},{'id': '159', 'type': 'if_statement', 'children': ['160', '169', '206']},{'id': '160', 'type': 'comparison_operator', 'children': ['161', '168'], 'value': '=='},{'id': '161', 'type': 'subscript', 'children': ['162', '167']},{'id': '162', 'type': 'attribute', 'children': ['163', '166']},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '167', 'type': 'integer', 'children': [], 'value': '1'},{'id': '168', 'type': 'integer', 'children': [], 'value': '3'},{'id': '169', 'type': 'block', 'children': ['170', '182', '194']},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '175', 'type': 'subscript', 'children': ['176', '179', '181']},{'id': '176', 'type': 'attribute', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '179', 'type': 'slice', 'children': ['180']},{'id': '180', 'type': 'colon', 'children': []},{'id': '181', 'type': 'integer', 'children': [], 'value': '0'},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '187']},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '187', 'type': 'subscript', 'children': ['188', '191', '193']},{'id': '188', 'type': 'attribute', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '191', 'type': 'slice', 'children': ['192']},{'id': '192', 'type': 'colon', 'children': []},{'id': '193', 'type': 'integer', 'children': [], 'value': '1'},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'assignment', 'children': ['196', '199']},{'id': '196', 'type': 'attribute', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '199', 'type': 'subscript', 'children': ['200', '203', '205']},{'id': '200', 'type': 'attribute', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '203', 'type': 'slice', 'children': ['204']},{'id': '204', 'type': 'colon', 'children': []},{'id': '205', 'type': 'integer', 'children': [], 'value': '2'},{'id': '206', 'type': 'else_clause', 'children': ['207']},{'id': '207', 'type': 'block', 'children': ['208']},{'id': '208', 'type': 'expression_statement', 'children': ['209']},{'id': '209', 'type': 'call', 'children': ['210', '213']},{'id': '210', 'type': 'attribute', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '213', 'type': 'argument_list', 'children': ['214']},{'id': '214', 'type': 'binary_operator', 'children': ['215', '216'], 'value': '+'},{'id': '215', 'type': 'string', 'children': [], 'value': '"For 2D (ungridded) SAS_NG configuration file, need [x,y,w] array. Your dimensions are: "'},{'id': '216', 'type': 'call', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '218', 'type': 'argument_list', 'children': ['219']},{'id': '219', 'type': 'attribute', 'children': ['220', '223']},{'id': '220', 'type': 'attribute', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '224', 'type': 'expression_statement', 'children': ['225']},{'id': '225', 'type': 'assignment', 'children': ['226', '229']},{'id': '226', 'type': 'attribute', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '229', 'type': 'attribute', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '232', 'type': 'if_statement', 'children': ['233', '238']},{'id': '233', 'type': 'comparison_operator', 'children': ['234', '237'], 'value': '=='},{'id': '234', 'type': 'attribute', 'children': ['235', '236']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'dimension'},{'id': '237', 'type': 'integer', 'children': [], 'value': '2'},{'id': '238', 'type': 'block', 'children': ['239']},{'id': '239', 'type': 'expression_statement', 'children': ['240']},{'id': '240', 'type': 'assignment', 'children': ['241', '244']},{'id': '241', 'type': 'attribute', 'children': ['242', '243']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '244', 'type': 'attribute', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '247', 'type': 'delete_statement', 'children': ['248']},{'id': '248', 'type': 'attribute', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'q0'},{'id': '251', 'type': 'try_statement', 'children': ['252', '257']},{'id': '252', 'type': 'block', 'children': ['253']},{'id': '253', 'type': 'expression_statement', 'children': ['254']},{'id': '254', 'type': 'attribute', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '257', 'type': 'except_clause', 'children': ['258']},{'id': '258', 'type': 'block', 'children': ['259']},{'id': '259', 'type': 'try_statement', 'children': ['260', '290']},{'id': '260', 'type': 'block', 'children': ['261', '277']},{'id': '261', 'type': 'expression_statement', 'children': ['262']},{'id': '262', 'type': 'assignment', 'children': ['263', '266']},{'id': '263', 'type': 'attribute', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '266', 'type': 'call', 'children': ['267', '270']},{'id': '267', 'type': 'attribute', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '270', 'type': 'argument_list', 'children': ['271', '272', '273', '274']},{'id': '271', 'type': 'string', 'children': [], 'value': "'string'"},{'id': '272', 'type': 'string', 'children': [], 'value': '"input"'},{'id': '273', 'type': 'string', 'children': [], 'value': '"xw"'},{'id': '274', 'type': 'keyword_argument', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'optional'},{'id': '276', 'type': 'True', 'children': []},{'id': '277', 'type': 'if_statement', 'children': ['278', '283']},{'id': '278', 'type': 'comparison_operator', 'children': ['279', '282'], 'value': '=='},{'id': '279', 'type': 'attribute', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '282', 'type': 'string', 'children': [], 'value': "''"},{'id': '283', 'type': 'block', 'children': ['284']},{'id': '284', 'type': 'expression_statement', 'children': ['285']},{'id': '285', 'type': 'assignment', 'children': ['286', '289']},{'id': '286', 'type': 'attribute', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '289', 'type': 'None', 'children': []},{'id': '290', 'type': 'except_clause', 'children': ['291']},{'id': '291', 'type': 'block', 'children': ['292']},{'id': '292', 'type': 'expression_statement', 'children': ['293']},{'id': '293', 'type': 'assignment', 'children': ['294', '297']},{'id': '294', 'type': 'attribute', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '297', 'type': 'None', 'children': []},{'id': '298', 'type': 'if_statement', 'children': ['299', '307']},{'id': '299', 'type': 'comparison_operator', 'children': ['300', '306'], 'value': '=='},{'id': '300', 'type': 'call', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '302', 'type': 'argument_list', 'children': ['303']},{'id': '303', 'type': 'attribute', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '307', 'type': 'block', 'children': ['308']},{'id': '308', 'type': 'expression_statement', 'children': ['309']},{'id': '309', 'type': 'assignment', 'children': ['310', '313']},{'id': '310', 'type': 'attribute', 'children': ['311', '312']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '313', 'type': 'call', 'children': ['314', '317']},{'id': '314', 'type': 'attribute', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'loadFile'},{'id': '317', 'type': 'argument_list', 'children': ['318']},{'id': '318', 'type': 'attribute', 'children': ['319', '320']},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '321', 'type': 'if_statement', 'children': ['322', '327']},{'id': '322', 'type': 'comparison_operator', 'children': ['323', '326'], 'value': '=='},{'id': '323', 'type': 'attribute', 'children': ['324', '325']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'dimension'},{'id': '326', 'type': 'integer', 'children': [], 'value': '2'},{'id': '327', 'type': 'block', 'children': ['328', '375', '410']},{'id': '328', 'type': 'try_statement', 'children': ['329', '334']},{'id': '329', 'type': 'block', 'children': ['330']},{'id': '330', 'type': 'expression_statement', 'children': ['331']},{'id': '331', 'type': 'attribute', 'children': ['332', '333']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '333', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '334', 'type': 'except_clause', 'children': ['335']},{'id': '335', 'type': 'block', 'children': ['336']},{'id': '336', 'type': 'try_statement', 'children': ['337', '367']},{'id': '337', 'type': 'block', 'children': ['338', '354']},{'id': '338', 'type': 'expression_statement', 'children': ['339']},{'id': '339', 'type': 'assignment', 'children': ['340', '343']},{'id': '340', 'type': 'attribute', 'children': ['341', '342']},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '342', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '343', 'type': 'call', 'children': ['344', '347']},{'id': '344', 'type': 'attribute', 'children': ['345', '346']},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'configGet'},{'id': '347', 'type': 'argument_list', 'children': ['348', '349', '350', '351']},{'id': '348', 'type': 'string', 'children': [], 'value': "'string'"},{'id': '349', 'type': 'string', 'children': [], 'value': '"input"'},{'id': '350', 'type': 'string', 'children': [], 'value': '"yw"'},{'id': '351', 'type': 'keyword_argument', 'children': ['352', '353']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'optional'},{'id': '353', 'type': 'True', 'children': []},{'id': '354', 'type': 'if_statement', 'children': ['355', '360']},{'id': '355', 'type': 'comparison_operator', 'children': ['356', '359'], 'value': '=='},{'id': '356', 'type': 'attribute', 'children': ['357', '358']},{'id': '357', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '358', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '359', 'type': 'string', 'children': [], 'value': "''"},{'id': '360', 'type': 'block', 'children': ['361']},{'id': '361', 'type': 'expression_statement', 'children': ['362']},{'id': '362', 'type': 'assignment', 'children': ['363', '366']},{'id': '363', 'type': 'attribute', 'children': ['364', '365']},{'id': '364', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '365', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '366', 'type': 'None', 'children': []},{'id': '367', 'type': 'except_clause', 'children': ['368']},{'id': '368', 'type': 'block', 'children': ['369']},{'id': '369', 'type': 'expression_statement', 'children': ['370']},{'id': '370', 'type': 'assignment', 'children': ['371', '374']},{'id': '371', 'type': 'attribute', 'children': ['372', '373']},{'id': '372', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '373', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '374', 'type': 'None', 'children': []},{'id': '375', 'type': 'if_statement', 'children': ['376', '402']},{'id': '376', 'type': 'boolean_operator', 'children': ['377', '389', '390'], 'value': 'or'},{'id': '377', 'type': '()', 'children': ['378']},{'id': '378', 'type': 'boolean_operator', 'children': ['379', '384'], 'value': 'and'},{'id': '379', 'type': 'comparison_operator', 'children': ['380', '383'], 'value': 'is'},{'id': '380', 'type': 'attribute', 'children': ['381', '382']},{'id': '381', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '383', 'type': 'None', 'children': []},{'id': '384', 'type': 'comparison_operator', 'children': ['385', '388'], 'value': 'is'},{'id': '385', 'type': 'attribute', 'children': ['386', '387']},{'id': '386', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '388', 'type': 'None', 'children': []},{'id': '389', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '390', 'type': '()', 'children': ['391']},{'id': '391', 'type': 'boolean_operator', 'children': ['392', '397'], 'value': 'and'},{'id': '392', 'type': 'comparison_operator', 'children': ['393', '396'], 'value': 'is'},{'id': '393', 'type': 'attribute', 'children': ['394', '395']},{'id': '394', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '395', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '396', 'type': 'None', 'children': []},{'id': '397', 'type': 'comparison_operator', 'children': ['398', '401'], 'value': 'is'},{'id': '398', 'type': 'attribute', 'children': ['399', '400']},{'id': '399', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '400', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '401', 'type': 'None', 'children': []},{'id': '402', 'type': 'block', 'children': ['403']},{'id': '403', 'type': 'expression_statement', 'children': ['404']},{'id': '404', 'type': 'call', 'children': ['405', '408']},{'id': '405', 'type': 'attribute', 'children': ['406', '407']},{'id': '406', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '407', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '408', 'type': 'argument_list', 'children': ['409']},{'id': '409', 'type': 'string', 'children': [], 'value': '"SAS_NG output at specified points requires both xw and yw to be defined"'},{'id': '410', 'type': 'if_statement', 'children': ['411', '419', '433']},{'id': '411', 'type': 'comparison_operator', 'children': ['412', '418'], 'value': '=='},{'id': '412', 'type': 'call', 'children': ['413', '414']},{'id': '413', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '414', 'type': 'argument_list', 'children': ['415']},{'id': '415', 'type': 'attribute', 'children': ['416', '417']},{'id': '416', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '417', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '418', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '419', 'type': 'block', 'children': ['420']},{'id': '420', 'type': 'expression_statement', 'children': ['421']},{'id': '421', 'type': 'assignment', 'children': ['422', '425']},{'id': '422', 'type': 'attribute', 'children': ['423', '424']},{'id': '423', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '424', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '425', 'type': 'call', 'children': ['426', '429']},{'id': '426', 'type': 'attribute', 'children': ['427', '428']},{'id': '427', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '428', 'type': 'identifier', 'children': [], 'value': 'loadFile'},{'id': '429', 'type': 'argument_list', 'children': ['430']},{'id': '430', 'type': 'attribute', 'children': ['431', '432']},{'id': '431', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '432', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '433', 'type': 'elif_clause', 'children': ['434', '439']},{'id': '434', 'type': 'comparison_operator', 'children': ['435', '438'], 'value': 'is'},{'id': '435', 'type': 'attribute', 'children': ['436', '437']},{'id': '436', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '437', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '438', 'type': 'None', 'children': []},{'id': '439', 'type': 'block', 'children': ['440']},{'id': '440', 'type': 'expression_statement', 'children': ['441']},{'id': '441', 'type': 'assignment', 'children': ['442', '445']},{'id': '442', 'type': 'attribute', 'children': ['443', '444']},{'id': '443', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '444', 'type': 'identifier', 'children': [], 'value': 'yw'},{'id': '445', 'type': 'call', 'children': ['446', '451']},{'id': '446', 'type': 'attribute', 'children': ['447', '450']},{'id': '447', 'type': 'attribute', 'children': ['448', '449']},{'id': '448', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '449', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '450', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '451', 'type': 'argument_list', 'children': []},{'id': '452', 'type': 'if_statement', 'children': ['453', '458']},{'id': '453', 'type': 'comparison_operator', 'children': ['454', '457'], 'value': 'is'},{'id': '454', 'type': 'attribute', 'children': ['455', '456']},{'id': '455', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '456', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '457', 'type': 'None', 'children': []},{'id': '458', 'type': 'block', 'children': ['459']},{'id': '459', 'type': 'expression_statement', 'children': ['460']},{'id': '460', 'type': 'assignment', 'children': ['461', '464']},{'id': '461', 'type': 'attribute', 'children': ['462', '463']},{'id': '462', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '463', 'type': 'identifier', 'children': [], 'value': 'xw'},{'id': '464', 'type': 'call', 'children': ['465', '470']},{'id': '465', 'type': 'attribute', 'children': ['466', '469']},{'id': '466', 'type': 'attribute', 'children': ['467', '468']},{'id': '467', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '468', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '469', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '470', 'type': 'argument_list', 'children': []} | def SAS_NG(self):
if self.filename:
self.Te = self.configGet("float", "input", "ElasticThickness")
self.latlon = self.configGet("string", "numerical2D", "latlon", optional=True)
self.PlanetaryRadius = self.configGet("float", "numerical2D", "PlanetaryRadius", optional=True)
if self.dimension == 2:
from scipy.special import kei
if self.dimension == 1:
try:
self.x
self.q
except:
if self.q0.shape[1] == 2:
self.x = self.q0[:,0]
self.q = self.q0[:,1]
else:
sys.exit("For 1D (ungridded) SAS_NG configuration file, need [x,w] array. Your dimensions are: "+str(self.q0.shape))
else:
try:
self.x
self.u
self.q
except:
if self.q0.shape[1] == 3:
self.x = self.q0[:,0]
self.y = self.q0[:,1]
self.q = self.q0[:,2]
else:
sys.exit("For 2D (ungridded) SAS_NG configuration file, need [x,y,w] array. Your dimensions are: "+str(self.q0.shape))
self.x = self.x
if self.dimension == 2:
self.y = self.y
del self.q0
try:
self.xw
except:
try:
self.xw = self.configGet('string', "input", "xw", optional=True)
if self.xw == '':
self.xw = None
except:
self.xw = None
if type(self.xw) == str:
self.xw = self.loadFile(self.xw)
if self.dimension == 2:
try:
self.yw
except:
try:
self.yw = self.configGet('string', "input", "yw", optional=True )
if self.yw == '':
self.yw = None
except:
self.yw = None
if (self.xw is not None and self.yw is None) \
or (self.xw is None and self.yw is not None):
sys.exit("SAS_NG output at specified points requires both xw and yw to be defined")
if type(self.yw) == str:
self.yw = self.loadFile(self.yw)
elif self.yw is None:
self.yw = self.y.copy()
if self.xw is None:
self.xw = self.x.copy() |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_c3_mro'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '48', '58', '71', '75', '88', '121', '132', '146', '160', '174']},{'id': '9', 'type': 'for_statement', 'children': ['10', '13', '22', '42']},{'id': '10', 'type': 'pattern_list', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'reversed'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '21', 'type': 'identifier', 'children': [], 'value': '__bases__'},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'if_statement', 'children': ['24', '29']},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '26', 'type': 'argument_list', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '28', 'type': 'string', 'children': [], 'value': "'__abstractmethods__'"},{'id': '29', 'type': 'block', 'children': ['30', '41']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'boundary'},{'id': '33', 'type': 'binary_operator', 'children': ['34', '40'], 'value': '-'},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '39', 'type': 'identifier', 'children': [], 'value': '__bases__'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '41', 'type': 'break_statement', 'children': []},{'id': '42', 'type': 'else_clause', 'children': ['43']},{'id': '43', 'type': 'block', 'children': ['44']},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'boundary'},{'id': '47', 'type': 'integer', 'children': [], 'value': '0'},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '51', 'type': 'conditional_expression', 'children': ['52', '56', '57'], 'value': 'if'},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '57', 'type': 'list', 'children': [], 'value': '[]'},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'explicit_bases'},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'subscript', 'children': ['65', '68']},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '67', 'type': 'identifier', 'children': [], 'value': '__bases__'},{'id': '68', 'type': 'slice', 'children': ['69', '70']},{'id': '69', 'type': 'colon', 'children': []},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'boundary'},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'assignment', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'abstract_bases'},{'id': '74', 'type': 'list', 'children': [], 'value': '[]'},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'other_bases'},{'id': '78', 'type': 'call', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'subscript', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '84', 'type': 'identifier', 'children': [], 'value': '__bases__'},{'id': '85', 'type': 'slice', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'boundary'},{'id': '87', 'type': 'colon', 'children': []},{'id': '88', 'type': 'for_statement', 'children': ['89', '90', '91']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '91', 'type': 'block', 'children': ['92']},{'id': '92', 'type': 'if_statement', 'children': ['93', '113']},{'id': '93', 'type': 'boolean_operator', 'children': ['94', '99'], 'value': 'and'},{'id': '94', 'type': 'call', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'issubclass'},{'id': '96', 'type': 'argument_list', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '99', 'type': 'not_operator', 'children': ['100']},{'id': '100', 'type': 'call', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '102', 'type': 'generator_expression', 'children': ['103', '108']},{'id': '103', 'type': 'call', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'issubclass'},{'id': '105', 'type': 'argument_list', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '108', 'type': 'for_in_clause', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '112', 'type': 'identifier', 'children': [], 'value': '__bases__'},{'id': '113', 'type': 'block', 'children': ['114']},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'abstract_bases'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '121', 'type': 'for_statement', 'children': ['122', '123', '124']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'abstract_bases'},{'id': '124', 'type': 'block', 'children': ['125']},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'explicit_c3_mros'},{'id': '135', 'type': 'list_comprehension', 'children': ['136', '143']},{'id': '136', 'type': 'call', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': '_c3_mro'},{'id': '138', 'type': 'argument_list', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '140', 'type': 'keyword_argument', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '143', 'type': 'for_in_clause', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'explicit_bases'},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'assignment', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'abstract_c3_mros'},{'id': '149', 'type': 'list_comprehension', 'children': ['150', '157']},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': '_c3_mro'},{'id': '152', 'type': 'argument_list', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '154', 'type': 'keyword_argument', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '157', 'type': 'for_in_clause', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'abstract_bases'},{'id': '160', 'type': 'expression_statement', 'children': ['161']},{'id': '161', 'type': 'assignment', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'other_c3_mros'},{'id': '163', 'type': 'list_comprehension', 'children': ['164', '171']},{'id': '164', 'type': 'call', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': '_c3_mro'},{'id': '166', 'type': 'argument_list', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '168', 'type': 'keyword_argument', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'abcs'},{'id': '171', 'type': 'for_in_clause', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'other_bases'},{'id': '174', 'type': 'return_statement', 'children': ['175']},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': '_c3_merge'},{'id': '177', 'type': 'argument_list', 'children': ['178']},{'id': '178', 'type': 'binary_operator', 'children': ['179', '194'], 'value': '+'},{'id': '179', 'type': 'binary_operator', 'children': ['180', '192'], 'value': '+'},{'id': '180', 'type': 'binary_operator', 'children': ['181', '190'], 'value': '+'},{'id': '181', 'type': 'binary_operator', 'children': ['182', '189'], 'value': '+'},{'id': '182', 'type': 'binary_operator', 'children': ['183', '188'], 'value': '+'},{'id': '183', 'type': 'binary_operator', 'children': ['184', '187'], 'value': '+'},{'id': '184', 'type': 'list', 'children': ['185'], 'value': '[[cls]]'},{'id': '185', 'type': 'list', 'children': ['186'], 'value': '[cls]'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'explicit_c3_mros'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'abstract_c3_mros'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'other_c3_mros'},{'id': '190', 'type': 'list', 'children': ['191'], 'value': '[explicit_bases]'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'explicit_bases'},{'id': '192', 'type': 'list', 'children': ['193'], 'value': '[abstract_bases]'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'abstract_bases'},{'id': '194', 'type': 'list', 'children': ['195'], 'value': '[\n other_bases]'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'other_bases'} | def _c3_mro(cls, abcs=None):
for i, base in enumerate(reversed(cls.__bases__)):
if hasattr(base, '__abstractmethods__'):
boundary = len(cls.__bases__) - i
break
else:
boundary = 0
abcs = list(abcs) if abcs else []
explicit_bases = list(cls.__bases__[:boundary])
abstract_bases = []
other_bases = list(cls.__bases__[boundary:])
for base in abcs:
if issubclass(cls, base) and not any(issubclass(b, base) for b in cls.__bases__):
abstract_bases.append(base)
for base in abstract_bases:
abcs.remove(base)
explicit_c3_mros = [_c3_mro(base, abcs=abcs) for base in explicit_bases]
abstract_c3_mros = [_c3_mro(base, abcs=abcs) for base in abstract_bases]
other_c3_mros = [_c3_mro(base, abcs=abcs) for base in other_bases]
return _c3_merge(
[[cls]] + explicit_c3_mros + abstract_c3_mros + other_c3_mros + [explicit_bases] + [abstract_bases] + [
other_bases]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'singledispatch'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '5', 'type': 'block', 'children': ['6', '10', '16', '21', '27', '102', '159', '182', '188', '194', '200', '209', '217', '223']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'registry'},{'id': '9', 'type': 'dictionary', 'children': []},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'dispatch_cache'},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'WeakKeyDictionary'},{'id': '15', 'type': 'argument_list', 'children': []},{'id': '16', 'type': 'function_definition', 'children': ['17', '18', '19']},{'id': '17', 'type': 'function_name', 'children': [], 'value': 'ns'},{'id': '18', 'type': 'parameters', 'children': []},{'id': '19', 'type': 'block', 'children': ['20']},{'id': '20', 'type': 'pass_statement', 'children': []},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '26']},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'ns'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'cache_token'},{'id': '26', 'type': 'None', 'children': []},{'id': '27', 'type': 'function_definition', 'children': ['28', '29', '31']},{'id': '28', 'type': 'function_name', 'children': [], 'value': 'dispatch'},{'id': '29', 'type': 'parameters', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '31', 'type': 'block', 'children': ['32', '64', '100']},{'id': '32', 'type': 'if_statement', 'children': ['33', '38']},{'id': '33', 'type': 'comparison_operator', 'children': ['34', '37'], 'value': 'is'},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'ns'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'cache_token'},{'id': '37', 'type': 'None', 'children': []},{'id': '38', 'type': 'block', 'children': ['39', '45']},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'current_token'},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'get_cache_token'},{'id': '44', 'type': 'argument_list', 'children': []},{'id': '45', 'type': 'if_statement', 'children': ['46', '51']},{'id': '46', 'type': 'comparison_operator', 'children': ['47', '50'], 'value': '!='},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'ns'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'cache_token'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'current_token'},{'id': '51', 'type': 'block', 'children': ['52', '58']},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'dispatch_cache'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'clear'},{'id': '57', 'type': 'argument_list', 'children': []},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'ns'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'cache_token'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'current_token'},{'id': '64', 'type': 'try_statement', 'children': ['65', '72']},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'impl'},{'id': '69', 'type': 'subscript', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'dispatch_cache'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '72', 'type': 'except_clause', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '74', 'type': 'block', 'children': ['75', '94']},{'id': '75', 'type': 'try_statement', 'children': ['76', '83']},{'id': '76', 'type': 'block', 'children': ['77']},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'impl'},{'id': '80', 'type': 'subscript', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'registry'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '83', 'type': 'except_clause', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '85', 'type': 'block', 'children': ['86']},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'impl'},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': '_find_impl'},{'id': '91', 'type': 'argument_list', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'registry'},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '99']},{'id': '96', 'type': 'subscript', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'dispatch_cache'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'impl'},{'id': '100', 'type': 'return_statement', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'impl'},{'id': '102', 'type': 'function_definition', 'children': ['103', '104', '109']},{'id': '103', 'type': 'function_name', 'children': [], 'value': 'register'},{'id': '104', 'type': 'parameters', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '106', 'type': 'default_parameter', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '108', 'type': 'None', 'children': []},{'id': '109', 'type': 'block', 'children': ['110', '124', '130', '151', '157']},{'id': '110', 'type': 'if_statement', 'children': ['111', '114']},{'id': '111', 'type': 'comparison_operator', 'children': ['112', '113'], 'value': 'is'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '113', 'type': 'None', 'children': []},{'id': '114', 'type': 'block', 'children': ['115']},{'id': '115', 'type': 'return_statement', 'children': ['116']},{'id': '116', 'type': 'lambda', 'children': ['117', '119']},{'id': '117', 'type': 'lambda_parameters', 'children': ['118']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '119', 'type': 'call', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '121', 'type': 'argument_list', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'assignment', 'children': ['126', '129']},{'id': '126', 'type': 'subscript', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'registry'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '130', 'type': 'if_statement', 'children': ['131', '142']},{'id': '131', 'type': 'boolean_operator', 'children': ['132', '137'], 'value': 'and'},{'id': '132', 'type': 'comparison_operator', 'children': ['133', '136'], 'value': 'is'},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'ns'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'cache_token'},{'id': '136', 'type': 'None', 'children': []},{'id': '137', 'type': 'call', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '139', 'type': 'argument_list', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '141', 'type': 'string', 'children': [], 'value': "'__abstractmethods__'"},{'id': '142', 'type': 'block', 'children': ['143']},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'assignment', 'children': ['145', '148']},{'id': '145', 'type': 'attribute', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'ns'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'cache_token'},{'id': '148', 'type': 'call', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'get_cache_token'},{'id': '150', 'type': 'argument_list', 'children': []},{'id': '151', 'type': 'expression_statement', 'children': ['152']},{'id': '152', 'type': 'call', 'children': ['153', '156']},{'id': '153', 'type': 'attribute', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'dispatch_cache'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'clear'},{'id': '156', 'type': 'argument_list', 'children': []},{'id': '157', 'type': 'return_statement', 'children': ['158']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '159', 'type': 'function_definition', 'children': ['160', '161', '166']},{'id': '160', 'type': 'function_name', 'children': [], 'value': 'wrapper'},{'id': '161', 'type': 'parameters', 'children': ['162', '164']},{'id': '162', 'type': 'list_splat_pattern', 'children': ['163']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '164', 'type': 'dictionary_splat_pattern', 'children': ['165']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '166', 'type': 'block', 'children': ['167']},{'id': '167', 'type': 'return_statement', 'children': ['168']},{'id': '168', 'type': 'call', 'children': ['169', '177']},{'id': '169', 'type': 'call', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'dispatch'},{'id': '171', 'type': 'argument_list', 'children': ['172']},{'id': '172', 'type': 'attribute', 'children': ['173', '176']},{'id': '173', 'type': 'subscript', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '175', 'type': 'integer', 'children': [], 'value': '0'},{'id': '176', 'type': 'identifier', 'children': [], 'value': '__class__'},{'id': '177', 'type': 'argument_list', 'children': ['178', '180']},{'id': '178', 'type': 'list_splat', 'children': ['179']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '180', 'type': 'dictionary_splat', 'children': ['181']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '187']},{'id': '184', 'type': 'subscript', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'registry'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'object'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '188', 'type': 'expression_statement', 'children': ['189']},{'id': '189', 'type': 'assignment', 'children': ['190', '193']},{'id': '190', 'type': 'attribute', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'wrapper'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'assignment', 'children': ['196', '199']},{'id': '196', 'type': 'attribute', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'wrapper'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'dispatch'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'dispatch'},{'id': '200', 'type': 'expression_statement', 'children': ['201']},{'id': '201', 'type': 'assignment', 'children': ['202', '205']},{'id': '202', 'type': 'attribute', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'wrapper'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'registry'},{'id': '205', 'type': 'call', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'MappingProxyType'},{'id': '207', 'type': 'argument_list', 'children': ['208']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'registry'},{'id': '209', 'type': 'expression_statement', 'children': ['210']},{'id': '210', 'type': 'assignment', 'children': ['211', '214']},{'id': '211', 'type': 'attribute', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'wrapper'},{'id': '213', 'type': 'identifier', 'children': [], 'value': '_clear_cache'},{'id': '214', 'type': 'attribute', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'dispatch_cache'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'clear'},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'call', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'update_wrapper'},{'id': '220', 'type': 'argument_list', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'wrapper'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '223', 'type': 'return_statement', 'children': ['224']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'wrapper'} | def singledispatch(function):
registry = {}
dispatch_cache = WeakKeyDictionary()
def ns():
pass
ns.cache_token = None
def dispatch(cls):
if ns.cache_token is not None:
current_token = get_cache_token()
if ns.cache_token != current_token:
dispatch_cache.clear()
ns.cache_token = current_token
try:
impl = dispatch_cache[cls]
except KeyError:
try:
impl = registry[cls]
except KeyError:
impl = _find_impl(cls, registry)
dispatch_cache[cls] = impl
return impl
def register(cls, func=None):
if func is None:
return lambda f: register(cls, f)
registry[cls] = func
if ns.cache_token is None and hasattr(cls, '__abstractmethods__'):
ns.cache_token = get_cache_token()
dispatch_cache.clear()
return func
def wrapper(*args, **kw):
return dispatch(args[0].__class__)(*args, **kw)
registry[object] = function
wrapper.register = register
wrapper.dispatch = dispatch
wrapper.registry = MappingProxyType(registry)
wrapper._clear_cache = dispatch_cache.clear
update_wrapper(wrapper, function)
return wrapper |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '40']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'createResource'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13', '16', '19', '22', '25', '28', '31', '34', '37']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'resource_type'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'title'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'resource_file'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'resource_filename'},{'id': '12', 'type': 'None', 'children': []},{'id': '13', 'type': 'default_parameter', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'abstract'},{'id': '15', 'type': 'None', 'children': []},{'id': '16', 'type': 'default_parameter', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'keywords'},{'id': '18', 'type': 'None', 'children': []},{'id': '19', 'type': 'default_parameter', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'edit_users'},{'id': '21', 'type': 'None', 'children': []},{'id': '22', 'type': 'default_parameter', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'view_users'},{'id': '24', 'type': 'None', 'children': []},{'id': '25', 'type': 'default_parameter', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'edit_groups'},{'id': '27', 'type': 'None', 'children': []},{'id': '28', 'type': 'default_parameter', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'view_groups'},{'id': '30', 'type': 'None', 'children': []},{'id': '31', 'type': 'default_parameter', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '33', 'type': 'None', 'children': []},{'id': '34', 'type': 'default_parameter', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'extra_metadata'},{'id': '36', 'type': 'None', 'children': []},{'id': '37', 'type': 'default_parameter', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'progress_callback'},{'id': '39', 'type': 'None', 'children': []},{'id': '40', 'type': 'block', 'children': ['41', '54', '58', '87', '97', '106', '135', '144', '153', '162', '171', '180', '189', '203', '210', '219', '227', '248', '265', '299', '307', '313']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'string', 'children': [], 'value': '"{url_base}/resource/"'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'url_base'},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'url_base'},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'close_fd'},{'id': '57', 'type': 'False', 'children': []},{'id': '58', 'type': 'if_statement', 'children': ['59', '64']},{'id': '59', 'type': 'comparison_operator', 'children': ['60', '61'], 'value': 'not'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'resource_type'},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'resource_types'},{'id': '64', 'type': 'block', 'children': ['65']},{'id': '65', 'type': 'raise_statement', 'children': ['66']},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'HydroShareArgumentException'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'string', 'children': [], 'value': '"Resource type {0} is not among known resources: {1}"'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '73', 'type': 'argument_list', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'resource_type'},{'id': '75', 'type': 'call', 'children': ['76', '79']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'string', 'children': [], 'value': '", "'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'list_comprehension', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '82', 'type': 'for_in_clause', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'resource_types'},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '90', 'type': 'dictionary', 'children': ['91', '94']},{'id': '91', 'type': 'pair', 'children': ['92', '93']},{'id': '92', 'type': 'string', 'children': [], 'value': "'resource_type'"},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'resource_type'},{'id': '94', 'type': 'pair', 'children': ['95', '96']},{'id': '95', 'type': 'string', 'children': [], 'value': "'title'"},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'title'},{'id': '97', 'type': 'if_statement', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'abstract'},{'id': '99', 'type': 'block', 'children': ['100']},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'assignment', 'children': ['102', '105']},{'id': '102', 'type': 'subscript', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '104', 'type': 'string', 'children': [], 'value': "'abstract'"},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'abstract'},{'id': '106', 'type': 'if_statement', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'keywords'},{'id': '108', 'type': 'block', 'children': ['109']},{'id': '109', 'type': 'for_statement', 'children': ['110', '113', '117']},{'id': '110', 'type': 'tuple_pattern', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '113', 'type': 'call', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '115', 'type': 'argument_list', 'children': ['116']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'keywords'},{'id': '117', 'type': 'block', 'children': ['118', '129']},{'id': '118', 'type': 'expression_statement', 'children': ['119']},{'id': '119', 'type': 'assignment', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '121', 'type': 'call', 'children': ['122', '125']},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'string', 'children': [], 'value': '"keywords[{index}]"'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'keyword_argument', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '134']},{'id': '131', 'type': 'subscript', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '135', 'type': 'if_statement', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'edit_users'},{'id': '137', 'type': 'block', 'children': ['138']},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '143']},{'id': '140', 'type': 'subscript', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '142', 'type': 'string', 'children': [], 'value': "'edit_users'"},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'edit_users'},{'id': '144', 'type': 'if_statement', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'view_users'},{'id': '146', 'type': 'block', 'children': ['147']},{'id': '147', 'type': 'expression_statement', 'children': ['148']},{'id': '148', 'type': 'assignment', 'children': ['149', '152']},{'id': '149', 'type': 'subscript', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '151', 'type': 'string', 'children': [], 'value': "'view_users'"},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'view_users'},{'id': '153', 'type': 'if_statement', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'edit_groups'},{'id': '155', 'type': 'block', 'children': ['156']},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'assignment', 'children': ['158', '161']},{'id': '158', 'type': 'subscript', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '160', 'type': 'string', 'children': [], 'value': "'edit_groups'"},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'edit_groups'},{'id': '162', 'type': 'if_statement', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'view_groups'},{'id': '164', 'type': 'block', 'children': ['165']},{'id': '165', 'type': 'expression_statement', 'children': ['166']},{'id': '166', 'type': 'assignment', 'children': ['167', '170']},{'id': '167', 'type': 'subscript', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '169', 'type': 'string', 'children': [], 'value': "'view_groups'"},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'view_groups'},{'id': '171', 'type': 'if_statement', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '173', 'type': 'block', 'children': ['174']},{'id': '174', 'type': 'expression_statement', 'children': ['175']},{'id': '175', 'type': 'assignment', 'children': ['176', '179']},{'id': '176', 'type': 'subscript', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '178', 'type': 'string', 'children': [], 'value': "'metadata'"},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '180', 'type': 'if_statement', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'extra_metadata'},{'id': '182', 'type': 'block', 'children': ['183']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'assignment', 'children': ['185', '188']},{'id': '185', 'type': 'subscript', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '187', 'type': 'string', 'children': [], 'value': "'extra_metadata'"},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'extra_metadata'},{'id': '189', 'type': 'if_statement', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'resource_file'},{'id': '191', 'type': 'block', 'children': ['192']},{'id': '192', 'type': 'expression_statement', 'children': ['193']},{'id': '193', 'type': 'assignment', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'close_fd'},{'id': '195', 'type': 'call', 'children': ['196', '199']},{'id': '196', 'type': 'attribute', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '198', 'type': 'identifier', 'children': [], 'value': '_prepareFileForUpload'},{'id': '199', 'type': 'argument_list', 'children': ['200', '201', '202']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'resource_file'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'resource_filename'},{'id': '203', 'type': 'expression_statement', 'children': ['204']},{'id': '204', 'type': 'assignment', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'encoder'},{'id': '206', 'type': 'call', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'MultipartEncoder'},{'id': '208', 'type': 'argument_list', 'children': ['209']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '210', 'type': 'if_statement', 'children': ['211', '214']},{'id': '211', 'type': 'comparison_operator', 'children': ['212', '213'], 'value': 'is'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'progress_callback'},{'id': '213', 'type': 'None', 'children': []},{'id': '214', 'type': 'block', 'children': ['215']},{'id': '215', 'type': 'expression_statement', 'children': ['216']},{'id': '216', 'type': 'assignment', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'progress_callback'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'default_progress_callback'},{'id': '219', 'type': 'expression_statement', 'children': ['220']},{'id': '220', 'type': 'assignment', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'monitor'},{'id': '222', 'type': 'call', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'MultipartEncoderMonitor'},{'id': '224', 'type': 'argument_list', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'encoder'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'progress_callback'},{'id': '227', 'type': 'expression_statement', 'children': ['228']},{'id': '228', 'type': 'assignment', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '230', 'type': 'call', 'children': ['231', '234']},{'id': '231', 'type': 'attribute', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '233', 'type': 'identifier', 'children': [], 'value': '_request'},{'id': '234', 'type': 'argument_list', 'children': ['235', '236', '237', '240']},{'id': '235', 'type': 'string', 'children': [], 'value': "'POST'"},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '237', 'type': 'keyword_argument', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'monitor'},{'id': '240', 'type': 'keyword_argument', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'headers'},{'id': '242', 'type': 'dictionary', 'children': ['243']},{'id': '243', 'type': 'pair', 'children': ['244', '245']},{'id': '244', 'type': 'string', 'children': [], 'value': "'Content-Type'"},{'id': '245', 'type': 'attribute', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'monitor'},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'content_type'},{'id': '248', 'type': 'if_statement', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'close_fd'},{'id': '250', 'type': 'block', 'children': ['251', '259']},{'id': '251', 'type': 'expression_statement', 'children': ['252']},{'id': '252', 'type': 'assignment', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '254', 'type': 'subscript', 'children': ['255', '258']},{'id': '255', 'type': 'subscript', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '257', 'type': 'string', 'children': [], 'value': "'file'"},{'id': '258', 'type': 'integer', 'children': [], 'value': '1'},{'id': '259', 'type': 'expression_statement', 'children': ['260']},{'id': '260', 'type': 'call', 'children': ['261', '264']},{'id': '261', 'type': 'attribute', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '264', 'type': 'argument_list', 'children': []},{'id': '265', 'type': 'if_statement', 'children': ['266', '271']},{'id': '266', 'type': 'comparison_operator', 'children': ['267', '270'], 'value': '!='},{'id': '267', 'type': 'attribute', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '270', 'type': 'integer', 'children': [], 'value': '201'},{'id': '271', 'type': 'block', 'children': ['272']},{'id': '272', 'type': 'if_statement', 'children': ['273', '278', '286']},{'id': '273', 'type': 'comparison_operator', 'children': ['274', '277'], 'value': '=='},{'id': '274', 'type': 'attribute', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '277', 'type': 'integer', 'children': [], 'value': '403'},{'id': '278', 'type': 'block', 'children': ['279']},{'id': '279', 'type': 'raise_statement', 'children': ['280']},{'id': '280', 'type': 'call', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'HydroShareNotAuthorized'},{'id': '282', 'type': 'argument_list', 'children': ['283']},{'id': '283', 'type': 'tuple', 'children': ['284', '285']},{'id': '284', 'type': 'string', 'children': [], 'value': "'POST'"},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '286', 'type': 'else_clause', 'children': ['287']},{'id': '287', 'type': 'block', 'children': ['288']},{'id': '288', 'type': 'raise_statement', 'children': ['289']},{'id': '289', 'type': 'call', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'HydroShareHTTPException'},{'id': '291', 'type': 'argument_list', 'children': ['292']},{'id': '292', 'type': 'tuple', 'children': ['293', '294', '295', '298']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '294', 'type': 'string', 'children': [], 'value': "'POST'"},{'id': '295', 'type': 'attribute', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '299', 'type': 'expression_statement', 'children': ['300']},{'id': '300', 'type': 'assignment', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '302', 'type': 'call', 'children': ['303', '306']},{'id': '303', 'type': 'attribute', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '306', 'type': 'argument_list', 'children': []},{'id': '307', 'type': 'expression_statement', 'children': ['308']},{'id': '308', 'type': 'assignment', 'children': ['309', '310']},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'new_resource_id'},{'id': '310', 'type': 'subscript', 'children': ['311', '312']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '312', 'type': 'string', 'children': [], 'value': "'resource_id'"},{'id': '313', 'type': 'return_statement', 'children': ['314']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'new_resource_id'} | def createResource(self, resource_type, title, resource_file=None, resource_filename=None,
abstract=None, keywords=None,
edit_users=None, view_users=None, edit_groups=None, view_groups=None,
metadata=None, extra_metadata=None, progress_callback=None):
url = "{url_base}/resource/".format(url_base=self.url_base)
close_fd = False
if resource_type not in self.resource_types:
raise HydroShareArgumentException("Resource type {0} is not among known resources: {1}".format(resource_type,
", ".join([r for r in self.resource_types])))
params = {'resource_type': resource_type, 'title': title}
if abstract:
params['abstract'] = abstract
if keywords:
for (i, kw) in enumerate(keywords):
key = "keywords[{index}]".format(index=i)
params[key] = kw
if edit_users:
params['edit_users'] = edit_users
if view_users:
params['view_users'] = view_users
if edit_groups:
params['edit_groups'] = edit_groups
if view_groups:
params['view_groups'] = view_groups
if metadata:
params['metadata'] = metadata
if extra_metadata:
params['extra_metadata'] = extra_metadata
if resource_file:
close_fd = self._prepareFileForUpload(params, resource_file, resource_filename)
encoder = MultipartEncoder(params)
if progress_callback is None:
progress_callback = default_progress_callback
monitor = MultipartEncoderMonitor(encoder, progress_callback)
r = self._request('POST', url, data=monitor, headers={'Content-Type': monitor.content_type})
if close_fd:
fd = params['file'][1]
fd.close()
if r.status_code != 201:
if r.status_code == 403:
raise HydroShareNotAuthorized(('POST', url))
else:
raise HydroShareHTTPException((url, 'POST', r.status_code, params))
response = r.json()
new_resource_id = response['resource_id']
return new_resource_id |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'getResourceFile'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'pid'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'destination'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'block', 'children': ['11', '30', '76', '89', '136']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '14', 'type': 'call', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'string', 'children': [], 'value': '"{url_base}/resource/{pid}/files/{filename}"'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '18', 'type': 'argument_list', 'children': ['19', '24', '27']},{'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'url_base'},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'url_base'},{'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'pid'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'pid'},{'id': '27', 'type': 'keyword_argument', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '30', 'type': 'if_statement', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'destination'},{'id': '32', 'type': 'block', 'children': ['33', '54']},{'id': '33', 'type': 'if_statement', 'children': ['34', '43']},{'id': '34', 'type': 'not_operator', 'children': ['35']},{'id': '35', 'type': 'call', 'children': ['36', '41']},{'id': '36', 'type': 'attribute', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'isdir'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'destination'},{'id': '43', 'type': 'block', 'children': ['44']},{'id': '44', 'type': 'raise_statement', 'children': ['45']},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'HydroShareArgumentException'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'string', 'children': [], 'value': '"{0} is not a directory."'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'destination'},{'id': '54', 'type': 'if_statement', 'children': ['55', '65']},{'id': '55', 'type': 'not_operator', 'children': ['56']},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'access'},{'id': '60', 'type': 'argument_list', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'destination'},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'W_OK'},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'raise_statement', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'HydroShareArgumentException'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'call', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'string', 'children': [], 'value': '"You do not have write permissions to directory \'{0}\'."'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '74', 'type': 'argument_list', 'children': ['75']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'destination'},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '79', 'type': 'call', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '82', 'type': 'identifier', 'children': [], 'value': '_request'},{'id': '83', 'type': 'argument_list', 'children': ['84', '85', '86']},{'id': '84', 'type': 'string', 'children': [], 'value': "'GET'"},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '86', 'type': 'keyword_argument', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'stream'},{'id': '88', 'type': 'True', 'children': []},{'id': '89', 'type': 'if_statement', 'children': ['90', '95']},{'id': '90', 'type': 'comparison_operator', 'children': ['91', '94'], 'value': '!='},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '94', 'type': 'integer', 'children': [], 'value': '200'},{'id': '95', 'type': 'block', 'children': ['96']},{'id': '96', 'type': 'if_statement', 'children': ['97', '102', '110', '124']},{'id': '97', 'type': 'comparison_operator', 'children': ['98', '101'], 'value': '=='},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '101', 'type': 'integer', 'children': [], 'value': '403'},{'id': '102', 'type': 'block', 'children': ['103']},{'id': '103', 'type': 'raise_statement', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'HydroShareNotAuthorized'},{'id': '106', 'type': 'argument_list', 'children': ['107']},{'id': '107', 'type': 'tuple', 'children': ['108', '109']},{'id': '108', 'type': 'string', 'children': [], 'value': "'GET'"},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '110', 'type': 'elif_clause', 'children': ['111', '116']},{'id': '111', 'type': 'comparison_operator', 'children': ['112', '115'], 'value': '=='},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '115', 'type': 'integer', 'children': [], 'value': '404'},{'id': '116', 'type': 'block', 'children': ['117']},{'id': '117', 'type': 'raise_statement', 'children': ['118']},{'id': '118', 'type': 'call', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'HydroShareNotFound'},{'id': '120', 'type': 'argument_list', 'children': ['121']},{'id': '121', 'type': 'tuple', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'pid'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '124', 'type': 'else_clause', 'children': ['125']},{'id': '125', 'type': 'block', 'children': ['126']},{'id': '126', 'type': 'raise_statement', 'children': ['127']},{'id': '127', 'type': 'call', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'HydroShareHTTPException'},{'id': '129', 'type': 'argument_list', 'children': ['130']},{'id': '130', 'type': 'tuple', 'children': ['131', '132', '133']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '132', 'type': 'string', 'children': [], 'value': "'GET'"},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '136', 'type': 'if_statement', 'children': ['137', '140', '148']},{'id': '137', 'type': 'comparison_operator', 'children': ['138', '139'], 'value': 'is'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'destination'},{'id': '139', 'type': 'None', 'children': []},{'id': '140', 'type': 'block', 'children': ['141']},{'id': '141', 'type': 'return_statement', 'children': ['142']},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'iter_content'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'STREAM_CHUNK_SIZE'},{'id': '148', 'type': 'else_clause', 'children': ['149']},{'id': '149', 'type': 'block', 'children': ['150', '162', '190']},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'assignment', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'filepath'},{'id': '153', 'type': 'call', 'children': ['154', '159']},{'id': '154', 'type': 'attribute', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '159', 'type': 'argument_list', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'destination'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '162', 'type': 'with_statement', 'children': ['163', '173']},{'id': '163', 'type': 'with_clause', 'children': ['164']},{'id': '164', 'type': 'with_item', 'children': ['165']},{'id': '165', 'type': 'as_pattern', 'children': ['166', '171']},{'id': '166', 'type': 'call', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '168', 'type': 'argument_list', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'filepath'},{'id': '170', 'type': 'string', 'children': [], 'value': "'wb'"},{'id': '171', 'type': 'as_pattern_target', 'children': ['172']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '173', 'type': 'block', 'children': ['174']},{'id': '174', 'type': 'for_statement', 'children': ['175', '176', '182']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'chunk'},{'id': '176', 'type': 'call', 'children': ['177', '180']},{'id': '177', 'type': 'attribute', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'iter_content'},{'id': '180', 'type': 'argument_list', 'children': ['181']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'STREAM_CHUNK_SIZE'},{'id': '182', 'type': 'block', 'children': ['183']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'call', 'children': ['185', '188']},{'id': '185', 'type': 'attribute', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'fd'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '188', 'type': 'argument_list', 'children': ['189']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'chunk'},{'id': '190', 'type': 'return_statement', 'children': ['191']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'filepath'} | def getResourceFile(self, pid, filename, destination=None):
url = "{url_base}/resource/{pid}/files/{filename}".format(url_base=self.url_base,
pid=pid,
filename=filename)
if destination:
if not os.path.isdir(destination):
raise HydroShareArgumentException("{0} is not a directory.".format(destination))
if not os.access(destination, os.W_OK):
raise HydroShareArgumentException("You do not have write permissions to directory '{0}'.".format(destination))
r = self._request('GET', url, stream=True)
if r.status_code != 200:
if r.status_code == 403:
raise HydroShareNotAuthorized(('GET', url))
elif r.status_code == 404:
raise HydroShareNotFound((pid, filename))
else:
raise HydroShareHTTPException((url, 'GET', r.status_code))
if destination is None:
return r.iter_content(STREAM_CHUNK_SIZE)
else:
filepath = os.path.join(destination, filename)
with open(filepath, 'wb') as fd:
for chunk in r.iter_content(STREAM_CHUNK_SIZE):
fd.write(chunk)
return filepath |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'upsert'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '10', '16', '29', '449']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'required_parameters'},{'id': '9', 'type': 'list', 'children': [], 'value': '[]'},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': '_stackParameters'},{'id': '15', 'type': 'list', 'children': [], 'value': '[]'},{'id': '16', 'type': 'try_statement', 'children': ['17', '24']},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '22', 'type': 'identifier', 'children': [], 'value': '_initialize_upsert'},{'id': '23', 'type': 'argument_list', 'children': []},{'id': '24', 'type': 'except_clause', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'return_statement', 'children': ['28']},{'id': '28', 'type': 'False', 'children': []},{'id': '29', 'type': 'try_statement', 'children': ['30', '414']},{'id': '30', 'type': 'block', 'children': ['31', '41', '63', '75', '87', '91', '155', '170', '221', '243', '261']},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'available_parameters'},{'id': '34', 'type': 'call', 'children': ['35', '40']},{'id': '35', 'type': 'attribute', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '38', 'type': 'identifier', 'children': [], 'value': '_parameters'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '40', 'type': 'argument_list', 'children': []},{'id': '41', 'type': 'for_statement', 'children': ['42', '43', '52']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'parameter_name'},{'id': '43', 'type': 'call', 'children': ['44', '49']},{'id': '44', 'type': 'attribute', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': '_template'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '49', 'type': 'argument_list', 'children': ['50', '51']},{'id': '50', 'type': 'string', 'children': [], 'value': "'Parameters'"},{'id': '51', 'type': 'dictionary', 'children': []},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'required_parameters'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'parameter_name'},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'call', 'children': ['65', '68']},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'binary_operator', 'children': ['70', '71'], 'value': '+'},{'id': '70', 'type': 'string', 'children': [], 'value': "' required parameters: '"},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'required_parameters'},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'binary_operator', 'children': ['82', '83'], 'value': '+'},{'id': '82', 'type': 'string', 'children': [], 'value': "'available parameters: '"},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'available_parameters'},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '90', 'type': 'list', 'children': [], 'value': '[]'},{'id': '91', 'type': 'for_statement', 'children': ['92', '93', '94']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'required_parameter'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'required_parameters'},{'id': '94', 'type': 'block', 'children': ['95', '99', '108', '115', '148']},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'parameter'},{'id': '98', 'type': 'dictionary', 'children': []},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '104']},{'id': '101', 'type': 'subscript', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'parameter'},{'id': '103', 'type': 'string', 'children': [], 'value': "'ParameterKey'"},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '106', 'type': 'argument_list', 'children': ['107']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'required_parameter'},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'assignment', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'required_parameter'},{'id': '111', 'type': 'call', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'required_parameter'},{'id': '115', 'type': 'if_statement', 'children': ['116', '121', '132']},{'id': '116', 'type': 'comparison_operator', 'children': ['117', '118'], 'value': 'in'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'required_parameter'},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '120', 'type': 'identifier', 'children': [], 'value': '_parameters'},{'id': '121', 'type': 'block', 'children': ['122']},{'id': '122', 'type': 'expression_statement', 'children': ['123']},{'id': '123', 'type': 'assignment', 'children': ['124', '127']},{'id': '124', 'type': 'subscript', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'parameter'},{'id': '126', 'type': 'string', 'children': [], 'value': "'ParameterValue'"},{'id': '127', 'type': 'subscript', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '130', 'type': 'identifier', 'children': [], 'value': '_parameters'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'required_parameter'},{'id': '132', 'type': 'else_clause', 'children': ['133']},{'id': '133', 'type': 'block', 'children': ['134']},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '139']},{'id': '136', 'type': 'subscript', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'parameter'},{'id': '138', 'type': 'string', 'children': [], 'value': "'ParameterValue'"},{'id': '139', 'type': 'subscript', 'children': ['140', '143']},{'id': '140', 'type': 'attribute', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '142', 'type': 'identifier', 'children': [], 'value': '_parameters'},{'id': '143', 'type': 'call', 'children': ['144', '147']},{'id': '144', 'type': 'attribute', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'required_parameter'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '147', 'type': 'argument_list', 'children': []},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'call', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'parameter'},{'id': '155', 'type': 'if_statement', 'children': ['156', '162']},{'id': '156', 'type': 'not_operator', 'children': ['157']},{'id': '157', 'type': 'call', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '160', 'type': 'identifier', 'children': [], 'value': '_analyze_stuff'},{'id': '161', 'type': 'argument_list', 'children': []},{'id': '162', 'type': 'block', 'children': ['163']},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'call', 'children': ['165', '168']},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '168', 'type': 'argument_list', 'children': ['169']},{'id': '169', 'type': 'integer', 'children': [], 'value': '1'},{'id': '170', 'type': 'if_statement', 'children': ['171', '180']},{'id': '171', 'type': 'call', 'children': ['172', '177']},{'id': '172', 'type': 'attribute', 'children': ['173', '176']},{'id': '173', 'type': 'attribute', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '175', 'type': 'identifier', 'children': [], 'value': '_config'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '177', 'type': 'argument_list', 'children': ['178', '179']},{'id': '178', 'type': 'string', 'children': [], 'value': "'dryrun'"},{'id': '179', 'type': 'False', 'children': []},{'id': '180', 'type': 'block', 'children': ['181', '188', '197', '207', '214']},{'id': '181', 'type': 'expression_statement', 'children': ['182']},{'id': '182', 'type': 'call', 'children': ['183', '186']},{'id': '183', 'type': 'attribute', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '186', 'type': 'argument_list', 'children': ['187']},{'id': '187', 'type': 'string', 'children': [], 'value': "'Generating change set'"},{'id': '188', 'type': 'expression_statement', 'children': ['189']},{'id': '189', 'type': 'assignment', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'set_id'},{'id': '191', 'type': 'call', 'children': ['192', '195']},{'id': '192', 'type': 'attribute', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '194', 'type': 'identifier', 'children': [], 'value': '_generate_change_set'},{'id': '195', 'type': 'argument_list', 'children': ['196']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '197', 'type': 'if_statement', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'set_id'},{'id': '199', 'type': 'block', 'children': ['200']},{'id': '200', 'type': 'expression_statement', 'children': ['201']},{'id': '201', 'type': 'call', 'children': ['202', '205']},{'id': '202', 'type': 'attribute', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '204', 'type': 'identifier', 'children': [], 'value': '_describe_change_set'},{'id': '205', 'type': 'argument_list', 'children': ['206']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'set_id'},{'id': '207', 'type': 'expression_statement', 'children': ['208']},{'id': '208', 'type': 'call', 'children': ['209', '212']},{'id': '209', 'type': 'attribute', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '212', 'type': 'argument_list', 'children': ['213']},{'id': '213', 'type': 'string', 'children': [], 'value': "'This was a dryrun'"},{'id': '214', 'type': 'expression_statement', 'children': ['215']},{'id': '215', 'type': 'call', 'children': ['216', '219']},{'id': '216', 'type': 'attribute', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '219', 'type': 'argument_list', 'children': ['220']},{'id': '220', 'type': 'integer', 'children': [], 'value': '0'},{'id': '221', 'type': 'expression_statement', 'children': ['222']},{'id': '222', 'type': 'call', 'children': ['223', '228']},{'id': '223', 'type': 'attribute', 'children': ['224', '227']},{'id': '224', 'type': 'attribute', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '226', 'type': 'identifier', 'children': [], 'value': '_tags'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '228', 'type': 'argument_list', 'children': ['229']},{'id': '229', 'type': 'dictionary', 'children': ['230', '233']},{'id': '230', 'type': 'pair', 'children': ['231', '232']},{'id': '231', 'type': 'string', 'children': [], 'value': '"Key"'},{'id': '232', 'type': 'string', 'children': [], 'value': '"CODE_VERSION_SD"'},{'id': '233', 'type': 'pair', 'children': ['234', '235']},{'id': '234', 'type': 'string', 'children': [], 'value': '"Value"'},{'id': '235', 'type': 'call', 'children': ['236', '241']},{'id': '236', 'type': 'attribute', 'children': ['237', '240']},{'id': '237', 'type': 'attribute', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '239', 'type': 'identifier', 'children': [], 'value': '_config'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '241', 'type': 'argument_list', 'children': ['242']},{'id': '242', 'type': 'string', 'children': [], 'value': "'codeVersion'"},{'id': '243', 'type': 'expression_statement', 'children': ['244']},{'id': '244', 'type': 'call', 'children': ['245', '250']},{'id': '245', 'type': 'attribute', 'children': ['246', '249']},{'id': '246', 'type': 'attribute', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '248', 'type': 'identifier', 'children': [], 'value': '_tags'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '250', 'type': 'argument_list', 'children': ['251']},{'id': '251', 'type': 'dictionary', 'children': ['252', '255']},{'id': '252', 'type': 'pair', 'children': ['253', '254']},{'id': '253', 'type': 'string', 'children': [], 'value': '"Key"'},{'id': '254', 'type': 'string', 'children': [], 'value': '"ANSWER"'},{'id': '255', 'type': 'pair', 'children': ['256', '257']},{'id': '256', 'type': 'string', 'children': [], 'value': '"Value"'},{'id': '257', 'type': 'call', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '259', 'type': 'argument_list', 'children': ['260']},{'id': '260', 'type': 'integer', 'children': [], 'value': '42'},{'id': '261', 'type': 'if_statement', 'children': ['262', '265', '339']},{'id': '262', 'type': 'attribute', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '264', 'type': 'identifier', 'children': [], 'value': '_updateStack'},{'id': '265', 'type': 'block', 'children': ['266', '321']},{'id': '266', 'type': 'expression_statement', 'children': ['267']},{'id': '267', 'type': 'assignment', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'stack'},{'id': '269', 'type': 'call', 'children': ['270', '275']},{'id': '270', 'type': 'attribute', 'children': ['271', '274']},{'id': '271', 'type': 'attribute', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '273', 'type': 'identifier', 'children': [], 'value': '_cloudFormation'},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'update_stack'},{'id': '275', 'type': 'argument_list', 'children': ['276', '293', '298', '301', '306', '311']},{'id': '276', 'type': 'keyword_argument', 'children': ['277', '278']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'StackName'},{'id': '278', 'type': 'call', 'children': ['279', '290']},{'id': '279', 'type': 'attribute', 'children': ['280', '289']},{'id': '280', 'type': 'call', 'children': ['281', '286']},{'id': '281', 'type': 'attribute', 'children': ['282', '285']},{'id': '282', 'type': 'attribute', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '284', 'type': 'identifier', 'children': [], 'value': '_config'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '286', 'type': 'argument_list', 'children': ['287', '288']},{'id': '287', 'type': 'string', 'children': [], 'value': "'environment'"},{'id': '288', 'type': 'dictionary', 'children': []},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '290', 'type': 'argument_list', 'children': ['291', '292']},{'id': '291', 'type': 'string', 'children': [], 'value': "'stack_name'"},{'id': '292', 'type': 'None', 'children': []},{'id': '293', 'type': 'keyword_argument', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'TemplateURL'},{'id': '295', 'type': 'attribute', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '297', 'type': 'identifier', 'children': [], 'value': '_templateUrl'},{'id': '298', 'type': 'keyword_argument', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'Parameters'},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '301', 'type': 'keyword_argument', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'Capabilities'},{'id': '303', 'type': 'list', 'children': ['304', '305'], 'value': "['CAPABILITY_IAM', 'CAPABILITY_NAMED_IAM']"},{'id': '304', 'type': 'string', 'children': [], 'value': "'CAPABILITY_IAM'"},{'id': '305', 'type': 'string', 'children': [], 'value': "'CAPABILITY_NAMED_IAM'"},{'id': '306', 'type': 'keyword_argument', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'Tags'},{'id': '308', 'type': 'attribute', 'children': ['309', '310']},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '310', 'type': 'identifier', 'children': [], 'value': '_tags'},{'id': '311', 'type': 'keyword_argument', 'children': ['312', '313']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'ClientRequestToken'},{'id': '313', 'type': 'call', 'children': ['314', '315']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '315', 'type': 'argument_list', 'children': ['316']},{'id': '316', 'type': 'call', 'children': ['317', '320']},{'id': '317', 'type': 'attribute', 'children': ['318', '319']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'uuid'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'uuid4'},{'id': '320', 'type': 'argument_list', 'children': []},{'id': '321', 'type': 'expression_statement', 'children': ['322']},{'id': '322', 'type': 'call', 'children': ['323', '326']},{'id': '323', 'type': 'attribute', 'children': ['324', '325']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '326', 'type': 'argument_list', 'children': ['327']},{'id': '327', 'type': 'call', 'children': ['328', '331']},{'id': '328', 'type': 'attribute', 'children': ['329', '330']},{'id': '329', 'type': 'string', 'children': [], 'value': "'existing stack ID: {}'"},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '331', 'type': 'argument_list', 'children': ['332']},{'id': '332', 'type': 'call', 'children': ['333', '336']},{'id': '333', 'type': 'attribute', 'children': ['334', '335']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'stack'},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '336', 'type': 'argument_list', 'children': ['337', '338']},{'id': '337', 'type': 'string', 'children': [], 'value': "'StackId'"},{'id': '338', 'type': 'string', 'children': [], 'value': "'unknown'"},{'id': '339', 'type': 'else_clause', 'children': ['340']},{'id': '340', 'type': 'block', 'children': ['341', '396']},{'id': '341', 'type': 'expression_statement', 'children': ['342']},{'id': '342', 'type': 'assignment', 'children': ['343', '344']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'stack'},{'id': '344', 'type': 'call', 'children': ['345', '350']},{'id': '345', 'type': 'attribute', 'children': ['346', '349']},{'id': '346', 'type': 'attribute', 'children': ['347', '348']},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '348', 'type': 'identifier', 'children': [], 'value': '_cloudFormation'},{'id': '349', 'type': 'identifier', 'children': [], 'value': 'create_stack'},{'id': '350', 'type': 'argument_list', 'children': ['351', '368', '373', '376', '381', '386']},{'id': '351', 'type': 'keyword_argument', 'children': ['352', '353']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'StackName'},{'id': '353', 'type': 'call', 'children': ['354', '365']},{'id': '354', 'type': 'attribute', 'children': ['355', '364']},{'id': '355', 'type': 'call', 'children': ['356', '361']},{'id': '356', 'type': 'attribute', 'children': ['357', '360']},{'id': '357', 'type': 'attribute', 'children': ['358', '359']},{'id': '358', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '359', 'type': 'identifier', 'children': [], 'value': '_config'},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '361', 'type': 'argument_list', 'children': ['362', '363']},{'id': '362', 'type': 'string', 'children': [], 'value': "'environment'"},{'id': '363', 'type': 'dictionary', 'children': []},{'id': '364', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '365', 'type': 'argument_list', 'children': ['366', '367']},{'id': '366', 'type': 'string', 'children': [], 'value': "'stack_name'"},{'id': '367', 'type': 'None', 'children': []},{'id': '368', 'type': 'keyword_argument', 'children': ['369', '370']},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'TemplateURL'},{'id': '370', 'type': 'attribute', 'children': ['371', '372']},{'id': '371', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '372', 'type': 'identifier', 'children': [], 'value': '_templateUrl'},{'id': '373', 'type': 'keyword_argument', 'children': ['374', '375']},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'Parameters'},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '376', 'type': 'keyword_argument', 'children': ['377', '378']},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'Capabilities'},{'id': '378', 'type': 'list', 'children': ['379', '380'], 'value': "['CAPABILITY_IAM', 'CAPABILITY_NAMED_IAM']"},{'id': '379', 'type': 'string', 'children': [], 'value': "'CAPABILITY_IAM'"},{'id': '380', 'type': 'string', 'children': [], 'value': "'CAPABILITY_NAMED_IAM'"},{'id': '381', 'type': 'keyword_argument', 'children': ['382', '383']},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'Tags'},{'id': '383', 'type': 'attribute', 'children': ['384', '385']},{'id': '384', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '385', 'type': 'identifier', 'children': [], 'value': '_tags'},{'id': '386', 'type': 'keyword_argument', 'children': ['387', '388']},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'ClientRequestToken'},{'id': '388', 'type': 'call', 'children': ['389', '390']},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '390', 'type': 'argument_list', 'children': ['391']},{'id': '391', 'type': 'call', 'children': ['392', '395']},{'id': '392', 'type': 'attribute', 'children': ['393', '394']},{'id': '393', 'type': 'identifier', 'children': [], 'value': 'uuid'},{'id': '394', 'type': 'identifier', 'children': [], 'value': 'uuid4'},{'id': '395', 'type': 'argument_list', 'children': []},{'id': '396', 'type': 'expression_statement', 'children': ['397']},{'id': '397', 'type': 'call', 'children': ['398', '401']},{'id': '398', 'type': 'attribute', 'children': ['399', '400']},{'id': '399', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '400', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '401', 'type': 'argument_list', 'children': ['402']},{'id': '402', 'type': 'call', 'children': ['403', '406']},{'id': '403', 'type': 'attribute', 'children': ['404', '405']},{'id': '404', 'type': 'string', 'children': [], 'value': "'new stack ID: {}'"},{'id': '405', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '406', 'type': 'argument_list', 'children': ['407']},{'id': '407', 'type': 'call', 'children': ['408', '411']},{'id': '408', 'type': 'attribute', 'children': ['409', '410']},{'id': '409', 'type': 'identifier', 'children': [], 'value': 'stack'},{'id': '410', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '411', 'type': 'argument_list', 'children': ['412', '413']},{'id': '412', 'type': 'string', 'children': [], 'value': "'StackId'"},{'id': '413', 'type': 'string', 'children': [], 'value': "'unknown'"},{'id': '414', 'type': 'except_clause', 'children': ['415', '419']},{'id': '415', 'type': 'as_pattern', 'children': ['416', '417']},{'id': '416', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '417', 'type': 'as_pattern_target', 'children': ['418']},{'id': '418', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '419', 'type': 'block', 'children': ['420', '447']},{'id': '420', 'type': 'if_statement', 'children': ['421', '424', '435']},{'id': '421', 'type': 'attribute', 'children': ['422', '423']},{'id': '422', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '423', 'type': 'identifier', 'children': [], 'value': '_verbose'},{'id': '424', 'type': 'block', 'children': ['425']},{'id': '425', 'type': 'expression_statement', 'children': ['426']},{'id': '426', 'type': 'call', 'children': ['427', '430']},{'id': '427', 'type': 'attribute', 'children': ['428', '429']},{'id': '428', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '429', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '430', 'type': 'argument_list', 'children': ['431', '432']},{'id': '431', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '432', 'type': 'keyword_argument', 'children': ['433', '434']},{'id': '433', 'type': 'identifier', 'children': [], 'value': 'exc_info'},{'id': '434', 'type': 'True', 'children': []},{'id': '435', 'type': 'else_clause', 'children': ['436']},{'id': '436', 'type': 'block', 'children': ['437']},{'id': '437', 'type': 'expression_statement', 'children': ['438']},{'id': '438', 'type': 'call', 'children': ['439', '442']},{'id': '439', 'type': 'attribute', 'children': ['440', '441']},{'id': '440', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '441', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '442', 'type': 'argument_list', 'children': ['443', '444']},{'id': '443', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '444', 'type': 'keyword_argument', 'children': ['445', '446']},{'id': '445', 'type': 'identifier', 'children': [], 'value': 'exc_info'},{'id': '446', 'type': 'False', 'children': []},{'id': '447', 'type': 'return_statement', 'children': ['448']},{'id': '448', 'type': 'False', 'children': []},{'id': '449', 'type': 'return_statement', 'children': ['450']},{'id': '450', 'type': 'True', 'children': []} | def upsert(self):
required_parameters = []
self._stackParameters = []
try:
self._initialize_upsert()
except Exception:
return False
try:
available_parameters = self._parameters.keys()
for parameter_name in self._template.get('Parameters', {}):
required_parameters.append(str(parameter_name))
logging.info(' required parameters: ' + str(required_parameters))
logging.info('available parameters: ' + str(available_parameters))
parameters = []
for required_parameter in required_parameters:
parameter = {}
parameter['ParameterKey'] = str(required_parameter)
required_parameter = str(required_parameter)
if required_parameter in self._parameters:
parameter['ParameterValue'] = self._parameters[required_parameter]
else:
parameter['ParameterValue'] = self._parameters[required_parameter.lower()]
parameters.append(parameter)
if not self._analyze_stuff():
sys.exit(1)
if self._config.get('dryrun', False):
logging.info('Generating change set')
set_id = self._generate_change_set(parameters)
if set_id:
self._describe_change_set(set_id)
logging.info('This was a dryrun')
sys.exit(0)
self._tags.append({"Key": "CODE_VERSION_SD", "Value": self._config.get('codeVersion')})
self._tags.append({"Key": "ANSWER", "Value": str(42)})
if self._updateStack:
stack = self._cloudFormation.update_stack(
StackName=self._config.get('environment', {}).get('stack_name', None),
TemplateURL=self._templateUrl,
Parameters=parameters,
Capabilities=['CAPABILITY_IAM', 'CAPABILITY_NAMED_IAM'],
Tags=self._tags,
ClientRequestToken=str(uuid.uuid4())
)
logging.info('existing stack ID: {}'.format(stack.get('StackId', 'unknown')))
else:
stack = self._cloudFormation.create_stack(
StackName=self._config.get('environment', {}).get('stack_name', None),
TemplateURL=self._templateUrl,
Parameters=parameters,
Capabilities=['CAPABILITY_IAM', 'CAPABILITY_NAMED_IAM'],
Tags=self._tags,
ClientRequestToken=str(uuid.uuid4())
)
logging.info('new stack ID: {}'.format(stack.get('StackId', 'unknown')))
except Exception as x:
if self._verbose:
logging.error(x, exc_info=True)
else:
logging.error(x, exc_info=False)
return False
return True |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'dump'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'fp'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'dictionary_splat_pattern', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'if_statement', 'children': ['18', '19', '50']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'fp'},{'id': '19', 'type': 'block', 'children': ['20', '39']},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '23', 'type': 'call', 'children': ['24', '37']},{'id': '24', 'type': 'attribute', 'children': ['25', '36']},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'YAMLEncoder'},{'id': '27', 'type': 'argument_list', 'children': ['28', '31', '34']},{'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '34', 'type': 'dictionary_splat', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'iterencode'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '39', 'type': 'for_statement', 'children': ['40', '41', '42']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'chunk'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '42', 'type': 'block', 'children': ['43']},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'fp'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'chunk'},{'id': '50', 'type': 'else_clause', 'children': ['51']},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'return_statement', 'children': ['53']},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '55', 'type': 'argument_list', 'children': ['56', '57', '60', '63']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '57', 'type': 'keyword_argument', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '60', 'type': 'keyword_argument', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '63', 'type': 'dictionary_splat', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'kw'} | def dump(obj, fp=None, indent=None, sort_keys=False, **kw):
if fp:
iterable = YAMLEncoder(indent=indent, sort_keys=sort_keys, **kw).iterencode(obj)
for chunk in iterable:
fp.write(chunk)
else:
return dumps(obj, indent=indent, sort_keys=sort_keys, **kw) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_reference'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '5', 'type': 'block', 'children': ['6', '10', '19', '29', '39', '49', '316']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '9', 'type': 'dictionary', 'children': []},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '13', 'type': 'call', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'find'},{'id': '17', 'type': 'argument_list', 'children': ['18']},{'id': '18', 'type': 'string', 'children': [], 'value': "'bibliographyLink'"},{'id': '19', 'type': 'if_statement', 'children': ['20', '23']},{'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': 'is'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '22', 'type': 'None', 'children': []},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'raise_statement', 'children': ['25']},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'MissingElementError'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'string', 'children': [], 'value': "'bibliographyLink'"},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'ref_doi'},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '36', 'type': 'argument_list', 'children': ['37', '38']},{'id': '37', 'type': 'string', 'children': [], 'value': "'doi'"},{'id': '38', 'type': 'None', 'children': []},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'ref_key'},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '46', 'type': 'argument_list', 'children': ['47', '48']},{'id': '47', 'type': 'string', 'children': [], 'value': "'preferredKey'"},{'id': '48', 'type': 'None', 'children': []},{'id': '49', 'type': 'if_statement', 'children': ['50', '53', '274', '308']},{'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': 'is'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'ref_doi'},{'id': '52', 'type': 'None', 'children': []},{'id': '53', 'type': 'block', 'children': ['54']},{'id': '54', 'type': 'try_statement', 'children': ['55', '69', '118']},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '59', 'type': 'subscript', 'children': ['60', '68']},{'id': '60', 'type': 'call', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'crossref_api'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'works'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'ids'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'ref_doi'},{'id': '68', 'type': 'string', 'children': [], 'value': "'message'"},{'id': '69', 'type': 'except_clause', 'children': ['70', '76']},{'id': '70', 'type': 'tuple', 'children': ['71', '72', '75']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'HTTPError'},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'habanero'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'RequestError'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'ConnectionError'},{'id': '76', 'type': 'block', 'children': ['77']},{'id': '77', 'type': 'if_statement', 'children': ['78', '81', '87']},{'id': '78', 'type': 'comparison_operator', 'children': ['79', '80'], 'value': 'is'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'ref_key'},{'id': '80', 'type': 'None', 'children': []},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'raise_statement', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'KeywordError'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'string', 'children': [], 'value': "'DOI not found and preferredKey attribute not set'"},{'id': '87', 'type': 'else_clause', 'children': ['88']},{'id': '88', 'type': 'block', 'children': ['89', '96', '102']},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'call', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '92', 'type': 'argument_list', 'children': ['93']},{'id': '93', 'type': 'concatenated_string', 'children': ['94', '95']},{'id': '94', 'type': 'string', 'children': [], 'value': "'Missing doi attribute in bibliographyLink or lookup failed. '"},{'id': '95', 'type': 'string', 'children': [], 'value': '\'Setting "detail" key as a fallback; please update to the appropriate fields.\''},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'assignment', 'children': ['98', '101']},{'id': '98', 'type': 'subscript', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '100', 'type': 'string', 'children': [], 'value': "'detail'"},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'ref_key'},{'id': '102', 'type': 'if_statement', 'children': ['103', '111']},{'id': '103', 'type': 'comparison_operator', 'children': ['104', '110'], 'value': '!='},{'id': '104', 'type': 'subscript', 'children': ['105', '108']},{'id': '105', 'type': 'subscript', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '107', 'type': 'string', 'children': [], 'value': "'detail'"},{'id': '108', 'type': 'unary_operator', 'children': ['109'], 'value': '-'},{'id': '109', 'type': 'integer', 'children': [], 'value': '1'},{'id': '110', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '111', 'type': 'block', 'children': ['112']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'augmented_assignment', 'children': ['114', '117'], 'value': '+='},{'id': '114', 'type': 'subscript', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '116', 'type': 'string', 'children': [], 'value': "'detail'"},{'id': '117', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '118', 'type': 'else_clause', 'children': ['119']},{'id': '119', 'type': 'block', 'children': ['120', '130', '140', '153', '169', '184', '198', '209', '215']},{'id': '120', 'type': 'if_statement', 'children': ['121', '124']},{'id': '121', 'type': 'comparison_operator', 'children': ['122', '123'], 'value': 'is'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'ref_key'},{'id': '123', 'type': 'None', 'children': []},{'id': '124', 'type': 'block', 'children': ['125']},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '128', 'type': 'argument_list', 'children': ['129']},{'id': '129', 'type': 'string', 'children': [], 'value': "'Using DOI to obtain reference information, rather than preferredKey.'"},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'assignment', 'children': ['132', '135']},{'id': '132', 'type': 'subscript', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '134', 'type': 'string', 'children': [], 'value': "'doi'"},{'id': '135', 'type': 'subscript', 'children': ['136', '139']},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'attrib'},{'id': '139', 'type': 'string', 'children': [], 'value': "'doi'"},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '145']},{'id': '142', 'type': 'subscript', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '144', 'type': 'string', 'children': [], 'value': "'journal'"},{'id': '145', 'type': 'subscript', 'children': ['146', '152']},{'id': '146', 'type': 'call', 'children': ['147', '150']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '150', 'type': 'argument_list', 'children': ['151']},{'id': '151', 'type': 'string', 'children': [], 'value': "'container-title'"},{'id': '152', 'type': 'integer', 'children': [], 'value': '0'},{'id': '153', 'type': 'expression_statement', 'children': ['154']},{'id': '154', 'type': 'assignment', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'ref_year'},{'id': '156', 'type': 'boolean_operator', 'children': ['157', '163'], 'value': 'or'},{'id': '157', 'type': 'call', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '161', 'type': 'argument_list', 'children': ['162']},{'id': '162', 'type': 'string', 'children': [], 'value': "'published-print'"},{'id': '163', 'type': 'call', 'children': ['164', '167']},{'id': '164', 'type': 'attribute', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '167', 'type': 'argument_list', 'children': ['168']},{'id': '168', 'type': 'string', 'children': [], 'value': "'published-online'"},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'assignment', 'children': ['171', '174']},{'id': '171', 'type': 'subscript', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '173', 'type': 'string', 'children': [], 'value': "'year'"},{'id': '174', 'type': 'call', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '176', 'type': 'argument_list', 'children': ['177']},{'id': '177', 'type': 'subscript', 'children': ['178', '183']},{'id': '178', 'type': 'subscript', 'children': ['179', '182']},{'id': '179', 'type': 'subscript', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'ref_year'},{'id': '181', 'type': 'string', 'children': [], 'value': "'date-parts'"},{'id': '182', 'type': 'integer', 'children': [], 'value': '0'},{'id': '183', 'type': 'integer', 'children': [], 'value': '0'},{'id': '184', 'type': 'expression_statement', 'children': ['185']},{'id': '185', 'type': 'assignment', 'children': ['186', '189']},{'id': '186', 'type': 'subscript', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '188', 'type': 'string', 'children': [], 'value': "'volume'"},{'id': '189', 'type': 'call', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '191', 'type': 'argument_list', 'children': ['192']},{'id': '192', 'type': 'call', 'children': ['193', '196']},{'id': '193', 'type': 'attribute', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '196', 'type': 'argument_list', 'children': ['197']},{'id': '197', 'type': 'string', 'children': [], 'value': "'volume'"},{'id': '198', 'type': 'expression_statement', 'children': ['199']},{'id': '199', 'type': 'assignment', 'children': ['200', '203']},{'id': '200', 'type': 'subscript', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '202', 'type': 'string', 'children': [], 'value': "'pages'"},{'id': '203', 'type': 'call', 'children': ['204', '207']},{'id': '204', 'type': 'attribute', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '207', 'type': 'argument_list', 'children': ['208']},{'id': '208', 'type': 'string', 'children': [], 'value': "'page'"},{'id': '209', 'type': 'expression_statement', 'children': ['210']},{'id': '210', 'type': 'assignment', 'children': ['211', '214']},{'id': '211', 'type': 'subscript', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '213', 'type': 'string', 'children': [], 'value': "'authors'"},{'id': '214', 'type': 'list', 'children': [], 'value': '[]'},{'id': '215', 'type': 'for_statement', 'children': ['216', '217', '220']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'author'},{'id': '217', 'type': 'subscript', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '219', 'type': 'string', 'children': [], 'value': "'author'"},{'id': '220', 'type': 'block', 'children': ['221', '225', '242', '251', '265']},{'id': '221', 'type': 'expression_statement', 'children': ['222']},{'id': '222', 'type': 'assignment', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'auth'},{'id': '224', 'type': 'dictionary', 'children': []},{'id': '225', 'type': 'expression_statement', 'children': ['226']},{'id': '226', 'type': 'assignment', 'children': ['227', '230']},{'id': '227', 'type': 'subscript', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'auth'},{'id': '229', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '230', 'type': 'call', 'children': ['231', '234']},{'id': '231', 'type': 'attribute', 'children': ['232', '233']},{'id': '232', 'type': 'string', 'children': [], 'value': "' '"},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '234', 'type': 'argument_list', 'children': ['235']},{'id': '235', 'type': 'list', 'children': ['236', '239'], 'value': "[author['given'], author['family']]"},{'id': '236', 'type': 'subscript', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'author'},{'id': '238', 'type': 'string', 'children': [], 'value': "'given'"},{'id': '239', 'type': 'subscript', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'author'},{'id': '241', 'type': 'string', 'children': [], 'value': "'family'"},{'id': '242', 'type': 'expression_statement', 'children': ['243']},{'id': '243', 'type': 'assignment', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'orcid'},{'id': '245', 'type': 'call', 'children': ['246', '249']},{'id': '246', 'type': 'attribute', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'author'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '249', 'type': 'argument_list', 'children': ['250']},{'id': '250', 'type': 'string', 'children': [], 'value': "'ORCID'"},{'id': '251', 'type': 'if_statement', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'orcid'},{'id': '253', 'type': 'block', 'children': ['254']},{'id': '254', 'type': 'expression_statement', 'children': ['255']},{'id': '255', 'type': 'assignment', 'children': ['256', '259']},{'id': '256', 'type': 'subscript', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'auth'},{'id': '258', 'type': 'string', 'children': [], 'value': "'ORCID'"},{'id': '259', 'type': 'call', 'children': ['260', '263']},{'id': '260', 'type': 'attribute', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'orcid'},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'lstrip'},{'id': '263', 'type': 'argument_list', 'children': ['264']},{'id': '264', 'type': 'string', 'children': [], 'value': "'http://orcid.org/'"},{'id': '265', 'type': 'expression_statement', 'children': ['266']},{'id': '266', 'type': 'call', 'children': ['267', '272']},{'id': '267', 'type': 'attribute', 'children': ['268', '271']},{'id': '268', 'type': 'subscript', 'children': ['269', '270']},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '270', 'type': 'string', 'children': [], 'value': "'authors'"},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '272', 'type': 'argument_list', 'children': ['273']},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'auth'},{'id': '274', 'type': 'elif_clause', 'children': ['275', '278']},{'id': '275', 'type': 'comparison_operator', 'children': ['276', '277'], 'value': 'is'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'ref_key'},{'id': '277', 'type': 'None', 'children': []},{'id': '278', 'type': 'block', 'children': ['279', '286', '292']},{'id': '279', 'type': 'expression_statement', 'children': ['280']},{'id': '280', 'type': 'call', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '282', 'type': 'argument_list', 'children': ['283']},{'id': '283', 'type': 'concatenated_string', 'children': ['284', '285']},{'id': '284', 'type': 'string', 'children': [], 'value': "'Missing doi attribute in bibliographyLink. '"},{'id': '285', 'type': 'string', 'children': [], 'value': '\'Setting "detail" key as a fallback; please update to the appropriate fields.\''},{'id': '286', 'type': 'expression_statement', 'children': ['287']},{'id': '287', 'type': 'assignment', 'children': ['288', '291']},{'id': '288', 'type': 'subscript', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '290', 'type': 'string', 'children': [], 'value': "'detail'"},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'ref_key'},{'id': '292', 'type': 'if_statement', 'children': ['293', '301']},{'id': '293', 'type': 'comparison_operator', 'children': ['294', '300'], 'value': '!='},{'id': '294', 'type': 'subscript', 'children': ['295', '298']},{'id': '295', 'type': 'subscript', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '297', 'type': 'string', 'children': [], 'value': "'detail'"},{'id': '298', 'type': 'unary_operator', 'children': ['299'], 'value': '-'},{'id': '299', 'type': 'integer', 'children': [], 'value': '1'},{'id': '300', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '301', 'type': 'block', 'children': ['302']},{'id': '302', 'type': 'expression_statement', 'children': ['303']},{'id': '303', 'type': 'augmented_assignment', 'children': ['304', '307'], 'value': '+='},{'id': '304', 'type': 'subscript', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'reference'},{'id': '306', 'type': 'string', 'children': [], 'value': "'detail'"},{'id': '307', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '308', 'type': 'else_clause', 'children': ['309']},{'id': '309', 'type': 'block', 'children': ['310']},{'id': '310', 'type': 'raise_statement', 'children': ['311']},{'id': '311', 'type': 'call', 'children': ['312', '313']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'MissingAttributeError'},{'id': '313', 'type': 'argument_list', 'children': ['314', '315']},{'id': '314', 'type': 'string', 'children': [], 'value': "'preferredKey'"},{'id': '315', 'type': 'string', 'children': [], 'value': "'bibliographyLink'"},{'id': '316', 'type': 'return_statement', 'children': ['317']},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'reference'} | def get_reference(root):
reference = {}
elem = root.find('bibliographyLink')
if elem is None:
raise MissingElementError('bibliographyLink')
ref_doi = elem.get('doi', None)
ref_key = elem.get('preferredKey', None)
if ref_doi is not None:
try:
ref = crossref_api.works(ids=ref_doi)['message']
except (HTTPError, habanero.RequestError, ConnectionError):
if ref_key is None:
raise KeywordError('DOI not found and preferredKey attribute not set')
else:
warn('Missing doi attribute in bibliographyLink or lookup failed. '
'Setting "detail" key as a fallback; please update to the appropriate fields.'
)
reference['detail'] = ref_key
if reference['detail'][-1] != '.':
reference['detail'] += '.'
else:
if ref_key is not None:
warn('Using DOI to obtain reference information, rather than preferredKey.')
reference['doi'] = elem.attrib['doi']
reference['journal'] = ref.get('container-title')[0]
ref_year = ref.get('published-print') or ref.get('published-online')
reference['year'] = int(ref_year['date-parts'][0][0])
reference['volume'] = int(ref.get('volume'))
reference['pages'] = ref.get('page')
reference['authors'] = []
for author in ref['author']:
auth = {}
auth['name'] = ' '.join([author['given'], author['family']])
orcid = author.get('ORCID')
if orcid:
auth['ORCID'] = orcid.lstrip('http://orcid.org/')
reference['authors'].append(auth)
elif ref_key is not None:
warn('Missing doi attribute in bibliographyLink. '
'Setting "detail" key as a fallback; please update to the appropriate fields.'
)
reference['detail'] = ref_key
if reference['detail'][-1] != '.':
reference['detail'] += '.'
else:
raise MissingAttributeError('preferredKey', 'bibliographyLink')
return reference |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'ReSpecTh_to_ChemKED'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '12']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'filename_xml'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'file_author'},{'id': '7', 'type': 'string', 'children': [], 'value': "''"},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'file_author_orcid'},{'id': '10', 'type': 'string', 'children': [], 'value': "''"},{'id': '11', 'type': 'keyword_separator', 'children': []},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'validate'},{'id': '14', 'type': 'False', 'children': []},{'id': '15', 'type': 'block', 'children': ['16', '25', '33', '40', '49', '77', '87', '96', '107', '116', '140', '156', '186', '202', '213', '241', '273', '285']},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'tree'},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'etree'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'parse'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'filename_xml'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '28', 'type': 'call', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'tree'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'getroot'},{'id': '32', 'type': 'argument_list', 'children': []},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'get_file_metadata'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '45']},{'id': '42', 'type': 'subscript', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '44', 'type': 'string', 'children': [], 'value': "'reference'"},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'get_reference'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '56']},{'id': '51', 'type': 'subscript', 'children': ['52', '55']},{'id': '52', 'type': 'subscript', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '54', 'type': 'string', 'children': [], 'value': "'reference'"},{'id': '55', 'type': 'string', 'children': [], 'value': "'detail'"},{'id': '56', 'type': '()', 'children': ['57']},{'id': '57', 'type': 'binary_operator', 'children': ['58', '69'], 'value': '+'},{'id': '58', 'type': 'binary_operator', 'children': ['59', '68'], 'value': '+'},{'id': '59', 'type': 'call', 'children': ['60', '65']},{'id': '60', 'type': 'attribute', 'children': ['61', '64']},{'id': '61', 'type': 'subscript', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '63', 'type': 'string', 'children': [], 'value': "'reference'"},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '65', 'type': 'argument_list', 'children': ['66', '67']},{'id': '66', 'type': 'string', 'children': [], 'value': "'detail'"},{'id': '67', 'type': 'string', 'children': [], 'value': "''"},{'id': '68', 'type': 'string', 'children': [], 'value': "'Converted from ReSpecTh XML file '"},{'id': '69', 'type': 'call', 'children': ['70', '75']},{'id': '70', 'type': 'attribute', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'filename_xml'},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'get_experiment_kind'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '92']},{'id': '89', 'type': 'subscript', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '91', 'type': 'string', 'children': [], 'value': "'common-properties'"},{'id': '92', 'type': 'call', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'get_common_properties'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'assignment', 'children': ['98', '103']},{'id': '98', 'type': 'subscript', 'children': ['99', '102']},{'id': '99', 'type': 'subscript', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '101', 'type': 'string', 'children': [], 'value': "'common-properties'"},{'id': '102', 'type': 'string', 'children': [], 'value': "'ignition-type'"},{'id': '103', 'type': 'call', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'get_ignition_type'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'assignment', 'children': ['109', '112']},{'id': '109', 'type': 'subscript', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '111', 'type': 'string', 'children': [], 'value': "'datapoints'"},{'id': '112', 'type': 'call', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'get_datapoints'},{'id': '114', 'type': 'argument_list', 'children': ['115']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'has_pres_rise'},{'id': '119', 'type': '()', 'children': ['120']},{'id': '120', 'type': 'boolean_operator', 'children': ['121', '126'], 'value': 'or'},{'id': '121', 'type': 'comparison_operator', 'children': ['122', '123'], 'value': 'in'},{'id': '122', 'type': 'string', 'children': [], 'value': "'pressure-rise'"},{'id': '123', 'type': 'subscript', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '125', 'type': 'string', 'children': [], 'value': "'common-properties'"},{'id': '126', 'type': 'call', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '128', 'type': 'argument_list', 'children': ['129']},{'id': '129', 'type': 'list_comprehension', 'children': ['130', '131', '136']},{'id': '130', 'type': 'True', 'children': []},{'id': '131', 'type': 'for_in_clause', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'dp'},{'id': '133', 'type': 'subscript', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '135', 'type': 'string', 'children': [], 'value': "'datapoints'"},{'id': '136', 'type': 'if_clause', 'children': ['137']},{'id': '137', 'type': 'comparison_operator', 'children': ['138', '139'], 'value': 'in'},{'id': '138', 'type': 'string', 'children': [], 'value': "'pressure-rise'"},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'dp'},{'id': '140', 'type': 'if_statement', 'children': ['141', '150']},{'id': '141', 'type': 'boolean_operator', 'children': ['142', '143'], 'value': 'and'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'has_pres_rise'},{'id': '143', 'type': 'comparison_operator', 'children': ['144', '149'], 'value': '=='},{'id': '144', 'type': 'subscript', 'children': ['145', '148']},{'id': '145', 'type': 'subscript', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '147', 'type': 'string', 'children': [], 'value': "'apparatus'"},{'id': '148', 'type': 'string', 'children': [], 'value': "'kind'"},{'id': '149', 'type': 'string', 'children': [], 'value': "'rapid compression machine'"},{'id': '150', 'type': 'block', 'children': ['151']},{'id': '151', 'type': 'raise_statement', 'children': ['152']},{'id': '152', 'type': 'call', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'KeywordError'},{'id': '154', 'type': 'argument_list', 'children': ['155']},{'id': '155', 'type': 'string', 'children': [], 'value': "'Pressure rise cannot be defined for RCM.'"},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'assignment', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'has_vol_hist'},{'id': '159', 'type': 'call', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '161', 'type': 'argument_list', 'children': ['162']},{'id': '162', 'type': 'list_comprehension', 'children': ['163', '171', '176']},{'id': '163', 'type': 'comparison_operator', 'children': ['164', '170'], 'value': '=='},{'id': '164', 'type': 'call', 'children': ['165', '168']},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '168', 'type': 'argument_list', 'children': ['169']},{'id': '169', 'type': 'string', 'children': [], 'value': "'type'"},{'id': '170', 'type': 'string', 'children': [], 'value': "'volume'"},{'id': '171', 'type': 'for_in_clause', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'dp'},{'id': '173', 'type': 'subscript', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '175', 'type': 'string', 'children': [], 'value': "'datapoints'"},{'id': '176', 'type': 'for_in_clause', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '178', 'type': 'call', 'children': ['179', '182']},{'id': '179', 'type': 'attribute', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'dp'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '182', 'type': 'argument_list', 'children': ['183', '184']},{'id': '183', 'type': 'string', 'children': [], 'value': "'time-histories'"},{'id': '184', 'type': 'list', 'children': ['185'], 'value': '[{}]'},{'id': '185', 'type': 'dictionary', 'children': []},{'id': '186', 'type': 'if_statement', 'children': ['187', '196']},{'id': '187', 'type': 'boolean_operator', 'children': ['188', '189'], 'value': 'and'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'has_vol_hist'},{'id': '189', 'type': 'comparison_operator', 'children': ['190', '195'], 'value': '=='},{'id': '190', 'type': 'subscript', 'children': ['191', '194']},{'id': '191', 'type': 'subscript', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '193', 'type': 'string', 'children': [], 'value': "'apparatus'"},{'id': '194', 'type': 'string', 'children': [], 'value': "'kind'"},{'id': '195', 'type': 'string', 'children': [], 'value': "'shock tube'"},{'id': '196', 'type': 'block', 'children': ['197']},{'id': '197', 'type': 'raise_statement', 'children': ['198']},{'id': '198', 'type': 'call', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'KeywordError'},{'id': '200', 'type': 'argument_list', 'children': ['201']},{'id': '201', 'type': 'string', 'children': [], 'value': "'Volume history cannot be defined for shock tube.'"},{'id': '202', 'type': 'if_statement', 'children': ['203', '207']},{'id': '203', 'type': 'boolean_operator', 'children': ['204', '205'], 'value': 'and'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'file_author_orcid'},{'id': '205', 'type': 'not_operator', 'children': ['206']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'file_author'},{'id': '207', 'type': 'block', 'children': ['208']},{'id': '208', 'type': 'raise_statement', 'children': ['209']},{'id': '209', 'type': 'call', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'KeywordError'},{'id': '211', 'type': 'argument_list', 'children': ['212']},{'id': '212', 'type': 'string', 'children': [], 'value': "'If file_author_orcid is specified, file_author must be as well'"},{'id': '213', 'type': 'if_statement', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'file_author'},{'id': '215', 'type': 'block', 'children': ['216', '223', '232']},{'id': '216', 'type': 'expression_statement', 'children': ['217']},{'id': '217', 'type': 'assignment', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'temp_author'},{'id': '219', 'type': 'dictionary', 'children': ['220']},{'id': '220', 'type': 'pair', 'children': ['221', '222']},{'id': '221', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'file_author'},{'id': '223', 'type': 'if_statement', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'file_author_orcid'},{'id': '225', 'type': 'block', 'children': ['226']},{'id': '226', 'type': 'expression_statement', 'children': ['227']},{'id': '227', 'type': 'assignment', 'children': ['228', '231']},{'id': '228', 'type': 'subscript', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'temp_author'},{'id': '230', 'type': 'string', 'children': [], 'value': "'ORCID'"},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'file_author_orcid'},{'id': '232', 'type': 'expression_statement', 'children': ['233']},{'id': '233', 'type': 'call', 'children': ['234', '239']},{'id': '234', 'type': 'attribute', 'children': ['235', '238']},{'id': '235', 'type': 'subscript', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '237', 'type': 'string', 'children': [], 'value': "'file-authors'"},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '239', 'type': 'argument_list', 'children': ['240']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'temp_author'},{'id': '241', 'type': 'for_statement', 'children': ['242', '243', '252']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '243', 'type': 'call', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '245', 'type': 'argument_list', 'children': ['246']},{'id': '246', 'type': 'call', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '248', 'type': 'argument_list', 'children': ['249']},{'id': '249', 'type': 'subscript', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '251', 'type': 'string', 'children': [], 'value': "'datapoints'"},{'id': '252', 'type': 'block', 'children': ['253']},{'id': '253', 'type': 'for_statement', 'children': ['254', '255', '258']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '255', 'type': 'subscript', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '257', 'type': 'string', 'children': [], 'value': "'common-properties'"},{'id': '258', 'type': 'block', 'children': ['259']},{'id': '259', 'type': 'expression_statement', 'children': ['260']},{'id': '260', 'type': 'assignment', 'children': ['261', '268']},{'id': '261', 'type': 'subscript', 'children': ['262', '267']},{'id': '262', 'type': 'subscript', 'children': ['263', '266']},{'id': '263', 'type': 'subscript', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '265', 'type': 'string', 'children': [], 'value': "'datapoints'"},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '268', 'type': 'subscript', 'children': ['269', '272']},{'id': '269', 'type': 'subscript', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '271', 'type': 'string', 'children': [], 'value': "'common-properties'"},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '273', 'type': 'if_statement', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'validate'},{'id': '275', 'type': 'block', 'children': ['276']},{'id': '276', 'type': 'expression_statement', 'children': ['277']},{'id': '277', 'type': 'call', 'children': ['278', '281']},{'id': '278', 'type': 'attribute', 'children': ['279', '280']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'chemked'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'ChemKED'},{'id': '281', 'type': 'argument_list', 'children': ['282']},{'id': '282', 'type': 'keyword_argument', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'dict_input'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '285', 'type': 'return_statement', 'children': ['286']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'properties'} | def ReSpecTh_to_ChemKED(filename_xml, file_author='', file_author_orcid='', *, validate=False):
tree = etree.parse(filename_xml)
root = tree.getroot()
properties = get_file_metadata(root)
properties['reference'] = get_reference(root)
properties['reference']['detail'] = (properties['reference'].get('detail', '') +
'Converted from ReSpecTh XML file ' +
os.path.basename(filename_xml)
)
properties.update(get_experiment_kind(root))
properties['common-properties'] = get_common_properties(root)
properties['common-properties']['ignition-type'] = get_ignition_type(root)
properties['datapoints'] = get_datapoints(root)
has_pres_rise = ('pressure-rise' in properties['common-properties'] or
any([True for dp in properties['datapoints'] if 'pressure-rise' in dp])
)
if has_pres_rise and properties['apparatus']['kind'] == 'rapid compression machine':
raise KeywordError('Pressure rise cannot be defined for RCM.')
has_vol_hist = any(
[t.get('type') == 'volume' for dp in properties['datapoints']
for t in dp.get('time-histories', [{}])]
)
if has_vol_hist and properties['apparatus']['kind'] == 'shock tube':
raise KeywordError('Volume history cannot be defined for shock tube.')
if file_author_orcid and not file_author:
raise KeywordError('If file_author_orcid is specified, file_author must be as well')
if file_author:
temp_author = {'name': file_author}
if file_author_orcid:
temp_author['ORCID'] = file_author_orcid
properties['file-authors'].append(temp_author)
for idx in range(len(properties['datapoints'])):
for prop in properties['common-properties']:
properties['datapoints'][idx][prop] = properties['common-properties'][prop]
if validate:
chemked.ChemKED(dict_input=properties)
return properties |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_cantera_composition_string'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'species_conversion'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '47', '233']},{'id': '9', 'type': 'if_statement', 'children': ['10', '17', '22', '33']},{'id': '10', 'type': 'comparison_operator', 'children': ['11', '14'], 'value': 'in'},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'composition_type'},{'id': '14', 'type': 'list', 'children': ['15', '16'], 'value': "['mole fraction', 'mass fraction']"},{'id': '15', 'type': 'string', 'children': [], 'value': "'mole fraction'"},{'id': '16', 'type': 'string', 'children': [], 'value': "'mass fraction'"},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'factor'},{'id': '21', 'type': 'float', 'children': [], 'value': '1.0'},{'id': '22', 'type': 'elif_clause', 'children': ['23', '28']},{'id': '23', 'type': 'comparison_operator', 'children': ['24', '27'], 'value': '=='},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'composition_type'},{'id': '27', 'type': 'string', 'children': [], 'value': "'mole percent'"},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'factor'},{'id': '32', 'type': 'float', 'children': [], 'value': '100.0'},{'id': '33', 'type': 'else_clause', 'children': ['34']},{'id': '34', 'type': 'block', 'children': ['35']},{'id': '35', 'type': 'raise_statement', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'call', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'string', 'children': [], 'value': "'Unknown composition type: {}'"},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'composition_type'},{'id': '47', 'type': 'if_statement', 'children': ['48', '51', '80']},{'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': 'is'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'species_conversion'},{'id': '50', 'type': 'None', 'children': []},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'comps'},{'id': '55', 'type': 'list_comprehension', 'children': ['56', '71']},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'string', 'children': [], 'value': "'{!s}:{:.4e}'"},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '60', 'type': 'argument_list', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'species_name'},{'id': '64', 'type': 'binary_operator', 'children': ['65', '70'], 'value': '/'},{'id': '65', 'type': 'attribute', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'amount'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'magnitude'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'factor'},{'id': '71', 'type': 'for_in_clause', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '73', 'type': 'call', 'children': ['74', '79']},{'id': '74', 'type': 'attribute', 'children': ['75', '78']},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'composition'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '79', 'type': 'argument_list', 'children': []},{'id': '80', 'type': 'else_clause', 'children': ['81']},{'id': '81', 'type': 'block', 'children': ['82', '86', '215']},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'assignment', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'comps'},{'id': '85', 'type': 'list', 'children': [], 'value': '[]'},{'id': '86', 'type': 'for_statement', 'children': ['87', '88', '95']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '88', 'type': 'call', 'children': ['89', '94']},{'id': '89', 'type': 'attribute', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'composition'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '94', 'type': 'argument_list', 'children': []},{'id': '95', 'type': 'block', 'children': ['96', '106', '122', '132']},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'assignment', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'amount'},{'id': '99', 'type': 'binary_operator', 'children': ['100', '105'], 'value': '/'},{'id': '100', 'type': 'attribute', 'children': ['101', '104']},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'amount'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'magnitude'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'factor'},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'assignment', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'idents'},{'id': '109', 'type': 'list_comprehension', 'children': ['110', '116']},{'id': '110', 'type': 'call', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '112', 'type': 'argument_list', 'children': ['113', '114', '115']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '115', 'type': 'False', 'children': []},{'id': '116', 'type': 'for_in_clause', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '118', 'type': 'list', 'children': ['119', '120', '121'], 'value': "['species_name', 'InChI', 'SMILES']"},{'id': '119', 'type': 'string', 'children': [], 'value': "'species_name'"},{'id': '120', 'type': 'string', 'children': [], 'value': "'InChI'"},{'id': '121', 'type': 'string', 'children': [], 'value': "'SMILES'"},{'id': '122', 'type': 'expression_statement', 'children': ['123']},{'id': '123', 'type': 'assignment', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'present'},{'id': '125', 'type': 'list_comprehension', 'children': ['126', '129']},{'id': '126', 'type': 'comparison_operator', 'children': ['127', '128'], 'value': 'in'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'species_conversion'},{'id': '129', 'type': 'for_in_clause', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'idents'},{'id': '132', 'type': 'if_statement', 'children': ['133', '138', '154']},{'id': '133', 'type': 'not_operator', 'children': ['134']},{'id': '134', 'type': 'call', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '136', 'type': 'argument_list', 'children': ['137']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'present'},{'id': '138', 'type': 'block', 'children': ['139']},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'call', 'children': ['141', '144']},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'comps'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'call', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'string', 'children': [], 'value': "'{!s}:{:.4e}'"},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '149', 'type': 'argument_list', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'species_name'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'amount'},{'id': '154', 'type': 'else_clause', 'children': ['155']},{'id': '155', 'type': 'block', 'children': ['156', '182', '193', '202']},{'id': '156', 'type': 'if_statement', 'children': ['157', '169']},{'id': '157', 'type': 'comparison_operator', 'children': ['158', '168'], 'value': '>'},{'id': '158', 'type': 'call', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'list_comprehension', 'children': ['162', '163', '166']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '163', 'type': 'for_in_clause', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'present'},{'id': '166', 'type': 'if_clause', 'children': ['167']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '168', 'type': 'integer', 'children': [], 'value': '1'},{'id': '169', 'type': 'block', 'children': ['170']},{'id': '170', 'type': 'raise_statement', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'call', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'string', 'children': [], 'value': "'More than one conversion present for species {}'"},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '178', 'type': 'argument_list', 'children': ['179']},{'id': '179', 'type': 'attribute', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'species_name'},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'ident'},{'id': '185', 'type': 'subscript', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'idents'},{'id': '187', 'type': 'call', 'children': ['188', '191']},{'id': '188', 'type': 'attribute', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'present'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '191', 'type': 'argument_list', 'children': ['192']},{'id': '192', 'type': 'True', 'children': []},{'id': '193', 'type': 'expression_statement', 'children': ['194']},{'id': '194', 'type': 'assignment', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'species_replacement_name'},{'id': '196', 'type': 'call', 'children': ['197', '200']},{'id': '197', 'type': 'attribute', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'species_conversion'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '200', 'type': 'argument_list', 'children': ['201']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'ident'},{'id': '202', 'type': 'expression_statement', 'children': ['203']},{'id': '203', 'type': 'call', 'children': ['204', '207']},{'id': '204', 'type': 'attribute', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'comps'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '207', 'type': 'argument_list', 'children': ['208']},{'id': '208', 'type': 'call', 'children': ['209', '212']},{'id': '209', 'type': 'attribute', 'children': ['210', '211']},{'id': '210', 'type': 'string', 'children': [], 'value': "'{!s}:{:.4e}'"},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '212', 'type': 'argument_list', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'species_replacement_name'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'amount'},{'id': '215', 'type': 'if_statement', 'children': ['216', '222']},{'id': '216', 'type': 'comparison_operator', 'children': ['217', '221'], 'value': '>'},{'id': '217', 'type': 'call', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '219', 'type': 'argument_list', 'children': ['220']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'species_conversion'},{'id': '221', 'type': 'integer', 'children': [], 'value': '0'},{'id': '222', 'type': 'block', 'children': ['223']},{'id': '223', 'type': 'raise_statement', 'children': ['224']},{'id': '224', 'type': 'call', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '226', 'type': 'argument_list', 'children': ['227']},{'id': '227', 'type': 'call', 'children': ['228', '231']},{'id': '228', 'type': 'attribute', 'children': ['229', '230']},{'id': '229', 'type': 'string', 'children': [], 'value': "'Unknown species in conversion: {}'"},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '231', 'type': 'argument_list', 'children': ['232']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'species_conversion'},{'id': '233', 'type': 'return_statement', 'children': ['234']},{'id': '234', 'type': 'call', 'children': ['235', '238']},{'id': '235', 'type': 'attribute', 'children': ['236', '237']},{'id': '236', 'type': 'string', 'children': [], 'value': "', '"},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '238', 'type': 'argument_list', 'children': ['239']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'comps'} | def get_cantera_composition_string(self, species_conversion=None):
if self.composition_type in ['mole fraction', 'mass fraction']:
factor = 1.0
elif self.composition_type == 'mole percent':
factor = 100.0
else:
raise ValueError('Unknown composition type: {}'.format(self.composition_type))
if species_conversion is None:
comps = ['{!s}:{:.4e}'.format(c.species_name,
c.amount.magnitude/factor) for c in self.composition.values()]
else:
comps = []
for c in self.composition.values():
amount = c.amount.magnitude/factor
idents = [getattr(c, s, False) for s in ['species_name', 'InChI', 'SMILES']]
present = [i in species_conversion for i in idents]
if not any(present):
comps.append('{!s}:{:.4e}'.format(c.species_name, amount))
else:
if len([i for i in present if i]) > 1:
raise ValueError('More than one conversion present for species {}'.format(
c.species_name))
ident = idents[present.index(True)]
species_replacement_name = species_conversion.pop(ident)
comps.append('{!s}:{:.4e}'.format(species_replacement_name, amount))
if len(species_conversion) > 0:
raise ValueError('Unknown species in conversion: {}'.format(species_conversion))
return ', '.join(comps) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'compare_name'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'family_name'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'question_name'},{'id': '7', 'type': 'block', 'children': ['8', '16', '24', '32', '65', '75', '85', '95', '112', '132', '149', '156', '178', '268', '307', '346', '397']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '11', 'type': 'call', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '15', 'type': 'argument_list', 'children': []},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'family_name'},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'family_name'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '23', 'type': 'argument_list', 'children': []},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'question_name'},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'question_name'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '31', 'type': 'argument_list', 'children': []},{'id': '32', 'type': 'if_statement', 'children': ['33', '36']},{'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': 'in'},{'id': '34', 'type': 'string', 'children': [], 'value': "','"},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'question_name'},{'id': '36', 'type': 'block', 'children': ['37', '46', '52']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'question_name'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'string', 'children': [], 'value': "','"},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '51', 'type': 'argument_list', 'children': []},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'question_name'},{'id': '55', 'type': 'call', 'children': ['56', '64']},{'id': '56', 'type': 'attribute', 'children': ['57', '63']},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'string', 'children': [], 'value': "' '"},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '64', 'type': 'argument_list', 'children': []},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'question_name'},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'question_name'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '72', 'type': 'argument_list', 'children': ['73', '74']},{'id': '73', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '74', 'type': 'string', 'children': [], 'value': "''"},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '82', 'type': 'argument_list', 'children': ['83', '84']},{'id': '83', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '84', 'type': 'string', 'children': [], 'value': "''"},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'family_name'},{'id': '88', 'type': 'call', 'children': ['89', '92']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'family_name'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '92', 'type': 'argument_list', 'children': ['93', '94']},{'id': '93', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '94', 'type': 'string', 'children': [], 'value': "''"},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'call', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '103', 'type': 'argument_list', 'children': ['104', '105']},{'id': '104', 'type': 'None', 'children': []},{'id': '105', 'type': 'call', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '109', 'type': 'argument_list', 'children': ['110', '111']},{'id': '110', 'type': 'string', 'children': [], 'value': 'r"[, \\-.]+"'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'num_family_names'},{'id': '115', 'type': 'call', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '117', 'type': 'argument_list', 'children': ['118']},{'id': '118', 'type': 'call', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '120', 'type': 'argument_list', 'children': ['121']},{'id': '121', 'type': 'call', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '123', 'type': 'argument_list', 'children': ['124', '125']},{'id': '124', 'type': 'None', 'children': []},{'id': '125', 'type': 'call', 'children': ['126', '129']},{'id': '126', 'type': 'attribute', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '129', 'type': 'argument_list', 'children': ['130', '131']},{'id': '130', 'type': 'string', 'children': [], 'value': '"[, .]+"'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'family_name'},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '135', 'type': 'call', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '137', 'type': 'argument_list', 'children': ['138']},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '140', 'type': 'argument_list', 'children': ['141', '142']},{'id': '141', 'type': 'None', 'children': []},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '146', 'type': 'argument_list', 'children': ['147', '148']},{'id': '147', 'type': 'string', 'children': [], 'value': 'r"[, \\-.]+"'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'question_name'},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'assignment', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '152', 'type': 'list', 'children': ['153'], 'value': '[name_split[0]]'},{'id': '153', 'type': 'subscript', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '155', 'type': 'integer', 'children': [], 'value': '0'},{'id': '156', 'type': 'if_statement', 'children': ['157', '163']},{'id': '157', 'type': 'comparison_operator', 'children': ['158', '162'], 'value': '>'},{'id': '158', 'type': 'call', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '162', 'type': 'integer', 'children': [], 'value': '2'},{'id': '163', 'type': 'block', 'children': ['164']},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'augmented_assignment', 'children': ['166', '167'], 'value': '+='},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '167', 'type': 'list_comprehension', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '169', 'type': 'for_in_clause', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '171', 'type': 'subscript', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '173', 'type': 'slice', 'children': ['174', '175', '176']},{'id': '174', 'type': 'integer', 'children': [], 'value': '1'},{'id': '175', 'type': 'colon', 'children': []},{'id': '176', 'type': 'unary_operator', 'children': ['177'], 'value': '-'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'num_family_names'},{'id': '178', 'type': 'if_statement', 'children': ['179', '195', '227']},{'id': '179', 'type': 'boolean_operator', 'children': ['180', '186'], 'value': 'and'},{'id': '180', 'type': 'comparison_operator', 'children': ['181', '185'], 'value': '>'},{'id': '181', 'type': 'call', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '183', 'type': 'argument_list', 'children': ['184']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '185', 'type': 'integer', 'children': [], 'value': '1'},{'id': '186', 'type': 'comparison_operator', 'children': ['187', '191'], 'value': '=='},{'id': '187', 'type': 'call', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '189', 'type': 'argument_list', 'children': ['190']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '191', 'type': 'call', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '193', 'type': 'argument_list', 'children': ['194']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '195', 'type': 'block', 'children': ['196']},{'id': '196', 'type': 'for_statement', 'children': ['197', '198', '206']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '198', 'type': 'call', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '200', 'type': 'argument_list', 'children': ['201', '202']},{'id': '201', 'type': 'integer', 'children': [], 'value': '1'},{'id': '202', 'type': 'call', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '204', 'type': 'argument_list', 'children': ['205']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '206', 'type': 'block', 'children': ['207', '217']},{'id': '207', 'type': 'expression_statement', 'children': ['208']},{'id': '208', 'type': 'assignment', 'children': ['209', '212']},{'id': '209', 'type': 'subscript', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '212', 'type': 'subscript', 'children': ['213', '216']},{'id': '213', 'type': 'subscript', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '216', 'type': 'integer', 'children': [], 'value': '0'},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'assignment', 'children': ['219', '222']},{'id': '219', 'type': 'subscript', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '222', 'type': 'subscript', 'children': ['223', '226']},{'id': '223', 'type': 'subscript', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '226', 'type': 'integer', 'children': [], 'value': '0'},{'id': '227', 'type': 'elif_clause', 'children': ['228', '237']},{'id': '228', 'type': 'comparison_operator', 'children': ['229', '233'], 'value': '!='},{'id': '229', 'type': 'call', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '231', 'type': 'argument_list', 'children': ['232']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '233', 'type': 'call', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '235', 'type': 'argument_list', 'children': ['236']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '237', 'type': 'block', 'children': ['238', '252', '260']},{'id': '238', 'type': 'expression_statement', 'children': ['239']},{'id': '239', 'type': 'assignment', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'min_names'},{'id': '241', 'type': 'call', 'children': ['242', '243']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '243', 'type': 'argument_list', 'children': ['244', '248']},{'id': '244', 'type': 'call', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '246', 'type': 'argument_list', 'children': ['247']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '248', 'type': 'call', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '250', 'type': 'argument_list', 'children': ['251']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '252', 'type': 'expression_statement', 'children': ['253']},{'id': '253', 'type': 'assignment', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '255', 'type': 'subscript', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '257', 'type': 'slice', 'children': ['258', '259']},{'id': '258', 'type': 'colon', 'children': []},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'min_names'},{'id': '260', 'type': 'expression_statement', 'children': ['261']},{'id': '261', 'type': 'assignment', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '263', 'type': 'subscript', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '265', 'type': 'slice', 'children': ['266', '267']},{'id': '266', 'type': 'colon', 'children': []},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'min_names'},{'id': '268', 'type': 'if_statement', 'children': ['269', '286']},{'id': '269', 'type': 'boolean_operator', 'children': ['270', '278'], 'value': 'or'},{'id': '270', 'type': 'comparison_operator', 'children': ['271', '277'], 'value': '=='},{'id': '271', 'type': 'call', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '273', 'type': 'argument_list', 'children': ['274']},{'id': '274', 'type': 'subscript', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '276', 'type': 'integer', 'children': [], 'value': '0'},{'id': '277', 'type': 'integer', 'children': [], 'value': '1'},{'id': '278', 'type': 'comparison_operator', 'children': ['279', '285'], 'value': '=='},{'id': '279', 'type': 'call', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '281', 'type': 'argument_list', 'children': ['282']},{'id': '282', 'type': 'subscript', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '284', 'type': 'integer', 'children': [], 'value': '0'},{'id': '285', 'type': 'integer', 'children': [], 'value': '1'},{'id': '286', 'type': 'block', 'children': ['287', '297']},{'id': '287', 'type': 'expression_statement', 'children': ['288']},{'id': '288', 'type': 'assignment', 'children': ['289', '292']},{'id': '289', 'type': 'subscript', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '291', 'type': 'integer', 'children': [], 'value': '0'},{'id': '292', 'type': 'subscript', 'children': ['293', '296']},{'id': '293', 'type': 'subscript', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '295', 'type': 'integer', 'children': [], 'value': '0'},{'id': '296', 'type': 'integer', 'children': [], 'value': '0'},{'id': '297', 'type': 'expression_statement', 'children': ['298']},{'id': '298', 'type': 'assignment', 'children': ['299', '302']},{'id': '299', 'type': 'subscript', 'children': ['300', '301']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '301', 'type': 'integer', 'children': [], 'value': '0'},{'id': '302', 'type': 'subscript', 'children': ['303', '306']},{'id': '303', 'type': 'subscript', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '305', 'type': 'integer', 'children': [], 'value': '0'},{'id': '306', 'type': 'integer', 'children': [], 'value': '0'},{'id': '307', 'type': 'if_statement', 'children': ['308', '325']},{'id': '308', 'type': 'boolean_operator', 'children': ['309', '317'], 'value': 'or'},{'id': '309', 'type': 'comparison_operator', 'children': ['310', '316'], 'value': '>'},{'id': '310', 'type': 'call', 'children': ['311', '312']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '312', 'type': 'argument_list', 'children': ['313']},{'id': '313', 'type': 'subscript', 'children': ['314', '315']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '315', 'type': 'integer', 'children': [], 'value': '0'},{'id': '316', 'type': 'integer', 'children': [], 'value': '1'},{'id': '317', 'type': 'comparison_operator', 'children': ['318', '324'], 'value': '>'},{'id': '318', 'type': 'call', 'children': ['319', '320']},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '320', 'type': 'argument_list', 'children': ['321']},{'id': '321', 'type': 'subscript', 'children': ['322', '323']},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '323', 'type': 'integer', 'children': [], 'value': '0'},{'id': '324', 'type': 'integer', 'children': [], 'value': '1'},{'id': '325', 'type': 'block', 'children': ['326', '336']},{'id': '326', 'type': 'expression_statement', 'children': ['327']},{'id': '327', 'type': 'assignment', 'children': ['328', '331']},{'id': '328', 'type': 'subscript', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '330', 'type': 'integer', 'children': [], 'value': '0'},{'id': '331', 'type': 'subscript', 'children': ['332', '335']},{'id': '332', 'type': 'subscript', 'children': ['333', '334']},{'id': '333', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '334', 'type': 'integer', 'children': [], 'value': '0'},{'id': '335', 'type': 'integer', 'children': [], 'value': '0'},{'id': '336', 'type': 'expression_statement', 'children': ['337']},{'id': '337', 'type': 'assignment', 'children': ['338', '341']},{'id': '338', 'type': 'subscript', 'children': ['339', '340']},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '340', 'type': 'integer', 'children': [], 'value': '0'},{'id': '341', 'type': 'subscript', 'children': ['342', '345']},{'id': '342', 'type': 'subscript', 'children': ['343', '344']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '344', 'type': 'integer', 'children': [], 'value': '0'},{'id': '345', 'type': 'integer', 'children': [], 'value': '0'},{'id': '346', 'type': 'if_statement', 'children': ['347', '354', '381']},{'id': '347', 'type': 'boolean_operator', 'children': ['348', '351'], 'value': 'and'},{'id': '348', 'type': 'comparison_operator', 'children': ['349', '350'], 'value': '=='},{'id': '349', 'type': 'identifier', 'children': [], 'value': 'num_family_names'},{'id': '350', 'type': 'integer', 'children': [], 'value': '1'},{'id': '351', 'type': 'comparison_operator', 'children': ['352', '353'], 'value': 'in'},{'id': '352', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'family_name'},{'id': '354', 'type': 'block', 'children': ['355', '364']},{'id': '355', 'type': 'expression_statement', 'children': ['356']},{'id': '356', 'type': 'assignment', 'children': ['357', '358']},{'id': '357', 'type': 'identifier', 'children': [], 'value': 'num_hyphen'},{'id': '358', 'type': 'call', 'children': ['359', '362']},{'id': '359', 'type': 'attribute', 'children': ['360', '361']},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'family_name'},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '362', 'type': 'argument_list', 'children': ['363']},{'id': '363', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '364', 'type': 'expression_statement', 'children': ['365']},{'id': '365', 'type': 'assignment', 'children': ['366', '367']},{'id': '366', 'type': 'identifier', 'children': [], 'value': 'family_name_compare'},{'id': '367', 'type': 'call', 'children': ['368', '371']},{'id': '368', 'type': 'attribute', 'children': ['369', '370']},{'id': '369', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '370', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '371', 'type': 'argument_list', 'children': ['372']},{'id': '372', 'type': 'subscript', 'children': ['373', '374']},{'id': '373', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '374', 'type': 'slice', 'children': ['375', '380']},{'id': '375', 'type': 'unary_operator', 'children': ['376'], 'value': '-'},{'id': '376', 'type': '()', 'children': ['377']},{'id': '377', 'type': 'binary_operator', 'children': ['378', '379'], 'value': '+'},{'id': '378', 'type': 'identifier', 'children': [], 'value': 'num_hyphen'},{'id': '379', 'type': 'integer', 'children': [], 'value': '1'},{'id': '380', 'type': 'colon', 'children': []},{'id': '381', 'type': 'else_clause', 'children': ['382']},{'id': '382', 'type': 'block', 'children': ['383']},{'id': '383', 'type': 'expression_statement', 'children': ['384']},{'id': '384', 'type': 'assignment', 'children': ['385', '386']},{'id': '385', 'type': 'identifier', 'children': [], 'value': 'family_name_compare'},{'id': '386', 'type': 'call', 'children': ['387', '390']},{'id': '387', 'type': 'attribute', 'children': ['388', '389']},{'id': '388', 'type': 'string', 'children': [], 'value': "' '"},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '390', 'type': 'argument_list', 'children': ['391']},{'id': '391', 'type': 'subscript', 'children': ['392', '393']},{'id': '392', 'type': 'identifier', 'children': [], 'value': 'name_split'},{'id': '393', 'type': 'slice', 'children': ['394', '396']},{'id': '394', 'type': 'unary_operator', 'children': ['395'], 'value': '-'},{'id': '395', 'type': 'identifier', 'children': [], 'value': 'num_family_names'},{'id': '396', 'type': 'colon', 'children': []},{'id': '397', 'type': 'return_statement', 'children': ['398']},{'id': '398', 'type': 'boolean_operator', 'children': ['399', '402'], 'value': 'and'},{'id': '399', 'type': 'comparison_operator', 'children': ['400', '401'], 'value': '=='},{'id': '400', 'type': 'identifier', 'children': [], 'value': 'given_name'},{'id': '401', 'type': 'identifier', 'children': [], 'value': 'first_name'},{'id': '402', 'type': 'comparison_operator', 'children': ['403', '404'], 'value': '=='},{'id': '403', 'type': 'identifier', 'children': [], 'value': 'family_name'},{'id': '404', 'type': 'identifier', 'children': [], 'value': 'family_name_compare'} | def compare_name(given_name, family_name, question_name):
given_name = given_name.lower()
family_name = family_name.lower()
question_name = question_name.lower()
if ',' in question_name:
name_split = question_name.split(',')
name_split.reverse()
question_name = ' '.join(name_split).strip()
question_name = question_name.replace('.', '')
given_name = given_name.replace('.', '')
family_name = family_name.replace('.', '')
given_name = list(filter(None, re.split(r"[, \-.]+", given_name)))
num_family_names = len(list(filter(None, re.split("[, .]+", family_name))))
name_split = list(filter(None, re.split(r"[, \-.]+", question_name)))
first_name = [name_split[0]]
if len(name_split) > 2:
first_name += [n for n in name_split[1:-num_family_names]]
if len(first_name) > 1 and len(given_name) == len(first_name):
for i in range(1, len(first_name)):
first_name[i] = first_name[i][0]
given_name[i] = given_name[i][0]
elif len(given_name) != len(first_name):
min_names = min(len(given_name), len(first_name))
first_name = first_name[:min_names]
given_name = given_name[:min_names]
if len(first_name[0]) == 1 or len(given_name[0]) == 1:
given_name[0] = given_name[0][0]
first_name[0] = first_name[0][0]
if len(first_name[0]) > 1 or len(given_name[0]) > 1:
given_name[0] = given_name[0][0]
first_name[0] = name_split[0][0]
if num_family_names == 1 and '-' in family_name:
num_hyphen = family_name.count('-')
family_name_compare = '-'.join(name_split[-(num_hyphen + 1):])
else:
family_name_compare = ' '.join(name_split[-num_family_names:])
return given_name == first_name and family_name == family_name_compare |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted_options'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'sort_options'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'list_comprehension', 'children': ['8', '34']},{'id': '8', 'type': 'dictionary', 'children': ['9', '14']},{'id': '9', 'type': 'pair', 'children': ['10', '11']},{'id': '10', 'type': 'string', 'children': [], 'value': "'title'"},{'id': '11', 'type': 'subscript', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '13', 'type': 'string', 'children': [], 'value': "'title'"},{'id': '14', 'type': 'pair', 'children': ['15', '16']},{'id': '15', 'type': 'string', 'children': [], 'value': "'value'"},{'id': '16', 'type': '()', 'children': ['17']},{'id': '17', 'type': 'conditional_expression', 'children': ['18', '24', '33'], 'value': 'if'},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'string', 'children': [], 'value': "'-{0}'"},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '24', 'type': 'comparison_operator', 'children': ['25', '32'], 'value': '=='},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '29', 'type': 'argument_list', 'children': ['30', '31']},{'id': '30', 'type': 'string', 'children': [], 'value': "'default_order'"},{'id': '31', 'type': 'string', 'children': [], 'value': "'asc'"},{'id': '32', 'type': 'string', 'children': [], 'value': "'desc'"},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '34', 'type': 'for_in_clause', 'children': ['35', '38']},{'id': '35', 'type': 'pattern_list', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '40', 'type': 'argument_list', 'children': ['41', '46']},{'id': '41', 'type': 'call', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'sort_options'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '45', 'type': 'argument_list', 'children': []},{'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '48', 'type': 'lambda', 'children': ['49', '51']},{'id': '49', 'type': 'lambda_parameters', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '51', 'type': 'call', 'children': ['52', '57']},{'id': '52', 'type': 'attribute', 'children': ['53', '56']},{'id': '53', 'type': 'subscript', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '55', 'type': 'integer', 'children': [], 'value': '1'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '57', 'type': 'argument_list', 'children': ['58', '59']},{'id': '58', 'type': 'string', 'children': [], 'value': "'order'"},{'id': '59', 'type': 'integer', 'children': [], 'value': '0'} | def sorted_options(sort_options):
return [
{
'title': v['title'],
'value': ('-{0}'.format(k)
if v.get('default_order', 'asc') == 'desc' else k),
}
for k, v in
sorted(sort_options.items(), key=lambda x: x[1].get('order', 0))
] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '24']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'insert_files'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18', '21']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'rootpath'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'directoryInFilter'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'directoryExFilter'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'compileInFilter'},{'id': '14', 'type': 'None', 'children': []},{'id': '15', 'type': 'default_parameter', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'compileExFilter'},{'id': '17', 'type': 'None', 'children': []},{'id': '18', 'type': 'default_parameter', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'contentInFilter'},{'id': '20', 'type': 'None', 'children': []},{'id': '21', 'type': 'default_parameter', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'contentExFilter'},{'id': '23', 'type': 'None', 'children': []},{'id': '24', 'type': 'block', 'children': ['25', '36', '47', '58', '69', '80', '91', '132']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'directoryInFilter'},{'id': '28', 'type': 'conditional_expression', 'children': ['29', '32', '35'], 'value': 'if'},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'DirectoryInFilter'},{'id': '32', 'type': 'comparison_operator', 'children': ['33', '34'], 'value': 'is'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'directoryInFilter'},{'id': '34', 'type': 'None', 'children': []},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'directoryInFilter'},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'directoryExFilter'},{'id': '39', 'type': 'conditional_expression', 'children': ['40', '43', '46'], 'value': 'if'},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'DirectoryExFilter'},{'id': '43', 'type': 'comparison_operator', 'children': ['44', '45'], 'value': 'is'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'directoryExFilter'},{'id': '45', 'type': 'None', 'children': []},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'directoryExFilter'},{'id': '47', 'type': 'expression_statement', 'children': ['48']},{'id': '48', 'type': 'assignment', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'compileInFilter'},{'id': '50', 'type': 'conditional_expression', 'children': ['51', '54', '57'], 'value': 'if'},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'CompileInFilter'},{'id': '54', 'type': 'comparison_operator', 'children': ['55', '56'], 'value': 'is'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'compileInFilter'},{'id': '56', 'type': 'None', 'children': []},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'compileInFilter'},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'compileExFilter'},{'id': '61', 'type': 'conditional_expression', 'children': ['62', '65', '68'], 'value': 'if'},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'CompileExFilter'},{'id': '65', 'type': 'comparison_operator', 'children': ['66', '67'], 'value': 'is'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'compileExFilter'},{'id': '67', 'type': 'None', 'children': []},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'compileExFilter'},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'contentInFilter'},{'id': '72', 'type': 'conditional_expression', 'children': ['73', '76', '79'], 'value': 'if'},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'ContentInFilter'},{'id': '76', 'type': 'comparison_operator', 'children': ['77', '78'], 'value': 'is'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'contentInFilter'},{'id': '78', 'type': 'None', 'children': []},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'contentInFilter'},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'contentExFilter'},{'id': '83', 'type': 'conditional_expression', 'children': ['84', '87', '90'], 'value': 'if'},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'ContentExFilter'},{'id': '87', 'type': 'comparison_operator', 'children': ['88', '89'], 'value': 'is'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'contentExFilter'},{'id': '89', 'type': 'None', 'children': []},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'contentExFilter'},{'id': '91', 'type': 'function_definition', 'children': ['92', '93', '97']},{'id': '92', 'type': 'function_name', 'children': [], 'value': 'filter'},{'id': '93', 'type': 'parameters', 'children': ['94', '95', '96']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'filters'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'explicit'},{'id': '97', 'type': 'block', 'children': ['98', '115']},{'id': '98', 'type': 'if_statement', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'explicit'},{'id': '100', 'type': 'block', 'children': ['101']},{'id': '101', 'type': 'return_statement', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '104', 'type': 'generator_expression', 'children': ['105', '112']},{'id': '105', 'type': 'call', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'fnmatch'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'fnmatch'},{'id': '109', 'type': 'argument_list', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '112', 'type': 'for_in_clause', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'filters'},{'id': '115', 'type': 'return_statement', 'children': ['116']},{'id': '116', 'type': 'boolean_operator', 'children': ['117', '119'], 'value': 'or'},{'id': '117', 'type': 'not_operator', 'children': ['118']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'filters'},{'id': '119', 'type': 'call', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '121', 'type': 'generator_expression', 'children': ['122', '129']},{'id': '122', 'type': 'call', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'fnmatch'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'fnmatch'},{'id': '126', 'type': 'argument_list', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '129', 'type': 'for_in_clause', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'filters'},{'id': '132', 'type': 'for_statement', 'children': ['133', '137', '143']},{'id': '133', 'type': 'pattern_list', 'children': ['134', '135', '136']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'dirnames'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'filenames'},{'id': '137', 'type': 'call', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'walk'},{'id': '141', 'type': 'argument_list', 'children': ['142']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'rootpath'},{'id': '143', 'type': 'block', 'children': ['144', '162']},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'searchdir'},{'id': '147', 'type': 'call', 'children': ['148', '153']},{'id': '148', 'type': 'attribute', 'children': ['149', '152']},{'id': '149', 'type': 'attribute', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'normpath'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '160']},{'id': '155', 'type': 'attribute', 'children': ['156', '159']},{'id': '156', 'type': 'attribute', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'normcase'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '162', 'type': 'if_statement', 'children': ['163', '169', '177']},{'id': '163', 'type': 'call', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '165', 'type': 'argument_list', 'children': ['166', '167', '168']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'searchdir'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'directoryExFilter'},{'id': '168', 'type': 'True', 'children': []},{'id': '169', 'type': 'block', 'children': ['170']},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '176']},{'id': '172', 'type': 'subscript', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'dirnames'},{'id': '174', 'type': 'slice', 'children': ['175']},{'id': '175', 'type': 'colon', 'children': []},{'id': '176', 'type': 'list', 'children': [], 'value': '[]'},{'id': '177', 'type': 'elif_clause', 'children': ['178', '184']},{'id': '178', 'type': 'call', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '180', 'type': 'argument_list', 'children': ['181', '182', '183']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'searchdir'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'directoryInFilter'},{'id': '183', 'type': 'False', 'children': []},{'id': '184', 'type': 'block', 'children': ['185']},{'id': '185', 'type': 'for_statement', 'children': ['186', '187', '200']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'filepath'},{'id': '187', 'type': 'list_comprehension', 'children': ['188', '197']},{'id': '188', 'type': 'call', 'children': ['189', '194']},{'id': '189', 'type': 'attribute', 'children': ['190', '193']},{'id': '190', 'type': 'attribute', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '194', 'type': 'argument_list', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '197', 'type': 'for_in_clause', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'filenames'},{'id': '200', 'type': 'block', 'children': ['201']},{'id': '201', 'type': 'if_statement', 'children': ['202', '216', '226']},{'id': '202', 'type': 'boolean_operator', 'children': ['203', '209'], 'value': 'and'},{'id': '203', 'type': 'call', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '205', 'type': 'argument_list', 'children': ['206', '207', '208']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'filepath'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'compileInFilter'},{'id': '208', 'type': 'False', 'children': []},{'id': '209', 'type': 'not_operator', 'children': ['210']},{'id': '210', 'type': 'call', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '212', 'type': 'argument_list', 'children': ['213', '214', '215']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'filepath'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'compileExFilter'},{'id': '215', 'type': 'True', 'children': []},{'id': '216', 'type': 'block', 'children': ['217']},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'call', 'children': ['219', '224']},{'id': '219', 'type': 'attribute', 'children': ['220', '223']},{'id': '220', 'type': 'attribute', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'CompileFiles'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '224', 'type': 'argument_list', 'children': ['225']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'filepath'},{'id': '226', 'type': 'elif_clause', 'children': ['227', '241']},{'id': '227', 'type': 'boolean_operator', 'children': ['228', '234'], 'value': 'and'},{'id': '228', 'type': 'call', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '230', 'type': 'argument_list', 'children': ['231', '232', '233']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'filepath'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'contentInFilter'},{'id': '233', 'type': 'False', 'children': []},{'id': '234', 'type': 'not_operator', 'children': ['235']},{'id': '235', 'type': 'call', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '237', 'type': 'argument_list', 'children': ['238', '239', '240']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'filepath'},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'contentExFilter'},{'id': '240', 'type': 'True', 'children': []},{'id': '241', 'type': 'block', 'children': ['242']},{'id': '242', 'type': 'expression_statement', 'children': ['243']},{'id': '243', 'type': 'call', 'children': ['244', '249']},{'id': '244', 'type': 'attribute', 'children': ['245', '248']},{'id': '245', 'type': 'attribute', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'ContentFiles'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '249', 'type': 'argument_list', 'children': ['250']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'filepath'} | def insert_files(self, rootpath, directoryInFilter=None, directoryExFilter=None, compileInFilter=None, compileExFilter=None, contentInFilter=None, contentExFilter=None):
directoryInFilter = self.DirectoryInFilter if directoryInFilter is None else directoryInFilter
directoryExFilter = self.DirectoryExFilter if directoryExFilter is None else directoryExFilter
compileInFilter = self.CompileInFilter if compileInFilter is None else compileInFilter
compileExFilter = self.CompileExFilter if compileExFilter is None else compileExFilter
contentInFilter = self.ContentInFilter if contentInFilter is None else contentInFilter
contentExFilter = self.ContentExFilter if contentExFilter is None else contentExFilter
def filter(text, filters, explicit):
if explicit:
return any(fnmatch.fnmatch(text, f) for f in filters)
return not filters or any(fnmatch.fnmatch(text, f) for f in filters)
for root, dirnames, filenames in os.walk(rootpath):
searchdir = os.path.normpath(os.path.normcase(root))
if filter(searchdir, directoryExFilter, True):
dirnames[:] = []
elif filter(searchdir, directoryInFilter, False):
for filepath in [os.path.join(root, filename) for filename in filenames]:
if filter(filepath, compileInFilter, False) and not filter(filepath, compileExFilter, True):
self.CompileFiles.append(filepath)
elif filter(filepath, contentInFilter, False) and not filter(filepath, contentExFilter, True):
self.ContentFiles.append(filepath) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'make_variant'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 're_opts'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'compiled'},{'id': '11', 'type': 'False', 'children': []},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'strict'},{'id': '14', 'type': 'True', 'children': []},{'id': '15', 'type': 'block', 'children': ['16', '19', '31', '42', '57', '65', '72', '85', '111', '117', '126', '132']},{'id': '16', 'type': 'assert_statement', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '18', 'type': 'string', 'children': [], 'value': '"REQUIRE: Non-empty list."'},{'id': '19', 'type': 'if_statement', 'children': ['20', '26']},{'id': '20', 'type': 'comparison_operator', 'children': ['21', '25'], 'value': '=='},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '25', 'type': 'integer', 'children': [], 'value': '1'},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'return_statement', 'children': ['28']},{'id': '28', 'type': 'subscript', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '30', 'type': 'integer', 'children': [], 'value': '0'},{'id': '31', 'type': 'if_statement', 'children': ['32', '35']},{'id': '32', 'type': 'comparison_operator', 'children': ['33', '34'], 'value': 'is'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 're_opts'},{'id': '34', 'type': 'None', 'children': []},{'id': '35', 'type': 'block', 'children': ['36']},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 're_opts'},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'default_re_opts'},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'string', 'children': [], 'value': 'r")|("'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'list_comprehension', 'children': ['51', '54']},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'tc'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '54', 'type': 'for_in_clause', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'tc'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '60', 'type': 'binary_operator', 'children': ['61', '64'], 'value': '+'},{'id': '61', 'type': 'binary_operator', 'children': ['62', '63'], 'value': '+'},{'id': '62', 'type': 'string', 'children': [], 'value': 'r"("'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '64', 'type': 'string', 'children': [], 'value': '")"'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'group_count'},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '72', 'type': 'for_statement', 'children': ['73', '74', '75']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'augmented_assignment', 'children': ['78', '79'], 'value': '+='},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'group_count'},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'pattern_group_count'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '85', 'type': 'if_statement', 'children': ['86', '87', '99']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'compiled'},{'id': '87', 'type': 'block', 'children': ['88']},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'assignment', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'convert_variant'},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '94', 'type': 'identifier', 'children': [], 'value': '__create_convert_variant_compiled'},{'id': '95', 'type': 'argument_list', 'children': ['96', '97', '98']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 're_opts'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'strict'},{'id': '99', 'type': 'else_clause', 'children': ['100']},{'id': '100', 'type': 'block', 'children': ['101']},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'assignment', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'convert_variant'},{'id': '104', 'type': 'call', 'children': ['105', '108']},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '107', 'type': 'identifier', 'children': [], 'value': '__create_convert_variant'},{'id': '108', 'type': 'argument_list', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 're_opts'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'strict'},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'assignment', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'convert_variant'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '117', 'type': 'expression_statement', 'children': ['118']},{'id': '118', 'type': 'assignment', 'children': ['119', '122']},{'id': '119', 'type': 'attribute', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'convert_variant'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '122', 'type': 'call', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '124', 'type': 'argument_list', 'children': ['125']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'convert_variant'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'regex_group_count'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'group_count'},{'id': '132', 'type': 'return_statement', 'children': ['133']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'convert_variant'} | def make_variant(cls, converters, re_opts=None, compiled=False, strict=True):
assert converters, "REQUIRE: Non-empty list."
if len(converters) == 1:
return converters[0]
if re_opts is None:
re_opts = cls.default_re_opts
pattern = r")|(".join([tc.pattern for tc in converters])
pattern = r"("+ pattern + ")"
group_count = len(converters)
for converter in converters:
group_count += pattern_group_count(converter.pattern)
if compiled:
convert_variant = cls.__create_convert_variant_compiled(converters,
re_opts, strict)
else:
convert_variant = cls.__create_convert_variant(re_opts, strict)
convert_variant.pattern = pattern
convert_variant.converters = tuple(converters)
convert_variant.regex_group_count = group_count
return convert_variant |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'info'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '8']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'string', 'children': [], 'value': "''' Returns information on all the registered checkers.\n Sorted by namespace and then name\n :returns a list of CheckerInfo\n '''"},{'id': '8', 'type': 'return_statement', 'children': ['9']},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '11', 'type': 'argument_list', 'children': ['12', '19']},{'id': '12', 'type': 'call', 'children': ['13', '18']},{'id': '13', 'type': 'attribute', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '16', 'type': 'identifier', 'children': [], 'value': '_checkers'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '18', 'type': 'argument_list', 'children': []},{'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '21', 'type': 'lambda', 'children': ['22', '24']},{'id': '22', 'type': 'lambda_parameters', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '24', 'type': 'tuple', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'ns'},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'name'} | def info(self):
''' Returns information on all the registered checkers.
Sorted by namespace and then name
:returns a list of CheckerInfo
'''
return sorted(self._checkers.values(), key=lambda x: (x.ns, x.name)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'extract_from_text'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '11']},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'tools'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'remove_duplicates'},{'id': '11', 'type': 'argument_list', 'children': ['12']},{'id': '12', 'type': 'list_comprehension', 'children': ['13', '16', '24']},{'id': '13', 'type': 'subscript', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '15', 'type': 'integer', 'children': [], 'value': '0'},{'id': '16', 'type': 'for_in_clause', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'REGEX'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'findall'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '24', 'type': 'if_clause', 'children': ['25']},{'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': '!='},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '27', 'type': 'string', 'children': [], 'value': "''"} | def extract_from_text(text):
return tools.remove_duplicates([i[0]
for i in REGEX.findall(text) if i != '']) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_caveat'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'loc'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'block', 'children': ['13', '15', '41', '51', '60', '120', '129', '154', '169', '201']},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'string', 'children': [], 'value': '\'\'\'Add a caveat to the macaroon.\n It encrypts it using the given key pair\n and by looking up the location using the given locator.\n As a special case, if the caveat\'s Location field has the prefix\n "local " the caveat is added as a client self-discharge caveat using\n the public key base64-encoded in the rest of the location. In this\n case, the Condition field must be empty. The resulting third-party\n caveat will encode the condition "true" encrypted with that public\n key.\n @param cav the checkers.Caveat to be added.\n @param key the public key to encrypt third party caveat.\n @param loc locator to find information on third parties when adding\n third party caveats. It is expected to have a third_party_info method\n that will be called with a location string and should return a\n ThirdPartyInfo instance holding the requested information.\n \'\'\''},{'id': '15', 'type': 'if_statement', 'children': ['16', '21']},{'id': '16', 'type': 'comparison_operator', 'children': ['17', '20'], 'value': 'is'},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'location'},{'id': '20', 'type': 'None', 'children': []},{'id': '21', 'type': 'block', 'children': ['22', '40']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'call', 'children': ['24', '29']},{'id': '24', 'type': 'attribute', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '27', 'type': 'identifier', 'children': [], 'value': '_macaroon'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'add_first_party_caveat'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'attribute', 'children': ['31', '39']},{'id': '31', 'type': 'call', 'children': ['32', '37']},{'id': '32', 'type': 'attribute', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'namespace'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'resolve_caveat'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'condition'},{'id': '40', 'type': 'return_statement', 'children': []},{'id': '41', 'type': 'if_statement', 'children': ['42', '45']},{'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': 'is'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '44', 'type': 'None', 'children': []},{'id': '45', 'type': 'block', 'children': ['46']},{'id': '46', 'type': 'raise_statement', 'children': ['47']},{'id': '47', 'type': 'call', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'string', 'children': [], 'value': "'no private key to encrypt third party caveat'"},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'local_info'},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': '_parse_local_location'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'location'},{'id': '60', 'type': 'if_statement', 'children': ['61', '64', '97']},{'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': 'is'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'local_info'},{'id': '63', 'type': 'None', 'children': []},{'id': '64', 'type': 'block', 'children': ['65', '69', '83']},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'local_info'},{'id': '69', 'type': 'if_statement', 'children': ['70', '75']},{'id': '70', 'type': 'comparison_operator', 'children': ['71', '74'], 'value': 'is'},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'condition'},{'id': '74', 'type': 'string', 'children': [], 'value': "''"},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'raise_statement', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'concatenated_string', 'children': ['81', '82']},{'id': '81', 'type': 'string', 'children': [], 'value': "'cannot specify caveat condition in '"},{'id': '82', 'type': 'string', 'children': [], 'value': "'local third-party caveat'"},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'assignment', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '86', 'type': 'call', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'checkers'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'Caveat'},{'id': '90', 'type': 'argument_list', 'children': ['91', '94']},{'id': '91', 'type': 'keyword_argument', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'location'},{'id': '93', 'type': 'string', 'children': [], 'value': "'local'"},{'id': '94', 'type': 'keyword_argument', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'condition'},{'id': '96', 'type': 'string', 'children': [], 'value': "'true'"},{'id': '97', 'type': 'else_clause', 'children': ['98']},{'id': '98', 'type': 'block', 'children': ['99', '109']},{'id': '99', 'type': 'if_statement', 'children': ['100', '103']},{'id': '100', 'type': 'comparison_operator', 'children': ['101', '102'], 'value': 'is'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'loc'},{'id': '102', 'type': 'None', 'children': []},{'id': '103', 'type': 'block', 'children': ['104']},{'id': '104', 'type': 'raise_statement', 'children': ['105']},{'id': '105', 'type': 'call', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '107', 'type': 'argument_list', 'children': ['108']},{'id': '108', 'type': 'string', 'children': [], 'value': "'no locator when adding third party caveat'"},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'assignment', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '112', 'type': 'call', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'loc'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'third_party_info'},{'id': '116', 'type': 'argument_list', 'children': ['117']},{'id': '117', 'type': 'attribute', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'location'},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'assignment', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'root_key'},{'id': '123', 'type': 'call', 'children': ['124', '127']},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'urandom'},{'id': '127', 'type': 'argument_list', 'children': ['128']},{'id': '128', 'type': 'integer', 'children': [], 'value': '24'},{'id': '129', 'type': 'if_statement', 'children': ['130', '137']},{'id': '130', 'type': 'comparison_operator', 'children': ['131', '134'], 'value': '<'},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '133', 'type': 'identifier', 'children': [], 'value': '_version'},{'id': '134', 'type': 'attribute', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'version'},{'id': '137', 'type': 'block', 'children': ['138']},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '141', 'type': 'call', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'ThirdPartyInfo'},{'id': '143', 'type': 'argument_list', 'children': ['144', '149']},{'id': '144', 'type': 'keyword_argument', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'version'},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '148', 'type': 'identifier', 'children': [], 'value': '_version'},{'id': '149', 'type': 'keyword_argument', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'public_key'},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'public_key'},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'assignment', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'caveat_info'},{'id': '157', 'type': 'call', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'encode_caveat'},{'id': '159', 'type': 'argument_list', 'children': ['160', '163', '164', '165', '166']},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'condition'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'root_key'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '168', 'type': 'identifier', 'children': [], 'value': '_namespace'},{'id': '169', 'type': 'if_statement', 'children': ['170', '175', '180']},{'id': '170', 'type': 'comparison_operator', 'children': ['171', '174'], 'value': '<'},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'version'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'VERSION_3'},{'id': '175', 'type': 'block', 'children': ['176']},{'id': '176', 'type': 'expression_statement', 'children': ['177']},{'id': '177', 'type': 'assignment', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'caveat_info'},{'id': '180', 'type': 'else_clause', 'children': ['181']},{'id': '181', 'type': 'block', 'children': ['182', '193']},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '185', 'type': 'call', 'children': ['186', '189']},{'id': '186', 'type': 'attribute', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '188', 'type': 'identifier', 'children': [], 'value': '_new_caveat_id'},{'id': '189', 'type': 'argument_list', 'children': ['190']},{'id': '190', 'type': 'attribute', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '192', 'type': 'identifier', 'children': [], 'value': '_caveat_id_prefix'},{'id': '193', 'type': 'expression_statement', 'children': ['194']},{'id': '194', 'type': 'assignment', 'children': ['195', '200']},{'id': '195', 'type': 'subscript', 'children': ['196', '199']},{'id': '196', 'type': 'attribute', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '198', 'type': 'identifier', 'children': [], 'value': '_caveat_data'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'caveat_info'},{'id': '201', 'type': 'expression_statement', 'children': ['202']},{'id': '202', 'type': 'call', 'children': ['203', '208']},{'id': '203', 'type': 'attribute', 'children': ['204', '207']},{'id': '204', 'type': 'attribute', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '206', 'type': 'identifier', 'children': [], 'value': '_macaroon'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'add_third_party_caveat'},{'id': '208', 'type': 'argument_list', 'children': ['209', '212', '213']},{'id': '209', 'type': 'attribute', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'location'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'root_key'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'id'} | def add_caveat(self, cav, key=None, loc=None):
'''Add a caveat to the macaroon.
It encrypts it using the given key pair
and by looking up the location using the given locator.
As a special case, if the caveat's Location field has the prefix
"local " the caveat is added as a client self-discharge caveat using
the public key base64-encoded in the rest of the location. In this
case, the Condition field must be empty. The resulting third-party
caveat will encode the condition "true" encrypted with that public
key.
@param cav the checkers.Caveat to be added.
@param key the public key to encrypt third party caveat.
@param loc locator to find information on third parties when adding
third party caveats. It is expected to have a third_party_info method
that will be called with a location string and should return a
ThirdPartyInfo instance holding the requested information.
'''
if cav.location is None:
self._macaroon.add_first_party_caveat(
self.namespace.resolve_caveat(cav).condition)
return
if key is None:
raise ValueError(
'no private key to encrypt third party caveat')
local_info = _parse_local_location(cav.location)
if local_info is not None:
info = local_info
if cav.condition is not '':
raise ValueError(
'cannot specify caveat condition in '
'local third-party caveat')
cav = checkers.Caveat(location='local', condition='true')
else:
if loc is None:
raise ValueError(
'no locator when adding third party caveat')
info = loc.third_party_info(cav.location)
root_key = os.urandom(24)
if self._version < info.version:
info = ThirdPartyInfo(
version=self._version,
public_key=info.public_key,
)
caveat_info = encode_caveat(
cav.condition, root_key, info, key, self._namespace)
if info.version < VERSION_3:
id = caveat_info
else:
id = self._new_caveat_id(self._caveat_id_prefix)
self._caveat_data[id] = caveat_info
self._macaroon.add_third_party_caveat(cav.location, root_key, id) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_new_caveat_id'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '6', 'type': 'block', 'children': ['7', '9', '15', '39', '48', '56']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'string', 'children': [], 'value': "'''Return a third party caveat id\n This does not duplicate any third party caveat ids already inside\n macaroon. If base is non-empty, it is used as the id prefix.\n @param base bytes\n @return bytes\n '''"},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'bytearray'},{'id': '14', 'type': 'argument_list', 'children': []},{'id': '15', 'type': 'if_statement', 'children': ['16', '22', '30']},{'id': '16', 'type': 'comparison_operator', 'children': ['17', '21'], 'value': '>'},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '21', 'type': 'integer', 'children': [], 'value': '0'},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '30', 'type': 'else_clause', 'children': ['31']},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'VERSION_3'},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': '_caveat_data'},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'caveats'},{'id': '51', 'type': 'attribute', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'identifier', 'children': [], 'value': '_macaroon'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'caveats'},{'id': '56', 'type': 'while_statement', 'children': ['57', '58']},{'id': '57', 'type': 'True', 'children': []},{'id': '58', 'type': 'block', 'children': ['59', '66', '72', '76', '99', '108']},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '62', 'type': 'subscript', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '64', 'type': 'slice', 'children': ['65']},{'id': '65', 'type': 'colon', 'children': []},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'encode_uvarint'},{'id': '69', 'type': 'argument_list', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '75', 'type': 'False', 'children': []},{'id': '76', 'type': 'for_statement', 'children': ['77', '78', '79']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'caveats'},{'id': '79', 'type': 'block', 'children': ['80']},{'id': '80', 'type': 'if_statement', 'children': ['81', '93']},{'id': '81', 'type': '()', 'children': ['82']},{'id': '82', 'type': 'boolean_operator', 'children': ['83', '88'], 'value': 'and'},{'id': '83', 'type': 'comparison_operator', 'children': ['84', '87'], 'value': 'is'},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'verification_key_id'},{'id': '87', 'type': 'None', 'children': []},{'id': '88', 'type': 'comparison_operator', 'children': ['89', '92'], 'value': '=='},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'cav'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'caveat_id'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '93', 'type': 'block', 'children': ['94', '98']},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '97', 'type': 'True', 'children': []},{'id': '98', 'type': 'break_statement', 'children': []},{'id': '99', 'type': 'if_statement', 'children': ['100', '102']},{'id': '100', 'type': 'not_operator', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '102', 'type': 'block', 'children': ['103']},{'id': '103', 'type': 'return_statement', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'bytes'},{'id': '106', 'type': 'argument_list', 'children': ['107']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'augmented_assignment', 'children': ['110', '111'], 'value': '+='},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '111', 'type': 'integer', 'children': [], 'value': '1'} | def _new_caveat_id(self, base):
'''Return a third party caveat id
This does not duplicate any third party caveat ids already inside
macaroon. If base is non-empty, it is used as the id prefix.
@param base bytes
@return bytes
'''
id = bytearray()
if len(base) > 0:
id.extend(base)
else:
id.append(VERSION_3)
i = len(self._caveat_data)
caveats = self._macaroon.caveats
while True:
temp = id[:]
encode_uvarint(i, temp)
found = False
for cav in caveats:
if (cav.verification_key_id is not None
and cav.caveat_id == temp):
found = True
break
if not found:
return bytes(temp)
i += 1 |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'extract_macaroons'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'headers_or_request'},{'id': '5', 'type': 'block', 'children': ['6', '8', '37', '41', '95', '102', '144', '151', '170']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'string', 'children': [], 'value': "''' Returns an array of any macaroons found in the given slice of cookies.\n If the argument implements a get_header method, that will be used\n instead of the get method to retrieve headers.\n @param headers_or_request: dict of headers or a\n urllib.request.Request-like object.\n @return: A list of list of mpy macaroons\n '''"},{'id': '8', 'type': 'function_definition', 'children': ['9', '10', '15']},{'id': '9', 'type': 'function_name', 'children': [], 'value': 'get_header'},{'id': '10', 'type': 'parameters', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '14', 'type': 'None', 'children': []},{'id': '15', 'type': 'block', 'children': ['16']},{'id': '16', 'type': 'try_statement', 'children': ['17', '26']},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'return_statement', 'children': ['19']},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'headers_or_request'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'get_header'},{'id': '23', 'type': 'argument_list', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '26', 'type': 'except_clause', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'AttributeError'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'return_statement', 'children': ['30']},{'id': '30', 'type': 'call', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'headers_or_request'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '34', 'type': 'argument_list', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'mss'},{'id': '40', 'type': 'list', 'children': [], 'value': '[]'},{'id': '41', 'type': 'function_definition', 'children': ['42', '43', '45']},{'id': '42', 'type': 'function_name', 'children': [], 'value': 'add_macaroon'},{'id': '43', 'type': 'parameters', 'children': ['44']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '45', 'type': 'block', 'children': ['46', '75', '88']},{'id': '46', 'type': 'try_statement', 'children': ['47', '71']},{'id': '47', 'type': 'block', 'children': ['48', '57']},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'b64decode'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'data_as_objs'},{'id': '60', 'type': 'call', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'loads'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'call', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'string', 'children': [], 'value': "'utf-8'"},{'id': '71', 'type': 'except_clause', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'return_statement', 'children': []},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'ms'},{'id': '78', 'type': 'list_comprehension', 'children': ['79', '85']},{'id': '79', 'type': 'call', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'macaroon_from_dict'},{'id': '83', 'type': 'argument_list', 'children': ['84']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '85', 'type': 'for_in_clause', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'data_as_objs'},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'mss'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'ms'},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'cookie_header'},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'get_header'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'string', 'children': [], 'value': "'Cookie'"},{'id': '102', 'type': 'if_statement', 'children': ['103', '106']},{'id': '103', 'type': 'comparison_operator', 'children': ['104', '105'], 'value': 'is'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'cookie_header'},{'id': '105', 'type': 'None', 'children': []},{'id': '106', 'type': 'block', 'children': ['107', '113', '123']},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'assignment', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'cs'},{'id': '110', 'type': 'call', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'SimpleCookie'},{'id': '112', 'type': 'argument_list', 'children': []},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'cs'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'load'},{'id': '118', 'type': 'argument_list', 'children': ['119']},{'id': '119', 'type': 'call', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '121', 'type': 'argument_list', 'children': ['122']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'cookie_header'},{'id': '123', 'type': 'for_statement', 'children': ['124', '125', '126']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'cs'},{'id': '126', 'type': 'block', 'children': ['127']},{'id': '127', 'type': 'if_statement', 'children': ['128', '134']},{'id': '128', 'type': 'call', 'children': ['129', '132']},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '132', 'type': 'argument_list', 'children': ['133']},{'id': '133', 'type': 'string', 'children': [], 'value': "'macaroon-'"},{'id': '134', 'type': 'block', 'children': ['135']},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'call', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'add_macaroon'},{'id': '138', 'type': 'argument_list', 'children': ['139']},{'id': '139', 'type': 'attribute', 'children': ['140', '143']},{'id': '140', 'type': 'subscript', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'cs'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'macaroon_header'},{'id': '147', 'type': 'call', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'get_header'},{'id': '149', 'type': 'argument_list', 'children': ['150']},{'id': '150', 'type': 'string', 'children': [], 'value': "'Macaroons'"},{'id': '151', 'type': 'if_statement', 'children': ['152', '155']},{'id': '152', 'type': 'comparison_operator', 'children': ['153', '154'], 'value': 'is'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'macaroon_header'},{'id': '154', 'type': 'None', 'children': []},{'id': '155', 'type': 'block', 'children': ['156']},{'id': '156', 'type': 'for_statement', 'children': ['157', '158', '164']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '158', 'type': 'call', 'children': ['159', '162']},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'macaroon_header'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '162', 'type': 'argument_list', 'children': ['163']},{'id': '163', 'type': 'string', 'children': [], 'value': "','"},{'id': '164', 'type': 'block', 'children': ['165']},{'id': '165', 'type': 'expression_statement', 'children': ['166']},{'id': '166', 'type': 'call', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'add_macaroon'},{'id': '168', 'type': 'argument_list', 'children': ['169']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '170', 'type': 'return_statement', 'children': ['171']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'mss'} | def extract_macaroons(headers_or_request):
''' Returns an array of any macaroons found in the given slice of cookies.
If the argument implements a get_header method, that will be used
instead of the get method to retrieve headers.
@param headers_or_request: dict of headers or a
urllib.request.Request-like object.
@return: A list of list of mpy macaroons
'''
def get_header(key, default=None):
try:
return headers_or_request.get_header(key, default)
except AttributeError:
return headers_or_request.get(key, default)
mss = []
def add_macaroon(data):
try:
data = utils.b64decode(data)
data_as_objs = json.loads(data.decode('utf-8'))
except ValueError:
return
ms = [utils.macaroon_from_dict(x) for x in data_as_objs]
mss.append(ms)
cookie_header = get_header('Cookie')
if cookie_header is not None:
cs = SimpleCookie()
cs.load(str(cookie_header))
for c in cs:
if c.startswith('macaroon-'):
add_macaroon(cs[c].value)
macaroon_header = get_header('Macaroons')
if macaroon_header is not None:
for h in macaroon_header.split(','):
add_macaroon(h)
return mss |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'http_error_handler'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '5', 'type': 'block', 'children': ['6', '50', '87', '302']},{'id': '6', 'type': 'function_definition', 'children': ['7', '8', '10']},{'id': '7', 'type': 'function_name', 'children': [], 'value': 'hrefs_to_resources'},{'id': '8', 'type': 'parameters', 'children': ['9']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'hrefs'},{'id': '10', 'type': 'block', 'children': ['11']},{'id': '11', 'type': 'for_statement', 'children': ['12', '13', '24']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'href'},{'id': '13', 'type': 'call', 'children': ['14', '23']},{'id': '14', 'type': 'attribute', 'children': ['15', '22']},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'hrefs'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '19', 'type': 'argument_list', 'children': ['20', '21']},{'id': '20', 'type': 'string', 'children': [], 'value': "','"},{'id': '21', 'type': 'string', 'children': [], 'value': "''"},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '23', 'type': 'argument_list', 'children': []},{'id': '24', 'type': 'block', 'children': ['25', '41']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '30']},{'id': '27', 'type': 'pattern_list', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'uuid'},{'id': '30', 'type': 'subscript', 'children': ['31', '37']},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'href'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '37', 'type': 'slice', 'children': ['38', '40']},{'id': '38', 'type': 'unary_operator', 'children': ['39'], 'value': '-'},{'id': '39', 'type': 'integer', 'children': [], 'value': '2'},{'id': '40', 'type': 'colon', 'children': []},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'yield', 'children': ['43']},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'Resource'},{'id': '45', 'type': 'argument_list', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'uuid'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'uuid'},{'id': '50', 'type': 'function_definition', 'children': ['51', '52', '54']},{'id': '51', 'type': 'function_name', 'children': [], 'value': 'hrefs_list_to_resources'},{'id': '52', 'type': 'parameters', 'children': ['53']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'hrefs_list'},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'for_statement', 'children': ['56', '57', '61']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'href'},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'eval'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'hrefs_list'},{'id': '61', 'type': 'block', 'children': ['62', '78']},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'assignment', 'children': ['64', '67']},{'id': '64', 'type': 'pattern_list', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'uuid'},{'id': '67', 'type': 'subscript', 'children': ['68', '74']},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'href'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '74', 'type': 'slice', 'children': ['75', '77']},{'id': '75', 'type': 'unary_operator', 'children': ['76'], 'value': '-'},{'id': '76', 'type': 'integer', 'children': [], 'value': '2'},{'id': '77', 'type': 'colon', 'children': []},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'yield', 'children': ['80']},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'Resource'},{'id': '82', 'type': 'argument_list', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '84', 'type': 'keyword_argument', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'uuid'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'uuid'},{'id': '87', 'type': 'decorated_definition', 'children': ['88', '93']},{'id': '88', 'type': 'decorator', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'wraps'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '93', 'type': 'function_definition', 'children': ['94', '95', '101']},{'id': '94', 'type': 'function_name', 'children': [], 'value': 'wrapper'},{'id': '95', 'type': 'parameters', 'children': ['96', '97', '99']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '97', 'type': 'list_splat_pattern', 'children': ['98']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '99', 'type': 'dictionary_splat_pattern', 'children': ['100']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '101', 'type': 'block', 'children': ['102']},{'id': '102', 'type': 'try_statement', 'children': ['103', '113']},{'id': '103', 'type': 'block', 'children': ['104']},{'id': '104', 'type': 'return_statement', 'children': ['105']},{'id': '105', 'type': 'call', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '107', 'type': 'argument_list', 'children': ['108', '109', '111']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '109', 'type': 'list_splat', 'children': ['110']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '111', 'type': 'dictionary_splat', 'children': ['112']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '113', 'type': 'except_clause', 'children': ['114', '118']},{'id': '114', 'type': 'as_pattern', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'HttpError'},{'id': '116', 'type': 'as_pattern_target', 'children': ['117']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '118', 'type': 'block', 'children': ['119', '301']},{'id': '119', 'type': 'if_statement', 'children': ['120', '125', '162']},{'id': '120', 'type': 'comparison_operator', 'children': ['121', '124'], 'value': '=='},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'http_status'},{'id': '124', 'type': 'integer', 'children': [], 'value': '404'},{'id': '125', 'type': 'block', 'children': ['126', '134']},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'call', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'emit'},{'id': '131', 'type': 'argument_list', 'children': ['132', '133']},{'id': '132', 'type': 'string', 'children': [], 'value': "'deleted'"},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '134', 'type': 'if_statement', 'children': ['135', '140', '148']},{'id': '135', 'type': 'call', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '137', 'type': 'argument_list', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'Resource'},{'id': '140', 'type': 'block', 'children': ['141']},{'id': '141', 'type': 'raise_statement', 'children': ['142']},{'id': '142', 'type': 'call', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'ResourceNotFound'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'keyword_argument', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'resource'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '148', 'type': 'elif_clause', 'children': ['149', '154']},{'id': '149', 'type': 'call', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '151', 'type': 'argument_list', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'Collection'},{'id': '154', 'type': 'block', 'children': ['155']},{'id': '155', 'type': 'raise_statement', 'children': ['156']},{'id': '156', 'type': 'call', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'CollectionNotFound'},{'id': '158', 'type': 'argument_list', 'children': ['159']},{'id': '159', 'type': 'keyword_argument', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'collection'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '162', 'type': 'elif_clause', 'children': ['163', '168']},{'id': '163', 'type': 'comparison_operator', 'children': ['164', '167'], 'value': '=='},{'id': '164', 'type': 'attribute', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'http_status'},{'id': '167', 'type': 'integer', 'children': [], 'value': '409'},{'id': '168', 'type': 'block', 'children': ['169', '181', '202', '214', '235', '247', '268', '280']},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'assignment', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '172', 'type': 'call', 'children': ['173', '176']},{'id': '173', 'type': 'attribute', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '176', 'type': 'argument_list', 'children': ['177', '178']},{'id': '177', 'type': 'string', 'children': [], 'value': "r'^Delete when children still present: (\\[[^]]*\\])'"},{'id': '178', 'type': 'attribute', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '181', 'type': 'if_statement', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '183', 'type': 'block', 'children': ['184']},{'id': '184', 'type': 'raise_statement', 'children': ['185']},{'id': '185', 'type': 'call', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'ChildrenExists'},{'id': '187', 'type': 'argument_list', 'children': ['188']},{'id': '188', 'type': 'keyword_argument', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'resources'},{'id': '190', 'type': 'call', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '192', 'type': 'argument_list', 'children': ['193']},{'id': '193', 'type': 'call', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'hrefs_list_to_resources'},{'id': '195', 'type': 'argument_list', 'children': ['196']},{'id': '196', 'type': 'call', 'children': ['197', '200']},{'id': '197', 'type': 'attribute', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '200', 'type': 'argument_list', 'children': ['201']},{'id': '201', 'type': 'integer', 'children': [], 'value': '1'},{'id': '202', 'type': 'expression_statement', 'children': ['203']},{'id': '203', 'type': 'assignment', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '205', 'type': 'call', 'children': ['206', '209']},{'id': '206', 'type': 'attribute', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '209', 'type': 'argument_list', 'children': ['210', '211']},{'id': '210', 'type': 'string', 'children': [], 'value': "r'^Delete when resource still referred: (\\[[^]]*\\])'"},{'id': '211', 'type': 'attribute', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '214', 'type': 'if_statement', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '216', 'type': 'block', 'children': ['217']},{'id': '217', 'type': 'raise_statement', 'children': ['218']},{'id': '218', 'type': 'call', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'BackRefsExists'},{'id': '220', 'type': 'argument_list', 'children': ['221']},{'id': '221', 'type': 'keyword_argument', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'resources'},{'id': '223', 'type': 'call', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '225', 'type': 'argument_list', 'children': ['226']},{'id': '226', 'type': 'call', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'hrefs_list_to_resources'},{'id': '228', 'type': 'argument_list', 'children': ['229']},{'id': '229', 'type': 'call', 'children': ['230', '233']},{'id': '230', 'type': 'attribute', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '233', 'type': 'argument_list', 'children': ['234']},{'id': '234', 'type': 'integer', 'children': [], 'value': '1'},{'id': '235', 'type': 'expression_statement', 'children': ['236']},{'id': '236', 'type': 'assignment', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '238', 'type': 'call', 'children': ['239', '242']},{'id': '239', 'type': 'attribute', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '242', 'type': 'argument_list', 'children': ['243', '244']},{'id': '243', 'type': 'string', 'children': [], 'value': "r'^Children (.*) still exist$'"},{'id': '244', 'type': 'attribute', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '247', 'type': 'if_statement', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '249', 'type': 'block', 'children': ['250']},{'id': '250', 'type': 'raise_statement', 'children': ['251']},{'id': '251', 'type': 'call', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'ChildrenExists'},{'id': '253', 'type': 'argument_list', 'children': ['254']},{'id': '254', 'type': 'keyword_argument', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'resources'},{'id': '256', 'type': 'call', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '258', 'type': 'argument_list', 'children': ['259']},{'id': '259', 'type': 'call', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'hrefs_to_resources'},{'id': '261', 'type': 'argument_list', 'children': ['262']},{'id': '262', 'type': 'call', 'children': ['263', '266']},{'id': '263', 'type': 'attribute', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '266', 'type': 'argument_list', 'children': ['267']},{'id': '267', 'type': 'integer', 'children': [], 'value': '1'},{'id': '268', 'type': 'expression_statement', 'children': ['269']},{'id': '269', 'type': 'assignment', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '271', 'type': 'call', 'children': ['272', '275']},{'id': '272', 'type': 'attribute', 'children': ['273', '274']},{'id': '273', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '275', 'type': 'argument_list', 'children': ['276', '277']},{'id': '276', 'type': 'string', 'children': [], 'value': "r'^Back-References from (.*) still exist$'"},{'id': '277', 'type': 'attribute', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '280', 'type': 'if_statement', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '282', 'type': 'block', 'children': ['283']},{'id': '283', 'type': 'raise_statement', 'children': ['284']},{'id': '284', 'type': 'call', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'BackRefsExists'},{'id': '286', 'type': 'argument_list', 'children': ['287']},{'id': '287', 'type': 'keyword_argument', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'resources'},{'id': '289', 'type': 'call', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '291', 'type': 'argument_list', 'children': ['292']},{'id': '292', 'type': 'call', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'hrefs_to_resources'},{'id': '294', 'type': 'argument_list', 'children': ['295']},{'id': '295', 'type': 'call', 'children': ['296', '299']},{'id': '296', 'type': 'attribute', 'children': ['297', '298']},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '299', 'type': 'argument_list', 'children': ['300']},{'id': '300', 'type': 'integer', 'children': [], 'value': '1'},{'id': '301', 'type': 'raise_statement', 'children': []},{'id': '302', 'type': 'return_statement', 'children': ['303']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'wrapper'} | def http_error_handler(f):
def hrefs_to_resources(hrefs):
for href in hrefs.replace(',', '').split():
type, uuid = href.split('/')[-2:]
yield Resource(type, uuid=uuid)
def hrefs_list_to_resources(hrefs_list):
for href in eval(hrefs_list):
type, uuid = href.split('/')[-2:]
yield Resource(type, uuid=uuid)
@wraps(f)
def wrapper(self, *args, **kwargs):
try:
return f(self, *args, **kwargs)
except HttpError as e:
if e.http_status == 404:
self.emit('deleted', self)
if isinstance(self, Resource):
raise ResourceNotFound(resource=self)
elif isinstance(self, Collection):
raise CollectionNotFound(collection=self)
elif e.http_status == 409:
matches = re.match(r'^Delete when children still present: (\[[^]]*\])', e.message)
if matches:
raise ChildrenExists(
resources=list(hrefs_list_to_resources(matches.group(1))))
matches = re.match(r'^Delete when resource still referred: (\[[^]]*\])', e.message)
if matches:
raise BackRefsExists(
resources=list(hrefs_list_to_resources(matches.group(1))))
matches = re.match(r'^Children (.*) still exist$', e.message)
if matches:
raise ChildrenExists(
resources=list(hrefs_to_resources(matches.group(1))))
matches = re.match(r'^Back-References from (.*) still exist$', e.message)
if matches:
raise BackRefsExists(
resources=list(hrefs_to_resources(matches.group(1))))
raise
return wrapper |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_handle_windows'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '6', 'type': 'block', 'children': ['7', '20', '70', '81', '85', '149', '171', '186', '325', '457']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '10', 'type': 'call', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '13', 'type': 'identifier', 'children': [], 'value': '_keyname'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'GetKey'},{'id': '19', 'type': 'argument_list', 'children': []},{'id': '20', 'type': 'if_statement', 'children': ['21', '32']},{'id': '21', 'type': 'comparison_operator', 'children': ['22', '25'], 'value': 'in'},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'Message'},{'id': '25', 'type': 'binary_operator', 'children': ['26', '29'], 'value': '+'},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'KEYS_UP'},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'KEYS_DOWN'},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'if_statement', 'children': ['34', '39']},{'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': 'in'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'MODIFIERNAMES'},{'id': '39', 'type': 'block', 'children': ['40', '54']},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '47']},{'id': '42', 'type': 'subscript', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '45', 'type': 'identifier', 'children': [], 'value': '_realmodifiers'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '51'], 'value': 'in'},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'Message'},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'KEYS_DOWN'},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '65']},{'id': '56', 'type': 'subscript', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '59', 'type': 'identifier', 'children': [], 'value': '_modifiers'},{'id': '60', 'type': 'subscript', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'MODIFIERNAMES'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '65', 'type': 'subscript', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '68', 'type': 'identifier', 'children': [], 'value': '_realmodifiers'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '70', 'type': 'if_statement', 'children': ['71', '78']},{'id': '71', 'type': 'comparison_operator', 'children': ['72', '75'], 'value': 'not'},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'Message'},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'KEYS_DOWN'},{'id': '78', 'type': 'block', 'children': ['79']},{'id': '79', 'type': 'return_statement', 'children': ['80']},{'id': '80', 'type': 'True', 'children': []},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'assignment', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'is_altgr'},{'id': '84', 'type': 'False', 'children': []},{'id': '85', 'type': 'if_statement', 'children': ['86', '97', '106', '123']},{'id': '86', 'type': 'comparison_operator', 'children': ['87', '94'], 'value': 'in'},{'id': '87', 'type': 'tuple', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'IsExtended'},{'id': '93', 'type': 'argument_list', 'children': []},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'NUMPAD_SPECIALS'},{'id': '97', 'type': 'block', 'children': ['98']},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '101', 'type': 'assignment', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '103', 'type': 'binary_operator', 'children': ['104', '105'], 'value': '+'},{'id': '104', 'type': 'string', 'children': [], 'value': '"Numpad-"'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '106', 'type': 'elif_clause', 'children': ['107', '118']},{'id': '107', 'type': 'boolean_operator', 'children': ['108', '112'], 'value': 'or'},{'id': '108', 'type': 'not_operator', 'children': ['109']},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'Ascii'},{'id': '112', 'type': 'call', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '116', 'type': 'argument_list', 'children': ['117']},{'id': '117', 'type': 'string', 'children': [], 'value': '"Numpad"'},{'id': '118', 'type': 'block', 'children': ['119']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '123', 'type': 'else_clause', 'children': ['124']},{'id': '124', 'type': 'block', 'children': ['125', '135']},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'is_altgr'},{'id': '128', 'type': 'comparison_operator', 'children': ['129', '132'], 'value': 'in'},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'Ascii'},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'ALT_GRS'},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'assignment', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '138', 'type': 'call', 'children': ['139', '142']},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '141', 'type': 'identifier', 'children': [], 'value': '_keyname'},{'id': '142', 'type': 'argument_list', 'children': ['143']},{'id': '143', 'type': 'call', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'unichr'},{'id': '145', 'type': 'argument_list', 'children': ['146']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'Ascii'},{'id': '149', 'type': 'if_statement', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'DEBUG'},{'id': '151', 'type': 'block', 'children': ['152']},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'call', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '155', 'type': 'argument_list', 'children': ['156']},{'id': '156', 'type': 'binary_operator', 'children': ['157', '158'], 'value': '%'},{'id': '157', 'type': 'string', 'children': [], 'value': '"Adding key %s (real %s)"'},{'id': '158', 'type': 'tuple', 'children': ['159', '165']},{'id': '159', 'type': 'call', 'children': ['160', '163']},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '163', 'type': 'argument_list', 'children': ['164']},{'id': '164', 'type': 'string', 'children': [], 'value': '"utf-8"'},{'id': '165', 'type': 'call', 'children': ['166', '169']},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '169', 'type': 'argument_list', 'children': ['170']},{'id': '170', 'type': 'string', 'children': [], 'value': '"utf-8"'},{'id': '171', 'type': 'expression_statement', 'children': ['172']},{'id': '172', 'type': 'call', 'children': ['173', '176']},{'id': '173', 'type': 'attribute', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '175', 'type': 'identifier', 'children': [], 'value': '_output'},{'id': '176', 'type': 'argument_list', 'children': ['177', '180', '183']},{'id': '177', 'type': 'keyword_argument', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '179', 'type': 'string', 'children': [], 'value': '"keys"'},{'id': '180', 'type': 'keyword_argument', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '183', 'type': 'keyword_argument', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'realkey'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '186', 'type': 'if_statement', 'children': ['187', '195']},{'id': '187', 'type': 'boolean_operator', 'children': ['188', '193'], 'value': 'and'},{'id': '188', 'type': 'comparison_operator', 'children': ['189', '190'], 'value': 'not'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'vkey'},{'id': '190', 'type': 'attribute', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'MODIFIERNAMES'},{'id': '193', 'type': 'not_operator', 'children': ['194']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'is_altgr'},{'id': '195', 'type': 'block', 'children': ['196', '218']},{'id': '196', 'type': 'expression_statement', 'children': ['197']},{'id': '197', 'type': 'assignment', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'modifier'},{'id': '199', 'type': 'call', 'children': ['200', '203']},{'id': '200', 'type': 'attribute', 'children': ['201', '202']},{'id': '201', 'type': 'string', 'children': [], 'value': '"-"'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '203', 'type': 'generator_expression', 'children': ['204', '205', '212']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '205', 'type': 'for_in_clause', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '207', 'type': 'list', 'children': ['208', '209', '210', '211'], 'value': '["Ctrl", "Alt", "Shift", "Win"]'},{'id': '208', 'type': 'string', 'children': [], 'value': '"Ctrl"'},{'id': '209', 'type': 'string', 'children': [], 'value': '"Alt"'},{'id': '210', 'type': 'string', 'children': [], 'value': '"Shift"'},{'id': '211', 'type': 'string', 'children': [], 'value': '"Win"'},{'id': '212', 'type': 'if_clause', 'children': ['213']},{'id': '213', 'type': 'subscript', 'children': ['214', '217']},{'id': '214', 'type': 'attribute', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '216', 'type': 'identifier', 'children': [], 'value': '_modifiers'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '218', 'type': 'if_statement', 'children': ['219', '224']},{'id': '219', 'type': 'boolean_operator', 'children': ['220', '221'], 'value': 'and'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'modifier'},{'id': '221', 'type': 'comparison_operator', 'children': ['222', '223'], 'value': '!='},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'modifier'},{'id': '223', 'type': 'string', 'children': [], 'value': '"Shift"'},{'id': '224', 'type': 'block', 'children': ['225', '250', '272', '280', '288', '310']},{'id': '225', 'type': 'if_statement', 'children': ['226', '235']},{'id': '226', 'type': 'boolean_operator', 'children': ['227', '232'], 'value': 'and'},{'id': '227', 'type': 'subscript', 'children': ['228', '231']},{'id': '228', 'type': 'attribute', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '230', 'type': 'identifier', 'children': [], 'value': '_modifiers'},{'id': '231', 'type': 'string', 'children': [], 'value': '"Ctrl"'},{'id': '232', 'type': 'attribute', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'Ascii'},{'id': '235', 'type': 'block', 'children': ['236']},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'assignment', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '239', 'type': 'call', 'children': ['240', '243']},{'id': '240', 'type': 'attribute', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '242', 'type': 'identifier', 'children': [], 'value': '_keyname'},{'id': '243', 'type': 'argument_list', 'children': ['244']},{'id': '244', 'type': 'call', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'unichr'},{'id': '246', 'type': 'argument_list', 'children': ['247']},{'id': '247', 'type': 'attribute', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'KeyID'},{'id': '250', 'type': 'expression_statement', 'children': ['251']},{'id': '251', 'type': 'assignment', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'realmodifier'},{'id': '253', 'type': 'call', 'children': ['254', '257']},{'id': '254', 'type': 'attribute', 'children': ['255', '256']},{'id': '255', 'type': 'string', 'children': [], 'value': '"-"'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '257', 'type': 'generator_expression', 'children': ['258', '259', '270']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '259', 'type': 'for_in_clause', 'children': ['260', '263']},{'id': '260', 'type': 'pattern_list', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '263', 'type': 'call', 'children': ['264', '269']},{'id': '264', 'type': 'attribute', 'children': ['265', '268']},{'id': '265', 'type': 'attribute', 'children': ['266', '267']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '267', 'type': 'identifier', 'children': [], 'value': '_realmodifiers'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '269', 'type': 'argument_list', 'children': []},{'id': '270', 'type': 'if_clause', 'children': ['271']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '272', 'type': 'expression_statement', 'children': ['273']},{'id': '273', 'type': 'assignment', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'realkey'},{'id': '275', 'type': 'binary_operator', 'children': ['276', '277'], 'value': '%'},{'id': '276', 'type': 'string', 'children': [], 'value': '"%s-%s"'},{'id': '277', 'type': 'tuple', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'realmodifier'},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '280', 'type': 'expression_statement', 'children': ['281']},{'id': '281', 'type': 'assignment', 'children': ['282', '283']},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '283', 'type': 'binary_operator', 'children': ['284', '285'], 'value': '%'},{'id': '284', 'type': 'string', 'children': [], 'value': '"%s-%s"'},{'id': '285', 'type': 'tuple', 'children': ['286', '287']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'modifier'},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '288', 'type': 'if_statement', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'DEBUG'},{'id': '290', 'type': 'block', 'children': ['291']},{'id': '291', 'type': 'expression_statement', 'children': ['292']},{'id': '292', 'type': 'call', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '294', 'type': 'argument_list', 'children': ['295']},{'id': '295', 'type': 'binary_operator', 'children': ['296', '297'], 'value': '%'},{'id': '296', 'type': 'string', 'children': [], 'value': '"Adding combo %s (real %s)"'},{'id': '297', 'type': 'tuple', 'children': ['298', '304']},{'id': '298', 'type': 'call', 'children': ['299', '302']},{'id': '299', 'type': 'attribute', 'children': ['300', '301']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '302', 'type': 'argument_list', 'children': ['303']},{'id': '303', 'type': 'string', 'children': [], 'value': '"utf-8"'},{'id': '304', 'type': 'call', 'children': ['305', '308']},{'id': '305', 'type': 'attribute', 'children': ['306', '307']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'realkey'},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '308', 'type': 'argument_list', 'children': ['309']},{'id': '309', 'type': 'string', 'children': [], 'value': '"utf-8"'},{'id': '310', 'type': 'expression_statement', 'children': ['311']},{'id': '311', 'type': 'call', 'children': ['312', '315']},{'id': '312', 'type': 'attribute', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '314', 'type': 'identifier', 'children': [], 'value': '_output'},{'id': '315', 'type': 'argument_list', 'children': ['316', '319', '322']},{'id': '316', 'type': 'keyword_argument', 'children': ['317', '318']},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '318', 'type': 'string', 'children': [], 'value': '"combos"'},{'id': '319', 'type': 'keyword_argument', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '322', 'type': 'keyword_argument', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'realkey'},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'realkey'},{'id': '325', 'type': 'if_statement', 'children': ['326', '327']},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'DEBUG'},{'id': '327', 'type': 'block', 'children': ['328', '335', '349', '363', '377', '391', '405', '417', '429', '441', '453']},{'id': '328', 'type': 'expression_statement', 'children': ['329']},{'id': '329', 'type': 'call', 'children': ['330', '331']},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '331', 'type': 'argument_list', 'children': ['332']},{'id': '332', 'type': 'binary_operator', 'children': ['333', '334'], 'value': '%'},{'id': '333', 'type': 'string', 'children': [], 'value': '"CHARACTER: %r"'},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '335', 'type': 'expression_statement', 'children': ['336']},{'id': '336', 'type': 'call', 'children': ['337', '338']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '338', 'type': 'argument_list', 'children': ['339']},{'id': '339', 'type': 'call', 'children': ['340', '343']},{'id': '340', 'type': 'attribute', 'children': ['341', '342']},{'id': '341', 'type': 'string', 'children': [], 'value': "'GetKey: {0}'"},{'id': '342', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '343', 'type': 'argument_list', 'children': ['344']},{'id': '344', 'type': 'call', 'children': ['345', '348']},{'id': '345', 'type': 'attribute', 'children': ['346', '347']},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'GetKey'},{'id': '348', 'type': 'argument_list', 'children': []},{'id': '349', 'type': 'expression_statement', 'children': ['350']},{'id': '350', 'type': 'call', 'children': ['351', '352']},{'id': '351', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '352', 'type': 'argument_list', 'children': ['353']},{'id': '353', 'type': 'call', 'children': ['354', '357']},{'id': '354', 'type': 'attribute', 'children': ['355', '356']},{'id': '355', 'type': 'string', 'children': [], 'value': "'IsAlt: {0}'"},{'id': '356', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '357', 'type': 'argument_list', 'children': ['358']},{'id': '358', 'type': 'call', 'children': ['359', '362']},{'id': '359', 'type': 'attribute', 'children': ['360', '361']},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'IsAlt'},{'id': '362', 'type': 'argument_list', 'children': []},{'id': '363', 'type': 'expression_statement', 'children': ['364']},{'id': '364', 'type': 'call', 'children': ['365', '366']},{'id': '365', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '366', 'type': 'argument_list', 'children': ['367']},{'id': '367', 'type': 'call', 'children': ['368', '371']},{'id': '368', 'type': 'attribute', 'children': ['369', '370']},{'id': '369', 'type': 'string', 'children': [], 'value': "'IsExtended: {0}'"},{'id': '370', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '371', 'type': 'argument_list', 'children': ['372']},{'id': '372', 'type': 'call', 'children': ['373', '376']},{'id': '373', 'type': 'attribute', 'children': ['374', '375']},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'IsExtended'},{'id': '376', 'type': 'argument_list', 'children': []},{'id': '377', 'type': 'expression_statement', 'children': ['378']},{'id': '378', 'type': 'call', 'children': ['379', '380']},{'id': '379', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '380', 'type': 'argument_list', 'children': ['381']},{'id': '381', 'type': 'call', 'children': ['382', '385']},{'id': '382', 'type': 'attribute', 'children': ['383', '384']},{'id': '383', 'type': 'string', 'children': [], 'value': "'IsInjected: {0}'"},{'id': '384', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '385', 'type': 'argument_list', 'children': ['386']},{'id': '386', 'type': 'call', 'children': ['387', '390']},{'id': '387', 'type': 'attribute', 'children': ['388', '389']},{'id': '388', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'IsInjected'},{'id': '390', 'type': 'argument_list', 'children': []},{'id': '391', 'type': 'expression_statement', 'children': ['392']},{'id': '392', 'type': 'call', 'children': ['393', '394']},{'id': '393', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '394', 'type': 'argument_list', 'children': ['395']},{'id': '395', 'type': 'call', 'children': ['396', '399']},{'id': '396', 'type': 'attribute', 'children': ['397', '398']},{'id': '397', 'type': 'string', 'children': [], 'value': "'IsTransition: {0}'"},{'id': '398', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '399', 'type': 'argument_list', 'children': ['400']},{'id': '400', 'type': 'call', 'children': ['401', '404']},{'id': '401', 'type': 'attribute', 'children': ['402', '403']},{'id': '402', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '403', 'type': 'identifier', 'children': [], 'value': 'IsTransition'},{'id': '404', 'type': 'argument_list', 'children': []},{'id': '405', 'type': 'expression_statement', 'children': ['406']},{'id': '406', 'type': 'call', 'children': ['407', '408']},{'id': '407', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '408', 'type': 'argument_list', 'children': ['409']},{'id': '409', 'type': 'call', 'children': ['410', '413']},{'id': '410', 'type': 'attribute', 'children': ['411', '412']},{'id': '411', 'type': 'string', 'children': [], 'value': "'ASCII: {0}'"},{'id': '412', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '413', 'type': 'argument_list', 'children': ['414']},{'id': '414', 'type': 'attribute', 'children': ['415', '416']},{'id': '415', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '416', 'type': 'identifier', 'children': [], 'value': 'Ascii'},{'id': '417', 'type': 'expression_statement', 'children': ['418']},{'id': '418', 'type': 'call', 'children': ['419', '420']},{'id': '419', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '420', 'type': 'argument_list', 'children': ['421']},{'id': '421', 'type': 'call', 'children': ['422', '425']},{'id': '422', 'type': 'attribute', 'children': ['423', '424']},{'id': '423', 'type': 'string', 'children': [], 'value': "'KeyID: {0}'"},{'id': '424', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '425', 'type': 'argument_list', 'children': ['426']},{'id': '426', 'type': 'attribute', 'children': ['427', '428']},{'id': '427', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '428', 'type': 'identifier', 'children': [], 'value': 'KeyID'},{'id': '429', 'type': 'expression_statement', 'children': ['430']},{'id': '430', 'type': 'call', 'children': ['431', '432']},{'id': '431', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '432', 'type': 'argument_list', 'children': ['433']},{'id': '433', 'type': 'call', 'children': ['434', '437']},{'id': '434', 'type': 'attribute', 'children': ['435', '436']},{'id': '435', 'type': 'string', 'children': [], 'value': "'ScanCode: {0}'"},{'id': '436', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '437', 'type': 'argument_list', 'children': ['438']},{'id': '438', 'type': 'attribute', 'children': ['439', '440']},{'id': '439', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '440', 'type': 'identifier', 'children': [], 'value': 'ScanCode'},{'id': '441', 'type': 'expression_statement', 'children': ['442']},{'id': '442', 'type': 'call', 'children': ['443', '444']},{'id': '443', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '444', 'type': 'argument_list', 'children': ['445']},{'id': '445', 'type': 'call', 'children': ['446', '449']},{'id': '446', 'type': 'attribute', 'children': ['447', '448']},{'id': '447', 'type': 'string', 'children': [], 'value': "'Message: {0}'"},{'id': '448', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '449', 'type': 'argument_list', 'children': ['450']},{'id': '450', 'type': 'attribute', 'children': ['451', '452']},{'id': '451', 'type': 'identifier', 'children': [], 'value': 'event'},{'id': '452', 'type': 'identifier', 'children': [], 'value': 'Message'},{'id': '453', 'type': 'expression_statement', 'children': ['454']},{'id': '454', 'type': 'call', 'children': ['455', '456']},{'id': '455', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '456', 'type': 'argument_list', 'children': []},{'id': '457', 'type': 'return_statement', 'children': ['458']},{'id': '458', 'type': 'True', 'children': []} | def _handle_windows(self, event):
vkey = self._keyname(event.GetKey())
if event.Message in self.KEYS_UP + self.KEYS_DOWN:
if vkey in self.MODIFIERNAMES:
self._realmodifiers[vkey] = event.Message in self.KEYS_DOWN
self._modifiers[self.MODIFIERNAMES[vkey]] = self._realmodifiers[vkey]
if event.Message not in self.KEYS_DOWN:
return True
is_altgr = False
if (vkey, event.IsExtended()) in self.NUMPAD_SPECIALS:
key = vkey = "Numpad-" + vkey
elif not event.Ascii or vkey.startswith("Numpad"):
key = vkey
else:
is_altgr = event.Ascii in self.ALT_GRS
key = self._keyname(unichr(event.Ascii))
if DEBUG: print("Adding key %s (real %s)" % (key.encode("utf-8"), vkey.encode("utf-8")))
self._output(type="keys", key=key, realkey=vkey)
if vkey not in self.MODIFIERNAMES and not is_altgr:
modifier = "-".join(k for k in ["Ctrl", "Alt", "Shift", "Win"]
if self._modifiers[k])
if modifier and modifier != "Shift":
if self._modifiers["Ctrl"] and event.Ascii:
key = self._keyname(unichr(event.KeyID))
realmodifier = "-".join(k for k, v in self._realmodifiers.items() if v)
realkey = "%s-%s" % (realmodifier, key)
key = "%s-%s" % (modifier, key)
if DEBUG: print("Adding combo %s (real %s)" % (key.encode("utf-8"), realkey.encode("utf-8")))
self._output(type="combos", key=key, realkey=realkey)
if DEBUG:
print("CHARACTER: %r" % key)
print('GetKey: {0}'.format(event.GetKey()))
print('IsAlt: {0}'.format(event.IsAlt()))
print('IsExtended: {0}'.format(event.IsExtended()))
print('IsInjected: {0}'.format(event.IsInjected()))
print('IsTransition: {0}'.format(event.IsTransition()))
print('ASCII: {0}'.format(event.Ascii))
print('KeyID: {0}'.format(event.KeyID))
print('ScanCode: {0}'.format(event.ScanCode))
print('Message: {0}'.format(event.Message))
print()
return True |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_handle_linux'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'keycode'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'character'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'press'},{'id': '8', 'type': 'block', 'children': ['9', '15', '25', '52', '70']},{'id': '9', 'type': 'if_statement', 'children': ['10', '13']},{'id': '10', 'type': 'comparison_operator', 'children': ['11', '12'], 'value': 'is'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'character'},{'id': '12', 'type': 'None', 'children': []},{'id': '13', 'type': 'block', 'children': ['14']},{'id': '14', 'type': 'return_statement', 'children': []},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': '_keyname'},{'id': '22', 'type': 'argument_list', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'character'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'keycode'},{'id': '25', 'type': 'if_statement', 'children': ['26', '31']},{'id': '26', 'type': 'comparison_operator', 'children': ['27', '28'], 'value': 'in'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'MODIFIERNAMES'},{'id': '31', 'type': 'block', 'children': ['32', '44']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '43']},{'id': '34', 'type': 'subscript', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '37', 'type': 'identifier', 'children': [], 'value': '_modifiers'},{'id': '38', 'type': 'subscript', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'MODIFIERNAMES'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'press'},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '51']},{'id': '46', 'type': 'subscript', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '49', 'type': 'identifier', 'children': [], 'value': '_realmodifiers'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'press'},{'id': '52', 'type': 'if_statement', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'press'},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '59', 'type': 'identifier', 'children': [], 'value': '_output'},{'id': '60', 'type': 'argument_list', 'children': ['61', '64', '67']},{'id': '61', 'type': 'keyword_argument', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '63', 'type': 'string', 'children': [], 'value': '"keys"'},{'id': '64', 'type': 'keyword_argument', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'realkey'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '70', 'type': 'if_statement', 'children': ['71', '78']},{'id': '71', 'type': 'boolean_operator', 'children': ['72', '73'], 'value': 'and'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'press'},{'id': '73', 'type': 'comparison_operator', 'children': ['74', '75'], 'value': 'not'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'MODIFIERNAMES'},{'id': '78', 'type': 'block', 'children': ['79', '101']},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'modifier'},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'string', 'children': [], 'value': '"-"'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '86', 'type': 'generator_expression', 'children': ['87', '88', '95']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '88', 'type': 'for_in_clause', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '90', 'type': 'list', 'children': ['91', '92', '93', '94'], 'value': '["Ctrl", "Alt", "Shift", "Win"]'},{'id': '91', 'type': 'string', 'children': [], 'value': '"Ctrl"'},{'id': '92', 'type': 'string', 'children': [], 'value': '"Alt"'},{'id': '93', 'type': 'string', 'children': [], 'value': '"Shift"'},{'id': '94', 'type': 'string', 'children': [], 'value': '"Win"'},{'id': '95', 'type': 'if_clause', 'children': ['96']},{'id': '96', 'type': 'subscript', 'children': ['97', '100']},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '99', 'type': 'identifier', 'children': [], 'value': '_modifiers'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '101', 'type': 'if_statement', 'children': ['102', '107']},{'id': '102', 'type': 'boolean_operator', 'children': ['103', '104'], 'value': 'and'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'modifier'},{'id': '104', 'type': 'comparison_operator', 'children': ['105', '106'], 'value': '!='},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'modifier'},{'id': '106', 'type': 'string', 'children': [], 'value': '"Shift"'},{'id': '107', 'type': 'block', 'children': ['108', '130', '138', '146', '168']},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'assignment', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'realmodifier'},{'id': '111', 'type': 'call', 'children': ['112', '115']},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'string', 'children': [], 'value': '"-"'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '115', 'type': 'generator_expression', 'children': ['116', '117', '128']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '117', 'type': 'for_in_clause', 'children': ['118', '121']},{'id': '118', 'type': 'pattern_list', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '121', 'type': 'call', 'children': ['122', '127']},{'id': '122', 'type': 'attribute', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '125', 'type': 'identifier', 'children': [], 'value': '_realmodifiers'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '127', 'type': 'argument_list', 'children': []},{'id': '128', 'type': 'if_clause', 'children': ['129']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'assignment', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'realkey'},{'id': '133', 'type': 'binary_operator', 'children': ['134', '135'], 'value': '%'},{'id': '134', 'type': 'string', 'children': [], 'value': '"%s-%s"'},{'id': '135', 'type': 'tuple', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'realmodifier'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '141', 'type': 'binary_operator', 'children': ['142', '143'], 'value': '%'},{'id': '142', 'type': 'string', 'children': [], 'value': '"%s-%s"'},{'id': '143', 'type': 'tuple', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'modifier'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '146', 'type': 'if_statement', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'DEBUG'},{'id': '148', 'type': 'block', 'children': ['149']},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'binary_operator', 'children': ['154', '155'], 'value': '%'},{'id': '154', 'type': 'string', 'children': [], 'value': '"Adding combo %s (real %s)"'},{'id': '155', 'type': 'tuple', 'children': ['156', '162']},{'id': '156', 'type': 'call', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'string', 'children': [], 'value': '"utf-8"'},{'id': '162', 'type': 'call', 'children': ['163', '166']},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'realkey'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '166', 'type': 'argument_list', 'children': ['167']},{'id': '167', 'type': 'string', 'children': [], 'value': '"utf-8"'},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'call', 'children': ['170', '173']},{'id': '170', 'type': 'attribute', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '172', 'type': 'identifier', 'children': [], 'value': '_output'},{'id': '173', 'type': 'argument_list', 'children': ['174', '177', '180']},{'id': '174', 'type': 'keyword_argument', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '176', 'type': 'string', 'children': [], 'value': '"combos"'},{'id': '177', 'type': 'keyword_argument', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '180', 'type': 'keyword_argument', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'realkey'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'realkey'} | def _handle_linux(self, keycode, character, press):
if character is None: return
key = self._keyname(character, keycode)
if key in self.MODIFIERNAMES:
self._modifiers[self.MODIFIERNAMES[key]] = press
self._realmodifiers[key] = press
if press:
self._output(type="keys", key=key, realkey=key)
if press and key not in self.MODIFIERNAMES:
modifier = "-".join(k for k in ["Ctrl", "Alt", "Shift", "Win"]
if self._modifiers[k])
if modifier and modifier != "Shift":
realmodifier = "-".join(k for k, v in self._realmodifiers.items() if v)
realkey = "%s-%s" % (realmodifier, key)
key = "%s-%s" % (modifier, key)
if DEBUG: print("Adding combo %s (real %s)" % (key.encode("utf-8"), realkey.encode("utf-8")))
self._output(type="combos", key=key, realkey=realkey) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_store_documentation'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'html'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'overwrite'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'quiet'},{'id': '9', 'type': 'block', 'children': ['10', '15', '26', '44', '66', '91', '116', '149', '153', '212', '217', '230', '237', '241', '262', '274']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '13', 'type': 'argument_list', 'children': ['14']},{'id': '14', 'type': 'string', 'children': [], 'value': '"Storing groundwork application documents\\n"'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'binary_operator', 'children': ['20', '21'], 'value': '%'},{'id': '20', 'type': 'string', 'children': [], 'value': '"Application: %s"'},{'id': '21', 'type': 'attribute', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'binary_operator', 'children': ['31', '32'], 'value': '%'},{'id': '31', 'type': 'string', 'children': [], 'value': '"Number of documents: %s\\n"'},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'call', 'children': ['36', '43']},{'id': '36', 'type': 'attribute', 'children': ['37', '42']},{'id': '37', 'type': 'attribute', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '43', 'type': 'argument_list', 'children': []},{'id': '44', 'type': 'if_statement', 'children': ['45', '54']},{'id': '45', 'type': 'not_operator', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '52']},{'id': '47', 'type': 'attribute', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'isabs'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '58', 'type': 'call', 'children': ['59', '64']},{'id': '59', 'type': 'attribute', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'abspath'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '66', 'type': 'if_statement', 'children': ['67', '76']},{'id': '67', 'type': 'not_operator', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '74']},{'id': '69', 'type': 'attribute', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'isdir'},{'id': '74', 'type': 'argument_list', 'children': ['75']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '76', 'type': 'block', 'children': ['77', '84']},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'call', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'binary_operator', 'children': ['82', '83'], 'value': '%'},{'id': '82', 'type': 'string', 'children': [], 'value': '"Path %s is not a directory!"'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'integer', 'children': [], 'value': '1'},{'id': '91', 'type': 'if_statement', 'children': ['92', '101']},{'id': '92', 'type': 'not_operator', 'children': ['93']},{'id': '93', 'type': 'call', 'children': ['94', '99']},{'id': '94', 'type': 'attribute', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'exists'},{'id': '99', 'type': 'argument_list', 'children': ['100']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '101', 'type': 'block', 'children': ['102', '109']},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'call', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'binary_operator', 'children': ['107', '108'], 'value': '%'},{'id': '107', 'type': 'string', 'children': [], 'value': '"Path %s does not exist"'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'call', 'children': ['111', '114']},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '114', 'type': 'argument_list', 'children': ['115']},{'id': '115', 'type': 'integer', 'children': [], 'value': '1'},{'id': '116', 'type': 'for_statement', 'children': ['117', '121', '127']},{'id': '117', 'type': 'pattern_list', 'children': ['118', '119', '120']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'dirpath'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'dirnames'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '121', 'type': 'call', 'children': ['122', '125']},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'walk'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '127', 'type': 'block', 'children': ['128']},{'id': '128', 'type': 'if_statement', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '130', 'type': 'block', 'children': ['131', '138']},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'call', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '134', 'type': 'argument_list', 'children': ['135']},{'id': '135', 'type': 'binary_operator', 'children': ['136', '137'], 'value': '%'},{'id': '136', 'type': 'string', 'children': [], 'value': '"Path %s is not empty!\\n"'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '138', 'type': 'if_statement', 'children': ['139', '141']},{'id': '139', 'type': 'not_operator', 'children': ['140']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'overwrite'},{'id': '141', 'type': 'block', 'children': ['142']},{'id': '142', 'type': 'expression_statement', 'children': ['143']},{'id': '143', 'type': 'call', 'children': ['144', '147']},{'id': '144', 'type': 'attribute', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '147', 'type': 'argument_list', 'children': ['148']},{'id': '148', 'type': 'integer', 'children': [], 'value': '1'},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'assignment', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '152', 'type': 'list', 'children': [], 'value': '[]'},{'id': '153', 'type': 'for_statement', 'children': ['154', '157', '170']},{'id': '154', 'type': 'pattern_list', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '157', 'type': 'call', 'children': ['158', '169']},{'id': '158', 'type': 'attribute', 'children': ['159', '168']},{'id': '159', 'type': 'call', 'children': ['160', '167']},{'id': '160', 'type': 'attribute', 'children': ['161', '166']},{'id': '161', 'type': 'attribute', 'children': ['162', '165']},{'id': '162', 'type': 'attribute', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '167', 'type': 'argument_list', 'children': []},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '169', 'type': 'argument_list', 'children': []},{'id': '170', 'type': 'block', 'children': ['171', '178', '190', '199', '203']},{'id': '171', 'type': 'expression_statement', 'children': ['172']},{'id': '172', 'type': 'assignment', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'file_extension'},{'id': '174', 'type': 'conditional_expression', 'children': ['175', '176', '177'], 'value': 'if'},{'id': '175', 'type': 'string', 'children': [], 'value': '".html"'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'html'},{'id': '177', 'type': 'string', 'children': [], 'value': '".rst"'},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'assignment', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'file_name_parts'},{'id': '181', 'type': 'call', 'children': ['182', '189']},{'id': '182', 'type': 'attribute', 'children': ['183', '188']},{'id': '183', 'type': 'call', 'children': ['184', '187']},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '187', 'type': 'argument_list', 'children': []},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '189', 'type': 'argument_list', 'children': []},{'id': '190', 'type': 'expression_statement', 'children': ['191']},{'id': '191', 'type': 'assignment', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'file_name'},{'id': '193', 'type': 'call', 'children': ['194', '197']},{'id': '194', 'type': 'attribute', 'children': ['195', '196']},{'id': '195', 'type': 'string', 'children': [], 'value': '""'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '197', 'type': 'argument_list', 'children': ['198']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'file_name_parts'},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'augmented_assignment', 'children': ['201', '202'], 'value': '+='},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'file_name'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'file_extension'},{'id': '203', 'type': 'expression_statement', 'children': ['204']},{'id': '204', 'type': 'call', 'children': ['205', '208']},{'id': '205', 'type': 'attribute', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '208', 'type': 'argument_list', 'children': ['209']},{'id': '209', 'type': 'tuple', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'file_name'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '212', 'type': 'expression_statement', 'children': ['213']},{'id': '213', 'type': 'call', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '215', 'type': 'argument_list', 'children': ['216']},{'id': '216', 'type': 'string', 'children': [], 'value': '"Going to write to following files:"'},{'id': '217', 'type': 'for_statement', 'children': ['218', '219', '220']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '220', 'type': 'block', 'children': ['221']},{'id': '221', 'type': 'expression_statement', 'children': ['222']},{'id': '222', 'type': 'call', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '224', 'type': 'argument_list', 'children': ['225']},{'id': '225', 'type': 'binary_operator', 'children': ['226', '227'], 'value': '%'},{'id': '226', 'type': 'string', 'children': [], 'value': '" %s"'},{'id': '227', 'type': 'subscript', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '229', 'type': 'integer', 'children': [], 'value': '0'},{'id': '230', 'type': 'expression_statement', 'children': ['231']},{'id': '231', 'type': 'call', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '233', 'type': 'argument_list', 'children': ['234']},{'id': '234', 'type': 'binary_operator', 'children': ['235', '236'], 'value': '%'},{'id': '235', 'type': 'string', 'children': [], 'value': '"\\nTarget directory: %s"'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '237', 'type': 'expression_statement', 'children': ['238']},{'id': '238', 'type': 'assignment', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'answer'},{'id': '240', 'type': 'None', 'children': []},{'id': '241', 'type': 'while_statement', 'children': ['242', '250']},{'id': '242', 'type': 'boolean_operator', 'children': ['243', '248'], 'value': 'and'},{'id': '243', 'type': 'comparison_operator', 'children': ['244', '245'], 'value': 'not'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'answer'},{'id': '245', 'type': 'list', 'children': ['246', '247'], 'value': '["N", "Y"]'},{'id': '246', 'type': 'string', 'children': [], 'value': '"N"'},{'id': '247', 'type': 'string', 'children': [], 'value': '"Y"'},{'id': '248', 'type': 'not_operator', 'children': ['249']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'quiet'},{'id': '250', 'type': 'block', 'children': ['251']},{'id': '251', 'type': 'expression_statement', 'children': ['252']},{'id': '252', 'type': 'assignment', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'answer'},{'id': '254', 'type': 'call', 'children': ['255', '261']},{'id': '255', 'type': 'attribute', 'children': ['256', '260']},{'id': '256', 'type': 'call', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'prompt'},{'id': '258', 'type': 'argument_list', 'children': ['259']},{'id': '259', 'type': 'string', 'children': [], 'value': '"Shall we go on? [Y]es, [N]o: "'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'upper'},{'id': '261', 'type': 'argument_list', 'children': []},{'id': '262', 'type': 'if_statement', 'children': ['263', '266']},{'id': '263', 'type': 'comparison_operator', 'children': ['264', '265'], 'value': '=='},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'answer'},{'id': '265', 'type': 'string', 'children': [], 'value': '"N"'},{'id': '266', 'type': 'block', 'children': ['267']},{'id': '267', 'type': 'expression_statement', 'children': ['268']},{'id': '268', 'type': 'call', 'children': ['269', '272']},{'id': '269', 'type': 'attribute', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '272', 'type': 'argument_list', 'children': ['273']},{'id': '273', 'type': 'integer', 'children': [], 'value': '0'},{'id': '274', 'type': 'for_statement', 'children': ['275', '276', '277']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '277', 'type': 'block', 'children': ['278']},{'id': '278', 'type': 'try_statement', 'children': ['279', '361', '378']},{'id': '279', 'type': 'block', 'children': ['280']},{'id': '280', 'type': 'with_statement', 'children': ['281', '301']},{'id': '281', 'type': 'with_clause', 'children': ['282']},{'id': '282', 'type': 'with_item', 'children': ['283']},{'id': '283', 'type': 'as_pattern', 'children': ['284', '299']},{'id': '284', 'type': 'call', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '286', 'type': 'argument_list', 'children': ['287', '298']},{'id': '287', 'type': 'call', 'children': ['288', '293']},{'id': '288', 'type': 'attribute', 'children': ['289', '292']},{'id': '289', 'type': 'attribute', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '293', 'type': 'argument_list', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '295', 'type': 'subscript', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '297', 'type': 'integer', 'children': [], 'value': '0'},{'id': '298', 'type': 'string', 'children': [], 'value': '"w"'},{'id': '299', 'type': 'as_pattern_target', 'children': ['300']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'doc_file'},{'id': '301', 'type': 'block', 'children': ['302', '333', '354']},{'id': '302', 'type': 'expression_statement', 'children': ['303']},{'id': '303', 'type': 'assignment', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'doc_rendered'},{'id': '305', 'type': 'call', 'children': ['306', '320']},{'id': '306', 'type': 'attribute', 'children': ['307', '319']},{'id': '307', 'type': 'call', 'children': ['308', '313']},{'id': '308', 'type': 'attribute', 'children': ['309', '312']},{'id': '309', 'type': 'call', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'Environment'},{'id': '311', 'type': 'argument_list', 'children': []},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'from_string'},{'id': '313', 'type': 'argument_list', 'children': ['314']},{'id': '314', 'type': 'attribute', 'children': ['315', '318']},{'id': '315', 'type': 'subscript', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '317', 'type': 'integer', 'children': [], 'value': '1'},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'content'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'render'},{'id': '320', 'type': 'argument_list', 'children': ['321', '326']},{'id': '321', 'type': 'keyword_argument', 'children': ['322', '323']},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '323', 'type': 'attribute', 'children': ['324', '325']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '326', 'type': 'keyword_argument', 'children': ['327', '328']},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'plugin'},{'id': '328', 'type': 'attribute', 'children': ['329', '332']},{'id': '329', 'type': 'subscript', 'children': ['330', '331']},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '331', 'type': 'integer', 'children': [], 'value': '1'},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'plugin'},{'id': '333', 'type': 'if_statement', 'children': ['334', '335', '348']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'html'},{'id': '335', 'type': 'block', 'children': ['336']},{'id': '336', 'type': 'expression_statement', 'children': ['337']},{'id': '337', 'type': 'assignment', 'children': ['338', '339']},{'id': '338', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '339', 'type': 'subscript', 'children': ['340', '347']},{'id': '340', 'type': 'call', 'children': ['341', '342']},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'publish_parts'},{'id': '342', 'type': 'argument_list', 'children': ['343', '344']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'doc_rendered'},{'id': '344', 'type': 'keyword_argument', 'children': ['345', '346']},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'writer_name'},{'id': '346', 'type': 'string', 'children': [], 'value': '"html"'},{'id': '347', 'type': 'string', 'children': [], 'value': "'whole'"},{'id': '348', 'type': 'else_clause', 'children': ['349']},{'id': '349', 'type': 'block', 'children': ['350']},{'id': '350', 'type': 'expression_statement', 'children': ['351']},{'id': '351', 'type': 'assignment', 'children': ['352', '353']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'doc_rendered'},{'id': '354', 'type': 'expression_statement', 'children': ['355']},{'id': '355', 'type': 'call', 'children': ['356', '359']},{'id': '356', 'type': 'attribute', 'children': ['357', '358']},{'id': '357', 'type': 'identifier', 'children': [], 'value': 'doc_file'},{'id': '358', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '359', 'type': 'argument_list', 'children': ['360']},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '361', 'type': 'except_clause', 'children': ['362', '366']},{'id': '362', 'type': 'as_pattern', 'children': ['363', '364']},{'id': '363', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '364', 'type': 'as_pattern_target', 'children': ['365']},{'id': '365', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '366', 'type': 'block', 'children': ['367']},{'id': '367', 'type': 'expression_statement', 'children': ['368']},{'id': '368', 'type': 'call', 'children': ['369', '370']},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '370', 'type': 'argument_list', 'children': ['371']},{'id': '371', 'type': 'binary_operator', 'children': ['372', '373'], 'value': '%'},{'id': '372', 'type': 'string', 'children': [], 'value': '"%s error occurred: %s"'},{'id': '373', 'type': 'tuple', 'children': ['374', '377']},{'id': '374', 'type': 'subscript', 'children': ['375', '376']},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '376', 'type': 'integer', 'children': [], 'value': '0'},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '378', 'type': 'else_clause', 'children': ['379']},{'id': '379', 'type': 'block', 'children': ['380']},{'id': '380', 'type': 'expression_statement', 'children': ['381']},{'id': '381', 'type': 'call', 'children': ['382', '383']},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '383', 'type': 'argument_list', 'children': ['384']},{'id': '384', 'type': 'binary_operator', 'children': ['385', '386'], 'value': '%'},{'id': '385', 'type': 'string', 'children': [], 'value': '"%s stored."'},{'id': '386', 'type': 'subscript', 'children': ['387', '388']},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '388', 'type': 'integer', 'children': [], 'value': '0'} | def _store_documentation(self, path, html, overwrite, quiet):
echo("Storing groundwork application documents\n")
echo("Application: %s" % self.app.name)
echo("Number of documents: %s\n" % len(self.app.documents.get()))
if not os.path.isabs(path):
path = os.path.abspath(path)
if not os.path.isdir(path):
echo("Path %s is not a directory!" % path)
sys.exit(1)
if not os.path.exists(path):
echo("Path %s does not exist" % path)
sys.exit(1)
for dirpath, dirnames, files in os.walk(path):
if files:
echo("Path %s is not empty!\n" % path)
if not overwrite:
sys.exit(1)
documents = []
for key, document in self.app.documents.get().items():
file_extension = ".html" if html else ".rst"
file_name_parts = key.lower().split()
file_name = "".join(file_name_parts)
file_name += file_extension
documents.append((file_name, document))
echo("Going to write to following files:")
for document in documents:
echo(" %s" % document[0])
echo("\nTarget directory: %s" % path)
answer = None
while answer not in ["N", "Y"] and not quiet:
answer = prompt("Shall we go on? [Y]es, [N]o: ").upper()
if answer == "N":
sys.exit(0)
for document in documents:
try:
with open(os.path.join(path, document[0]), "w") as doc_file:
doc_rendered = Environment().from_string(document[1].content).render(app=self.app,
plugin=document[1].plugin)
if html:
output = publish_parts(doc_rendered, writer_name="html")['whole']
else:
output = doc_rendered
doc_file.write(output)
except Exception as e:
echo("%s error occurred: %s" % (document[0], e))
else:
echo("%s stored." % document[0]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_show_documentation'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '10', '42', '57', '70', '87', '91', '95']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '9', 'type': 'list', 'children': [], 'value': '[]'},{'id': '10', 'type': 'for_statement', 'children': ['11', '14', '27']},{'id': '11', 'type': 'pattern_list', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '14', 'type': 'call', 'children': ['15', '26']},{'id': '15', 'type': 'attribute', 'children': ['16', '25']},{'id': '16', 'type': 'call', 'children': ['17', '24']},{'id': '17', 'type': 'attribute', 'children': ['18', '23']},{'id': '18', 'type': 'attribute', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '24', 'type': 'argument_list', 'children': []},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '26', 'type': 'argument_list', 'children': []},{'id': '27', 'type': 'block', 'children': ['28']},{'id': '28', 'type': 'if_statement', 'children': ['29', '32']},{'id': '29', 'type': 'comparison_operator', 'children': ['30', '31'], 'value': '!='},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '31', 'type': 'string', 'children': [], 'value': '"main"'},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'tuple', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '47', 'type': 'argument_list', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '51', 'type': 'lambda', 'children': ['52', '54']},{'id': '52', 'type': 'lambda_parameters', 'children': ['53']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '54', 'type': 'subscript', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '56', 'type': 'integer', 'children': [], 'value': '0'},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'main'},{'id': '60', 'type': 'call', 'children': ['61', '68']},{'id': '61', 'type': 'attribute', 'children': ['62', '67']},{'id': '62', 'type': 'attribute', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'string', 'children': [], 'value': '"main"'},{'id': '70', 'type': 'if_statement', 'children': ['71', '74']},{'id': '71', 'type': 'comparison_operator', 'children': ['72', '73'], 'value': 'is'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'main'},{'id': '73', 'type': 'None', 'children': []},{'id': '74', 'type': 'block', 'children': ['75']},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'insert'},{'id': '80', 'type': 'argument_list', 'children': ['81', '82']},{'id': '81', 'type': 'integer', 'children': [], 'value': '0'},{'id': '82', 'type': 'tuple', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'main'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'main'},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'user_answer'},{'id': '90', 'type': 'string', 'children': [], 'value': '""'},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '94', 'type': 'integer', 'children': [], 'value': '0'},{'id': '95', 'type': 'while_statement', 'children': ['96', '99']},{'id': '96', 'type': 'comparison_operator', 'children': ['97', '98'], 'value': '!='},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'user_answer'},{'id': '98', 'type': 'string', 'children': [], 'value': '"X"'},{'id': '99', 'type': 'block', 'children': ['100', '109', '128', '136', '150', '178', '192', '202', '207', '217', '221', '235', '244', '248', '253', '282', '296']},{'id': '100', 'type': 'if_statement', 'children': ['101', '104']},{'id': '101', 'type': 'comparison_operator', 'children': ['102', '103'], 'value': '<'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '103', 'type': 'integer', 'children': [], 'value': '0'},{'id': '104', 'type': 'block', 'children': ['105']},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'assignment', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '108', 'type': 'integer', 'children': [], 'value': '0'},{'id': '109', 'type': 'if_statement', 'children': ['110', '118']},{'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': '>'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '112', 'type': 'binary_operator', 'children': ['113', '117'], 'value': '-'},{'id': '113', 'type': 'call', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '115', 'type': 'argument_list', 'children': ['116']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '117', 'type': 'integer', 'children': [], 'value': '1'},{'id': '118', 'type': 'block', 'children': ['119']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '122', 'type': 'binary_operator', 'children': ['123', '127'], 'value': '-'},{'id': '123', 'type': 'call', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '127', 'type': 'integer', 'children': [], 'value': '1'},{'id': '128', 'type': 'expression_statement', 'children': ['129']},{'id': '129', 'type': 'assignment', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '131', 'type': 'subscript', 'children': ['132', '135']},{'id': '132', 'type': 'subscript', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '135', 'type': 'integer', 'children': [], 'value': '1'},{'id': '136', 'type': 'expression_statement', 'children': ['137']},{'id': '137', 'type': 'call', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'system'},{'id': '141', 'type': 'argument_list', 'children': ['142']},{'id': '142', 'type': 'conditional_expression', 'children': ['143', '144', '149'], 'value': 'if'},{'id': '143', 'type': 'string', 'children': [], 'value': "'cls'"},{'id': '144', 'type': 'comparison_operator', 'children': ['145', '148'], 'value': '=='},{'id': '145', 'type': 'attribute', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '148', 'type': 'string', 'children': [], 'value': "'nt'"},{'id': '149', 'type': 'string', 'children': [], 'value': "'clear'"},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'call', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '167']},{'id': '155', 'type': 'attribute', 'children': ['156', '166']},{'id': '156', 'type': 'call', 'children': ['157', '162']},{'id': '157', 'type': 'attribute', 'children': ['158', '161']},{'id': '158', 'type': 'call', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'Environment'},{'id': '160', 'type': 'argument_list', 'children': []},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'from_string'},{'id': '162', 'type': 'argument_list', 'children': ['163']},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'content'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'render'},{'id': '167', 'type': 'argument_list', 'children': ['168', '173']},{'id': '168', 'type': 'keyword_argument', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '170', 'type': 'attribute', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '173', 'type': 'keyword_argument', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'plugin'},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'plugin'},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'assignment', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '181', 'type': 'binary_operator', 'children': ['182', '183'], 'value': '%'},{'id': '182', 'type': 'string', 'children': [], 'value': '"This document is registered by \'%s\' under the name \'%s\'"'},{'id': '183', 'type': 'tuple', 'children': ['184', '189']},{'id': '184', 'type': 'attribute', 'children': ['185', '188']},{'id': '185', 'type': 'attribute', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'plugin'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '189', 'type': 'attribute', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '192', 'type': 'expression_statement', 'children': ['193']},{'id': '193', 'type': 'call', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '195', 'type': 'argument_list', 'children': ['196']},{'id': '196', 'type': 'binary_operator', 'children': ['197', '198'], 'value': '*'},{'id': '197', 'type': 'string', 'children': [], 'value': '"-"'},{'id': '198', 'type': 'call', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '200', 'type': 'argument_list', 'children': ['201']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '202', 'type': 'expression_statement', 'children': ['203']},{'id': '203', 'type': 'call', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '205', 'type': 'argument_list', 'children': ['206']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '207', 'type': 'expression_statement', 'children': ['208']},{'id': '208', 'type': 'call', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '210', 'type': 'argument_list', 'children': ['211']},{'id': '211', 'type': 'binary_operator', 'children': ['212', '213'], 'value': '*'},{'id': '212', 'type': 'string', 'children': [], 'value': '"-"'},{'id': '213', 'type': 'call', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '215', 'type': 'argument_list', 'children': ['216']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'assignment', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '220', 'type': 'string', 'children': [], 'value': '"Actions: "'},{'id': '221', 'type': 'if_statement', 'children': ['222', '230']},{'id': '222', 'type': 'comparison_operator', 'children': ['223', '224'], 'value': '<'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '224', 'type': 'binary_operator', 'children': ['225', '229'], 'value': '-'},{'id': '225', 'type': 'call', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '227', 'type': 'argument_list', 'children': ['228']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '229', 'type': 'integer', 'children': [], 'value': '1'},{'id': '230', 'type': 'block', 'children': ['231']},{'id': '231', 'type': 'expression_statement', 'children': ['232']},{'id': '232', 'type': 'augmented_assignment', 'children': ['233', '234'], 'value': '+='},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '234', 'type': 'string', 'children': [], 'value': '"[N]ext, "'},{'id': '235', 'type': 'if_statement', 'children': ['236', '239']},{'id': '236', 'type': 'comparison_operator', 'children': ['237', '238'], 'value': '>'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '238', 'type': 'integer', 'children': [], 'value': '0'},{'id': '239', 'type': 'block', 'children': ['240']},{'id': '240', 'type': 'expression_statement', 'children': ['241']},{'id': '241', 'type': 'augmented_assignment', 'children': ['242', '243'], 'value': '+='},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '243', 'type': 'string', 'children': [], 'value': '"[P]revious, "'},{'id': '244', 'type': 'expression_statement', 'children': ['245']},{'id': '245', 'type': 'augmented_assignment', 'children': ['246', '247'], 'value': '+='},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '247', 'type': 'string', 'children': [], 'value': '"E[x]it"'},{'id': '248', 'type': 'expression_statement', 'children': ['249']},{'id': '249', 'type': 'call', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'echo'},{'id': '251', 'type': 'argument_list', 'children': ['252']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '253', 'type': 'if_statement', 'children': ['254', '262', '267', '276']},{'id': '254', 'type': 'comparison_operator', 'children': ['255', '256'], 'value': '<'},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '256', 'type': 'binary_operator', 'children': ['257', '261'], 'value': '-'},{'id': '257', 'type': 'call', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '259', 'type': 'argument_list', 'children': ['260']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'documents'},{'id': '261', 'type': 'integer', 'children': [], 'value': '1'},{'id': '262', 'type': 'block', 'children': ['263']},{'id': '263', 'type': 'expression_statement', 'children': ['264']},{'id': '264', 'type': 'assignment', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '266', 'type': 'string', 'children': [], 'value': '"N"'},{'id': '267', 'type': 'elif_clause', 'children': ['268', '271']},{'id': '268', 'type': 'comparison_operator', 'children': ['269', '270'], 'value': '>'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '270', 'type': 'integer', 'children': [], 'value': '0'},{'id': '271', 'type': 'block', 'children': ['272']},{'id': '272', 'type': 'expression_statement', 'children': ['273']},{'id': '273', 'type': 'assignment', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '275', 'type': 'string', 'children': [], 'value': '"P"'},{'id': '276', 'type': 'else_clause', 'children': ['277']},{'id': '277', 'type': 'block', 'children': ['278']},{'id': '278', 'type': 'expression_statement', 'children': ['279']},{'id': '279', 'type': 'assignment', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '281', 'type': 'string', 'children': [], 'value': '"X"'},{'id': '282', 'type': 'expression_statement', 'children': ['283']},{'id': '283', 'type': 'assignment', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'user_answer'},{'id': '285', 'type': 'call', 'children': ['286', '295']},{'id': '286', 'type': 'attribute', 'children': ['287', '294']},{'id': '287', 'type': 'call', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'prompt'},{'id': '289', 'type': 'argument_list', 'children': ['290', '291']},{'id': '290', 'type': 'string', 'children': [], 'value': '"Select your action"'},{'id': '291', 'type': 'keyword_argument', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'upper'},{'id': '295', 'type': 'argument_list', 'children': []},{'id': '296', 'type': 'if_statement', 'children': ['297', '300', '305']},{'id': '297', 'type': 'comparison_operator', 'children': ['298', '299'], 'value': '=='},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'user_answer'},{'id': '299', 'type': 'string', 'children': [], 'value': '"N"'},{'id': '300', 'type': 'block', 'children': ['301']},{'id': '301', 'type': 'expression_statement', 'children': ['302']},{'id': '302', 'type': 'augmented_assignment', 'children': ['303', '304'], 'value': '+='},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '304', 'type': 'integer', 'children': [], 'value': '1'},{'id': '305', 'type': 'elif_clause', 'children': ['306', '309']},{'id': '306', 'type': 'comparison_operator', 'children': ['307', '308'], 'value': '=='},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'user_answer'},{'id': '308', 'type': 'string', 'children': [], 'value': '"P"'},{'id': '309', 'type': 'block', 'children': ['310']},{'id': '310', 'type': 'expression_statement', 'children': ['311']},{'id': '311', 'type': 'augmented_assignment', 'children': ['312', '313'], 'value': '-='},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '313', 'type': 'integer', 'children': [], 'value': '1'} | def _show_documentation(self):
documents = []
for key, document in self.app.documents.get().items():
if key != "main":
documents.append((key, document))
documents = sorted(documents, key=lambda x: x[0])
main = self.app.documents.get("main")
if main is not None:
documents.insert(0, (main.name, main))
user_answer = ""
index = 0
while user_answer != "X":
if index < 0:
index = 0
if index > len(documents) - 1:
index = len(documents) - 1
document = documents[index][1]
os.system('cls' if os.name == 'nt' else 'clear')
echo(Environment().from_string(document.content).render(app=self.app, plugin=document.plugin))
source = "This document is registered by '%s' under the name '%s'" % (document.plugin.name, document.name)
echo("-" * len(source))
echo(source)
echo("-" * len(source))
commands = "Actions: "
if index < len(documents) - 1:
commands += "[N]ext, "
if index > 0:
commands += "[P]revious, "
commands += "E[x]it"
echo(commands)
if index < len(documents) - 1:
default = "N"
elif index > 0:
default = "P"
else:
default = "X"
user_answer = prompt("Select your action", default=default).upper()
if user_answer == "N":
index += 1
elif user_answer == "P":
index -= 1 |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'infer_declared_from_conditions'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'conds'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'namespace'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '11', '15', '26', '35', '44', '50', '54', '149', '160']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'string', 'children': [], 'value': "''' like infer_declared except that it is passed a set of first party\n caveat conditions as a list of string rather than a set of macaroons.\n '''"},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'conflicts'},{'id': '14', 'type': 'list', 'children': [], 'value': '[]'},{'id': '15', 'type': 'if_statement', 'children': ['16', '19']},{'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'is'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'namespace'},{'id': '18', 'type': 'None', 'children': []},{'id': '19', 'type': 'block', 'children': ['20']},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'namespace'},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'Namespace'},{'id': '25', 'type': 'argument_list', 'children': []},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'namespace'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'resolve'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'STD_NAMESPACE'},{'id': '35', 'type': 'if_statement', 'children': ['36', '39']},{'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': 'is'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '38', 'type': 'None', 'children': []},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '43', 'type': 'string', 'children': [], 'value': "''"},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'declared_cond'},{'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '+'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'COND_DECLARED'},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '53', 'type': 'dictionary', 'children': []},{'id': '54', 'type': 'for_statement', 'children': ['55', '56', '57']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'cond'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'conds'},{'id': '57', 'type': 'block', 'children': ['58', '80', '86', '96', '105', '117', '126', '143']},{'id': '58', 'type': 'try_statement', 'children': ['59', '69']},{'id': '59', 'type': 'block', 'children': ['60']},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '65']},{'id': '62', 'type': 'pattern_list', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'rest'},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'parse_caveat'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'cond'},{'id': '69', 'type': 'except_clause', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '71', 'type': 'block', 'children': ['72']},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '77']},{'id': '74', 'type': 'pattern_list', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'rest'},{'id': '77', 'type': 'expression_list', 'children': ['78', '79']},{'id': '78', 'type': 'string', 'children': [], 'value': "''"},{'id': '79', 'type': 'string', 'children': [], 'value': "''"},{'id': '80', 'type': 'if_statement', 'children': ['81', '84']},{'id': '81', 'type': 'comparison_operator', 'children': ['82', '83'], 'value': '!='},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'declared_cond'},{'id': '84', 'type': 'block', 'children': ['85']},{'id': '85', 'type': 'continue_statement', 'children': []},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'parts'},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'rest'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '93', 'type': 'argument_list', 'children': ['94', '95']},{'id': '94', 'type': 'string', 'children': [], 'value': "' '"},{'id': '95', 'type': 'integer', 'children': [], 'value': '1'},{'id': '96', 'type': 'if_statement', 'children': ['97', '103']},{'id': '97', 'type': 'comparison_operator', 'children': ['98', '102'], 'value': '!='},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'parts'},{'id': '102', 'type': 'integer', 'children': [], 'value': '2'},{'id': '103', 'type': 'block', 'children': ['104']},{'id': '104', 'type': 'continue_statement', 'children': []},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'assignment', 'children': ['107', '110']},{'id': '107', 'type': 'pattern_list', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '110', 'type': 'expression_list', 'children': ['111', '114']},{'id': '111', 'type': 'subscript', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'parts'},{'id': '113', 'type': 'integer', 'children': [], 'value': '0'},{'id': '114', 'type': 'subscript', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'parts'},{'id': '116', 'type': 'integer', 'children': [], 'value': '1'},{'id': '117', 'type': 'expression_statement', 'children': ['118']},{'id': '118', 'type': 'assignment', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'old_val'},{'id': '120', 'type': 'call', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '124', 'type': 'argument_list', 'children': ['125']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '126', 'type': 'if_statement', 'children': ['127', '134']},{'id': '127', 'type': 'boolean_operator', 'children': ['128', '131'], 'value': 'and'},{'id': '128', 'type': 'comparison_operator', 'children': ['129', '130'], 'value': 'is'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'old_val'},{'id': '130', 'type': 'None', 'children': []},{'id': '131', 'type': 'comparison_operator', 'children': ['132', '133'], 'value': '!='},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'old_val'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '134', 'type': 'block', 'children': ['135', '142']},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'call', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'conflicts'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '142', 'type': 'continue_statement', 'children': []},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'assignment', 'children': ['145', '148']},{'id': '145', 'type': 'subscript', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '149', 'type': 'for_statement', 'children': ['150', '151', '155']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '151', 'type': 'call', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'conflicts'},{'id': '155', 'type': 'block', 'children': ['156']},{'id': '156', 'type': 'delete_statement', 'children': ['157']},{'id': '157', 'type': 'subscript', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '160', 'type': 'return_statement', 'children': ['161']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'info'} | def infer_declared_from_conditions(conds, namespace=None):
''' like infer_declared except that it is passed a set of first party
caveat conditions as a list of string rather than a set of macaroons.
'''
conflicts = []
if namespace is None:
namespace = Namespace()
prefix = namespace.resolve(STD_NAMESPACE)
if prefix is None:
prefix = ''
declared_cond = prefix + COND_DECLARED
info = {}
for cond in conds:
try:
name, rest = parse_caveat(cond)
except ValueError:
name, rest = '', ''
if name != declared_cond:
continue
parts = rest.split(' ', 1)
if len(parts) != 2:
continue
key, val = parts[0], parts[1]
old_val = info.get(key)
if old_val is not None and old_val != val:
conflicts.append(key)
continue
info[key] = val
for key in set(conflicts):
del info[key]
return info |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_cited_dois'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '5', 'type': 'block', 'children': ['6', '27', '31', '35', '119', '200']},{'id': '6', 'type': 'if_statement', 'children': ['7', '13', '21']},{'id': '7', 'type': 'not_operator', 'children': ['8']},{'id': '8', 'type': 'call', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '10', 'type': 'argument_list', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '13', 'type': 'block', 'children': ['14']},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'plaintext_citations'},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'get_plaintext_citations'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '21', 'type': 'else_clause', 'children': ['22']},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'plaintext_citations'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'dois'},{'id': '30', 'type': 'dictionary', 'children': []},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'crossref_queue'},{'id': '34', 'type': 'list', 'children': [], 'value': '[]'},{'id': '35', 'type': 'for_statement', 'children': ['36', '37', '41']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'citation'},{'id': '37', 'type': 'subscript', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'plaintext_citations'},{'id': '39', 'type': 'slice', 'children': ['40']},{'id': '40', 'type': 'colon', 'children': []},{'id': '41', 'type': 'block', 'children': ['42', '51', '72', '81', '107']},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'matched_dois'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'doi'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'extract_from_text'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'citation'},{'id': '51', 'type': 'if_statement', 'children': ['52', '58']},{'id': '52', 'type': 'comparison_operator', 'children': ['53', '57'], 'value': '>'},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'matched_dois'},{'id': '57', 'type': 'integer', 'children': [], 'value': '0'},{'id': '58', 'type': 'block', 'children': ['59', '71']},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '64']},{'id': '61', 'type': 'subscript', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'dois'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'citation'},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'iter'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'matched_dois'},{'id': '71', 'type': 'continue_statement', 'children': []},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'matched_arxiv'},{'id': '75', 'type': 'call', 'children': ['76', '79']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'arxiv'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'extract_from_text'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'citation'},{'id': '81', 'type': 'if_statement', 'children': ['82', '88']},{'id': '82', 'type': 'comparison_operator', 'children': ['83', '87'], 'value': '>'},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'matched_arxiv'},{'id': '87', 'type': 'integer', 'children': [], 'value': '0'},{'id': '88', 'type': 'block', 'children': ['89', '106']},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'assignment', 'children': ['91', '94']},{'id': '91', 'type': 'subscript', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'dois'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'citation'},{'id': '94', 'type': 'call', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'arxiv'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'to_doi'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'iter'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'matched_arxiv'},{'id': '106', 'type': 'continue_statement', 'children': []},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'call', 'children': ['109', '112']},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'crossref_queue'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '112', 'type': 'argument_list', 'children': ['113']},{'id': '113', 'type': 'call', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'tools'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'remove_urls'},{'id': '117', 'type': 'argument_list', 'children': ['118']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'citation'},{'id': '119', 'type': 'for_statement', 'children': ['120', '121', '128']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'batch'},{'id': '121', 'type': 'call', 'children': ['122', '125']},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'tools'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'batch'},{'id': '125', 'type': 'argument_list', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'crossref_queue'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'CROSSREF_MAX_BATCH_SIZE'},{'id': '128', 'type': 'block', 'children': ['129', '137']},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'batch'},{'id': '132', 'type': 'list_comprehension', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '134', 'type': 'for_in_clause', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'batch'},{'id': '137', 'type': 'try_statement', 'children': ['138', '184']},{'id': '138', 'type': 'block', 'children': ['139', '151']},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'assignment', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'requests'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '146', 'type': 'argument_list', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'CROSSREF_LINKS_API_URL'},{'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'batch'},{'id': '151', 'type': 'for_statement', 'children': ['152', '153', '160']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '153', 'type': 'subscript', 'children': ['154', '159']},{'id': '154', 'type': 'call', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '158', 'type': 'argument_list', 'children': []},{'id': '159', 'type': 'string', 'children': [], 'value': '"results"'},{'id': '160', 'type': 'block', 'children': ['161']},{'id': '161', 'type': 'try_statement', 'children': ['162', '173']},{'id': '162', 'type': 'block', 'children': ['163']},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'assignment', 'children': ['165', '170']},{'id': '165', 'type': 'subscript', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'dois'},{'id': '167', 'type': 'subscript', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '169', 'type': 'string', 'children': [], 'value': '"text"'},{'id': '170', 'type': 'subscript', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '172', 'type': 'string', 'children': [], 'value': '"doi"'},{'id': '173', 'type': 'except_clause', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '175', 'type': 'block', 'children': ['176']},{'id': '176', 'type': 'expression_statement', 'children': ['177']},{'id': '177', 'type': 'assignment', 'children': ['178', '183']},{'id': '178', 'type': 'subscript', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'dois'},{'id': '180', 'type': 'subscript', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '182', 'type': 'string', 'children': [], 'value': '"text"'},{'id': '183', 'type': 'None', 'children': []},{'id': '184', 'type': 'except_clause', 'children': ['185', '189']},{'id': '185', 'type': 'tuple', 'children': ['186', '187', '188']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'RequestException'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '189', 'type': 'block', 'children': ['190']},{'id': '190', 'type': 'for_statement', 'children': ['191', '192', '193']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'batch'},{'id': '193', 'type': 'block', 'children': ['194']},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'assignment', 'children': ['196', '199']},{'id': '196', 'type': 'subscript', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'dois'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '199', 'type': 'None', 'children': []},{'id': '200', 'type': 'return_statement', 'children': ['201']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'dois'} | def get_cited_dois(file):
if not isinstance(file, list):
plaintext_citations = get_plaintext_citations(file)
else:
plaintext_citations = file
dois = {}
crossref_queue = []
for citation in plaintext_citations[:]:
matched_dois = doi.extract_from_text(citation)
if len(matched_dois) > 0:
dois[citation] = next(iter(matched_dois))
continue
matched_arxiv = arxiv.extract_from_text(citation)
if len(matched_arxiv) > 0:
dois[citation] = arxiv.to_doi(next(iter(matched_arxiv)))
continue
crossref_queue.append(tools.remove_urls(citation))
for batch in tools.batch(crossref_queue, CROSSREF_MAX_BATCH_SIZE):
batch = [i for i in batch]
try:
request = requests.post(CROSSREF_LINKS_API_URL, json=batch)
for result in request.json()["results"]:
try:
dois[result["text"]] = result["doi"]
except KeyError:
dois[result["text"]] = None
except (RequestException, ValueError, KeyError):
for i in batch:
dois[i] = None
return dois |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'used_args'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '10', '87', '96']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '9', 'type': 'list', 'children': [], 'value': '[]'},{'id': '10', 'type': 'for_statement', 'children': ['11', '14', '24']},{'id': '11', 'type': 'pattern_list', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '16', 'type': 'argument_list', 'children': ['17']},{'id': '17', 'type': 'subscript', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'words'},{'id': '21', 'type': 'slice', 'children': ['22', '23']},{'id': '22', 'type': 'integer', 'children': [], 'value': '1'},{'id': '23', 'type': 'colon', 'children': []},{'id': '24', 'type': 'block', 'children': ['25', '34', '48', '57']},{'id': '25', 'type': 'if_statement', 'children': ['26', '32']},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'continue_statement', 'children': []},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'option_str'},{'id': '37', 'type': 'subscript', 'children': ['38', '45']},{'id': '38', 'type': 'subscript', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'words'},{'id': '42', 'type': 'slice', 'children': ['43', '44']},{'id': '43', 'type': 'integer', 'children': [], 'value': '1'},{'id': '44', 'type': 'colon', 'children': []},{'id': '45', 'type': 'binary_operator', 'children': ['46', '47'], 'value': '-'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '47', 'type': 'integer', 'children': [], 'value': '1'},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'option'},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'get_option'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'option_str'},{'id': '57', 'type': 'if_statement', 'children': ['58', '66']},{'id': '58', 'type': 'boolean_operator', 'children': ['59', '62'], 'value': 'or'},{'id': '59', 'type': 'comparison_operator', 'children': ['60', '61'], 'value': 'is'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'option'},{'id': '61', 'type': 'None', 'children': []},{'id': '62', 'type': 'not_operator', 'children': ['63']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'option'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'need_value'},{'id': '66', 'type': 'block', 'children': ['67']},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'tuple', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '77'], 'value': '=='},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '77', 'type': 'call', 'children': ['78', '83']},{'id': '78', 'type': 'attribute', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'document'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'get_word_before_cursor'},{'id': '83', 'type': 'argument_list', 'children': ['84']},{'id': '84', 'type': 'keyword_argument', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'WORD'},{'id': '86', 'type': 'True', 'children': []},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'call', 'children': ['89', '92']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '92', 'type': 'argument_list', 'children': ['93']},{'id': '93', 'type': 'binary_operator', 'children': ['94', '95'], 'value': '%'},{'id': '94', 'type': 'string', 'children': [], 'value': '"Found args values %s"'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '96', 'type': 'for_statement', 'children': ['97', '98', '107']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '98', 'type': 'call', 'children': ['99', '106']},{'id': '99', 'type': 'attribute', 'children': ['100', '105']},{'id': '100', 'type': 'attribute', 'children': ['101', '104']},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '106', 'type': 'argument_list', 'children': []},{'id': '107', 'type': 'block', 'children': ['108', '114']},{'id': '108', 'type': 'if_statement', 'children': ['109', '111']},{'id': '109', 'type': 'not_operator', 'children': ['110']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '111', 'type': 'block', 'children': ['112']},{'id': '112', 'type': 'raise_statement', 'children': ['113']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'StopIteration'},{'id': '114', 'type': 'if_statement', 'children': ['115', '118', '126']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'is_multiple'},{'id': '118', 'type': 'block', 'children': ['119', '123']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '122', 'type': 'list', 'children': [], 'value': '[]'},{'id': '123', 'type': 'expression_statement', 'children': ['124']},{'id': '124', 'type': 'yield', 'children': ['125']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '126', 'type': 'elif_clause', 'children': ['127', '135']},{'id': '127', 'type': 'comparison_operator', 'children': ['128', '134'], 'value': 'is'},{'id': '128', 'type': 'call', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'nargs'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '135', 'type': 'block', 'children': ['136']},{'id': '136', 'type': 'for_statement', 'children': ['137', '138', '144']},{'id': '137', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'nargs'},{'id': '144', 'type': 'block', 'children': ['145', '154', '164']},{'id': '145', 'type': 'expression_statement', 'children': ['146']},{'id': '146', 'type': 'assignment', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '148', 'type': 'call', 'children': ['149', '152']},{'id': '149', 'type': 'attribute', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'integer', 'children': [], 'value': '0'},{'id': '154', 'type': 'if_statement', 'children': ['155', '160']},{'id': '155', 'type': 'comparison_operator', 'children': ['156', '159'], 'value': 'is'},{'id': '156', 'type': 'subscript', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '158', 'type': 'integer', 'children': [], 'value': '1'},{'id': '159', 'type': 'False', 'children': []},{'id': '160', 'type': 'block', 'children': ['161']},{'id': '161', 'type': 'expression_statement', 'children': ['162']},{'id': '162', 'type': 'yield', 'children': ['163']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '164', 'type': 'if_statement', 'children': ['165', '167']},{'id': '165', 'type': 'not_operator', 'children': ['166']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '167', 'type': 'block', 'children': ['168']},{'id': '168', 'type': 'raise_statement', 'children': ['169']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'StopIteration'} | def used_args(self):
values = []
for idx, c in enumerate(self.words[1:]):
if c.startswith('-'):
continue
option_str = self.words[1:][idx - 1]
option = self.get_option(option_str)
if option is None or not option.need_value:
values.append((c, c == self.document.get_word_before_cursor(WORD=True)))
logger.debug("Found args values %s" % values)
for arg in self.cmd.args.values():
if not values:
raise StopIteration
if arg.is_multiple:
values = []
yield arg
elif type(arg.nargs) is int:
for _ in range(arg.nargs):
value = values.pop(0)
if value[1] is False:
yield arg
if not values:
raise StopIteration |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_preprocess'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '5', 'type': 'block', 'children': ['6', '17', '28', '39', '50', '61', '72', '83', '94', '105', '116', '127', '138', '149', '333']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '9', 'type': 'call', 'children': ['10', '13']},{'id': '10', 'type': 'attribute', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '13', 'type': 'argument_list', 'children': ['14', '15', '16']},{'id': '14', 'type': 'string', 'children': [], 'value': "r'(\\b)a(\\b)'"},{'id': '15', 'type': 'string', 'children': [], 'value': "r'\\g<1>one\\g<2>'"},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '20', 'type': 'call', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '24', 'type': 'argument_list', 'children': ['25', '26', '27']},{'id': '25', 'type': 'string', 'children': [], 'value': "r'to the (.*) power'"},{'id': '26', 'type': 'string', 'children': [], 'value': "r'to \\g<1>'"},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '35', 'type': 'argument_list', 'children': ['36', '37', '38']},{'id': '36', 'type': 'string', 'children': [], 'value': "r'to the (.*?)(\\b)'"},{'id': '37', 'type': 'string', 'children': [], 'value': "r'to \\g<1>\\g<2>'"},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '46', 'type': 'argument_list', 'children': ['47', '48', '49']},{'id': '47', 'type': 'string', 'children': [], 'value': "r'log of'"},{'id': '48', 'type': 'string', 'children': [], 'value': "r'log'"},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '57', 'type': 'argument_list', 'children': ['58', '59', '60']},{'id': '58', 'type': 'string', 'children': [], 'value': "r'(square )?root( of)?'"},{'id': '59', 'type': 'string', 'children': [], 'value': "r'sqrt'"},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '64', 'type': 'call', 'children': ['65', '68']},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '68', 'type': 'argument_list', 'children': ['69', '70', '71']},{'id': '69', 'type': 'string', 'children': [], 'value': "r'squared'"},{'id': '70', 'type': 'string', 'children': [], 'value': "r'to two'"},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '75', 'type': 'call', 'children': ['76', '79']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '79', 'type': 'argument_list', 'children': ['80', '81', '82']},{'id': '80', 'type': 'string', 'children': [], 'value': "r'cubed'"},{'id': '81', 'type': 'string', 'children': [], 'value': "r'to three'"},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'assignment', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '86', 'type': 'call', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '90', 'type': 'argument_list', 'children': ['91', '92', '93']},{'id': '91', 'type': 'string', 'children': [], 'value': "r'divided?( by)?'"},{'id': '92', 'type': 'string', 'children': [], 'value': "r'divide'"},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '97', 'type': 'call', 'children': ['98', '101']},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '101', 'type': 'argument_list', 'children': ['102', '103', '104']},{'id': '102', 'type': 'string', 'children': [], 'value': "r'(\\b)over(\\b)'"},{'id': '103', 'type': 'string', 'children': [], 'value': "r'\\g<1>divide\\g<2>'"},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'assignment', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '108', 'type': 'call', 'children': ['109', '112']},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '112', 'type': 'argument_list', 'children': ['113', '114', '115']},{'id': '113', 'type': 'string', 'children': [], 'value': "r'(\\b)EE(\\b)'"},{'id': '114', 'type': 'string', 'children': [], 'value': "r'\\g<1>e\\g<2>'"},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '119', 'type': 'call', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '123', 'type': 'argument_list', 'children': ['124', '125', '126']},{'id': '124', 'type': 'string', 'children': [], 'value': "r'(\\b)E(\\b)'"},{'id': '125', 'type': 'string', 'children': [], 'value': "r'\\g<1>e\\g<2>'"},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'assignment', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '130', 'type': 'call', 'children': ['131', '134']},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '134', 'type': 'argument_list', 'children': ['135', '136', '137']},{'id': '135', 'type': 'string', 'children': [], 'value': "r'(\\b)pie(\\b)'"},{'id': '136', 'type': 'string', 'children': [], 'value': "r'\\g<1>pi\\g<2>'"},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '141', 'type': 'call', 'children': ['142', '145']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '145', 'type': 'argument_list', 'children': ['146', '147', '148']},{'id': '146', 'type': 'string', 'children': [], 'value': "r'(\\b)PI(\\b)'"},{'id': '147', 'type': 'string', 'children': [], 'value': "r'\\g<1>pi\\g<2>'"},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '149', 'type': 'function_definition', 'children': ['150', '151', '153']},{'id': '150', 'type': 'function_name', 'children': [], 'value': 'findImplicitMultiplications'},{'id': '151', 'type': 'parameters', 'children': ['152']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '153', 'type': 'block', 'children': ['154', '232', '325']},{'id': '154', 'type': 'function_definition', 'children': ['155', '156', '158']},{'id': '155', 'type': 'function_name', 'children': [], 'value': 'findConstantMultiplications'},{'id': '156', 'type': 'parameters', 'children': ['157']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '158', 'type': 'block', 'children': ['159', '168', '172', '178', '230']},{'id': '159', 'type': 'expression_statement', 'children': ['160']},{'id': '160', 'type': 'assignment', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '162', 'type': 'call', 'children': ['163', '166']},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '166', 'type': 'argument_list', 'children': ['167']},{'id': '167', 'type': 'string', 'children': [], 'value': "' '"},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'assignment', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '171', 'type': 'string', 'children': [], 'value': '""'},{'id': '172', 'type': 'expression_statement', 'children': ['173']},{'id': '173', 'type': 'assignment', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'NumberService'},{'id': '177', 'type': 'argument_list', 'children': []},{'id': '178', 'type': 'for_statement', 'children': ['179', '182', '186']},{'id': '179', 'type': 'pattern_list', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '182', 'type': 'call', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '186', 'type': 'block', 'children': ['187', '214']},{'id': '187', 'type': 'if_statement', 'children': ['188', '197']},{'id': '188', 'type': 'boolean_operator', 'children': ['189', '192'], 'value': 'and'},{'id': '189', 'type': 'comparison_operator', 'children': ['190', '191'], 'value': '>'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '191', 'type': 'integer', 'children': [], 'value': '0'},{'id': '192', 'type': 'comparison_operator', 'children': ['193', '194'], 'value': 'in'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '194', 'type': 'attribute', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'MathService'},{'id': '196', 'type': 'identifier', 'children': [], 'value': '__constants__'},{'id': '197', 'type': 'block', 'children': ['198']},{'id': '198', 'type': 'if_statement', 'children': ['199', '209']},{'id': '199', 'type': 'call', 'children': ['200', '203']},{'id': '200', 'type': 'attribute', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'isValid'},{'id': '203', 'type': 'argument_list', 'children': ['204']},{'id': '204', 'type': 'subscript', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '206', 'type': 'binary_operator', 'children': ['207', '208'], 'value': '-'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '208', 'type': 'integer', 'children': [], 'value': '1'},{'id': '209', 'type': 'block', 'children': ['210']},{'id': '210', 'type': 'expression_statement', 'children': ['211']},{'id': '211', 'type': 'augmented_assignment', 'children': ['212', '213'], 'value': '+='},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '213', 'type': 'string', 'children': [], 'value': '" times"'},{'id': '214', 'type': 'if_statement', 'children': ['215', '217', '222']},{'id': '215', 'type': 'not_operator', 'children': ['216']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '217', 'type': 'block', 'children': ['218']},{'id': '218', 'type': 'expression_statement', 'children': ['219']},{'id': '219', 'type': 'assignment', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '222', 'type': 'else_clause', 'children': ['223']},{'id': '223', 'type': 'block', 'children': ['224']},{'id': '224', 'type': 'expression_statement', 'children': ['225']},{'id': '225', 'type': 'augmented_assignment', 'children': ['226', '227'], 'value': '+='},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '227', 'type': 'binary_operator', 'children': ['228', '229'], 'value': '+'},{'id': '228', 'type': 'string', 'children': [], 'value': '" "'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '230', 'type': 'return_statement', 'children': ['231']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '232', 'type': 'function_definition', 'children': ['233', '234', '236']},{'id': '233', 'type': 'function_name', 'children': [], 'value': 'findUnaryMultiplications'},{'id': '234', 'type': 'parameters', 'children': ['235']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '236', 'type': 'block', 'children': ['237', '246', '250', '323']},{'id': '237', 'type': 'expression_statement', 'children': ['238']},{'id': '238', 'type': 'assignment', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '240', 'type': 'call', 'children': ['241', '244']},{'id': '241', 'type': 'attribute', 'children': ['242', '243']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '244', 'type': 'argument_list', 'children': ['245']},{'id': '245', 'type': 'string', 'children': [], 'value': "' '"},{'id': '246', 'type': 'expression_statement', 'children': ['247']},{'id': '247', 'type': 'assignment', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '249', 'type': 'string', 'children': [], 'value': '""'},{'id': '250', 'type': 'for_statement', 'children': ['251', '254', '258']},{'id': '251', 'type': 'pattern_list', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '254', 'type': 'call', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '256', 'type': 'argument_list', 'children': ['257']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '258', 'type': 'block', 'children': ['259', '307']},{'id': '259', 'type': 'if_statement', 'children': ['260', '269']},{'id': '260', 'type': 'boolean_operator', 'children': ['261', '264'], 'value': 'and'},{'id': '261', 'type': 'comparison_operator', 'children': ['262', '263'], 'value': '>'},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '263', 'type': 'integer', 'children': [], 'value': '0'},{'id': '264', 'type': 'comparison_operator', 'children': ['265', '266'], 'value': 'in'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '266', 'type': 'attribute', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'MathService'},{'id': '268', 'type': 'identifier', 'children': [], 'value': '__unaryOperators__'},{'id': '269', 'type': 'block', 'children': ['270', '278', '286', '294']},{'id': '270', 'type': 'expression_statement', 'children': ['271']},{'id': '271', 'type': 'assignment', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'last_op'},{'id': '273', 'type': 'subscript', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '275', 'type': 'binary_operator', 'children': ['276', '277'], 'value': '-'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '277', 'type': 'integer', 'children': [], 'value': '1'},{'id': '278', 'type': 'expression_statement', 'children': ['279']},{'id': '279', 'type': 'assignment', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'binary'},{'id': '281', 'type': 'comparison_operator', 'children': ['282', '283'], 'value': 'in'},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'last_op'},{'id': '283', 'type': 'attribute', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'MathService'},{'id': '285', 'type': 'identifier', 'children': [], 'value': '__binaryOperators__'},{'id': '286', 'type': 'expression_statement', 'children': ['287']},{'id': '287', 'type': 'assignment', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'unary'},{'id': '289', 'type': 'comparison_operator', 'children': ['290', '291'], 'value': 'in'},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'last_op'},{'id': '291', 'type': 'attribute', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'MathService'},{'id': '293', 'type': 'identifier', 'children': [], 'value': '__unaryOperators__'},{'id': '294', 'type': 'if_statement', 'children': ['295', '302']},{'id': '295', 'type': 'boolean_operator', 'children': ['296', '297'], 'value': 'and'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'last_op'},{'id': '297', 'type': 'not_operator', 'children': ['298']},{'id': '298', 'type': '()', 'children': ['299']},{'id': '299', 'type': 'boolean_operator', 'children': ['300', '301'], 'value': 'or'},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'binary'},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'unary'},{'id': '302', 'type': 'block', 'children': ['303']},{'id': '303', 'type': 'expression_statement', 'children': ['304']},{'id': '304', 'type': 'augmented_assignment', 'children': ['305', '306'], 'value': '+='},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '306', 'type': 'string', 'children': [], 'value': '" times"'},{'id': '307', 'type': 'if_statement', 'children': ['308', '310', '315']},{'id': '308', 'type': 'not_operator', 'children': ['309']},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '310', 'type': 'block', 'children': ['311']},{'id': '311', 'type': 'expression_statement', 'children': ['312']},{'id': '312', 'type': 'assignment', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '315', 'type': 'else_clause', 'children': ['316']},{'id': '316', 'type': 'block', 'children': ['317']},{'id': '317', 'type': 'expression_statement', 'children': ['318']},{'id': '318', 'type': 'augmented_assignment', 'children': ['319', '320'], 'value': '+='},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '320', 'type': 'binary_operator', 'children': ['321', '322'], 'value': '+'},{'id': '321', 'type': 'string', 'children': [], 'value': '" "'},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '323', 'type': 'return_statement', 'children': ['324']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'revision'},{'id': '325', 'type': 'return_statement', 'children': ['326']},{'id': '326', 'type': 'call', 'children': ['327', '328']},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'findUnaryMultiplications'},{'id': '328', 'type': 'argument_list', 'children': ['329']},{'id': '329', 'type': 'call', 'children': ['330', '331']},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'findConstantMultiplications'},{'id': '331', 'type': 'argument_list', 'children': ['332']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '333', 'type': 'return_statement', 'children': ['334']},{'id': '334', 'type': 'call', 'children': ['335', '336']},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'findImplicitMultiplications'},{'id': '336', 'type': 'argument_list', 'children': ['337']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'inp'} | def _preprocess(inp):
inp = re.sub(r'(\b)a(\b)', r'\g<1>one\g<2>', inp)
inp = re.sub(r'to the (.*) power', r'to \g<1>', inp)
inp = re.sub(r'to the (.*?)(\b)', r'to \g<1>\g<2>', inp)
inp = re.sub(r'log of', r'log', inp)
inp = re.sub(r'(square )?root( of)?', r'sqrt', inp)
inp = re.sub(r'squared', r'to two', inp)
inp = re.sub(r'cubed', r'to three', inp)
inp = re.sub(r'divided?( by)?', r'divide', inp)
inp = re.sub(r'(\b)over(\b)', r'\g<1>divide\g<2>', inp)
inp = re.sub(r'(\b)EE(\b)', r'\g<1>e\g<2>', inp)
inp = re.sub(r'(\b)E(\b)', r'\g<1>e\g<2>', inp)
inp = re.sub(r'(\b)pie(\b)', r'\g<1>pi\g<2>', inp)
inp = re.sub(r'(\b)PI(\b)', r'\g<1>pi\g<2>', inp)
def findImplicitMultiplications(inp):
def findConstantMultiplications(inp):
split = inp.split(' ')
revision = ""
converter = NumberService()
for i, w in enumerate(split):
if i > 0 and w in MathService.__constants__:
if converter.isValid(split[i - 1]):
revision += " times"
if not revision:
revision = w
else:
revision += " " + w
return revision
def findUnaryMultiplications(inp):
split = inp.split(' ')
revision = ""
for i, w in enumerate(split):
if i > 0 and w in MathService.__unaryOperators__:
last_op = split[i - 1]
binary = last_op in MathService.__binaryOperators__
unary = last_op in MathService.__unaryOperators__
if last_op and not (binary or unary):
revision += " times"
if not revision:
revision = w
else:
revision += " " + w
return revision
return findUnaryMultiplications(findConstantMultiplications(inp))
return findImplicitMultiplications(inp) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'parseEquation'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '6', 'type': 'block', 'children': ['7', '16', '25', '106', '233', '242']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '10', 'type': 'call', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'MathService'},{'id': '13', 'type': 'identifier', 'children': [], 'value': '_preprocess'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'string', 'children': [], 'value': "' '"},{'id': '25', 'type': 'for_statement', 'children': ['26', '29', '33']},{'id': '26', 'type': 'pattern_list', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'if_statement', 'children': ['35', '40']},{'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': 'in'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '39', 'type': 'identifier', 'children': [], 'value': '__unaryOperators__'},{'id': '40', 'type': 'block', 'children': ['41', '49', '62', '77', '92']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '44', 'type': 'subscript', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': '__unaryOperators__'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'eq1'},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'string', 'children': [], 'value': "' '"},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'subscript', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '59', 'type': 'slice', 'children': ['60', '61']},{'id': '60', 'type': 'colon', 'children': []},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'assignment', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'eq2'},{'id': '65', 'type': 'call', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'string', 'children': [], 'value': "' '"},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'subscript', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '72', 'type': 'slice', 'children': ['73', '76']},{'id': '73', 'type': 'binary_operator', 'children': ['74', '75'], 'value': '+'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '75', 'type': 'integer', 'children': [], 'value': '1'},{'id': '76', 'type': 'colon', 'children': []},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '80', 'type': 'call', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'MathService'},{'id': '83', 'type': 'identifier', 'children': [], 'value': '_applyUnary'},{'id': '84', 'type': 'argument_list', 'children': ['85', '91']},{'id': '85', 'type': 'call', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'parseEquation'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'eq2'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '92', 'type': 'return_statement', 'children': ['93']},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'parseEquation'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'binary_operator', 'children': ['99', '102'], 'value': '+'},{'id': '99', 'type': 'binary_operator', 'children': ['100', '101'], 'value': '+'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'eq1'},{'id': '101', 'type': 'string', 'children': [], 'value': '" "'},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '106', 'type': 'function_definition', 'children': ['107', '108', '110']},{'id': '107', 'type': 'function_name', 'children': [], 'value': 'extractNumbersAndSymbols'},{'id': '108', 'type': 'parameters', 'children': ['109']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '110', 'type': 'block', 'children': ['111', '115', '119', '123', '177', '187', '218', '229']},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'assignment', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '114', 'type': 'list', 'children': [], 'value': '[]'},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'assignment', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'symbols'},{'id': '118', 'type': 'list', 'children': [], 'value': '[]'},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'next_number'},{'id': '122', 'type': 'string', 'children': [], 'value': '""'},{'id': '123', 'type': 'for_statement', 'children': ['124', '125', '131']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '125', 'type': 'call', 'children': ['126', '129']},{'id': '126', 'type': 'attribute', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '129', 'type': 'argument_list', 'children': ['130']},{'id': '130', 'type': 'string', 'children': [], 'value': "' '"},{'id': '131', 'type': 'block', 'children': ['132']},{'id': '132', 'type': 'if_statement', 'children': ['133', '138', '164']},{'id': '133', 'type': 'comparison_operator', 'children': ['134', '135'], 'value': 'in'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '135', 'type': 'attribute', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '137', 'type': 'identifier', 'children': [], 'value': '__binaryOperators__'},{'id': '138', 'type': 'block', 'children': ['139', '150']},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'call', 'children': ['141', '144']},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'symbols'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'subscript', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '148', 'type': 'identifier', 'children': [], 'value': '__binaryOperators__'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '150', 'type': 'if_statement', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'next_number'},{'id': '152', 'type': 'block', 'children': ['153', '160']},{'id': '153', 'type': 'expression_statement', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '158', 'type': 'argument_list', 'children': ['159']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'next_number'},{'id': '160', 'type': 'expression_statement', 'children': ['161']},{'id': '161', 'type': 'assignment', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'next_number'},{'id': '163', 'type': 'string', 'children': [], 'value': '""'},{'id': '164', 'type': 'else_clause', 'children': ['165']},{'id': '165', 'type': 'block', 'children': ['166', '173']},{'id': '166', 'type': 'if_statement', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'next_number'},{'id': '168', 'type': 'block', 'children': ['169']},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'augmented_assignment', 'children': ['171', '172'], 'value': '+='},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'next_number'},{'id': '172', 'type': 'string', 'children': [], 'value': '" "'},{'id': '173', 'type': 'expression_statement', 'children': ['174']},{'id': '174', 'type': 'augmented_assignment', 'children': ['175', '176'], 'value': '+='},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'next_number'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'w'},{'id': '177', 'type': 'if_statement', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'next_number'},{'id': '179', 'type': 'block', 'children': ['180']},{'id': '180', 'type': 'expression_statement', 'children': ['181']},{'id': '181', 'type': 'call', 'children': ['182', '185']},{'id': '182', 'type': 'attribute', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '185', 'type': 'argument_list', 'children': ['186']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'next_number'},{'id': '187', 'type': 'function_definition', 'children': ['188', '189', '191']},{'id': '188', 'type': 'function_name', 'children': [], 'value': 'convert'},{'id': '189', 'type': 'parameters', 'children': ['190']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '191', 'type': 'block', 'children': ['192', '205', '211']},{'id': '192', 'type': 'if_statement', 'children': ['193', '198']},{'id': '193', 'type': 'comparison_operator', 'children': ['194', '195'], 'value': 'in'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '195', 'type': 'attribute', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '197', 'type': 'identifier', 'children': [], 'value': '__constants__'},{'id': '198', 'type': 'block', 'children': ['199']},{'id': '199', 'type': 'return_statement', 'children': ['200']},{'id': '200', 'type': 'subscript', 'children': ['201', '204']},{'id': '201', 'type': 'attribute', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '203', 'type': 'identifier', 'children': [], 'value': '__constants__'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '205', 'type': 'expression_statement', 'children': ['206']},{'id': '206', 'type': 'assignment', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '208', 'type': 'call', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'NumberService'},{'id': '210', 'type': 'argument_list', 'children': []},{'id': '211', 'type': 'return_statement', 'children': ['212']},{'id': '212', 'type': 'call', 'children': ['213', '216']},{'id': '213', 'type': 'attribute', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'parse'},{'id': '216', 'type': 'argument_list', 'children': ['217']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '218', 'type': 'expression_statement', 'children': ['219']},{'id': '219', 'type': 'assignment', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '221', 'type': 'list_comprehension', 'children': ['222', '226']},{'id': '222', 'type': 'call', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'convert'},{'id': '224', 'type': 'argument_list', 'children': ['225']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '226', 'type': 'for_in_clause', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '229', 'type': 'return_statement', 'children': ['230']},{'id': '230', 'type': 'expression_list', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'symbols'},{'id': '233', 'type': 'expression_statement', 'children': ['234']},{'id': '234', 'type': 'assignment', 'children': ['235', '238']},{'id': '235', 'type': 'pattern_list', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'symbols'},{'id': '238', 'type': 'call', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'extractNumbersAndSymbols'},{'id': '240', 'type': 'argument_list', 'children': ['241']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '242', 'type': 'return_statement', 'children': ['243']},{'id': '243', 'type': 'call', 'children': ['244', '247']},{'id': '244', 'type': 'attribute', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'MathService'},{'id': '246', 'type': 'identifier', 'children': [], 'value': '_calculate'},{'id': '247', 'type': 'argument_list', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'symbols'} | def parseEquation(self, inp):
inp = MathService._preprocess(inp)
split = inp.split(' ')
for i, w in enumerate(split):
if w in self.__unaryOperators__:
op = self.__unaryOperators__[w]
eq1 = ' '.join(split[:i])
eq2 = ' '.join(split[i + 1:])
result = MathService._applyUnary(self.parseEquation(eq2), op)
return self.parseEquation(eq1 + " " + str(result))
def extractNumbersAndSymbols(inp):
numbers = []
symbols = []
next_number = ""
for w in inp.split(' '):
if w in self.__binaryOperators__:
symbols.append(self.__binaryOperators__[w])
if next_number:
numbers.append(next_number)
next_number = ""
else:
if next_number:
next_number += " "
next_number += w
if next_number:
numbers.append(next_number)
def convert(n):
if n in self.__constants__:
return self.__constants__[n]
converter = NumberService()
return converter.parse(n)
numbers = [convert(n) for n in numbers]
return numbers, symbols
numbers, symbols = extractNumbersAndSymbols(inp)
return MathService._calculate(numbers, symbols) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'activate'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'plugins'},{'id': '7', 'type': 'list', 'children': [], 'value': '[]'},{'id': '8', 'type': 'block', 'children': ['9', '18', '36', '52', '56', '286']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'call', 'children': ['11', '16']},{'id': '11', 'type': 'attribute', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '16', 'type': 'argument_list', 'children': ['17']},{'id': '17', 'type': 'string', 'children': [], 'value': '"Plugins Activation started"'},{'id': '18', 'type': 'if_statement', 'children': ['19', '25']},{'id': '19', 'type': 'not_operator', 'children': ['20']},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '22', 'type': 'argument_list', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'plugins'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '25', 'type': 'block', 'children': ['26']},{'id': '26', 'type': 'raise_statement', 'children': ['27']},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'AttributeError'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'binary_operator', 'children': ['31', '32'], 'value': '%'},{'id': '31', 'type': 'string', 'children': [], 'value': '"plugins must be a list, not %s"'},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'plugins'},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '43']},{'id': '38', 'type': 'attribute', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '41', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'binary_operator', 'children': ['45', '46'], 'value': '%'},{'id': '45', 'type': 'string', 'children': [], 'value': '"Plugins to activate: %s"'},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'string', 'children': [], 'value': '", "'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'plugins'},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'plugins_activated'},{'id': '55', 'type': 'list', 'children': [], 'value': '[]'},{'id': '56', 'type': 'for_statement', 'children': ['57', '58', '59']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'plugins'},{'id': '59', 'type': 'block', 'children': ['60', '78', '179']},{'id': '60', 'type': 'if_statement', 'children': ['61', '67']},{'id': '61', 'type': 'not_operator', 'children': ['62']},{'id': '62', 'type': 'call', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '64', 'type': 'argument_list', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'raise_statement', 'children': ['69']},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'AttributeError'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '%'},{'id': '73', 'type': 'string', 'children': [], 'value': '"plugin name must be a str, not %s"'},{'id': '74', 'type': 'call', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '76', 'type': 'argument_list', 'children': ['77']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '78', 'type': 'if_statement', 'children': ['79', '100']},{'id': '79', 'type': 'boolean_operator', 'children': ['80', '89'], 'value': 'and'},{'id': '80', 'type': 'comparison_operator', 'children': ['81', '82'], 'value': 'not'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '82', 'type': 'call', 'children': ['83', '88']},{'id': '83', 'type': 'attribute', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '86', 'type': 'identifier', 'children': [], 'value': '_plugins'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '88', 'type': 'argument_list', 'children': []},{'id': '89', 'type': 'comparison_operator', 'children': ['90', '91'], 'value': 'in'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '91', 'type': 'call', 'children': ['92', '99']},{'id': '92', 'type': 'attribute', 'children': ['93', '98']},{'id': '93', 'type': 'attribute', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '97', 'type': 'identifier', 'children': [], 'value': '_classes'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '99', 'type': 'argument_list', 'children': []},{'id': '100', 'type': 'block', 'children': ['101', '110']},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '108']},{'id': '103', 'type': 'attribute', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '106', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'string', 'children': [], 'value': '"Initialisation needed before activation."'},{'id': '110', 'type': 'try_statement', 'children': ['111', '120']},{'id': '111', 'type': 'block', 'children': ['112']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'call', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'initialise_by_names'},{'id': '117', 'type': 'argument_list', 'children': ['118']},{'id': '118', 'type': 'list', 'children': ['119'], 'value': '[plugin_name]'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '120', 'type': 'except_clause', 'children': ['121', '125']},{'id': '121', 'type': 'as_pattern', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '123', 'type': 'as_pattern_target', 'children': ['124']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '125', 'type': 'block', 'children': ['126', '139']},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'call', 'children': ['128', '133']},{'id': '128', 'type': 'attribute', 'children': ['129', '132']},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '131', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '133', 'type': 'argument_list', 'children': ['134']},{'id': '134', 'type': 'binary_operator', 'children': ['135', '136'], 'value': '%'},{'id': '135', 'type': 'string', 'children': [], 'value': '"Couldn\'t initialise plugin %s. Reason %s"'},{'id': '136', 'type': 'tuple', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '139', 'type': 'if_statement', 'children': ['140', '145', '176']},{'id': '140', 'type': 'attribute', 'children': ['141', '144']},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '143', 'type': 'identifier', 'children': [], 'value': '_app'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'strict'},{'id': '145', 'type': 'block', 'children': ['146', '152', '167']},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'assignment', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '149', 'type': 'binary_operator', 'children': ['150', '151'], 'value': '%'},{'id': '150', 'type': 'string', 'children': [], 'value': '"Couldn\'t initialise plugin %s"'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '152', 'type': 'if_statement', 'children': ['153', '160']},{'id': '153', 'type': 'comparison_operator', 'children': ['154', '159'], 'value': '<'},{'id': '154', 'type': 'subscript', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'version_info'},{'id': '158', 'type': 'integer', 'children': [], 'value': '0'},{'id': '159', 'type': 'integer', 'children': [], 'value': '3'},{'id': '160', 'type': 'block', 'children': ['161']},{'id': '161', 'type': 'expression_statement', 'children': ['162']},{'id': '162', 'type': 'augmented_assignment', 'children': ['163', '164'], 'value': '+='},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '164', 'type': 'binary_operator', 'children': ['165', '166'], 'value': '%'},{'id': '165', 'type': 'string', 'children': [], 'value': '"Reason: %s"'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '167', 'type': 'expression_statement', 'children': ['168']},{'id': '168', 'type': 'call', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'raise_from'},{'id': '170', 'type': 'argument_list', 'children': ['171', '175']},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '176', 'type': 'else_clause', 'children': ['177']},{'id': '177', 'type': 'block', 'children': ['178']},{'id': '178', 'type': 'continue_statement', 'children': []},{'id': '179', 'type': 'if_statement', 'children': ['180', '189']},{'id': '180', 'type': 'comparison_operator', 'children': ['181', '182'], 'value': 'in'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '182', 'type': 'call', 'children': ['183', '188']},{'id': '183', 'type': 'attribute', 'children': ['184', '187']},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '186', 'type': 'identifier', 'children': [], 'value': '_plugins'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '188', 'type': 'argument_list', 'children': []},{'id': '189', 'type': 'block', 'children': ['190', '201']},{'id': '190', 'type': 'expression_statement', 'children': ['191']},{'id': '191', 'type': 'call', 'children': ['192', '197']},{'id': '192', 'type': 'attribute', 'children': ['193', '196']},{'id': '193', 'type': 'attribute', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '195', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '197', 'type': 'argument_list', 'children': ['198']},{'id': '198', 'type': 'binary_operator', 'children': ['199', '200'], 'value': '%'},{'id': '199', 'type': 'string', 'children': [], 'value': '"Activating plugin %s"'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '201', 'type': 'if_statement', 'children': ['202', '210', '262']},{'id': '202', 'type': 'not_operator', 'children': ['203']},{'id': '203', 'type': 'attribute', 'children': ['204', '209']},{'id': '204', 'type': 'subscript', 'children': ['205', '208']},{'id': '205', 'type': 'attribute', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '207', 'type': 'identifier', 'children': [], 'value': '_plugins'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'active'},{'id': '210', 'type': 'block', 'children': ['211']},{'id': '211', 'type': 'try_statement', 'children': ['212', '223', '242']},{'id': '212', 'type': 'block', 'children': ['213']},{'id': '213', 'type': 'expression_statement', 'children': ['214']},{'id': '214', 'type': 'call', 'children': ['215', '222']},{'id': '215', 'type': 'attribute', 'children': ['216', '221']},{'id': '216', 'type': 'subscript', 'children': ['217', '220']},{'id': '217', 'type': 'attribute', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '219', 'type': 'identifier', 'children': [], 'value': '_plugins'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'activate'},{'id': '222', 'type': 'argument_list', 'children': []},{'id': '223', 'type': 'except_clause', 'children': ['224', '228']},{'id': '224', 'type': 'as_pattern', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '226', 'type': 'as_pattern_target', 'children': ['227']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '228', 'type': 'block', 'children': ['229']},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'call', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'raise_from'},{'id': '232', 'type': 'argument_list', 'children': ['233', '241']},{'id': '233', 'type': 'call', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'PluginNotActivatableException'},{'id': '235', 'type': 'argument_list', 'children': ['236']},{'id': '236', 'type': 'binary_operator', 'children': ['237', '238'], 'value': '%'},{'id': '237', 'type': 'string', 'children': [], 'value': '"Plugin %s could not be activated: %s"'},{'id': '238', 'type': 'tuple', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '242', 'type': 'else_clause', 'children': ['243']},{'id': '243', 'type': 'block', 'children': ['244', '255']},{'id': '244', 'type': 'expression_statement', 'children': ['245']},{'id': '245', 'type': 'call', 'children': ['246', '251']},{'id': '246', 'type': 'attribute', 'children': ['247', '250']},{'id': '247', 'type': 'attribute', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '249', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '251', 'type': 'argument_list', 'children': ['252']},{'id': '252', 'type': 'binary_operator', 'children': ['253', '254'], 'value': '%'},{'id': '253', 'type': 'string', 'children': [], 'value': '"Plugin %s activated"'},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '255', 'type': 'expression_statement', 'children': ['256']},{'id': '256', 'type': 'call', 'children': ['257', '260']},{'id': '257', 'type': 'attribute', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'plugins_activated'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '260', 'type': 'argument_list', 'children': ['261']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '262', 'type': 'else_clause', 'children': ['263']},{'id': '263', 'type': 'block', 'children': ['264', '275']},{'id': '264', 'type': 'expression_statement', 'children': ['265']},{'id': '265', 'type': 'call', 'children': ['266', '271']},{'id': '266', 'type': 'attribute', 'children': ['267', '270']},{'id': '267', 'type': 'attribute', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '269', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '271', 'type': 'argument_list', 'children': ['272']},{'id': '272', 'type': 'binary_operator', 'children': ['273', '274'], 'value': '%'},{'id': '273', 'type': 'string', 'children': [], 'value': '"Plugin %s got already activated."'},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'plugin_name'},{'id': '275', 'type': 'if_statement', 'children': ['276', '281']},{'id': '276', 'type': 'attribute', 'children': ['277', '280']},{'id': '277', 'type': 'attribute', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '279', 'type': 'identifier', 'children': [], 'value': '_app'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'strict'},{'id': '281', 'type': 'block', 'children': ['282']},{'id': '282', 'type': 'raise_statement', 'children': ['283']},{'id': '283', 'type': 'call', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'PluginNotInitialisableException'},{'id': '285', 'type': 'argument_list', 'children': []},{'id': '286', 'type': 'expression_statement', 'children': ['287']},{'id': '287', 'type': 'call', 'children': ['288', '293']},{'id': '288', 'type': 'attribute', 'children': ['289', '292']},{'id': '289', 'type': 'attribute', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '291', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '293', 'type': 'argument_list', 'children': ['294']},{'id': '294', 'type': 'binary_operator', 'children': ['295', '296'], 'value': '%'},{'id': '295', 'type': 'string', 'children': [], 'value': '"Plugins activated: %s"'},{'id': '296', 'type': 'call', 'children': ['297', '300']},{'id': '297', 'type': 'attribute', 'children': ['298', '299']},{'id': '298', 'type': 'string', 'children': [], 'value': '", "'},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '300', 'type': 'argument_list', 'children': ['301']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'plugins_activated'} | def activate(self, plugins=[]):
self._log.debug("Plugins Activation started")
if not isinstance(plugins, list):
raise AttributeError("plugins must be a list, not %s" % type(plugins))
self._log.debug("Plugins to activate: %s" % ", ".join(plugins))
plugins_activated = []
for plugin_name in plugins:
if not isinstance(plugin_name, str):
raise AttributeError("plugin name must be a str, not %s" % type(plugin_name))
if plugin_name not in self._plugins.keys() and plugin_name in self.classes._classes.keys():
self._log.debug("Initialisation needed before activation.")
try:
self.initialise_by_names([plugin_name])
except Exception as e:
self._log.error("Couldn't initialise plugin %s. Reason %s" % (plugin_name, e))
if self._app.strict:
error = "Couldn't initialise plugin %s" % plugin_name
if sys.version_info[0] < 3:
error += "Reason: %s" % e
raise_from(Exception(error), e)
else:
continue
if plugin_name in self._plugins.keys():
self._log.debug("Activating plugin %s" % plugin_name)
if not self._plugins[plugin_name].active:
try:
self._plugins[plugin_name].activate()
except Exception as e:
raise_from(
PluginNotActivatableException("Plugin %s could not be activated: %s" % (plugin_name,
e)), e)
else:
self._log.debug("Plugin %s activated" % plugin_name)
plugins_activated.append(plugin_name)
else:
self._log.warning("Plugin %s got already activated." % plugin_name)
if self._app.strict:
raise PluginNotInitialisableException()
self._log.info("Plugins activated: %s" % ", ".join(plugins_activated)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'dispersion_ranking_NN'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'nnm'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'num_norm_avg'},{'id': '8', 'type': 'integer', 'children': [], 'value': '50'},{'id': '9', 'type': 'block', 'children': ['10', '17', '27', '41', '52', '70', '84', '102', '110', '128', '138']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'call', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'knn_avg'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'nnm'},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'D_avg'},{'id': '20', 'type': 'subscript', 'children': ['21', '26']},{'id': '21', 'type': 'attribute', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'adata'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'layers'},{'id': '26', 'type': 'string', 'children': [], 'value': "'X_knn_avg'"},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '32']},{'id': '29', 'type': 'pattern_list', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'mu'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'sf'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'mean_variance_axis'},{'id': '36', 'type': 'argument_list', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'D_avg'},{'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '40', 'type': 'integer', 'children': [], 'value': '0'},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'dispersions'},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'size'},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '59']},{'id': '54', 'type': 'subscript', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'dispersions'},{'id': '56', 'type': 'comparison_operator', 'children': ['57', '58'], 'value': '>'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'mu'},{'id': '58', 'type': 'integer', 'children': [], 'value': '0'},{'id': '59', 'type': 'binary_operator', 'children': ['60', '65'], 'value': '/'},{'id': '60', 'type': 'subscript', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '62', 'type': 'comparison_operator', 'children': ['63', '64'], 'value': '>'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'mu'},{'id': '64', 'type': 'integer', 'children': [], 'value': '0'},{'id': '65', 'type': 'subscript', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'mu'},{'id': '67', 'type': 'comparison_operator', 'children': ['68', '69'], 'value': '>'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'mu'},{'id': '69', 'type': 'integer', 'children': [], 'value': '0'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '79']},{'id': '72', 'type': 'subscript', 'children': ['73', '78']},{'id': '73', 'type': 'attribute', 'children': ['74', '77']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'adata'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '78', 'type': 'string', 'children': [], 'value': "'spatial_dispersions'"},{'id': '79', 'type': 'call', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'dispersions'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '83', 'type': 'argument_list', 'children': []},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'ma'},{'id': '87', 'type': 'call', 'children': ['88', '101']},{'id': '88', 'type': 'attribute', 'children': ['89', '100']},{'id': '89', 'type': 'subscript', 'children': ['90', '96']},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'dispersions'},{'id': '96', 'type': 'slice', 'children': ['97', '99']},{'id': '97', 'type': 'unary_operator', 'children': ['98'], 'value': '-'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'num_norm_avg'},{'id': '99', 'type': 'colon', 'children': []},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'mean'},{'id': '101', 'type': 'argument_list', 'children': []},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'assignment', 'children': ['104', '109']},{'id': '104', 'type': 'subscript', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'dispersions'},{'id': '106', 'type': 'comparison_operator', 'children': ['107', '108'], 'value': '>='},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'dispersions'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'ma'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'ma'},{'id': '110', 'type': 'expression_statement', 'children': ['111']},{'id': '111', 'type': 'assignment', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'weights'},{'id': '113', 'type': 'call', 'children': ['114', '127']},{'id': '114', 'type': 'attribute', 'children': ['115', '126']},{'id': '115', 'type': '()', 'children': ['116']},{'id': '116', 'type': 'binary_operator', 'children': ['117', '125'], 'value': '**'},{'id': '117', 'type': '()', 'children': ['118']},{'id': '118', 'type': 'binary_operator', 'children': ['119', '120'], 'value': '/'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'dispersions'},{'id': '120', 'type': 'call', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'dispersions'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '124', 'type': 'argument_list', 'children': []},{'id': '125', 'type': 'float', 'children': [], 'value': '0.5'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'flatten'},{'id': '127', 'type': 'argument_list', 'children': []},{'id': '128', 'type': 'expression_statement', 'children': ['129']},{'id': '129', 'type': 'assignment', 'children': ['130', '137']},{'id': '130', 'type': 'subscript', 'children': ['131', '136']},{'id': '131', 'type': 'attribute', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'adata'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '136', 'type': 'string', 'children': [], 'value': "'weights'"},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'weights'},{'id': '138', 'type': 'return_statement', 'children': ['139']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'weights'} | def dispersion_ranking_NN(self, nnm, num_norm_avg=50):
self.knn_avg(nnm)
D_avg = self.adata.layers['X_knn_avg']
mu, var = sf.mean_variance_axis(D_avg, axis=0)
dispersions = np.zeros(var.size)
dispersions[mu > 0] = var[mu > 0] / mu[mu > 0]
self.adata.var['spatial_dispersions'] = dispersions.copy()
ma = np.sort(dispersions)[-num_norm_avg:].mean()
dispersions[dispersions >= ma] = ma
weights = ((dispersions / dispersions.max())**0.5).flatten()
self.adata.var['weights'] = weights
return weights |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '31']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'scatter'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26', '29']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'projection'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'cmap'},{'id': '13', 'type': 'string', 'children': [], 'value': "'rainbow'"},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'linewidth'},{'id': '16', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'edgecolor'},{'id': '19', 'type': 'string', 'children': [], 'value': "'k'"},{'id': '20', 'type': 'default_parameter', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'axes'},{'id': '22', 'type': 'None', 'children': []},{'id': '23', 'type': 'default_parameter', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'colorbar'},{'id': '25', 'type': 'True', 'children': []},{'id': '26', 'type': 'default_parameter', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '28', 'type': 'integer', 'children': [], 'value': '10'},{'id': '29', 'type': 'dictionary_splat_pattern', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'if_statement', 'children': ['33', '36', '42']},{'id': '33', 'type': '()', 'children': ['34']},{'id': '34', 'type': 'not_operator', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'PLOTTING'},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'string', 'children': [], 'value': '"matplotlib not installed!"'},{'id': '42', 'type': 'else_clause', 'children': ['43']},{'id': '43', 'type': 'block', 'children': ['44', '124', '144']},{'id': '44', 'type': 'if_statement', 'children': ['45', '51', '74', '118']},{'id': '45', 'type': '()', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '48', 'type': 'argument_list', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'projection'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'try_statement', 'children': ['53', '64']},{'id': '53', 'type': 'block', 'children': ['54']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '57', 'type': 'subscript', 'children': ['58', '63']},{'id': '58', 'type': 'attribute', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'adata'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'obsm'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'projection'},{'id': '64', 'type': 'except_clause', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '66', 'type': 'block', 'children': ['67']},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'concatenated_string', 'children': ['72', '73']},{'id': '72', 'type': 'string', 'children': [], 'value': "'Please create a projection first using run_umap or'"},{'id': '73', 'type': 'string', 'children': [], 'value': "'run_tsne'"},{'id': '74', 'type': 'elif_clause', 'children': ['75', '79']},{'id': '75', 'type': '()', 'children': ['76']},{'id': '76', 'type': 'comparison_operator', 'children': ['77', '78'], 'value': 'is'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'projection'},{'id': '78', 'type': 'None', 'children': []},{'id': '79', 'type': 'block', 'children': ['80']},{'id': '80', 'type': 'try_statement', 'children': ['81', '92']},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'assignment', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '85', 'type': 'subscript', 'children': ['86', '91']},{'id': '86', 'type': 'attribute', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'adata'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'obsm'},{'id': '91', 'type': 'string', 'children': [], 'value': "'X_umap'"},{'id': '92', 'type': 'except_clause', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '94', 'type': 'block', 'children': ['95']},{'id': '95', 'type': 'try_statement', 'children': ['96', '107']},{'id': '96', 'type': 'block', 'children': ['97']},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '100', 'type': 'subscript', 'children': ['101', '106']},{'id': '101', 'type': 'attribute', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'adata'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'obsm'},{'id': '106', 'type': 'string', 'children': [], 'value': "'X_tsne'"},{'id': '107', 'type': 'except_clause', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '109', 'type': 'block', 'children': ['110', '117']},{'id': '110', 'type': 'expression_statement', 'children': ['111']},{'id': '111', 'type': 'call', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'concatenated_string', 'children': ['115', '116']},{'id': '115', 'type': 'string', 'children': [], 'value': '"Please create either a t-SNE or UMAP projection"'},{'id': '116', 'type': 'string', 'children': [], 'value': '"first."'},{'id': '117', 'type': 'return_statement', 'children': []},{'id': '118', 'type': 'else_clause', 'children': ['119']},{'id': '119', 'type': 'block', 'children': ['120']},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'assignment', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'projection'},{'id': '124', 'type': 'if_statement', 'children': ['125', '129']},{'id': '125', 'type': '()', 'children': ['126']},{'id': '126', 'type': 'comparison_operator', 'children': ['127', '128'], 'value': 'is'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'axes'},{'id': '128', 'type': 'None', 'children': []},{'id': '129', 'type': 'block', 'children': ['130', '136']},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'plt'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'figure'},{'id': '135', 'type': 'argument_list', 'children': []},{'id': '136', 'type': 'expression_statement', 'children': ['137']},{'id': '137', 'type': 'assignment', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'axes'},{'id': '139', 'type': 'call', 'children': ['140', '143']},{'id': '140', 'type': 'attribute', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'plt'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'gca'},{'id': '143', 'type': 'argument_list', 'children': []},{'id': '144', 'type': 'if_statement', 'children': ['145', '149', '177']},{'id': '145', 'type': '()', 'children': ['146']},{'id': '146', 'type': 'comparison_operator', 'children': ['147', '148'], 'value': 'is'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '148', 'type': 'None', 'children': []},{'id': '149', 'type': 'block', 'children': ['150']},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'call', 'children': ['152', '155']},{'id': '152', 'type': 'attribute', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'plt'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'scatter'},{'id': '155', 'type': 'argument_list', 'children': ['156', '161', '166', '169', '172', '175']},{'id': '156', 'type': 'subscript', 'children': ['157', '158', '160']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '158', 'type': 'slice', 'children': ['159']},{'id': '159', 'type': 'colon', 'children': []},{'id': '160', 'type': 'integer', 'children': [], 'value': '0'},{'id': '161', 'type': 'subscript', 'children': ['162', '163', '165']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '163', 'type': 'slice', 'children': ['164']},{'id': '164', 'type': 'colon', 'children': []},{'id': '165', 'type': 'integer', 'children': [], 'value': '1'},{'id': '166', 'type': 'keyword_argument', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '169', 'type': 'keyword_argument', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'linewidth'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'linewidth'},{'id': '172', 'type': 'keyword_argument', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'edgecolor'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'edgecolor'},{'id': '175', 'type': 'dictionary_splat', 'children': ['176']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '177', 'type': 'else_clause', 'children': ['178']},{'id': '178', 'type': 'block', 'children': ['179', '207']},{'id': '179', 'type': 'if_statement', 'children': ['180', '185']},{'id': '180', 'type': 'call', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '182', 'type': 'argument_list', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '185', 'type': 'block', 'children': ['186']},{'id': '186', 'type': 'try_statement', 'children': ['187', '202']},{'id': '187', 'type': 'block', 'children': ['188']},{'id': '188', 'type': 'expression_statement', 'children': ['189']},{'id': '189', 'type': 'assignment', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '191', 'type': 'call', 'children': ['192', '201']},{'id': '192', 'type': 'attribute', 'children': ['193', '200']},{'id': '193', 'type': 'subscript', 'children': ['194', '199']},{'id': '194', 'type': 'attribute', 'children': ['195', '198']},{'id': '195', 'type': 'attribute', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'adata'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'obs'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'get_values'},{'id': '201', 'type': 'argument_list', 'children': []},{'id': '202', 'type': 'except_clause', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '204', 'type': 'block', 'children': ['205']},{'id': '205', 'type': 'expression_statement', 'children': ['206']},{'id': '206', 'type': 'integer', 'children': [], 'value': '0'},{'id': '207', 'type': 'if_statement', 'children': ['208', '242', '331']},{'id': '208', 'type': '()', 'children': ['209']},{'id': '209', 'type': 'boolean_operator', 'children': ['210', '228'], 'value': 'and'},{'id': '210', 'type': '()', 'children': ['211']},{'id': '211', 'type': 'boolean_operator', 'children': ['212', '219'], 'value': 'or'},{'id': '212', 'type': 'call', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '214', 'type': 'argument_list', 'children': ['215', '218']},{'id': '215', 'type': 'subscript', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '217', 'type': 'integer', 'children': [], 'value': '0'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '219', 'type': 'call', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '221', 'type': 'argument_list', 'children': ['222', '225']},{'id': '222', 'type': 'subscript', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '224', 'type': 'integer', 'children': [], 'value': '0'},{'id': '225', 'type': 'attribute', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'str_'},{'id': '228', 'type': '()', 'children': ['229']},{'id': '229', 'type': 'boolean_operator', 'children': ['230', '237'], 'value': 'or'},{'id': '230', 'type': 'call', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '232', 'type': 'argument_list', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '234', 'type': 'attribute', 'children': ['235', '236']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '237', 'type': 'call', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '239', 'type': 'argument_list', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '242', 'type': 'block', 'children': ['243', '252', '266', '301']},{'id': '243', 'type': 'expression_statement', 'children': ['244']},{'id': '244', 'type': 'assignment', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '246', 'type': 'call', 'children': ['247', '250']},{'id': '247', 'type': 'attribute', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'ut'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'convert_annotations'},{'id': '250', 'type': 'argument_list', 'children': ['251']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '252', 'type': 'expression_statement', 'children': ['253']},{'id': '253', 'type': 'assignment', 'children': ['254', '257']},{'id': '254', 'type': 'pattern_list', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'ui'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'ai'},{'id': '257', 'type': 'call', 'children': ['258', '261']},{'id': '258', 'type': 'attribute', 'children': ['259', '260']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'unique'},{'id': '261', 'type': 'argument_list', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '263', 'type': 'keyword_argument', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'return_index'},{'id': '265', 'type': 'True', 'children': []},{'id': '266', 'type': 'expression_statement', 'children': ['267']},{'id': '267', 'type': 'assignment', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'cax'},{'id': '269', 'type': 'call', 'children': ['270', '273']},{'id': '270', 'type': 'attribute', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'axes'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'scatter'},{'id': '273', 'type': 'argument_list', 'children': ['274', '279', '284', '287', '290', '293', '296', '299']},{'id': '274', 'type': 'subscript', 'children': ['275', '276', '278']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '276', 'type': 'slice', 'children': ['277']},{'id': '277', 'type': 'colon', 'children': []},{'id': '278', 'type': 'integer', 'children': [], 'value': '0'},{'id': '279', 'type': 'subscript', 'children': ['280', '281', '283']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '281', 'type': 'slice', 'children': ['282']},{'id': '282', 'type': 'colon', 'children': []},{'id': '283', 'type': 'integer', 'children': [], 'value': '1'},{'id': '284', 'type': 'keyword_argument', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '287', 'type': 'keyword_argument', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'cmap'},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'cmap'},{'id': '290', 'type': 'keyword_argument', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '292', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '293', 'type': 'keyword_argument', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'linewidth'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'linewidth'},{'id': '296', 'type': 'keyword_argument', 'children': ['297', '298']},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'edgecolor'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'edgecolor'},{'id': '299', 'type': 'dictionary_splat', 'children': ['300']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '301', 'type': 'if_statement', 'children': ['302', '304']},{'id': '302', 'type': '()', 'children': ['303']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'colorbar'},{'id': '304', 'type': 'block', 'children': ['305', '320']},{'id': '305', 'type': 'expression_statement', 'children': ['306']},{'id': '306', 'type': 'assignment', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'cbar'},{'id': '308', 'type': 'call', 'children': ['309', '312']},{'id': '309', 'type': 'attribute', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'plt'},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'colorbar'},{'id': '312', 'type': 'argument_list', 'children': ['313', '314', '317']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'cax'},{'id': '314', 'type': 'keyword_argument', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'axes'},{'id': '317', 'type': 'keyword_argument', 'children': ['318', '319']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'ticks'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'ui'},{'id': '320', 'type': 'expression_statement', 'children': ['321']},{'id': '321', 'type': 'call', 'children': ['322', '327']},{'id': '322', 'type': 'attribute', 'children': ['323', '326']},{'id': '323', 'type': 'attribute', 'children': ['324', '325']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'cbar'},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'set_yticklabels'},{'id': '327', 'type': 'argument_list', 'children': ['328']},{'id': '328', 'type': 'subscript', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'ai'},{'id': '331', 'type': 'else_clause', 'children': ['332']},{'id': '332', 'type': 'block', 'children': ['333', '354', '358', '393']},{'id': '333', 'type': 'if_statement', 'children': ['334', '349']},{'id': '334', 'type': 'not_operator', 'children': ['335']},{'id': '335', 'type': '()', 'children': ['336']},{'id': '336', 'type': 'boolean_operator', 'children': ['337', '344'], 'value': 'or'},{'id': '337', 'type': 'call', 'children': ['338', '339']},{'id': '338', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '339', 'type': 'argument_list', 'children': ['340', '341']},{'id': '340', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '341', 'type': 'attribute', 'children': ['342', '343']},{'id': '342', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '344', 'type': 'call', 'children': ['345', '346']},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '346', 'type': 'argument_list', 'children': ['347', '348']},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '348', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '349', 'type': 'block', 'children': ['350']},{'id': '350', 'type': 'expression_statement', 'children': ['351']},{'id': '351', 'type': 'assignment', 'children': ['352', '353']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'colorbar'},{'id': '353', 'type': 'False', 'children': []},{'id': '354', 'type': 'expression_statement', 'children': ['355']},{'id': '355', 'type': 'assignment', 'children': ['356', '357']},{'id': '356', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '357', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '358', 'type': 'expression_statement', 'children': ['359']},{'id': '359', 'type': 'assignment', 'children': ['360', '361']},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'cax'},{'id': '361', 'type': 'call', 'children': ['362', '365']},{'id': '362', 'type': 'attribute', 'children': ['363', '364']},{'id': '363', 'type': 'identifier', 'children': [], 'value': 'axes'},{'id': '364', 'type': 'identifier', 'children': [], 'value': 'scatter'},{'id': '365', 'type': 'argument_list', 'children': ['366', '371', '376', '379', '382', '385', '388', '391']},{'id': '366', 'type': 'subscript', 'children': ['367', '368', '370']},{'id': '367', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '368', 'type': 'slice', 'children': ['369']},{'id': '369', 'type': 'colon', 'children': []},{'id': '370', 'type': 'integer', 'children': [], 'value': '0'},{'id': '371', 'type': 'subscript', 'children': ['372', '373', '375']},{'id': '372', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '373', 'type': 'slice', 'children': ['374']},{'id': '374', 'type': 'colon', 'children': []},{'id': '375', 'type': 'integer', 'children': [], 'value': '1'},{'id': '376', 'type': 'keyword_argument', 'children': ['377', '378']},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '378', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '379', 'type': 'keyword_argument', 'children': ['380', '381']},{'id': '380', 'type': 'identifier', 'children': [], 'value': 'cmap'},{'id': '381', 'type': 'identifier', 'children': [], 'value': 'cmap'},{'id': '382', 'type': 'keyword_argument', 'children': ['383', '384']},{'id': '383', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '384', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '385', 'type': 'keyword_argument', 'children': ['386', '387']},{'id': '386', 'type': 'identifier', 'children': [], 'value': 'linewidth'},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'linewidth'},{'id': '388', 'type': 'keyword_argument', 'children': ['389', '390']},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'edgecolor'},{'id': '390', 'type': 'identifier', 'children': [], 'value': 'edgecolor'},{'id': '391', 'type': 'dictionary_splat', 'children': ['392']},{'id': '392', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '393', 'type': 'if_statement', 'children': ['394', '396']},{'id': '394', 'type': '()', 'children': ['395']},{'id': '395', 'type': 'identifier', 'children': [], 'value': 'colorbar'},{'id': '396', 'type': 'block', 'children': ['397']},{'id': '397', 'type': 'expression_statement', 'children': ['398']},{'id': '398', 'type': 'call', 'children': ['399', '402']},{'id': '399', 'type': 'attribute', 'children': ['400', '401']},{'id': '400', 'type': 'identifier', 'children': [], 'value': 'plt'},{'id': '401', 'type': 'identifier', 'children': [], 'value': 'colorbar'},{'id': '402', 'type': 'argument_list', 'children': ['403', '404']},{'id': '403', 'type': 'identifier', 'children': [], 'value': 'cax'},{'id': '404', 'type': 'keyword_argument', 'children': ['405', '406']},{'id': '405', 'type': 'identifier', 'children': [], 'value': 'ax'},{'id': '406', 'type': 'identifier', 'children': [], 'value': 'axes'} | def scatter(self, projection=None, c=None, cmap='rainbow', linewidth=0.0,
edgecolor='k', axes=None, colorbar=True, s=10, **kwargs):
if (not PLOTTING):
print("matplotlib not installed!")
else:
if(isinstance(projection, str)):
try:
dt = self.adata.obsm[projection]
except KeyError:
print('Please create a projection first using run_umap or'
'run_tsne')
elif(projection is None):
try:
dt = self.adata.obsm['X_umap']
except KeyError:
try:
dt = self.adata.obsm['X_tsne']
except KeyError:
print("Please create either a t-SNE or UMAP projection"
"first.")
return
else:
dt = projection
if(axes is None):
plt.figure()
axes = plt.gca()
if(c is None):
plt.scatter(dt[:, 0], dt[:, 1], s=s,
linewidth=linewidth, edgecolor=edgecolor, **kwargs)
else:
if isinstance(c, str):
try:
c = self.adata.obs[c].get_values()
except KeyError:
0
if((isinstance(c[0], str) or isinstance(c[0], np.str_)) and
(isinstance(c, np.ndarray) or isinstance(c, list))):
i = ut.convert_annotations(c)
ui, ai = np.unique(i, return_index=True)
cax = axes.scatter(dt[:,0], dt[:,1], c=i, cmap=cmap, s=s,
linewidth=linewidth,
edgecolor=edgecolor,
**kwargs)
if(colorbar):
cbar = plt.colorbar(cax, ax=axes, ticks=ui)
cbar.ax.set_yticklabels(c[ai])
else:
if not (isinstance(c, np.ndarray) or isinstance(c, list)):
colorbar = False
i = c
cax = axes.scatter(dt[:,0], dt[:,1], c=i, cmap=cmap, s=s,
linewidth=linewidth,
edgecolor=edgecolor,
**kwargs)
if(colorbar):
plt.colorbar(cax, ax=axes) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'parseFloat'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'words'},{'id': '6', 'type': 'block', 'children': ['7', '86', '236', '243', '248', '255', '260']},{'id': '7', 'type': 'function_definition', 'children': ['8', '9', '11']},{'id': '8', 'type': 'function_name', 'children': [], 'value': 'pointFloat'},{'id': '9', 'type': 'parameters', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'words'},{'id': '11', 'type': 'block', 'children': ['12', '22', '84']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '19', 'type': 'argument_list', 'children': ['20', '21']},{'id': '20', 'type': 'string', 'children': [], 'value': "r'(.*) point (.*)'"},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'words'},{'id': '22', 'type': 'if_statement', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '24', 'type': 'block', 'children': ['25', '34', '43', '47', '51', '75']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'whole'},{'id': '28', 'type': 'call', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'integer', 'children': [], 'value': '1'},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'integer', 'children': [], 'value': '2'},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'assignment', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '46', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '47', 'type': 'expression_statement', 'children': ['48']},{'id': '48', 'type': 'assignment', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'coeff'},{'id': '50', 'type': 'float', 'children': [], 'value': '0.10'},{'id': '51', 'type': 'for_statement', 'children': ['52', '53', '59']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'digit'},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'string', 'children': [], 'value': "' '"},{'id': '59', 'type': 'block', 'children': ['60', '71']},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'augmented_assignment', 'children': ['62', '63'], 'value': '+='},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '63', 'type': 'binary_operator', 'children': ['64', '65'], 'value': '*'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'coeff'},{'id': '65', 'type': 'call', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'parse'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'digit'},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'augmented_assignment', 'children': ['73', '74'], 'value': '/='},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'coeff'},{'id': '74', 'type': 'float', 'children': [], 'value': '10.0'},{'id': '75', 'type': 'return_statement', 'children': ['76']},{'id': '76', 'type': 'binary_operator', 'children': ['77', '83'], 'value': '+'},{'id': '77', 'type': 'call', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'parseInt'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'whole'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '84', 'type': 'return_statement', 'children': ['85']},{'id': '85', 'type': 'None', 'children': []},{'id': '86', 'type': 'function_definition', 'children': ['87', '88', '90']},{'id': '87', 'type': 'function_name', 'children': [], 'value': 'fractionFloat'},{'id': '88', 'type': 'parameters', 'children': ['89']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'words'},{'id': '90', 'type': 'block', 'children': ['91', '101', '234']},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '94', 'type': 'call', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '98', 'type': 'argument_list', 'children': ['99', '100']},{'id': '99', 'type': 'string', 'children': [], 'value': "r'(.*) and (.*)'"},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'words'},{'id': '101', 'type': 'if_statement', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '103', 'type': 'block', 'children': ['104', '118', '127', '138', '149', '158', '166', '174']},{'id': '104', 'type': 'expression_statement', 'children': ['105']},{'id': '105', 'type': 'assignment', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'whole'},{'id': '107', 'type': 'call', 'children': ['108', '111']},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'parseInt'},{'id': '111', 'type': 'argument_list', 'children': ['112']},{'id': '112', 'type': 'call', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '116', 'type': 'argument_list', 'children': ['117']},{'id': '117', 'type': 'integer', 'children': [], 'value': '1'},{'id': '118', 'type': 'expression_statement', 'children': ['119']},{'id': '119', 'type': 'assignment', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '121', 'type': 'call', 'children': ['122', '125']},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'integer', 'children': [], 'value': '2'},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'assignment', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '130', 'type': 'call', 'children': ['131', '134']},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '134', 'type': 'argument_list', 'children': ['135', '136', '137']},{'id': '135', 'type': 'string', 'children': [], 'value': "r'(\\w+)s(\\b)'"},{'id': '136', 'type': 'string', 'children': [], 'value': "'\\g<1>\\g<2>'"},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '141', 'type': 'call', 'children': ['142', '145']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '145', 'type': 'argument_list', 'children': ['146', '147', '148']},{'id': '146', 'type': 'string', 'children': [], 'value': "r'(\\b)a(\\b)'"},{'id': '147', 'type': 'string', 'children': [], 'value': "'\\g<1>one\\g<2>'"},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'assignment', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '152', 'type': 'call', 'children': ['153', '156']},{'id': '153', 'type': 'attribute', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '156', 'type': 'argument_list', 'children': ['157']},{'id': '157', 'type': 'string', 'children': [], 'value': "' '"},{'id': '158', 'type': 'expression_statement', 'children': ['159']},{'id': '159', 'type': 'assignment', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'num'},{'id': '161', 'type': 'subscript', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '163', 'type': 'slice', 'children': ['164', '165']},{'id': '164', 'type': 'colon', 'children': []},{'id': '165', 'type': 'integer', 'children': [], 'value': '1'},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'denom'},{'id': '169', 'type': 'subscript', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '171', 'type': 'slice', 'children': ['172', '173']},{'id': '172', 'type': 'integer', 'children': [], 'value': '1'},{'id': '173', 'type': 'colon', 'children': []},{'id': '174', 'type': 'while_statement', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'denom'},{'id': '176', 'type': 'block', 'children': ['177']},{'id': '177', 'type': 'try_statement', 'children': ['178', '216']},{'id': '178', 'type': 'block', 'children': ['179', '193', '207']},{'id': '179', 'type': 'expression_statement', 'children': ['180']},{'id': '180', 'type': 'assignment', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'num_value'},{'id': '182', 'type': 'call', 'children': ['183', '186']},{'id': '183', 'type': 'attribute', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'parse'},{'id': '186', 'type': 'argument_list', 'children': ['187']},{'id': '187', 'type': 'call', 'children': ['188', '191']},{'id': '188', 'type': 'attribute', 'children': ['189', '190']},{'id': '189', 'type': 'string', 'children': [], 'value': "' '"},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '191', 'type': 'argument_list', 'children': ['192']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'num'},{'id': '193', 'type': 'expression_statement', 'children': ['194']},{'id': '194', 'type': 'assignment', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'denom_value'},{'id': '196', 'type': 'call', 'children': ['197', '200']},{'id': '197', 'type': 'attribute', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'parse'},{'id': '200', 'type': 'argument_list', 'children': ['201']},{'id': '201', 'type': 'call', 'children': ['202', '205']},{'id': '202', 'type': 'attribute', 'children': ['203', '204']},{'id': '203', 'type': 'string', 'children': [], 'value': "' '"},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '205', 'type': 'argument_list', 'children': ['206']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'denom'},{'id': '207', 'type': 'return_statement', 'children': ['208']},{'id': '208', 'type': 'binary_operator', 'children': ['209', '210'], 'value': '+'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'whole'},{'id': '210', 'type': 'binary_operator', 'children': ['211', '215'], 'value': '/'},{'id': '211', 'type': 'call', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '213', 'type': 'argument_list', 'children': ['214']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'num_value'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'denom_value'},{'id': '216', 'type': 'except_clause', 'children': ['217']},{'id': '217', 'type': 'block', 'children': ['218', '226']},{'id': '218', 'type': 'expression_statement', 'children': ['219']},{'id': '219', 'type': 'augmented_assignment', 'children': ['220', '221'], 'value': '+='},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'num'},{'id': '221', 'type': 'subscript', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'denom'},{'id': '223', 'type': 'slice', 'children': ['224', '225']},{'id': '224', 'type': 'colon', 'children': []},{'id': '225', 'type': 'integer', 'children': [], 'value': '1'},{'id': '226', 'type': 'expression_statement', 'children': ['227']},{'id': '227', 'type': 'assignment', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'denom'},{'id': '229', 'type': 'subscript', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'denom'},{'id': '231', 'type': 'slice', 'children': ['232', '233']},{'id': '232', 'type': 'integer', 'children': [], 'value': '1'},{'id': '233', 'type': 'colon', 'children': []},{'id': '234', 'type': 'return_statement', 'children': ['235']},{'id': '235', 'type': 'None', 'children': []},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'assignment', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '239', 'type': 'call', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'pointFloat'},{'id': '241', 'type': 'argument_list', 'children': ['242']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'words'},{'id': '243', 'type': 'if_statement', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '245', 'type': 'block', 'children': ['246']},{'id': '246', 'type': 'return_statement', 'children': ['247']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '248', 'type': 'expression_statement', 'children': ['249']},{'id': '249', 'type': 'assignment', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '251', 'type': 'call', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'fractionFloat'},{'id': '253', 'type': 'argument_list', 'children': ['254']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'words'},{'id': '255', 'type': 'if_statement', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '257', 'type': 'block', 'children': ['258']},{'id': '258', 'type': 'return_statement', 'children': ['259']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '260', 'type': 'return_statement', 'children': ['261']},{'id': '261', 'type': 'call', 'children': ['262', '265']},{'id': '262', 'type': 'attribute', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'parseInt'},{'id': '265', 'type': 'argument_list', 'children': ['266']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'words'} | def parseFloat(self, words):
def pointFloat(words):
m = re.search(r'(.*) point (.*)', words)
if m:
whole = m.group(1)
frac = m.group(2)
total = 0.0
coeff = 0.10
for digit in frac.split(' '):
total += coeff * self.parse(digit)
coeff /= 10.0
return self.parseInt(whole) + total
return None
def fractionFloat(words):
m = re.search(r'(.*) and (.*)', words)
if m:
whole = self.parseInt(m.group(1))
frac = m.group(2)
frac = re.sub(r'(\w+)s(\b)', '\g<1>\g<2>', frac)
frac = re.sub(r'(\b)a(\b)', '\g<1>one\g<2>', frac)
split = frac.split(' ')
num = split[:1]
denom = split[1:]
while denom:
try:
num_value = self.parse(' '.join(num))
denom_value = self.parse(' '.join(denom))
return whole + float(num_value) / denom_value
except:
num += denom[:1]
denom = denom[1:]
return None
result = pointFloat(words)
if result:
return result
result = fractionFloat(words)
if result:
return result
return self.parseInt(words) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'run'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'stdin'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'marshal_output'},{'id': '11', 'type': 'True', 'children': []},{'id': '12', 'type': 'dictionary_splat_pattern', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '14', 'type': 'block', 'children': ['15', '19', '34', '50', '60', '74', '78', '87', '91', '114', '143', '160', '312', '323']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'records'},{'id': '18', 'type': 'list', 'children': [], 'value': '[]'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '22', 'type': 'list', 'children': ['23', '26', '27', '30', '31'], 'value': '[self._executable, "-u", self._user, "-p", self._port]'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '25', 'type': 'identifier', 'children': [], 'value': '_executable'},{'id': '26', 'type': 'string', 'children': [], 'value': '"-u"'},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '29', 'type': 'identifier', 'children': [], 'value': '_user'},{'id': '30', 'type': 'string', 'children': [], 'value': '"-p"'},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '33', 'type': 'identifier', 'children': [], 'value': '_port'},{'id': '34', 'type': 'if_statement', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '37', 'type': 'identifier', 'children': [], 'value': '_client'},{'id': '38', 'type': 'block', 'children': ['39']},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'augmented_assignment', 'children': ['41', '42'], 'value': '+='},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '42', 'type': 'list', 'children': ['43', '44'], 'value': '["-c", str(self._client)]'},{'id': '43', 'type': 'string', 'children': [], 'value': '"-c"'},{'id': '44', 'type': 'call', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '49', 'type': 'identifier', 'children': [], 'value': '_client'},{'id': '50', 'type': 'if_statement', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'marshal_output'},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'string', 'children': [], 'value': "'-G'"},{'id': '60', 'type': 'if_statement', 'children': ['61', '68']},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '63', 'type': 'argument_list', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'string_types'},{'id': '68', 'type': 'block', 'children': ['69']},{'id': '69', 'type': 'raise_statement', 'children': ['70']},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'string', 'children': [], 'value': "'String commands are not supported, please use a list'"},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'augmented_assignment', 'children': ['76', '77'], 'value': '+='},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'cmd'},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'assignment', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'command'},{'id': '81', 'type': 'call', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'string', 'children': [], 'value': "' '"},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'startupinfo'},{'id': '90', 'type': 'None', 'children': []},{'id': '91', 'type': 'if_statement', 'children': ['92', '97']},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '96'], 'value': '=='},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '96', 'type': 'string', 'children': [], 'value': "'nt'"},{'id': '97', 'type': 'block', 'children': ['98', '106']},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'startupinfo'},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'STARTUPINFO'},{'id': '105', 'type': 'argument_list', 'children': []},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'augmented_assignment', 'children': ['108', '111'], 'value': '|='},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'startupinfo'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'dwFlags'},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'STARTF_USESHOWWINDOW'},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'assignment', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'proc'},{'id': '117', 'type': 'call', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'Popen'},{'id': '121', 'type': 'argument_list', 'children': ['122', '123', '128', '133', '138', '141']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '123', 'type': 'keyword_argument', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'stdin'},{'id': '125', 'type': 'attribute', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'PIPE'},{'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '130', 'type': 'attribute', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'PIPE'},{'id': '133', 'type': 'keyword_argument', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '135', 'type': 'attribute', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'PIPE'},{'id': '138', 'type': 'keyword_argument', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'startupinfo'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'startupinfo'},{'id': '141', 'type': 'dictionary_splat', 'children': ['142']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '143', 'type': 'if_statement', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'stdin'},{'id': '145', 'type': 'block', 'children': ['146']},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'call', 'children': ['148', '153']},{'id': '148', 'type': 'attribute', 'children': ['149', '152']},{'id': '149', 'type': 'attribute', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'proc'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'stdin'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '158', 'type': 'argument_list', 'children': ['159']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'stdin'},{'id': '160', 'type': 'if_statement', 'children': ['161', '162', '300']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'marshal_output'},{'id': '162', 'type': 'block', 'children': ['163', '290']},{'id': '163', 'type': 'try_statement', 'children': ['164', '286']},{'id': '164', 'type': 'block', 'children': ['165']},{'id': '165', 'type': 'while_statement', 'children': ['166', '167']},{'id': '166', 'type': 'True', 'children': []},{'id': '167', 'type': 'block', 'children': ['168', '179', '225']},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'assignment', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'record'},{'id': '171', 'type': 'call', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'marshal'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'load'},{'id': '175', 'type': 'argument_list', 'children': ['176']},{'id': '176', 'type': 'attribute', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'proc'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '179', 'type': 'if_statement', 'children': ['180', '197']},{'id': '180', 'type': 'boolean_operator', 'children': ['181', '190'], 'value': 'and'},{'id': '181', 'type': 'comparison_operator', 'children': ['182', '189'], 'value': '=='},{'id': '182', 'type': 'call', 'children': ['183', '186']},{'id': '183', 'type': 'attribute', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'record'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '186', 'type': 'argument_list', 'children': ['187', '188']},{'id': '187', 'type': 'string', 'children': [], 'value': "b'code'"},{'id': '188', 'type': 'string', 'children': [], 'value': "''"},{'id': '189', 'type': 'string', 'children': [], 'value': "b'error'"},{'id': '190', 'type': 'comparison_operator', 'children': ['191', '194'], 'value': '>='},{'id': '191', 'type': 'subscript', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'record'},{'id': '193', 'type': 'string', 'children': [], 'value': "b'severity'"},{'id': '194', 'type': 'attribute', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '196', 'type': 'identifier', 'children': [], 'value': '_level'},{'id': '197', 'type': 'block', 'children': ['198', '206', '214']},{'id': '198', 'type': 'expression_statement', 'children': ['199']},{'id': '199', 'type': 'call', 'children': ['200', '205']},{'id': '200', 'type': 'attribute', 'children': ['201', '204']},{'id': '201', 'type': 'attribute', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'proc'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'stdin'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '205', 'type': 'argument_list', 'children': []},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'call', 'children': ['208', '213']},{'id': '208', 'type': 'attribute', 'children': ['209', '212']},{'id': '209', 'type': 'attribute', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'proc'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '213', 'type': 'argument_list', 'children': []},{'id': '214', 'type': 'raise_statement', 'children': ['215']},{'id': '215', 'type': 'call', 'children': ['216', '219']},{'id': '216', 'type': 'attribute', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'CommandError'},{'id': '219', 'type': 'argument_list', 'children': ['220', '223', '224']},{'id': '220', 'type': 'subscript', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'record'},{'id': '222', 'type': 'string', 'children': [], 'value': "b'data'"},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'record'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'command'},{'id': '225', 'type': 'if_statement', 'children': ['226', '231']},{'id': '226', 'type': 'call', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '228', 'type': 'argument_list', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'record'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '231', 'type': 'block', 'children': ['232']},{'id': '232', 'type': 'if_statement', 'children': ['233', '236', '244']},{'id': '233', 'type': 'attribute', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'PY2'},{'id': '236', 'type': 'block', 'children': ['237']},{'id': '237', 'type': 'expression_statement', 'children': ['238']},{'id': '238', 'type': 'call', 'children': ['239', '242']},{'id': '239', 'type': 'attribute', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'records'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '242', 'type': 'argument_list', 'children': ['243']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'record'},{'id': '244', 'type': 'else_clause', 'children': ['245']},{'id': '245', 'type': 'block', 'children': ['246']},{'id': '246', 'type': 'expression_statement', 'children': ['247']},{'id': '247', 'type': 'call', 'children': ['248', '251']},{'id': '248', 'type': 'attribute', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'records'},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '251', 'type': 'argument_list', 'children': ['252']},{'id': '252', 'type': 'dictionary_comprehension', 'children': ['253', '277']},{'id': '253', 'type': 'pair', 'children': ['254', '259']},{'id': '254', 'type': 'call', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '256', 'type': 'argument_list', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '258', 'type': 'string', 'children': [], 'value': "'utf8'"},{'id': '259', 'type': 'conditional_expression', 'children': ['260', '264', '269'], 'value': 'if'},{'id': '260', 'type': 'call', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '262', 'type': 'argument_list', 'children': ['263']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '264', 'type': 'call', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '266', 'type': 'argument_list', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '269', 'type': 'call', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '271', 'type': 'argument_list', 'children': ['272', '273', '274']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '273', 'type': 'string', 'children': [], 'value': "'utf8'"},{'id': '274', 'type': 'keyword_argument', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '276', 'type': 'string', 'children': [], 'value': "'ignore'"},{'id': '277', 'type': 'for_in_clause', 'children': ['278', '281']},{'id': '278', 'type': 'pattern_list', 'children': ['279', '280']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '281', 'type': 'call', 'children': ['282', '285']},{'id': '282', 'type': 'attribute', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'record'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '285', 'type': 'argument_list', 'children': []},{'id': '286', 'type': 'except_clause', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'EOFError'},{'id': '288', 'type': 'block', 'children': ['289']},{'id': '289', 'type': 'pass_statement', 'children': []},{'id': '290', 'type': 'expression_statement', 'children': ['291']},{'id': '291', 'type': 'assignment', 'children': ['292', '295']},{'id': '292', 'type': 'pattern_list', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '295', 'type': 'call', 'children': ['296', '299']},{'id': '296', 'type': 'attribute', 'children': ['297', '298']},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'proc'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'communicate'},{'id': '299', 'type': 'argument_list', 'children': []},{'id': '300', 'type': 'else_clause', 'children': ['301']},{'id': '301', 'type': 'block', 'children': ['302']},{'id': '302', 'type': 'expression_statement', 'children': ['303']},{'id': '303', 'type': 'assignment', 'children': ['304', '307']},{'id': '304', 'type': 'pattern_list', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'records'},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '307', 'type': 'call', 'children': ['308', '311']},{'id': '308', 'type': 'attribute', 'children': ['309', '310']},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'proc'},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'communicate'},{'id': '311', 'type': 'argument_list', 'children': []},{'id': '312', 'type': 'if_statement', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '314', 'type': 'block', 'children': ['315']},{'id': '315', 'type': 'raise_statement', 'children': ['316']},{'id': '316', 'type': 'call', 'children': ['317', '320']},{'id': '317', 'type': 'attribute', 'children': ['318', '319']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'CommandError'},{'id': '320', 'type': 'argument_list', 'children': ['321', '322']},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'command'},{'id': '323', 'type': 'return_statement', 'children': ['324']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'records'} | def run(self, cmd, stdin=None, marshal_output=True, **kwargs):
records = []
args = [self._executable, "-u", self._user, "-p", self._port]
if self._client:
args += ["-c", str(self._client)]
if marshal_output:
args.append('-G')
if isinstance(cmd, six.string_types):
raise ValueError('String commands are not supported, please use a list')
args += cmd
command = ' '.join(args)
startupinfo = None
if os.name == 'nt':
startupinfo = subprocess.STARTUPINFO()
startupinfo.dwFlags |= subprocess.STARTF_USESHOWWINDOW
proc = subprocess.Popen(
args,
stdin=subprocess.PIPE,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
startupinfo=startupinfo,
**kwargs
)
if stdin:
proc.stdin.write(six.b(stdin))
if marshal_output:
try:
while True:
record = marshal.load(proc.stdout)
if record.get(b'code', '') == b'error' and record[b'severity'] >= self._level:
proc.stdin.close()
proc.stdout.close()
raise errors.CommandError(record[b'data'], record, command)
if isinstance(record, dict):
if six.PY2:
records.append(record)
else:
records.append({str(k, 'utf8'): str(v) if isinstance(v, int) else str(v, 'utf8', errors='ignore') for k, v in record.items()})
except EOFError:
pass
stdout, stderr = proc.communicate()
else:
records, stderr = proc.communicate()
if stderr:
raise errors.CommandError(stderr, command)
return records |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'canonical_ops'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'ops'},{'id': '5', 'type': 'block', 'children': ['6', '8', '30']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'string', 'children': [], 'value': "''' Returns the given operations array sorted with duplicates removed.\n @param ops checker.Ops\n @return: checker.Ops\n '''"},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'new_ops'},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '13', 'type': 'argument_list', 'children': ['14', '18']},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '16', 'type': 'argument_list', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'ops'},{'id': '18', 'type': 'keyword_argument', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '20', 'type': 'lambda', 'children': ['21', '23']},{'id': '21', 'type': 'lambda_parameters', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '23', 'type': 'tuple', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'entity'},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '30', 'type': 'return_statement', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'new_ops'} | def canonical_ops(ops):
''' Returns the given operations array sorted with duplicates removed.
@param ops checker.Ops
@return: checker.Ops
'''
new_ops = sorted(set(ops), key=lambda x: (x.entity, x.action))
return new_ops |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'extract_from_text'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '11']},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'tools'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'remove_duplicates'},{'id': '11', 'type': 'argument_list', 'children': ['12']},{'id': '12', 'type': 'list_comprehension', 'children': ['13', '28', '36']},{'id': '13', 'type': 'call', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '17', 'type': 'argument_list', 'children': ['18', '19', '20', '23']},{'id': '18', 'type': 'string', 'children': [], 'value': '"arxiv:"'},{'id': '19', 'type': 'string', 'children': [], 'value': '""'},{'id': '20', 'type': 'subscript', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '22', 'type': 'integer', 'children': [], 'value': '0'},{'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'flags'},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'IGNORECASE'},{'id': '28', 'type': 'for_in_clause', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '30', 'type': 'call', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'REGEX'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'findall'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '36', 'type': 'if_clause', 'children': ['37']},{'id': '37', 'type': 'comparison_operator', 'children': ['38', '41'], 'value': '!='},{'id': '38', 'type': 'subscript', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '40', 'type': 'integer', 'children': [], 'value': '0'},{'id': '41', 'type': 'string', 'children': [], 'value': "''"} | def extract_from_text(text):
return tools.remove_duplicates([re.sub("arxiv:", "", i[0],
flags=re.IGNORECASE)
for i in REGEX.findall(text) if i[0] != '']) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'extractTimes'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '6', 'type': 'block', 'children': ['7', '308', '317']},{'id': '7', 'type': 'function_definition', 'children': ['8', '9', '11']},{'id': '8', 'type': 'function_name', 'children': [], 'value': 'handleMatch'},{'id': '9', 'type': 'parameters', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '11', 'type': 'block', 'children': ['12', '16', '264']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'relative'},{'id': '15', 'type': 'False', 'children': []},{'id': '16', 'type': 'if_statement', 'children': ['17', '19', '22', '40', '58', '76', '203']},{'id': '17', 'type': 'not_operator', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '19', 'type': 'block', 'children': ['20']},{'id': '20', 'type': 'return_statement', 'children': ['21']},{'id': '21', 'type': 'None', 'children': []},{'id': '22', 'type': 'elif_clause', 'children': ['23', '31']},{'id': '23', 'type': 'comparison_operator', 'children': ['24', '30'], 'value': '=='},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'integer', 'children': [], 'value': '1'},{'id': '30', 'type': 'string', 'children': [], 'value': "'morning'"},{'id': '31', 'type': 'block', 'children': ['32', '36']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '35', 'type': 'integer', 'children': [], 'value': '8'},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '39', 'type': 'integer', 'children': [], 'value': '0'},{'id': '40', 'type': 'elif_clause', 'children': ['41', '49']},{'id': '41', 'type': 'comparison_operator', 'children': ['42', '48'], 'value': '=='},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'integer', 'children': [], 'value': '1'},{'id': '48', 'type': 'string', 'children': [], 'value': "'afternoon'"},{'id': '49', 'type': 'block', 'children': ['50', '54']},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '53', 'type': 'integer', 'children': [], 'value': '12'},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '57', 'type': 'integer', 'children': [], 'value': '0'},{'id': '58', 'type': 'elif_clause', 'children': ['59', '67']},{'id': '59', 'type': 'comparison_operator', 'children': ['60', '66'], 'value': '=='},{'id': '60', 'type': 'call', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'integer', 'children': [], 'value': '1'},{'id': '66', 'type': 'string', 'children': [], 'value': "'evening'"},{'id': '67', 'type': 'block', 'children': ['68', '72']},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '71', 'type': 'integer', 'children': [], 'value': '19'},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '75', 'type': 'integer', 'children': [], 'value': '0'},{'id': '76', 'type': 'elif_clause', 'children': ['77', '90']},{'id': '77', 'type': 'boolean_operator', 'children': ['78', '84'], 'value': 'and'},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'integer', 'children': [], 'value': '4'},{'id': '84', 'type': 'call', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'integer', 'children': [], 'value': '5'},{'id': '90', 'type': 'block', 'children': ['91', '99', '105', '125', '145', '199']},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '96']},{'id': '93', 'type': 'pattern_list', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '96', 'type': 'expression_list', 'children': ['97', '98']},{'id': '97', 'type': 'integer', 'children': [], 'value': '0'},{'id': '98', 'type': 'integer', 'children': [], 'value': '0'},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'NumberService'},{'id': '104', 'type': 'argument_list', 'children': []},{'id': '105', 'type': 'try_statement', 'children': ['106', '121']},{'id': '106', 'type': 'block', 'children': ['107']},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'assignment', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'diff'},{'id': '110', 'type': 'call', 'children': ['111', '114']},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'parse'},{'id': '114', 'type': 'argument_list', 'children': ['115']},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'integer', 'children': [], 'value': '4'},{'id': '121', 'type': 'except_clause', 'children': ['122']},{'id': '122', 'type': 'block', 'children': ['123']},{'id': '123', 'type': 'return_statement', 'children': ['124']},{'id': '124', 'type': 'None', 'children': []},{'id': '125', 'type': 'if_statement', 'children': ['126', '134', '139']},{'id': '126', 'type': 'comparison_operator', 'children': ['127', '133'], 'value': '=='},{'id': '127', 'type': 'call', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '131', 'type': 'argument_list', 'children': ['132']},{'id': '132', 'type': 'integer', 'children': [], 'value': '5'},{'id': '133', 'type': 'string', 'children': [], 'value': "'hours'"},{'id': '134', 'type': 'block', 'children': ['135']},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'augmented_assignment', 'children': ['137', '138'], 'value': '+='},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'diff'},{'id': '139', 'type': 'else_clause', 'children': ['140']},{'id': '140', 'type': 'block', 'children': ['141']},{'id': '141', 'type': 'expression_statement', 'children': ['142']},{'id': '142', 'type': 'augmented_assignment', 'children': ['143', '144'], 'value': '+='},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'diff'},{'id': '145', 'type': 'if_statement', 'children': ['146', '152']},{'id': '146', 'type': 'call', 'children': ['147', '150']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '150', 'type': 'argument_list', 'children': ['151']},{'id': '151', 'type': 'integer', 'children': [], 'value': '6'},{'id': '152', 'type': 'block', 'children': ['153', '159', '179']},{'id': '153', 'type': 'expression_statement', 'children': ['154']},{'id': '154', 'type': 'assignment', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '156', 'type': 'call', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'NumberService'},{'id': '158', 'type': 'argument_list', 'children': []},{'id': '159', 'type': 'try_statement', 'children': ['160', '175']},{'id': '160', 'type': 'block', 'children': ['161']},{'id': '161', 'type': 'expression_statement', 'children': ['162']},{'id': '162', 'type': 'assignment', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'diff'},{'id': '164', 'type': 'call', 'children': ['165', '168']},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'parse'},{'id': '168', 'type': 'argument_list', 'children': ['169']},{'id': '169', 'type': 'call', 'children': ['170', '173']},{'id': '170', 'type': 'attribute', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'integer', 'children': [], 'value': '7'},{'id': '175', 'type': 'except_clause', 'children': ['176']},{'id': '176', 'type': 'block', 'children': ['177']},{'id': '177', 'type': 'return_statement', 'children': ['178']},{'id': '178', 'type': 'None', 'children': []},{'id': '179', 'type': 'if_statement', 'children': ['180', '188', '193']},{'id': '180', 'type': 'comparison_operator', 'children': ['181', '187'], 'value': '=='},{'id': '181', 'type': 'call', 'children': ['182', '185']},{'id': '182', 'type': 'attribute', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '185', 'type': 'argument_list', 'children': ['186']},{'id': '186', 'type': 'integer', 'children': [], 'value': '8'},{'id': '187', 'type': 'string', 'children': [], 'value': "'hours'"},{'id': '188', 'type': 'block', 'children': ['189']},{'id': '189', 'type': 'expression_statement', 'children': ['190']},{'id': '190', 'type': 'augmented_assignment', 'children': ['191', '192'], 'value': '+='},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'diff'},{'id': '193', 'type': 'else_clause', 'children': ['194']},{'id': '194', 'type': 'block', 'children': ['195']},{'id': '195', 'type': 'expression_statement', 'children': ['196']},{'id': '196', 'type': 'augmented_assignment', 'children': ['197', '198'], 'value': '+='},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'diff'},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'relative'},{'id': '202', 'type': 'True', 'children': []},{'id': '203', 'type': 'else_clause', 'children': ['204']},{'id': '204', 'type': 'block', 'children': ['205', '214', '244']},{'id': '205', 'type': 'expression_statement', 'children': ['206']},{'id': '206', 'type': 'assignment', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '208', 'type': 'call', 'children': ['209', '212']},{'id': '209', 'type': 'attribute', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '212', 'type': 'argument_list', 'children': ['213']},{'id': '213', 'type': 'integer', 'children': [], 'value': '2'},{'id': '214', 'type': 'expression_statement', 'children': ['215']},{'id': '215', 'type': 'assignment', 'children': ['216', '219']},{'id': '216', 'type': 'pattern_list', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '219', 'type': 'expression_list', 'children': ['220', '233']},{'id': '220', 'type': 'binary_operator', 'children': ['221', '232'], 'value': '%'},{'id': '221', 'type': 'call', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '223', 'type': 'argument_list', 'children': ['224']},{'id': '224', 'type': 'subscript', 'children': ['225', '231']},{'id': '225', 'type': 'call', 'children': ['226', '229']},{'id': '226', 'type': 'attribute', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '229', 'type': 'argument_list', 'children': ['230']},{'id': '230', 'type': 'string', 'children': [], 'value': "':'"},{'id': '231', 'type': 'integer', 'children': [], 'value': '0'},{'id': '232', 'type': 'integer', 'children': [], 'value': '12'},{'id': '233', 'type': 'call', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '235', 'type': 'argument_list', 'children': ['236']},{'id': '236', 'type': 'subscript', 'children': ['237', '243']},{'id': '237', 'type': 'call', 'children': ['238', '241']},{'id': '238', 'type': 'attribute', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '241', 'type': 'argument_list', 'children': ['242']},{'id': '242', 'type': 'string', 'children': [], 'value': "':'"},{'id': '243', 'type': 'integer', 'children': [], 'value': '1'},{'id': '244', 'type': 'try_statement', 'children': ['245', '260']},{'id': '245', 'type': 'block', 'children': ['246']},{'id': '246', 'type': 'if_statement', 'children': ['247', '255']},{'id': '247', 'type': 'comparison_operator', 'children': ['248', '254'], 'value': '=='},{'id': '248', 'type': 'call', 'children': ['249', '252']},{'id': '249', 'type': 'attribute', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '252', 'type': 'argument_list', 'children': ['253']},{'id': '253', 'type': 'integer', 'children': [], 'value': '3'},{'id': '254', 'type': 'string', 'children': [], 'value': "'pm'"},{'id': '255', 'type': 'block', 'children': ['256']},{'id': '256', 'type': 'expression_statement', 'children': ['257']},{'id': '257', 'type': 'augmented_assignment', 'children': ['258', '259'], 'value': '+='},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '259', 'type': 'integer', 'children': [], 'value': '12'},{'id': '260', 'type': 'except_clause', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '262', 'type': 'block', 'children': ['263']},{'id': '263', 'type': 'pass_statement', 'children': []},{'id': '264', 'type': 'if_statement', 'children': ['265', '266', '283']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'relative'},{'id': '266', 'type': 'block', 'children': ['267']},{'id': '267', 'type': 'return_statement', 'children': ['268']},{'id': '268', 'type': 'binary_operator', 'children': ['269', '272'], 'value': '+'},{'id': '269', 'type': 'attribute', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '272', 'type': 'call', 'children': ['273', '276']},{'id': '273', 'type': 'attribute', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'timedelta'},{'id': '276', 'type': 'argument_list', 'children': ['277', '280']},{'id': '277', 'type': 'keyword_argument', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'hours'},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '280', 'type': 'keyword_argument', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'minutes'},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '283', 'type': 'else_clause', 'children': ['284']},{'id': '284', 'type': 'block', 'children': ['285']},{'id': '285', 'type': 'return_statement', 'children': ['286']},{'id': '286', 'type': 'call', 'children': ['287', '290']},{'id': '287', 'type': 'attribute', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '290', 'type': 'argument_list', 'children': ['291', '296', '301', '306', '307']},{'id': '291', 'type': 'attribute', 'children': ['292', '295']},{'id': '292', 'type': 'attribute', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'year'},{'id': '296', 'type': 'attribute', 'children': ['297', '300']},{'id': '297', 'type': 'attribute', 'children': ['298', '299']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'month'},{'id': '301', 'type': 'attribute', 'children': ['302', '305']},{'id': '302', 'type': 'attribute', 'children': ['303', '304']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'now'},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'day'},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '308', 'type': 'expression_statement', 'children': ['309']},{'id': '309', 'type': 'assignment', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '311', 'type': 'call', 'children': ['312', '315']},{'id': '312', 'type': 'attribute', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '314', 'type': 'identifier', 'children': [], 'value': '_preprocess'},{'id': '315', 'type': 'argument_list', 'children': ['316']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '317', 'type': 'return_statement', 'children': ['318']},{'id': '318', 'type': 'list_comprehension', 'children': ['319', '323']},{'id': '319', 'type': 'call', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'handleMatch'},{'id': '321', 'type': 'argument_list', 'children': ['322']},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '323', 'type': 'for_in_clause', 'children': ['324', '325']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '325', 'type': 'call', 'children': ['326', '331']},{'id': '326', 'type': 'attribute', 'children': ['327', '330']},{'id': '327', 'type': 'attribute', 'children': ['328', '329']},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '329', 'type': 'identifier', 'children': [], 'value': '_timeRegex'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'finditer'},{'id': '331', 'type': 'argument_list', 'children': ['332']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'inp'} | def extractTimes(self, inp):
def handleMatch(time):
relative = False
if not time:
return None
elif time.group(1) == 'morning':
h = 8
m = 0
elif time.group(1) == 'afternoon':
h = 12
m = 0
elif time.group(1) == 'evening':
h = 19
m = 0
elif time.group(4) and time.group(5):
h, m = 0, 0
converter = NumberService()
try:
diff = converter.parse(time.group(4))
except:
return None
if time.group(5) == 'hours':
h += diff
else:
m += diff
if time.group(6):
converter = NumberService()
try:
diff = converter.parse(time.group(7))
except:
return None
if time.group(8) == 'hours':
h += diff
else:
m += diff
relative = True
else:
t = time.group(2)
h, m = int(t.split(':')[0]) % 12, int(t.split(':')[1])
try:
if time.group(3) == 'pm':
h += 12
except IndexError:
pass
if relative:
return self.now + datetime.timedelta(hours=h, minutes=m)
else:
return datetime.datetime(
self.now.year, self.now.month, self.now.day, h, m
)
inp = self._preprocess(inp)
return [handleMatch(time) for time in self._timeRegex.finditer(inp)] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'serialize_text'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '8', '26', '44', '48', '65']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'string', 'children': [], 'value': "'''Returns a serialized form of the Namepace.\n All the elements in the namespace are sorted by\n URI, joined to the associated prefix with a colon and\n separated with spaces.\n :return: bytes\n '''"},{'id': '8', 'type': 'if_statement', 'children': ['9', '23']},{'id': '9', 'type': 'boolean_operator', 'children': ['10', '15'], 'value': 'or'},{'id': '10', 'type': 'comparison_operator', 'children': ['11', '14'], 'value': 'is'},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '13', 'type': 'identifier', 'children': [], 'value': '_uri_to_prefix'},{'id': '14', 'type': 'None', 'children': []},{'id': '15', 'type': 'comparison_operator', 'children': ['16', '22'], 'value': '=='},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': '_uri_to_prefix'},{'id': '22', 'type': 'integer', 'children': [], 'value': '0'},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'return_statement', 'children': ['25']},{'id': '25', 'type': 'string', 'children': [], 'value': "b''"},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'od'},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'collections'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '43']},{'id': '38', 'type': 'attribute', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '41', 'type': 'identifier', 'children': [], 'value': '_uri_to_prefix'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '43', 'type': 'argument_list', 'children': []},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '47', 'type': 'list', 'children': [], 'value': '[]'},{'id': '48', 'type': 'for_statement', 'children': ['49', '50', '51']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'od'},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'binary_operator', 'children': ['59', '62'], 'value': '+'},{'id': '59', 'type': 'binary_operator', 'children': ['60', '61'], 'value': '+'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '61', 'type': 'string', 'children': [], 'value': "':'"},{'id': '62', 'type': 'subscript', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'od'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '65', 'type': 'return_statement', 'children': ['66']},{'id': '66', 'type': 'call', 'children': ['67', '75']},{'id': '67', 'type': 'attribute', 'children': ['68', '74']},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'string', 'children': [], 'value': "' '"},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'string', 'children': [], 'value': "'utf-8'"} | def serialize_text(self):
'''Returns a serialized form of the Namepace.
All the elements in the namespace are sorted by
URI, joined to the associated prefix with a colon and
separated with spaces.
:return: bytes
'''
if self._uri_to_prefix is None or len(self._uri_to_prefix) == 0:
return b''
od = collections.OrderedDict(sorted(self._uri_to_prefix.items()))
data = []
for uri in od:
data.append(uri + ':' + od[uri])
return ' '.join(data).encode('utf-8') |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'with_zero_or_one'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'block', 'children': ['10', '16', '31', '40', '49', '79', '85', '91']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'cardinality'},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'Cardinality'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'zero_or_one'},{'id': '16', 'type': 'if_statement', 'children': ['17', '19']},{'id': '17', 'type': 'not_operator', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '19', 'type': 'block', 'children': ['20']},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '25', 'type': 'argument_list', 'children': ['26', '27', '28']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '27', 'type': 'string', 'children': [], 'value': '"pattern"'},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'default_pattern'},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'optional_pattern'},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'cardinality'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'make_pattern'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'group_count'},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'cardinality'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'compute_group_count'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '49', 'type': 'function_definition', 'children': ['50', '51', '56']},{'id': '50', 'type': 'function_name', 'children': [], 'value': 'convert_optional'},{'id': '51', 'type': 'parameters', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '53', 'type': 'default_parameter', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '55', 'type': 'None', 'children': []},{'id': '56', 'type': 'block', 'children': ['57', '68', '74']},{'id': '57', 'type': 'if_statement', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '59', 'type': 'block', 'children': ['60']},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '67', 'type': 'argument_list', 'children': []},{'id': '68', 'type': 'if_statement', 'children': ['69', '71']},{'id': '69', 'type': 'not_operator', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '71', 'type': 'block', 'children': ['72']},{'id': '72', 'type': 'return_statement', 'children': ['73']},{'id': '73', 'type': 'None', 'children': []},{'id': '74', 'type': 'return_statement', 'children': ['75']},{'id': '75', 'type': 'call', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'converter'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'convert_optional'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'optional_pattern'},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'convert_optional'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'regex_group_count'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'group_count'},{'id': '91', 'type': 'return_statement', 'children': ['92']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'convert_optional'} | def with_zero_or_one(cls, converter, pattern=None):
cardinality = Cardinality.zero_or_one
if not pattern:
pattern = getattr(converter, "pattern", cls.default_pattern)
optional_pattern = cardinality.make_pattern(pattern)
group_count = cardinality.compute_group_count(pattern)
def convert_optional(text, m=None):
if text:
text = text.strip()
if not text:
return None
return converter(text)
convert_optional.pattern = optional_pattern
convert_optional.regex_group_count = group_count
return convert_optional |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'stats_keyboard'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'events'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '6', 'type': 'block', 'children': ['7', '19', '27', '35', '48', '63', '72', '200', '229', '387']},{'id': '7', 'type': 'if_statement', 'children': ['8', '14']},{'id': '8', 'type': 'comparison_operator', 'children': ['9', '13'], 'value': '<'},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '11', 'type': 'argument_list', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'events'},{'id': '13', 'type': 'integer', 'children': [], 'value': '2'},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'return_statement', 'children': ['16']},{'id': '16', 'type': 'expression_list', 'children': ['17', '18']},{'id': '17', 'type': 'list', 'children': [], 'value': '[]'},{'id': '18', 'type': 'list', 'children': [], 'value': '[]'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '24']},{'id': '21', 'type': 'pattern_list', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'deltas'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'prev_dt'},{'id': '24', 'type': 'expression_list', 'children': ['25', '26']},{'id': '25', 'type': 'list', 'children': [], 'value': '[]'},{'id': '26', 'type': 'None', 'children': []},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '32']},{'id': '29', 'type': 'pattern_list', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'sessions'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '32', 'type': 'expression_list', 'children': ['33', '34']},{'id': '33', 'type': 'list', 'children': [], 'value': '[]'},{'id': '34', 'type': 'None', 'children': []},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'UNBROKEN_DELTA'},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'timedelta'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'seconds'},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'conf'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'KeyboardSessionMaxDelta'},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'blank'},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'collections'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'defaultdict'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'lambda', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'collections'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'defaultdict'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'collated'},{'id': '66', 'type': 'list', 'children': ['67'], 'value': '[blank.copy()]'},{'id': '67', 'type': 'call', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'blank'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '71', 'type': 'argument_list', 'children': []},{'id': '72', 'type': 'for_statement', 'children': ['73', '74', '75']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'events'},{'id': '75', 'type': 'block', 'children': ['76', '170', '181', '194']},{'id': '76', 'type': 'if_statement', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'prev_dt'},{'id': '78', 'type': 'block', 'children': ['79', '122', '130', '137']},{'id': '79', 'type': 'if_statement', 'children': ['80', '110']},{'id': '80', 'type': '()', 'children': ['81']},{'id': '81', 'type': 'boolean_operator', 'children': ['82', '101'], 'value': 'or'},{'id': '82', 'type': 'boolean_operator', 'children': ['83', '92'], 'value': 'or'},{'id': '83', 'type': 'comparison_operator', 'children': ['84', '87'], 'value': '!='},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'prev_dt'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'second'},{'id': '87', 'type': 'attribute', 'children': ['88', '91']},{'id': '88', 'type': 'subscript', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '90', 'type': 'string', 'children': [], 'value': '"dt"'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'second'},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '96'], 'value': '!='},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'prev_dt'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'minute'},{'id': '96', 'type': 'attribute', 'children': ['97', '100']},{'id': '97', 'type': 'subscript', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '99', 'type': 'string', 'children': [], 'value': '"dt"'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'minute'},{'id': '101', 'type': 'comparison_operator', 'children': ['102', '105'], 'value': '!='},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'prev_dt'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'hour'},{'id': '105', 'type': 'attribute', 'children': ['106', '109']},{'id': '106', 'type': 'subscript', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '108', 'type': 'string', 'children': [], 'value': '"dt"'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'hour'},{'id': '110', 'type': 'block', 'children': ['111']},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'call', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'collated'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '116', 'type': 'argument_list', 'children': ['117']},{'id': '117', 'type': 'call', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'blank'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '121', 'type': 'argument_list', 'children': []},{'id': '122', 'type': 'expression_statement', 'children': ['123']},{'id': '123', 'type': 'assignment', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'delta'},{'id': '125', 'type': 'binary_operator', 'children': ['126', '129'], 'value': '-'},{'id': '126', 'type': 'subscript', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '128', 'type': 'string', 'children': [], 'value': '"dt"'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'prev_dt'},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'deltas'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'delta'},{'id': '137', 'type': 'if_statement', 'children': ['138', '141', '146']},{'id': '138', 'type': 'comparison_operator', 'children': ['139', '140'], 'value': '>'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'delta'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'UNBROKEN_DELTA'},{'id': '141', 'type': 'block', 'children': ['142']},{'id': '142', 'type': 'expression_statement', 'children': ['143']},{'id': '143', 'type': 'assignment', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '145', 'type': 'None', 'children': []},{'id': '146', 'type': 'else_clause', 'children': ['147']},{'id': '147', 'type': 'block', 'children': ['148', '163']},{'id': '148', 'type': 'if_statement', 'children': ['149', '151']},{'id': '149', 'type': 'not_operator', 'children': ['150']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '151', 'type': 'block', 'children': ['152', '156']},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'assignment', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '155', 'type': 'list', 'children': [], 'value': '[]'},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'call', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'sessions'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '161', 'type': 'argument_list', 'children': ['162']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'call', 'children': ['165', '168']},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '168', 'type': 'argument_list', 'children': ['169']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'delta'},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '178']},{'id': '172', 'type': 'subscript', 'children': ['173', '177']},{'id': '173', 'type': 'subscript', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'collated'},{'id': '175', 'type': 'unary_operator', 'children': ['176'], 'value': '-'},{'id': '176', 'type': 'integer', 'children': [], 'value': '1'},{'id': '177', 'type': 'string', 'children': [], 'value': '"dt"'},{'id': '178', 'type': 'subscript', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '180', 'type': 'string', 'children': [], 'value': '"dt"'},{'id': '181', 'type': 'expression_statement', 'children': ['182']},{'id': '182', 'type': 'augmented_assignment', 'children': ['183', '193'], 'value': '+='},{'id': '183', 'type': 'subscript', 'children': ['184', '190']},{'id': '184', 'type': 'subscript', 'children': ['185', '189']},{'id': '185', 'type': 'subscript', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'collated'},{'id': '187', 'type': 'unary_operator', 'children': ['188'], 'value': '-'},{'id': '188', 'type': 'integer', 'children': [], 'value': '1'},{'id': '189', 'type': 'string', 'children': [], 'value': '"keys"'},{'id': '190', 'type': 'subscript', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '192', 'type': 'string', 'children': [], 'value': '"realkey"'},{'id': '193', 'type': 'integer', 'children': [], 'value': '1'},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'assignment', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'prev_dt'},{'id': '197', 'type': 'subscript', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '199', 'type': 'string', 'children': [], 'value': '"dt"'},{'id': '200', 'type': 'expression_statement', 'children': ['201']},{'id': '201', 'type': 'assignment', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'longest_session'},{'id': '203', 'type': 'call', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '205', 'type': 'argument_list', 'children': ['206', '215']},{'id': '206', 'type': 'binary_operator', 'children': ['207', '208'], 'value': '+'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'sessions'},{'id': '208', 'type': 'list', 'children': ['209'], 'value': '[[datetime.timedelta()]]'},{'id': '209', 'type': 'list', 'children': ['210'], 'value': '[datetime.timedelta()]'},{'id': '210', 'type': 'call', 'children': ['211', '214']},{'id': '211', 'type': 'attribute', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'timedelta'},{'id': '214', 'type': 'argument_list', 'children': []},{'id': '215', 'type': 'keyword_argument', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '217', 'type': 'lambda', 'children': ['218', '220']},{'id': '218', 'type': 'lambda_parameters', 'children': ['219']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '220', 'type': 'call', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '222', 'type': 'argument_list', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '224', 'type': 'call', 'children': ['225', '228']},{'id': '225', 'type': 'attribute', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'timedelta'},{'id': '228', 'type': 'argument_list', 'children': []},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'assignment', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'stats'},{'id': '232', 'type': 'conditional_expression', 'children': ['233', '250', '253'], 'value': 'if'},{'id': '233', 'type': 'list', 'children': ['234'], 'value': '[\r\n ("Average interval between combos",\r\n sum(deltas, datetime.timedelta()) / len(deltas)),\r\n ]'},{'id': '234', 'type': 'tuple', 'children': ['235', '236']},{'id': '235', 'type': 'string', 'children': [], 'value': '"Average interval between combos"'},{'id': '236', 'type': 'binary_operator', 'children': ['237', '246'], 'value': '/'},{'id': '237', 'type': 'call', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '239', 'type': 'argument_list', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'deltas'},{'id': '241', 'type': 'call', 'children': ['242', '245']},{'id': '242', 'type': 'attribute', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'timedelta'},{'id': '245', 'type': 'argument_list', 'children': []},{'id': '246', 'type': 'call', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '248', 'type': 'argument_list', 'children': ['249']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'deltas'},{'id': '250', 'type': 'comparison_operator', 'children': ['251', '252'], 'value': '=='},{'id': '251', 'type': 'string', 'children': [], 'value': '"combos"'},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '253', 'type': 'list', 'children': ['254', '281', '297', '307', '326', '354', '365', '373'], 'value': '[\r\n ("Keys per hour",\r\n int(3600 * len(events) / timedelta_seconds(events[-1]["dt"] - events[0]["dt"]))),\r\n ("Average interval between keys",\r\n sum(deltas, datetime.timedelta()) / len(deltas)),\r\n ("Typing sessions (key interval < %ss)" % UNBROKEN_DELTA.seconds,\r\n len(sessions)),\r\n ("Average keys in session",\r\n sum(len(x) + 1 for x in sessions) / len(sessions)),\r\n ("Average session duration", sum((sum(x, datetime.timedelta())\r\n for x in sessions), datetime.timedelta()) / len(sessions)),\r\n ("Longest session duration",\r\n sum(longest_session, datetime.timedelta())),\r\n ("Keys in longest session",\r\n len(longest_session) + 1),\r\n ("Most keys in session",\r\n max(len(x) + 1 for x in sessions)),\r\n ]'},{'id': '254', 'type': 'tuple', 'children': ['255', '256']},{'id': '255', 'type': 'string', 'children': [], 'value': '"Keys per hour"'},{'id': '256', 'type': 'call', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '258', 'type': 'argument_list', 'children': ['259']},{'id': '259', 'type': 'binary_operator', 'children': ['260', '266'], 'value': '/'},{'id': '260', 'type': 'binary_operator', 'children': ['261', '262'], 'value': '*'},{'id': '261', 'type': 'integer', 'children': [], 'value': '3600'},{'id': '262', 'type': 'call', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '264', 'type': 'argument_list', 'children': ['265']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'events'},{'id': '266', 'type': 'call', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'timedelta_seconds'},{'id': '268', 'type': 'argument_list', 'children': ['269']},{'id': '269', 'type': 'binary_operator', 'children': ['270', '276'], 'value': '-'},{'id': '270', 'type': 'subscript', 'children': ['271', '275']},{'id': '271', 'type': 'subscript', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'events'},{'id': '273', 'type': 'unary_operator', 'children': ['274'], 'value': '-'},{'id': '274', 'type': 'integer', 'children': [], 'value': '1'},{'id': '275', 'type': 'string', 'children': [], 'value': '"dt"'},{'id': '276', 'type': 'subscript', 'children': ['277', '280']},{'id': '277', 'type': 'subscript', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'events'},{'id': '279', 'type': 'integer', 'children': [], 'value': '0'},{'id': '280', 'type': 'string', 'children': [], 'value': '"dt"'},{'id': '281', 'type': 'tuple', 'children': ['282', '283']},{'id': '282', 'type': 'string', 'children': [], 'value': '"Average interval between keys"'},{'id': '283', 'type': 'binary_operator', 'children': ['284', '293'], 'value': '/'},{'id': '284', 'type': 'call', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '286', 'type': 'argument_list', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'deltas'},{'id': '288', 'type': 'call', 'children': ['289', '292']},{'id': '289', 'type': 'attribute', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'timedelta'},{'id': '292', 'type': 'argument_list', 'children': []},{'id': '293', 'type': 'call', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '295', 'type': 'argument_list', 'children': ['296']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'deltas'},{'id': '297', 'type': 'tuple', 'children': ['298', '303']},{'id': '298', 'type': 'binary_operator', 'children': ['299', '300'], 'value': '%'},{'id': '299', 'type': 'string', 'children': [], 'value': '"Typing sessions (key interval < %ss)"'},{'id': '300', 'type': 'attribute', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'UNBROKEN_DELTA'},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'seconds'},{'id': '303', 'type': 'call', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '305', 'type': 'argument_list', 'children': ['306']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'sessions'},{'id': '307', 'type': 'tuple', 'children': ['308', '309']},{'id': '308', 'type': 'string', 'children': [], 'value': '"Average keys in session"'},{'id': '309', 'type': 'binary_operator', 'children': ['310', '322'], 'value': '/'},{'id': '310', 'type': 'call', 'children': ['311', '312']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '312', 'type': 'generator_expression', 'children': ['313', '319']},{'id': '313', 'type': 'binary_operator', 'children': ['314', '318'], 'value': '+'},{'id': '314', 'type': 'call', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '316', 'type': 'argument_list', 'children': ['317']},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '318', 'type': 'integer', 'children': [], 'value': '1'},{'id': '319', 'type': 'for_in_clause', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'sessions'},{'id': '322', 'type': 'call', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '324', 'type': 'argument_list', 'children': ['325']},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'sessions'},{'id': '326', 'type': 'tuple', 'children': ['327', '328']},{'id': '327', 'type': 'string', 'children': [], 'value': '"Average session duration"'},{'id': '328', 'type': 'binary_operator', 'children': ['329', '350'], 'value': '/'},{'id': '329', 'type': 'call', 'children': ['330', '331']},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '331', 'type': 'argument_list', 'children': ['332', '345']},{'id': '332', 'type': 'generator_expression', 'children': ['333', '342']},{'id': '333', 'type': 'call', 'children': ['334', '335']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '335', 'type': 'argument_list', 'children': ['336', '337']},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '337', 'type': 'call', 'children': ['338', '341']},{'id': '338', 'type': 'attribute', 'children': ['339', '340']},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '340', 'type': 'identifier', 'children': [], 'value': 'timedelta'},{'id': '341', 'type': 'argument_list', 'children': []},{'id': '342', 'type': 'for_in_clause', 'children': ['343', '344']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '344', 'type': 'identifier', 'children': [], 'value': 'sessions'},{'id': '345', 'type': 'call', 'children': ['346', '349']},{'id': '346', 'type': 'attribute', 'children': ['347', '348']},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '348', 'type': 'identifier', 'children': [], 'value': 'timedelta'},{'id': '349', 'type': 'argument_list', 'children': []},{'id': '350', 'type': 'call', 'children': ['351', '352']},{'id': '351', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '352', 'type': 'argument_list', 'children': ['353']},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'sessions'},{'id': '354', 'type': 'tuple', 'children': ['355', '356']},{'id': '355', 'type': 'string', 'children': [], 'value': '"Longest session duration"'},{'id': '356', 'type': 'call', 'children': ['357', '358']},{'id': '357', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '358', 'type': 'argument_list', 'children': ['359', '360']},{'id': '359', 'type': 'identifier', 'children': [], 'value': 'longest_session'},{'id': '360', 'type': 'call', 'children': ['361', '364']},{'id': '361', 'type': 'attribute', 'children': ['362', '363']},{'id': '362', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '363', 'type': 'identifier', 'children': [], 'value': 'timedelta'},{'id': '364', 'type': 'argument_list', 'children': []},{'id': '365', 'type': 'tuple', 'children': ['366', '367']},{'id': '366', 'type': 'string', 'children': [], 'value': '"Keys in longest session"'},{'id': '367', 'type': 'binary_operator', 'children': ['368', '372'], 'value': '+'},{'id': '368', 'type': 'call', 'children': ['369', '370']},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '370', 'type': 'argument_list', 'children': ['371']},{'id': '371', 'type': 'identifier', 'children': [], 'value': 'longest_session'},{'id': '372', 'type': 'integer', 'children': [], 'value': '1'},{'id': '373', 'type': 'tuple', 'children': ['374', '375']},{'id': '374', 'type': 'string', 'children': [], 'value': '"Most keys in session"'},{'id': '375', 'type': 'call', 'children': ['376', '377']},{'id': '376', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '377', 'type': 'generator_expression', 'children': ['378', '384']},{'id': '378', 'type': 'binary_operator', 'children': ['379', '383'], 'value': '+'},{'id': '379', 'type': 'call', 'children': ['380', '381']},{'id': '380', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '381', 'type': 'argument_list', 'children': ['382']},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '383', 'type': 'integer', 'children': [], 'value': '1'},{'id': '384', 'type': 'for_in_clause', 'children': ['385', '386']},{'id': '385', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '386', 'type': 'identifier', 'children': [], 'value': 'sessions'},{'id': '387', 'type': 'return_statement', 'children': ['388']},{'id': '388', 'type': 'expression_list', 'children': ['389', '390']},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'stats'},{'id': '390', 'type': 'identifier', 'children': [], 'value': 'collated'} | def stats_keyboard(events, table):
if len(events) < 2: return [], []
deltas, prev_dt = [], None
sessions, session = [], None
UNBROKEN_DELTA = datetime.timedelta(seconds=conf.KeyboardSessionMaxDelta)
blank = collections.defaultdict(lambda: collections.defaultdict(int))
collated = [blank.copy()]
for e in events:
if prev_dt:
if (prev_dt.second != e["dt"].second
or prev_dt.minute != e["dt"].minute or prev_dt.hour != e["dt"].hour):
collated.append(blank.copy())
delta = e["dt"] - prev_dt
deltas.append(delta)
if delta > UNBROKEN_DELTA:
session = None
else:
if not session:
session = []
sessions.append(session)
session.append(delta)
collated[-1]["dt"] = e["dt"]
collated[-1]["keys"][e["realkey"]] += 1
prev_dt = e["dt"]
longest_session = max(sessions + [[datetime.timedelta()]], key=lambda x: sum(x, datetime.timedelta()))
stats = [
("Average interval between combos",
sum(deltas, datetime.timedelta()) / len(deltas)),
] if "combos" == table else [
("Keys per hour",
int(3600 * len(events) / timedelta_seconds(events[-1]["dt"] - events[0]["dt"]))),
("Average interval between keys",
sum(deltas, datetime.timedelta()) / len(deltas)),
("Typing sessions (key interval < %ss)" % UNBROKEN_DELTA.seconds,
len(sessions)),
("Average keys in session",
sum(len(x) + 1 for x in sessions) / len(sessions)),
("Average session duration", sum((sum(x, datetime.timedelta())
for x in sessions), datetime.timedelta()) / len(sessions)),
("Longest session duration",
sum(longest_session, datetime.timedelta())),
("Keys in longest session",
len(longest_session) + 1),
("Most keys in session",
max(len(x) + 1 for x in sessions)),
]
return stats, collated |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_perseus'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'path_or_file'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'main_columns'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'separator'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'separator'},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'convert_bool_to_category'},{'id': '14', 'type': 'True', 'children': []},{'id': '15', 'type': 'default_parameter', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'numerical_annotation_rows'},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'list', 'children': [], 'value': '[]'},{'id': '21', 'type': 'block', 'children': ['22', '30', '46', '57', '61', '73', '100', '181', '234', '248', '280']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '29', 'type': 'argument_list', 'children': []},{'id': '30', 'type': 'if_statement', 'children': ['31', '37']},{'id': '31', 'type': 'not_operator', 'children': ['32']},{'id': '32', 'type': 'attribute', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '37', 'type': 'block', 'children': ['38']},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '45']},{'id': '40', 'type': 'attribute', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '45', 'type': 'string', 'children': [], 'value': "'Column Name'"},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'column_names'},{'id': '49', 'type': 'call', 'children': ['50', '55']},{'id': '50', 'type': 'attribute', 'children': ['51', '54']},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'get_level_values'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'string', 'children': [], 'value': "'Column Name'"},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '60', 'type': 'dictionary', 'children': []},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'main_columns'},{'id': '64', 'type': 'conditional_expression', 'children': ['65', '69', '72'], 'value': 'if'},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': '_infer_main_columns'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '69', 'type': 'comparison_operator', 'children': ['70', '71'], 'value': 'is'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'main_columns'},{'id': '71', 'type': 'None', 'children': []},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'main_columns'},{'id': '73', 'type': 'expression_statement', 'children': ['74']},{'id': '74', 'type': 'assignment', 'children': ['75', '78']},{'id': '75', 'type': 'subscript', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '77', 'type': 'string', 'children': [], 'value': "'Type'"},{'id': '78', 'type': 'list_comprehension', 'children': ['79', '90']},{'id': '79', 'type': 'conditional_expression', 'children': ['80', '81', '86'], 'value': 'if'},{'id': '80', 'type': 'string', 'children': [], 'value': "'E'"},{'id': '81', 'type': 'comparison_operator', 'children': ['82', '85'], 'value': 'in'},{'id': '82', 'type': 'subscript', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'column_names'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'main_columns'},{'id': '86', 'type': 'call', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'dtype_to_perseus'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '90', 'type': 'for_in_clause', 'children': ['91', '94']},{'id': '91', 'type': 'pattern_list', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '94', 'type': 'call', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '96', 'type': 'argument_list', 'children': ['97']},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'dtypes'},{'id': '100', 'type': 'for_statement', 'children': ['101', '104', '110']},{'id': '101', 'type': 'pattern_list', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '106', 'type': 'argument_list', 'children': ['107']},{'id': '107', 'type': 'attribute', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '110', 'type': 'block', 'children': ['111', '125']},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'assignment', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'valid_values'},{'id': '114', 'type': 'list_comprehension', 'children': ['115', '116', '121']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '116', 'type': 'for_in_clause', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '118', 'type': 'subscript', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '121', 'type': 'if_clause', 'children': ['122']},{'id': '122', 'type': 'comparison_operator', 'children': ['123', '124'], 'value': 'is'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '124', 'type': 'None', 'children': []},{'id': '125', 'type': 'if_statement', 'children': ['126', '145']},{'id': '126', 'type': 'boolean_operator', 'children': ['127', '133'], 'value': 'and'},{'id': '127', 'type': 'comparison_operator', 'children': ['128', '132'], 'value': '>'},{'id': '128', 'type': 'call', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'valid_values'},{'id': '132', 'type': 'integer', 'children': [], 'value': '0'},{'id': '133', 'type': 'call', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '135', 'type': 'generator_expression', 'children': ['136', '142']},{'id': '136', 'type': 'comparison_operator', 'children': ['137', '141'], 'value': 'is'},{'id': '137', 'type': 'call', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '139', 'type': 'argument_list', 'children': ['140']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '142', 'type': 'for_in_clause', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'valid_values'},{'id': '145', 'type': 'block', 'children': ['146', '154']},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'assignment', 'children': ['148', '153']},{'id': '148', 'type': 'subscript', 'children': ['149', '152']},{'id': '149', 'type': 'subscript', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '151', 'type': 'string', 'children': [], 'value': "'Type'"},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '153', 'type': 'string', 'children': [], 'value': "'M'"},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'assignment', 'children': ['156', '159']},{'id': '156', 'type': 'subscript', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '159', 'type': 'call', 'children': ['160', '165']},{'id': '160', 'type': 'attribute', 'children': ['161', '164']},{'id': '161', 'type': 'subscript', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'apply'},{'id': '165', 'type': 'argument_list', 'children': ['166']},{'id': '166', 'type': 'lambda', 'children': ['167', '169']},{'id': '167', 'type': 'lambda_parameters', 'children': ['168']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'xs'},{'id': '169', 'type': 'call', 'children': ['170', '173']},{'id': '170', 'type': 'attribute', 'children': ['171', '172']},{'id': '171', 'type': 'string', 'children': [], 'value': "';'"},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '173', 'type': 'generator_expression', 'children': ['174', '178']},{'id': '174', 'type': 'call', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '176', 'type': 'argument_list', 'children': ['177']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '178', 'type': 'for_in_clause', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'xs'},{'id': '181', 'type': 'if_statement', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'convert_bool_to_category'},{'id': '183', 'type': 'block', 'children': ['184']},{'id': '184', 'type': 'for_statement', 'children': ['185', '188', '194']},{'id': '185', 'type': 'pattern_list', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '188', 'type': 'call', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '190', 'type': 'argument_list', 'children': ['191']},{'id': '191', 'type': 'attribute', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '194', 'type': 'block', 'children': ['195']},{'id': '195', 'type': 'if_statement', 'children': ['196', '208']},{'id': '196', 'type': 'comparison_operator', 'children': ['197', '202'], 'value': 'is'},{'id': '197', 'type': 'subscript', 'children': ['198', '201']},{'id': '198', 'type': 'attribute', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'dtypes'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '202', 'type': 'call', 'children': ['203', '206']},{'id': '203', 'type': 'attribute', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '206', 'type': 'argument_list', 'children': ['207']},{'id': '207', 'type': 'string', 'children': [], 'value': "'bool'"},{'id': '208', 'type': 'block', 'children': ['209', '217', '225']},{'id': '209', 'type': 'expression_statement', 'children': ['210']},{'id': '210', 'type': 'assignment', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '212', 'type': 'attribute', 'children': ['213', '216']},{'id': '213', 'type': 'subscript', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'assignment', 'children': ['219', '224']},{'id': '219', 'type': 'subscript', 'children': ['220', '223']},{'id': '220', 'type': 'subscript', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '224', 'type': 'string', 'children': [], 'value': "'+'"},{'id': '225', 'type': 'expression_statement', 'children': ['226']},{'id': '226', 'type': 'assignment', 'children': ['227', '233']},{'id': '227', 'type': 'subscript', 'children': ['228', '231']},{'id': '228', 'type': 'subscript', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '231', 'type': 'unary_operator', 'children': ['232'], 'value': '~'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '233', 'type': 'string', 'children': [], 'value': "''"},{'id': '234', 'type': 'expression_statement', 'children': ['235']},{'id': '235', 'type': 'assignment', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'annotation_row_names'},{'id': '237', 'type': 'binary_operator', 'children': ['238', '246'], 'value': '-'},{'id': '238', 'type': 'call', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '240', 'type': 'argument_list', 'children': ['241']},{'id': '241', 'type': 'attribute', 'children': ['242', '245']},{'id': '242', 'type': 'attribute', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '246', 'type': 'set', 'children': ['247']},{'id': '247', 'type': 'string', 'children': [], 'value': "'Column Name'"},{'id': '248', 'type': 'for_statement', 'children': ['249', '250', '251']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'annotation_row_names'},{'id': '251', 'type': 'block', 'children': ['252', '261']},{'id': '252', 'type': 'expression_statement', 'children': ['253']},{'id': '253', 'type': 'assignment', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'annotation_type'},{'id': '255', 'type': 'conditional_expression', 'children': ['256', '257', '260'], 'value': 'if'},{'id': '256', 'type': 'string', 'children': [], 'value': "'N'"},{'id': '257', 'type': 'comparison_operator', 'children': ['258', '259'], 'value': 'in'},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'numerical_annotation_rows'},{'id': '260', 'type': 'string', 'children': [], 'value': "'C'"},{'id': '261', 'type': 'expression_statement', 'children': ['262']},{'id': '262', 'type': 'assignment', 'children': ['263', '272']},{'id': '263', 'type': 'subscript', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '265', 'type': 'call', 'children': ['266', '269']},{'id': '266', 'type': 'attribute', 'children': ['267', '268']},{'id': '267', 'type': 'string', 'children': [], 'value': "'{}:{}'"},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '269', 'type': 'argument_list', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'annotation_type'},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '272', 'type': 'call', 'children': ['273', '278']},{'id': '273', 'type': 'attribute', 'children': ['274', '277']},{'id': '274', 'type': 'attribute', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'get_level_values'},{'id': '278', 'type': 'argument_list', 'children': ['279']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '280', 'type': 'with_statement', 'children': ['281', '291']},{'id': '281', 'type': 'with_clause', 'children': ['282']},{'id': '282', 'type': 'with_item', 'children': ['283']},{'id': '283', 'type': 'as_pattern', 'children': ['284', '289']},{'id': '284', 'type': 'call', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'PathOrFile'},{'id': '286', 'type': 'argument_list', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'path_or_file'},{'id': '288', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '289', 'type': 'as_pattern_target', 'children': ['290']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '291', 'type': 'block', 'children': ['292', '306', '320']},{'id': '292', 'type': 'expression_statement', 'children': ['293']},{'id': '293', 'type': 'call', 'children': ['294', '297']},{'id': '294', 'type': 'attribute', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '297', 'type': 'argument_list', 'children': ['298']},{'id': '298', 'type': 'binary_operator', 'children': ['299', '305'], 'value': '+'},{'id': '299', 'type': 'call', 'children': ['300', '303']},{'id': '300', 'type': 'attribute', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'separator'},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '303', 'type': 'argument_list', 'children': ['304']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'column_names'},{'id': '305', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '306', 'type': 'for_statement', 'children': ['307', '310', '315', '319']},{'id': '307', 'type': 'pattern_list', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '310', 'type': 'call', 'children': ['311', '314']},{'id': '311', 'type': 'attribute', 'children': ['312', '313']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '314', 'type': 'argument_list', 'children': []},{'id': '315', 'type': 'ERROR', 'children': ['316']},{'id': '316', 'type': 'attribute', 'children': ['317', '318']},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '319', 'type': 'block', 'children': [], 'value': ''},{'id': '320', 'type': 'expression_statement', 'children': ['321']},{'id': '321', 'type': 'call', 'children': ['322', '325']},{'id': '322', 'type': 'attribute', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': '_df'},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'to_csv'},{'id': '325', 'type': 'argument_list', 'children': ['326', '327', '330', '333']},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '327', 'type': 'keyword_argument', 'children': ['328', '329']},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '329', 'type': 'None', 'children': []},{'id': '330', 'type': 'keyword_argument', 'children': ['331', '332']},{'id': '331', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '332', 'type': 'False', 'children': []},{'id': '333', 'type': 'keyword_argument', 'children': ['334', '335']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'separator'} | def to_perseus(df, path_or_file, main_columns=None,
separator=separator,
convert_bool_to_category=True,
numerical_annotation_rows = set([])):
_df = df.copy()
if not _df.columns.name:
_df.columns.name = 'Column Name'
column_names = _df.columns.get_level_values('Column Name')
annotations = {}
main_columns = _infer_main_columns(_df) if main_columns is None else main_columns
annotations['Type'] = ['E' if column_names[i] in main_columns else dtype_to_perseus(dtype)
for i, dtype in enumerate(_df.dtypes)]
for i, column in enumerate(_df.columns):
valid_values = [value for value in _df[column] if value is not None]
if len(valid_values) > 0 and all(type(value) is list for value in valid_values):
annotations['Type'][i] = 'M'
_df[column] = _df[column].apply(lambda xs: ';'.join(str(x) for x in xs))
if convert_bool_to_category:
for i, column in enumerate(_df.columns):
if _df.dtypes[i] is np.dtype('bool'):
values = _df[column].values
_df[column][values] = '+'
_df[column][~values] = ''
annotation_row_names = set(_df.columns.names) - {'Column Name'}
for name in annotation_row_names:
annotation_type = 'N' if name in numerical_annotation_rows else 'C'
annotations['{}:{}'.format(annotation_type, name)] = _df.columns.get_level_values(name)
with PathOrFile(path_or_file, 'w') as f:
f.write(separator.join(column_names) + '\n')
for name, values in annotations.items():
f.write('
_df.to_csv(f, header=None, index=False, sep=separator) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'do_your_job'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '16', '65', '71', '80', '153']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '11']},{'id': '8', 'type': 'pattern_list', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '11', 'type': 'call', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'get_intended_direction'},{'id': '15', 'type': 'argument_list', 'children': []},{'id': '16', 'type': 'if_statement', 'children': ['17', '32']},{'id': '17', 'type': 'boolean_operator', 'children': ['18', '25'], 'value': 'and'},{'id': '18', 'type': 'comparison_operator', 'children': ['19', '22'], 'value': '=='},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'target_x'},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'current_x'},{'id': '25', 'type': 'comparison_operator', 'children': ['26', '29'], 'value': '=='},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'target_y'},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'current_y'},{'id': '32', 'type': 'block', 'children': ['33', '64']},{'id': '33', 'type': 'if_statement', 'children': ['34', '42']},{'id': '34', 'type': 'comparison_operator', 'children': ['35', '41'], 'value': '=='},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '41', 'type': 'integer', 'children': [], 'value': '0'},{'id': '42', 'type': 'block', 'children': ['43', '52']},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '50']},{'id': '45', 'type': 'attribute', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'string', 'children': [], 'value': '"TARGET ACQUIRED"'},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'lg_mv'},{'id': '57', 'type': 'argument_list', 'children': ['58', '59']},{'id': '58', 'type': 'integer', 'children': [], 'value': '2'},{'id': '59', 'type': 'binary_operator', 'children': ['60', '63'], 'value': '+'},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '63', 'type': 'string', 'children': [], 'value': '": TARGET ACQUIRED"'},{'id': '64', 'type': 'return_statement', 'children': []},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'augmented_assignment', 'children': ['67', '70'], 'value': '+='},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'num_steps'},{'id': '70', 'type': 'integer', 'children': [], 'value': '1'},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'assignment', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'accessible'},{'id': '74', 'type': 'list', 'children': ['75', '76', '77', '78', '79'], 'value': "['\\\\', '-', '|', '/', '.']"},{'id': '75', 'type': 'string', 'children': [], 'value': "'\\\\'"},{'id': '76', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '77', 'type': 'string', 'children': [], 'value': "'|'"},{'id': '78', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '79', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '80', 'type': 'if_statement', 'children': ['81', '96']},{'id': '81', 'type': 'boolean_operator', 'children': ['82', '89'], 'value': 'and'},{'id': '82', 'type': 'boolean_operator', 'children': ['83', '86'], 'value': 'and'},{'id': '83', 'type': 'comparison_operator', 'children': ['84', '85'], 'value': '!='},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '85', 'type': 'integer', 'children': [], 'value': '0'},{'id': '86', 'type': 'comparison_operator', 'children': ['87', '88'], 'value': '!='},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '88', 'type': 'integer', 'children': [], 'value': '0'},{'id': '89', 'type': 'comparison_operator', 'children': ['90', '93'], 'value': '=='},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'backtrack'},{'id': '93', 'type': 'list', 'children': ['94', '95'], 'value': '[0,0]'},{'id': '94', 'type': 'integer', 'children': [], 'value': '0'},{'id': '95', 'type': 'integer', 'children': [], 'value': '0'},{'id': '96', 'type': 'block', 'children': ['97']},{'id': '97', 'type': 'if_statement', 'children': ['98', '107']},{'id': '98', 'type': 'comparison_operator', 'children': ['99', '106'], 'value': '>'},{'id': '99', 'type': 'call', 'children': ['100', '103']},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'random'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'randint'},{'id': '103', 'type': 'argument_list', 'children': ['104', '105']},{'id': '104', 'type': 'integer', 'children': [], 'value': '1'},{'id': '105', 'type': 'integer', 'children': [], 'value': '10'},{'id': '106', 'type': 'integer', 'children': [], 'value': '6'},{'id': '107', 'type': 'block', 'children': ['108']},{'id': '108', 'type': 'if_statement', 'children': ['109', '126']},{'id': '109', 'type': 'comparison_operator', 'children': ['110', '125'], 'value': 'in'},{'id': '110', 'type': 'call', 'children': ['111', '116']},{'id': '111', 'type': 'attribute', 'children': ['112', '115']},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'grd'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'get_tile'},{'id': '116', 'type': 'argument_list', 'children': ['117', '122']},{'id': '117', 'type': 'binary_operator', 'children': ['118', '121'], 'value': '+'},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'current_y'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'current_x'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'accessible'},{'id': '126', 'type': 'block', 'children': ['127', '133', '152']},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'augmented_assignment', 'children': ['129', '132'], 'value': '+='},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'current_y'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'call', 'children': ['135', '138']},{'id': '135', 'type': 'attribute', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'lg_mv'},{'id': '138', 'type': 'argument_list', 'children': ['139', '140']},{'id': '139', 'type': 'integer', 'children': [], 'value': '3'},{'id': '140', 'type': 'binary_operator', 'children': ['141', '146'], 'value': '+'},{'id': '141', 'type': 'binary_operator', 'children': ['142', '145'], 'value': '+'},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '145', 'type': 'string', 'children': [], 'value': '": randomly moving Y axis "'},{'id': '146', 'type': 'call', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '148', 'type': 'argument_list', 'children': ['149']},{'id': '149', 'type': 'attribute', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'num_steps'},{'id': '152', 'type': 'return_statement', 'children': []},{'id': '153', 'type': 'if_statement', 'children': ['154', '157']},{'id': '154', 'type': 'comparison_operator', 'children': ['155', '156'], 'value': '=='},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '156', 'type': 'integer', 'children': [], 'value': '1'},{'id': '157', 'type': 'block', 'children': ['158', '200', '241', '283']},{'id': '158', 'type': 'if_statement', 'children': ['159', '176']},{'id': '159', 'type': 'comparison_operator', 'children': ['160', '175'], 'value': 'in'},{'id': '160', 'type': 'call', 'children': ['161', '166']},{'id': '161', 'type': 'attribute', 'children': ['162', '165']},{'id': '162', 'type': 'attribute', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'grd'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'get_tile'},{'id': '166', 'type': 'argument_list', 'children': ['167', '170']},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'current_y'},{'id': '170', 'type': 'binary_operator', 'children': ['171', '174'], 'value': '+'},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'current_x'},{'id': '174', 'type': 'integer', 'children': [], 'value': '1'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'accessible'},{'id': '176', 'type': 'block', 'children': ['177', '183']},{'id': '177', 'type': 'expression_statement', 'children': ['178']},{'id': '178', 'type': 'augmented_assignment', 'children': ['179', '182'], 'value': '+='},{'id': '179', 'type': 'attribute', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'current_x'},{'id': '182', 'type': 'integer', 'children': [], 'value': '1'},{'id': '183', 'type': 'ERROR', 'children': ['184', '187', '188']},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'lg_mv'},{'id': '187', 'type': 'integer', 'children': [], 'value': '3'},{'id': '188', 'type': 'comparison_operator', 'children': ['189', '198'], 'value': '=='},{'id': '189', 'type': 'binary_operator', 'children': ['190', '193', '197'], 'value': '+'},{'id': '190', 'type': 'attribute', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '193', 'type': 'ERROR', 'children': ['194', '195', '196']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'move'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'return'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'elif'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '198', 'type': 'unary_operator', 'children': ['199'], 'value': '-'},{'id': '199', 'type': 'integer', 'children': [], 'value': '1'},{'id': '200', 'type': 'if_statement', 'children': ['201', '218']},{'id': '201', 'type': 'comparison_operator', 'children': ['202', '217'], 'value': 'in'},{'id': '202', 'type': 'call', 'children': ['203', '208']},{'id': '203', 'type': 'attribute', 'children': ['204', '207']},{'id': '204', 'type': 'attribute', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'grd'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'get_tile'},{'id': '208', 'type': 'argument_list', 'children': ['209', '212']},{'id': '209', 'type': 'attribute', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'current_y'},{'id': '212', 'type': 'binary_operator', 'children': ['213', '216'], 'value': '-'},{'id': '213', 'type': 'attribute', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'current_x'},{'id': '216', 'type': 'integer', 'children': [], 'value': '1'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'accessible'},{'id': '218', 'type': 'block', 'children': ['219', '225']},{'id': '219', 'type': 'expression_statement', 'children': ['220']},{'id': '220', 'type': 'augmented_assignment', 'children': ['221', '224'], 'value': '-='},{'id': '221', 'type': 'attribute', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'current_x'},{'id': '224', 'type': 'integer', 'children': [], 'value': '1'},{'id': '225', 'type': 'ERROR', 'children': ['226', '229', '230']},{'id': '226', 'type': 'attribute', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'lg_mv'},{'id': '229', 'type': 'integer', 'children': [], 'value': '3'},{'id': '230', 'type': 'comparison_operator', 'children': ['231', '240'], 'value': '=='},{'id': '231', 'type': 'binary_operator', 'children': ['232', '235', '239'], 'value': '+'},{'id': '232', 'type': 'attribute', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '235', 'type': 'ERROR', 'children': ['236', '237', '238']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'move'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'return'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'elif'},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '240', 'type': 'integer', 'children': [], 'value': '1'},{'id': '241', 'type': 'if_statement', 'children': ['242', '259']},{'id': '242', 'type': 'comparison_operator', 'children': ['243', '258'], 'value': 'in'},{'id': '243', 'type': 'call', 'children': ['244', '249']},{'id': '244', 'type': 'attribute', 'children': ['245', '248']},{'id': '245', 'type': 'attribute', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'grd'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'get_tile'},{'id': '249', 'type': 'argument_list', 'children': ['250', '255']},{'id': '250', 'type': 'binary_operator', 'children': ['251', '254'], 'value': '+'},{'id': '251', 'type': 'attribute', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'current_y'},{'id': '254', 'type': 'integer', 'children': [], 'value': '1'},{'id': '255', 'type': 'attribute', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'current_x'},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'accessible'},{'id': '259', 'type': 'block', 'children': ['260', '266']},{'id': '260', 'type': 'expression_statement', 'children': ['261']},{'id': '261', 'type': 'augmented_assignment', 'children': ['262', '265'], 'value': '+='},{'id': '262', 'type': 'attribute', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'current_y'},{'id': '265', 'type': 'integer', 'children': [], 'value': '1'},{'id': '266', 'type': 'ERROR', 'children': ['267', '270', '271']},{'id': '267', 'type': 'attribute', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'lg_mv'},{'id': '270', 'type': 'integer', 'children': [], 'value': '3'},{'id': '271', 'type': 'comparison_operator', 'children': ['272', '281'], 'value': '=='},{'id': '272', 'type': 'binary_operator', 'children': ['273', '276', '280'], 'value': '+'},{'id': '273', 'type': 'attribute', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '276', 'type': 'ERROR', 'children': ['277', '278', '279']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'move'},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'return'},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'elif'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '281', 'type': 'unary_operator', 'children': ['282'], 'value': '-'},{'id': '282', 'type': 'integer', 'children': [], 'value': '1'},{'id': '283', 'type': 'if_statement', 'children': ['284', '301']},{'id': '284', 'type': 'comparison_operator', 'children': ['285', '300'], 'value': 'in'},{'id': '285', 'type': 'call', 'children': ['286', '291']},{'id': '286', 'type': 'attribute', 'children': ['287', '290']},{'id': '287', 'type': 'attribute', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'grd'},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'get_tile'},{'id': '291', 'type': 'argument_list', 'children': ['292', '297']},{'id': '292', 'type': 'binary_operator', 'children': ['293', '296'], 'value': '-'},{'id': '293', 'type': 'attribute', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'current_y'},{'id': '296', 'type': 'integer', 'children': [], 'value': '1'},{'id': '297', 'type': 'attribute', 'children': ['298', '299']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'current_x'},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'accessible'},{'id': '301', 'type': 'block', 'children': ['302', '308']},{'id': '302', 'type': 'expression_statement', 'children': ['303']},{'id': '303', 'type': 'augmented_assignment', 'children': ['304', '307'], 'value': '-='},{'id': '304', 'type': 'attribute', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'current_y'},{'id': '307', 'type': 'integer', 'children': [], 'value': '1'},{'id': '308', 'type': 'ERROR', 'children': ['309', '312', '313']},{'id': '309', 'type': 'attribute', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'lg_mv'},{'id': '312', 'type': 'integer', 'children': [], 'value': '3'},{'id': '313', 'type': 'binary_operator', 'children': ['314', '317', '319'], 'value': '+'},{'id': '314', 'type': 'attribute', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '317', 'type': 'ERROR', 'children': ['318']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'move'},{'id': '319', 'type': 'call', 'children': ['320', '342']},{'id': '320', 'type': 'attribute', 'children': ['321', '341']},{'id': '321', 'type': 'attribute', 'children': ['322', '338', '340']},{'id': '322', 'type': 'call', 'children': ['323', '330']},{'id': '323', 'type': 'attribute', 'children': ['324', '329']},{'id': '324', 'type': 'attribute', 'children': ['325', '326', '328']},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'return'},{'id': '326', 'type': 'ERROR', 'children': ['327']},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'grd'},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'set_tile'},{'id': '330', 'type': 'argument_list', 'children': ['331', '334', '337']},{'id': '331', 'type': 'attribute', 'children': ['332', '333']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '333', 'type': 'identifier', 'children': [], 'value': 'start_y'},{'id': '334', 'type': 'attribute', 'children': ['335', '336']},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'start_x'},{'id': '337', 'type': 'string', 'children': [], 'value': "'A'"},{'id': '338', 'type': 'ERROR', 'children': ['339']},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '340', 'type': 'identifier', 'children': [], 'value': 'grd'},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'save'},{'id': '342', 'type': 'argument_list', 'children': ['343']},{'id': '343', 'type': 'call', 'children': ['344', '349']},{'id': '344', 'type': 'attribute', 'children': ['345', '348']},{'id': '345', 'type': 'attribute', 'children': ['346', '347']},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '348', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '349', 'type': 'argument_list', 'children': ['350', '355']},{'id': '350', 'type': 'call', 'children': ['351', '354']},{'id': '351', 'type': 'attribute', 'children': ['352', '353']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'getcwd'},{'id': '354', 'type': 'argument_list', 'children': []},{'id': '355', 'type': 'string', 'children': [], 'value': "'agent.txt'"} | def do_your_job(self):
y,x = self.get_intended_direction()
if self.target_x == self.current_x and self.target_y == self.current_y:
if len(self.results) == 0:
self.results.append("TARGET ACQUIRED")
self.lg_mv(2, self.name + ": TARGET ACQUIRED" )
return
self.num_steps += 1
accessible = ['\\', '-', '|', '/', '.']
if y != 0 and x != 0 and self.backtrack == [0,0]:
if random.randint(1,10) > 6:
if self.grd.get_tile(self.current_y + y, self.current_x) in accessible:
self.current_y += y
self.lg_mv(3, self.name + ": randomly moving Y axis " + str(self.num_steps) )
return
if x == 1:
if self.grd.get_tile(self.current_y, self.current_x + 1) in accessible:
self.current_x += 1
self.lg_mv(3, self.name + ": move
return
elif x == -1:
if self.grd.get_tile(self.current_y, self.current_x - 1) in accessible:
self.current_x -= 1
self.lg_mv(3, self.name + ": move
return
elif y == 1:
if self.grd.get_tile(self.current_y + 1, self.current_x) in accessible:
self.current_y += 1
self.lg_mv(3, self.name + ": move
return
elif y == -1:
if self.grd.get_tile(self.current_y - 1, self.current_x) in accessible:
self.current_y -= 1
self.lg_mv(3, self.name + ": move
return
self.grd.set_tile(self.start_y, self.start_x, 'A')
self.grd.save(os.path.join(os.getcwd(), 'agent.txt')) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'save_filelist'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'opFile'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'opFormat'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '9', 'type': 'string', 'children': [], 'value': "','"},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '12', 'type': 'string', 'children': [], 'value': '\'"\''},{'id': '13', 'type': 'block', 'children': ['14', '25', '48']},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'op_folder'},{'id': '17', 'type': 'call', 'children': ['18', '23']},{'id': '18', 'type': 'attribute', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'dirname'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'opFile'},{'id': '25', 'type': 'if_statement', 'children': ['26', '29']},{'id': '26', 'type': 'comparison_operator', 'children': ['27', '28'], 'value': 'is'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'op_folder'},{'id': '28', 'type': 'None', 'children': []},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'if_statement', 'children': ['31', '40']},{'id': '31', 'type': 'not_operator', 'children': ['32']},{'id': '32', 'type': 'call', 'children': ['33', '38']},{'id': '33', 'type': 'attribute', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'exists'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'op_folder'},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'makedirs'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'op_folder'},{'id': '48', 'type': 'with_statement', 'children': ['49', '59']},{'id': '49', 'type': 'with_clause', 'children': ['50']},{'id': '50', 'type': 'with_item', 'children': ['51']},{'id': '51', 'type': 'as_pattern', 'children': ['52', '57']},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '54', 'type': 'argument_list', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'opFile'},{'id': '56', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '57', 'type': 'as_pattern_target', 'children': ['58']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'fout'},{'id': '59', 'type': 'block', 'children': ['60', '69', '82', '89']},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'fout'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'binary_operator', 'children': ['67', '68'], 'value': '+'},{'id': '67', 'type': 'string', 'children': [], 'value': '"fullFilename"'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '69', 'type': 'for_statement', 'children': ['70', '71', '72']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'colHeading'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'opFormat'},{'id': '72', 'type': 'block', 'children': ['73']},{'id': '73', 'type': 'expression_statement', 'children': ['74']},{'id': '74', 'type': 'call', 'children': ['75', '78']},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'fout'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '78', 'type': 'argument_list', 'children': ['79']},{'id': '79', 'type': 'binary_operator', 'children': ['80', '81'], 'value': '+'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'colHeading'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'fout'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '89', 'type': 'for_statement', 'children': ['90', '91', '94']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'filelist'},{'id': '94', 'type': 'block', 'children': ['95', '105', '215']},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '98', 'type': 'binary_operator', 'children': ['99', '104'], 'value': '+'},{'id': '99', 'type': 'binary_operator', 'children': ['100', '103'], 'value': '+'},{'id': '100', 'type': 'binary_operator', 'children': ['101', '102'], 'value': '+'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '105', 'type': 'try_statement', 'children': ['106', '208']},{'id': '106', 'type': 'block', 'children': ['107']},{'id': '107', 'type': 'for_statement', 'children': ['108', '109', '110']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'fld'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'opFormat'},{'id': '110', 'type': 'block', 'children': ['111', '135', '157', '184']},{'id': '111', 'type': 'if_statement', 'children': ['112', '115']},{'id': '112', 'type': 'comparison_operator', 'children': ['113', '114'], 'value': '=='},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'fld'},{'id': '114', 'type': 'string', 'children': [], 'value': '"name"'},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '119', 'type': 'binary_operator', 'children': ['120', '134'], 'value': '+'},{'id': '120', 'type': 'binary_operator', 'children': ['121', '133'], 'value': '+'},{'id': '121', 'type': 'binary_operator', 'children': ['122', '125'], 'value': '+'},{'id': '122', 'type': 'binary_operator', 'children': ['123', '124'], 'value': '+'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '125', 'type': 'call', 'children': ['126', '131']},{'id': '126', 'type': 'attribute', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '131', 'type': 'argument_list', 'children': ['132']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '135', 'type': 'if_statement', 'children': ['136', '139']},{'id': '136', 'type': 'comparison_operator', 'children': ['137', '138'], 'value': '=='},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'fld'},{'id': '138', 'type': 'string', 'children': [], 'value': '"date"'},{'id': '139', 'type': 'block', 'children': ['140']},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '143', 'type': 'binary_operator', 'children': ['144', '156'], 'value': '+'},{'id': '144', 'type': 'binary_operator', 'children': ['145', '155'], 'value': '+'},{'id': '145', 'type': 'binary_operator', 'children': ['146', '149'], 'value': '+'},{'id': '146', 'type': 'binary_operator', 'children': ['147', '148'], 'value': '+'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '149', 'type': 'call', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'GetDateAsString'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '157', 'type': 'if_statement', 'children': ['158', '161']},{'id': '158', 'type': 'comparison_operator', 'children': ['159', '160'], 'value': '=='},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'fld'},{'id': '160', 'type': 'string', 'children': [], 'value': '"size"'},{'id': '161', 'type': 'block', 'children': ['162']},{'id': '162', 'type': 'expression_statement', 'children': ['163']},{'id': '163', 'type': 'assignment', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '165', 'type': 'binary_operator', 'children': ['166', '183'], 'value': '+'},{'id': '166', 'type': 'binary_operator', 'children': ['167', '182'], 'value': '+'},{'id': '167', 'type': 'binary_operator', 'children': ['168', '171'], 'value': '+'},{'id': '168', 'type': 'binary_operator', 'children': ['169', '170'], 'value': '+'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'call', 'children': ['175', '180']},{'id': '175', 'type': 'attribute', 'children': ['176', '179']},{'id': '176', 'type': 'attribute', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'getsize'},{'id': '180', 'type': 'argument_list', 'children': ['181']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '184', 'type': 'if_statement', 'children': ['185', '188']},{'id': '185', 'type': 'comparison_operator', 'children': ['186', '187'], 'value': '=='},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'fld'},{'id': '187', 'type': 'string', 'children': [], 'value': '"path"'},{'id': '188', 'type': 'block', 'children': ['189']},{'id': '189', 'type': 'expression_statement', 'children': ['190']},{'id': '190', 'type': 'assignment', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '192', 'type': 'binary_operator', 'children': ['193', '207'], 'value': '+'},{'id': '193', 'type': 'binary_operator', 'children': ['194', '206'], 'value': '+'},{'id': '194', 'type': 'binary_operator', 'children': ['195', '198'], 'value': '+'},{'id': '195', 'type': 'binary_operator', 'children': ['196', '197'], 'value': '+'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '198', 'type': 'call', 'children': ['199', '204']},{'id': '199', 'type': 'attribute', 'children': ['200', '203']},{'id': '200', 'type': 'attribute', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'dirname'},{'id': '204', 'type': 'argument_list', 'children': ['205']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'qu'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '208', 'type': 'except_clause', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'IOError'},{'id': '210', 'type': 'block', 'children': ['211']},{'id': '211', 'type': 'expression_statement', 'children': ['212']},{'id': '212', 'type': 'augmented_assignment', 'children': ['213', '214'], 'value': '+='},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '214', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '215', 'type': 'try_statement', 'children': ['216', '245']},{'id': '216', 'type': 'block', 'children': ['217', '238']},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'call', 'children': ['219', '222']},{'id': '219', 'type': 'attribute', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'fout'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '222', 'type': 'argument_list', 'children': ['223']},{'id': '223', 'type': 'call', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '225', 'type': 'argument_list', 'children': ['226']},{'id': '226', 'type': 'call', 'children': ['227', '236']},{'id': '227', 'type': 'attribute', 'children': ['228', '235']},{'id': '228', 'type': 'call', 'children': ['229', '232']},{'id': '229', 'type': 'attribute', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '232', 'type': 'argument_list', 'children': ['233', '234']},{'id': '233', 'type': 'string', 'children': [], 'value': "'ascii'"},{'id': '234', 'type': 'string', 'children': [], 'value': "'ignore'"},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '236', 'type': 'argument_list', 'children': ['237']},{'id': '237', 'type': 'string', 'children': [], 'value': "'utf-8'"},{'id': '238', 'type': 'expression_statement', 'children': ['239']},{'id': '239', 'type': 'call', 'children': ['240', '243']},{'id': '240', 'type': 'attribute', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'fout'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '243', 'type': 'argument_list', 'children': ['244']},{'id': '244', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '245', 'type': 'except_clause', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'IOError'},{'id': '247', 'type': 'block', 'children': ['248']},{'id': '248', 'type': 'pass_statement', 'children': []} | def save_filelist(self, opFile, opFormat, delim=',', qu='"'):
op_folder = os.path.dirname(opFile)
if op_folder is not None:
if not os.path.exists(op_folder):
os.makedirs(op_folder)
with open(opFile,'w') as fout:
fout.write("fullFilename" + delim)
for colHeading in opFormat:
fout.write(colHeading + delim)
fout.write('\n')
for f in self.filelist:
line = qu + f + qu + delim
try:
for fld in opFormat:
if fld == "name":
line = line + qu + os.path.basename(f) + qu + delim
if fld == "date":
line = line + qu + self.GetDateAsString(f) + qu + delim
if fld == "size":
line = line + qu + str(os.path.getsize(f)) + qu + delim
if fld == "path":
line = line + qu + os.path.dirname(f) + qu + delim
except IOError:
line += '\n'
try:
fout.write (str(line.encode('ascii', 'ignore').decode('utf-8')))
fout.write ('\n')
except IOError:
pass |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'type'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'variant_probe_coverages'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'block', 'children': ['10', '23', '27', '44', '61', '78']},{'id': '10', 'type': 'if_statement', 'children': ['11', '17']},{'id': '11', 'type': 'not_operator', 'children': ['12']},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '14', 'type': 'argument_list', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'variant_probe_coverages'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'variant_probe_coverages'},{'id': '21', 'type': 'list', 'children': ['22'], 'value': '[variant_probe_coverages]'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'variant_probe_coverages'},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'calls'},{'id': '26', 'type': 'list', 'children': [], 'value': '[]'},{'id': '27', 'type': 'for_statement', 'children': ['28', '29', '30']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'variant_probe_coverage'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'variant_probe_coverages'},{'id': '30', 'type': 'block', 'children': ['31']},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'calls'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': '_type_variant_probe_coverages'},{'id': '41', 'type': 'argument_list', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'variant_probe_coverage'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'variant'},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'hom_alt_calls'},{'id': '47', 'type': 'list_comprehension', 'children': ['48', '49', '52']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '49', 'type': 'for_in_clause', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'calls'},{'id': '52', 'type': 'if_clause', 'children': ['53']},{'id': '53', 'type': 'comparison_operator', 'children': ['54', '60'], 'value': '>'},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'subscript', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '59', 'type': 'string', 'children': [], 'value': '"genotype"'},{'id': '60', 'type': 'integer', 'children': [], 'value': '1'},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'het_calls'},{'id': '64', 'type': 'list_comprehension', 'children': ['65', '66', '69']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '66', 'type': 'for_in_clause', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'calls'},{'id': '69', 'type': 'if_clause', 'children': ['70']},{'id': '70', 'type': 'comparison_operator', 'children': ['71', '77'], 'value': '=='},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'subscript', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '76', 'type': 'string', 'children': [], 'value': '"genotype"'},{'id': '77', 'type': 'integer', 'children': [], 'value': '1'},{'id': '78', 'type': 'if_statement', 'children': ['79', '80', '104', '130']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'hom_alt_calls'},{'id': '80', 'type': 'block', 'children': ['81', '100']},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'hom_alt_calls'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '86', 'type': 'argument_list', 'children': ['87', '97']},{'id': '87', 'type': 'keyword_argument', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '89', 'type': 'lambda', 'children': ['90', '92']},{'id': '90', 'type': 'lambda_parameters', 'children': ['91']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '92', 'type': 'subscript', 'children': ['93', '96']},{'id': '93', 'type': 'subscript', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '95', 'type': 'string', 'children': [], 'value': '"info"'},{'id': '96', 'type': 'string', 'children': [], 'value': '"conf"'},{'id': '97', 'type': 'keyword_argument', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '99', 'type': 'True', 'children': []},{'id': '100', 'type': 'return_statement', 'children': ['101']},{'id': '101', 'type': 'subscript', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'hom_alt_calls'},{'id': '103', 'type': 'integer', 'children': [], 'value': '0'},{'id': '104', 'type': 'elif_clause', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'het_calls'},{'id': '106', 'type': 'block', 'children': ['107', '126']},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'call', 'children': ['109', '112']},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'het_calls'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '112', 'type': 'argument_list', 'children': ['113', '123']},{'id': '113', 'type': 'keyword_argument', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '115', 'type': 'lambda', 'children': ['116', '118']},{'id': '116', 'type': 'lambda_parameters', 'children': ['117']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '118', 'type': 'subscript', 'children': ['119', '122']},{'id': '119', 'type': 'subscript', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '121', 'type': 'string', 'children': [], 'value': '"info"'},{'id': '122', 'type': 'string', 'children': [], 'value': '"conf"'},{'id': '123', 'type': 'keyword_argument', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '125', 'type': 'True', 'children': []},{'id': '126', 'type': 'return_statement', 'children': ['127']},{'id': '127', 'type': 'subscript', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'het_calls'},{'id': '129', 'type': 'integer', 'children': [], 'value': '0'},{'id': '130', 'type': 'else_clause', 'children': ['131']},{'id': '131', 'type': 'block', 'children': ['132', '151']},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'call', 'children': ['134', '137']},{'id': '134', 'type': 'attribute', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'calls'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '137', 'type': 'argument_list', 'children': ['138', '148']},{'id': '138', 'type': 'keyword_argument', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '140', 'type': 'lambda', 'children': ['141', '143']},{'id': '141', 'type': 'lambda_parameters', 'children': ['142']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '143', 'type': 'subscript', 'children': ['144', '147']},{'id': '144', 'type': 'subscript', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '146', 'type': 'string', 'children': [], 'value': '"info"'},{'id': '147', 'type': 'string', 'children': [], 'value': '"conf"'},{'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '150', 'type': 'True', 'children': []},{'id': '151', 'type': 'return_statement', 'children': ['152']},{'id': '152', 'type': 'subscript', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'calls'},{'id': '154', 'type': 'integer', 'children': [], 'value': '0'} | def type(self, variant_probe_coverages, variant=None):
if not isinstance(variant_probe_coverages, list):
variant_probe_coverages = [variant_probe_coverages]
calls = []
for variant_probe_coverage in variant_probe_coverages:
calls.append(
self._type_variant_probe_coverages(
variant_probe_coverage, variant))
hom_alt_calls = [c for c in calls if sum(c["genotype"]) > 1]
het_calls = [c for c in calls if sum(c["genotype"]) == 1]
if hom_alt_calls:
hom_alt_calls.sort(key=lambda x: x["info"]["conf"], reverse=True)
return hom_alt_calls[0]
elif het_calls:
het_calls.sort(key=lambda x: x["info"]["conf"], reverse=True)
return het_calls[0]
else:
calls.sort(key=lambda x: x["info"]["conf"], reverse=True)
return calls[0] |
Subsets and Splits