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{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_paren_group'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'paren_string'},{'id': '5', 'type': 'block', 'children': ['6', '51']},{'id': '6', 'type': 'function_definition', 'children': ['7', '8', '10']},{'id': '7', 'type': 'function_name', 'children': [], 'value': 'max_depth'},{'id': '8', 'type': 'parameters', 'children': ['9']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '10', 'type': 'block', 'children': ['11', '15', '19', '49']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'depth'},{'id': '14', 'type': 'integer', 'children': [], 'value': '0'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'max_depth'},{'id': '18', 'type': 'integer', 'children': [], 'value': '0'},{'id': '19', 'type': 'for_statement', 'children': ['20', '21', '22']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'if_statement', 'children': ['24', '27', '40']},{'id': '24', 'type': 'comparison_operator', 'children': ['25', '26'], 'value': '=='},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '26', 'type': 'string', 'children': [], 'value': "'('"},{'id': '27', 'type': 'block', 'children': ['28', '32']},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'augmented_assignment', 'children': ['30', '31'], 'value': '+='},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'depth'},{'id': '31', 'type': 'integer', 'children': [], 'value': '1'},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'max_depth'},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '37', 'type': 'argument_list', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'max_depth'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'depth'},{'id': '40', 'type': 'elif_clause', 'children': ['41', '44']},{'id': '41', 'type': 'comparison_operator', 'children': ['42', '43'], 'value': '=='},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '43', 'type': 'string', 'children': [], 'value': "')'"},{'id': '44', 'type': 'block', 'children': ['45']},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'augmented_assignment', 'children': ['47', '48'], 'value': '-='},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'depth'},{'id': '48', 'type': 'integer', 'children': [], 'value': '1'},{'id': '49', 'type': 'return_statement', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'max_depth'},{'id': '51', 'type': 'return_statement', 'children': ['52']},{'id': '52', 'type': 'list_comprehension', 'children': ['53', '57', '65']},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'max_depth'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '57', 'type': 'for_in_clause', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'paren_string'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'string', 'children': [], 'value': "' '"},{'id': '65', 'type': 'if_clause', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'group'} | def parse_paren_group(paren_string):
def max_depth(s):
depth = 0
max_depth = 0
for c in s:
if c == '(':
depth += 1
max_depth = max(max_depth, depth)
elif c == ')':
depth -= 1
return max_depth
return [max_depth(group) for group in paren_string.split(' ') if group]
|
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'gather_categories'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'imap'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'categories'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'block', 'children': ['10', '31', '52', '58', '65', '124', '147', '208', '214', '236', '248', '330']},{'id': '10', 'type': 'if_statement', 'children': ['11', '14']},{'id': '11', 'type': 'comparison_operator', 'children': ['12', '13'], 'value': 'is'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'categories'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'return_statement', 'children': ['16']},{'id': '16', 'type': 'dictionary', 'children': ['17']},{'id': '17', 'type': 'pair', 'children': ['18', '19']},{'id': '18', 'type': 'string', 'children': [], 'value': '"default"'},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'DataCategory'},{'id': '21', 'type': 'argument_list', 'children': ['22', '30']},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '24', 'type': 'argument_list', 'children': ['25']},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'imap'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '29', 'type': 'argument_list', 'children': []},{'id': '30', 'type': 'dictionary', 'children': []},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'cat_ids'},{'id': '34', 'type': 'list_comprehension', 'children': ['35', '41', '44']},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '41', 'type': 'for_in_clause', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'categories'},{'id': '44', 'type': 'if_clause', 'children': ['45']},{'id': '45', 'type': 'boolean_operator', 'children': ['46', '49'], 'value': 'and'},{'id': '46', 'type': 'comparison_operator', 'children': ['47', '48'], 'value': 'in'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '49', 'type': 'comparison_operator', 'children': ['50', '51'], 'value': 'not'},{'id': '50', 'type': 'string', 'children': [], 'value': '"="'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '55', 'type': 'call', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '57', 'type': 'argument_list', 'children': []},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'defaultdict'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '65', 'type': 'for_statement', 'children': ['66', '69', '73']},{'id': '66', 'type': 'pattern_list', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'categories'},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'if_statement', 'children': ['75', '89']},{'id': '75', 'type': 'boolean_operator', 'children': ['76', '79'], 'value': 'and'},{'id': '76', 'type': 'comparison_operator', 'children': ['77', '78'], 'value': 'in'},{'id': '77', 'type': 'string', 'children': [], 'value': '"="'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '79', 'type': 'comparison_operator', 'children': ['80', '88'], 'value': 'in'},{'id': '80', 'type': 'subscript', 'children': ['81', '87']},{'id': '81', 'type': 'call', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'string', 'children': [], 'value': '"="'},{'id': '87', 'type': 'integer', 'children': [], 'value': '0'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '89', 'type': 'block', 'children': ['90', '108']},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'assignment', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'cat_name'},{'id': '93', 'type': 'subscript', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '95', 'type': 'call', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '99', 'type': 'argument_list', 'children': ['100']},{'id': '100', 'type': 'subscript', 'children': ['101', '107']},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'string', 'children': [], 'value': '"="'},{'id': '107', 'type': 'integer', 'children': [], 'value': '0'},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'call', 'children': ['110', '115']},{'id': '110', 'type': 'attribute', 'children': ['111', '114']},{'id': '111', 'type': 'subscript', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'cat_name'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '115', 'type': 'argument_list', 'children': ['116']},{'id': '116', 'type': 'subscript', 'children': ['117', '123']},{'id': '117', 'type': 'call', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '121', 'type': 'argument_list', 'children': ['122']},{'id': '122', 'type': 'string', 'children': [], 'value': '"="'},{'id': '123', 'type': 'integer', 'children': [], 'value': '1'},{'id': '124', 'type': 'if_statement', 'children': ['125', '130']},{'id': '125', 'type': 'boolean_operator', 'children': ['126', '128'], 'value': 'and'},{'id': '126', 'type': 'not_operator', 'children': ['127']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'cat_ids'},{'id': '128', 'type': 'not_operator', 'children': ['129']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '130', 'type': 'block', 'children': ['131']},{'id': '131', 'type': 'return_statement', 'children': ['132']},{'id': '132', 'type': 'dictionary', 'children': ['133']},{'id': '133', 'type': 'pair', 'children': ['134', '135']},{'id': '134', 'type': 'string', 'children': [], 'value': '"default"'},{'id': '135', 'type': 'call', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'DataCategory'},{'id': '137', 'type': 'argument_list', 'children': ['138', '146']},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'call', 'children': ['142', '145']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'imap'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '145', 'type': 'argument_list', 'children': []},{'id': '146', 'type': 'dictionary', 'children': []},{'id': '147', 'type': 'if_statement', 'children': ['148', '152']},{'id': '148', 'type': 'boolean_operator', 'children': ['149', '150'], 'value': 'and'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'cat_ids'},{'id': '150', 'type': 'not_operator', 'children': ['151']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '152', 'type': 'block', 'children': ['153', '206']},{'id': '153', 'type': 'for_statement', 'children': ['154', '157', '162']},{'id': '154', 'type': 'pattern_list', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'sid'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '157', 'type': 'call', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'imap'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '161', 'type': 'argument_list', 'children': []},{'id': '162', 'type': 'block', 'children': ['163', '178', '195']},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'assignment', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'cat_name'},{'id': '166', 'type': 'call', 'children': ['167', '170']},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'string', 'children': [], 'value': '"_"'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '170', 'type': 'argument_list', 'children': ['171']},{'id': '171', 'type': 'list_comprehension', 'children': ['172', '175']},{'id': '172', 'type': 'subscript', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'cid'},{'id': '175', 'type': 'for_in_clause', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'cid'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'cat_ids'},{'id': '178', 'type': 'if_statement', 'children': ['179', '182']},{'id': '179', 'type': 'comparison_operator', 'children': ['180', '181'], 'value': 'not'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'cat_name'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '182', 'type': 'block', 'children': ['183']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'assignment', 'children': ['185', '188']},{'id': '185', 'type': 'subscript', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'cat_name'},{'id': '188', 'type': 'call', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'DataCategory'},{'id': '190', 'type': 'argument_list', 'children': ['191', '194']},{'id': '191', 'type': 'call', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '193', 'type': 'argument_list', 'children': []},{'id': '194', 'type': 'dictionary', 'children': []},{'id': '195', 'type': 'expression_statement', 'children': ['196']},{'id': '196', 'type': 'call', 'children': ['197', '204']},{'id': '197', 'type': 'attribute', 'children': ['198', '203']},{'id': '198', 'type': 'attribute', 'children': ['199', '202']},{'id': '199', 'type': 'subscript', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'cat_name'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'sids'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '204', 'type': 'argument_list', 'children': ['205']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'sid'},{'id': '206', 'type': 'return_statement', 'children': ['207']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '208', 'type': 'expression_statement', 'children': ['209']},{'id': '209', 'type': 'assignment', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'cond_ids'},{'id': '211', 'type': 'call', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '213', 'type': 'argument_list', 'children': []},{'id': '214', 'type': 'for_statement', 'children': ['215', '216', '217']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '217', 'type': 'block', 'children': ['218']},{'id': '218', 'type': 'try_statement', 'children': ['219', '232']},{'id': '219', 'type': 'block', 'children': ['220']},{'id': '220', 'type': 'expression_statement', 'children': ['221']},{'id': '221', 'type': 'call', 'children': ['222', '225']},{'id': '222', 'type': 'attribute', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'cond_ids'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '225', 'type': 'argument_list', 'children': ['226']},{'id': '226', 'type': 'call', 'children': ['227', '230']},{'id': '227', 'type': 'attribute', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '230', 'type': 'argument_list', 'children': ['231']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '232', 'type': 'except_clause', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '234', 'type': 'block', 'children': ['235']},{'id': '235', 'type': 'continue_statement', 'children': []},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'assignment', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'idx_to_test'},{'id': '239', 'type': 'call', 'children': ['240', '246']},{'id': '240', 'type': 'attribute', 'children': ['241', '245']},{'id': '241', 'type': 'call', 'children': ['242', '243']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '243', 'type': 'argument_list', 'children': ['244']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'cat_ids'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'union'},{'id': '246', 'type': 'argument_list', 'children': ['247']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'cond_ids'},{'id': '248', 'type': 'for_statement', 'children': ['249', '252', '257']},{'id': '249', 'type': 'pattern_list', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'sid'},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '252', 'type': 'call', 'children': ['253', '256']},{'id': '253', 'type': 'attribute', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'imap'},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '256', 'type': 'argument_list', 'children': []},{'id': '257', 'type': 'block', 'children': ['258']},{'id': '258', 'type': 'if_statement', 'children': ['259', '278']},{'id': '259', 'type': 'call', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '261', 'type': 'argument_list', 'children': ['262']},{'id': '262', 'type': 'list_comprehension', 'children': ['263', '275']},{'id': '263', 'type': 'comparison_operator', 'children': ['264', '272'], 'value': 'in'},{'id': '264', 'type': 'subscript', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '266', 'type': 'call', 'children': ['267', '270']},{'id': '267', 'type': 'attribute', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '270', 'type': 'argument_list', 'children': ['271']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '272', 'type': 'subscript', 'children': ['273', '274']},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '275', 'type': 'for_in_clause', 'children': ['276', '277']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'conditions'},{'id': '278', 'type': 'block', 'children': ['279', '294', '319']},{'id': '279', 'type': 'expression_statement', 'children': ['280']},{'id': '280', 'type': 'assignment', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '282', 'type': 'call', 'children': ['283', '286']},{'id': '283', 'type': 'attribute', 'children': ['284', '285']},{'id': '284', 'type': 'string', 'children': [], 'value': '"_"'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '286', 'type': 'argument_list', 'children': ['287']},{'id': '287', 'type': 'list_comprehension', 'children': ['288', '291']},{'id': '288', 'type': 'subscript', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '291', 'type': 'for_in_clause', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'idx_to_test'},{'id': '294', 'type': 'try_statement', 'children': ['295', '304']},{'id': '295', 'type': 'block', 'children': ['296']},{'id': '296', 'type': 'assert_statement', 'children': ['297']},{'id': '297', 'type': 'comparison_operator', 'children': ['298', '299'], 'value': 'in'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '299', 'type': 'call', 'children': ['300', '303']},{'id': '300', 'type': 'attribute', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '303', 'type': 'argument_list', 'children': []},{'id': '304', 'type': 'except_clause', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'AssertionError'},{'id': '306', 'type': 'block', 'children': ['307']},{'id': '307', 'type': 'expression_statement', 'children': ['308']},{'id': '308', 'type': 'assignment', 'children': ['309', '312']},{'id': '309', 'type': 'subscript', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '312', 'type': 'call', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'DataCategory'},{'id': '314', 'type': 'argument_list', 'children': ['315', '318']},{'id': '315', 'type': 'call', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '317', 'type': 'argument_list', 'children': []},{'id': '318', 'type': 'dictionary', 'children': []},{'id': '319', 'type': 'expression_statement', 'children': ['320']},{'id': '320', 'type': 'call', 'children': ['321', '328']},{'id': '321', 'type': 'attribute', 'children': ['322', '327']},{'id': '322', 'type': 'attribute', 'children': ['323', '326']},{'id': '323', 'type': 'subscript', 'children': ['324', '325']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'sids'},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '328', 'type': 'argument_list', 'children': ['329']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'sid'},{'id': '330', 'type': 'try_statement', 'children': ['331', '339', '358']},{'id': '331', 'type': 'block', 'children': ['332']},{'id': '332', 'type': 'assert_statement', 'children': ['333']},{'id': '333', 'type': 'comparison_operator', 'children': ['334', '338'], 'value': '>'},{'id': '334', 'type': 'call', 'children': ['335', '336']},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '336', 'type': 'argument_list', 'children': ['337']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '338', 'type': 'integer', 'children': [], 'value': '0'},{'id': '339', 'type': 'except_clause', 'children': ['340', '341']},{'id': '340', 'type': 'identifier', 'children': [], 'value': 'AssertionError'},{'id': '341', 'type': 'block', 'children': ['342']},{'id': '342', 'type': 'return_statement', 'children': ['343']},{'id': '343', 'type': 'dictionary', 'children': ['344']},{'id': '344', 'type': 'pair', 'children': ['345', '346']},{'id': '345', 'type': 'string', 'children': [], 'value': '"default"'},{'id': '346', 'type': 'call', 'children': ['347', '348']},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'DataCategory'},{'id': '348', 'type': 'argument_list', 'children': ['349', '357']},{'id': '349', 'type': 'call', 'children': ['350', '351']},{'id': '350', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '351', 'type': 'argument_list', 'children': ['352']},{'id': '352', 'type': 'call', 'children': ['353', '356']},{'id': '353', 'type': 'attribute', 'children': ['354', '355']},{'id': '354', 'type': 'identifier', 'children': [], 'value': 'imap'},{'id': '355', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '356', 'type': 'argument_list', 'children': []},{'id': '357', 'type': 'dictionary', 'children': []},{'id': '358', 'type': 'else_clause', 'children': ['359']},{'id': '359', 'type': 'block', 'children': ['360']},{'id': '360', 'type': 'return_statement', 'children': ['361']},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'table'} | def gather_categories(imap, header, categories=None):
if categories is None:
return {"default": DataCategory(set(imap.keys()), {})}
cat_ids = [header.index(cat)
for cat in categories if cat in header and "=" not in cat]
table = OrderedDict()
conditions = defaultdict(set)
for i, cat in enumerate(categories):
if "=" in cat and cat.split("=")[0] in header:
cat_name = header[header.index(cat.split("=")[0])]
conditions[cat_name].add(cat.split("=")[1])
if not cat_ids and not conditions:
return {"default": DataCategory(set(imap.keys()), {})}
if cat_ids and not conditions:
for sid, row in imap.items():
cat_name = "_".join([row[cid] for cid in cat_ids])
if cat_name not in table:
table[cat_name] = DataCategory(set(), {})
table[cat_name].sids.add(sid)
return table
cond_ids = set()
for k in conditions:
try:
cond_ids.add(header.index(k))
except ValueError:
continue
idx_to_test = set(cat_ids).union(cond_ids)
for sid, row in imap.items():
if all([row[header.index(c)] in conditions[c] for c in conditions]):
key = "_".join([row[idx] for idx in idx_to_test])
try:
assert key in table.keys()
except AssertionError:
table[key] = DataCategory(set(), {})
table[key].sids.add(sid)
try:
assert len(table) > 0
except AssertionError:
return {"default": DataCategory(set(imap.keys()), {})}
else:
return table |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'color_mapping'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'sample_map'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'group_column'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'color_column'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'block', 'children': ['11', '17', '27', '99']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'group_colors'},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '16', 'type': 'argument_list', 'children': []},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'group_gather'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'gather_categories'},{'id': '22', 'type': 'argument_list', 'children': ['23', '24', '25']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'sample_map'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '25', 'type': 'list', 'children': ['26'], 'value': '[group_column]'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'group_column'},{'id': '27', 'type': 'if_statement', 'children': ['28', '31', '72']},{'id': '28', 'type': 'comparison_operator', 'children': ['29', '30'], 'value': 'is'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'color_column'},{'id': '30', 'type': 'None', 'children': []},{'id': '31', 'type': 'block', 'children': ['32', '42']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'color_gather'},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'gather_categories'},{'id': '37', 'type': 'argument_list', 'children': ['38', '39', '40']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'sample_map'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '40', 'type': 'list', 'children': ['41'], 'value': '[color_column]'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'color_column'},{'id': '42', 'type': 'for_statement', 'children': ['43', '44', '45']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'group_gather'},{'id': '45', 'type': 'block', 'children': ['46']},{'id': '46', 'type': 'for_statement', 'children': ['47', '48', '49']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'color_gather'},{'id': '49', 'type': 'block', 'children': ['50']},{'id': '50', 'type': 'if_statement', 'children': ['51', '65']},{'id': '51', 'type': 'call', 'children': ['52', '59']},{'id': '52', 'type': 'attribute', 'children': ['53', '58']},{'id': '53', 'type': 'attribute', 'children': ['54', '57']},{'id': '54', 'type': 'subscript', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'group_gather'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'sids'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'intersection'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'attribute', 'children': ['61', '64']},{'id': '61', 'type': 'subscript', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'color_gather'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'sids'},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '71']},{'id': '68', 'type': 'subscript', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'group_colors'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '72', 'type': 'else_clause', 'children': ['73']},{'id': '73', 'type': 'block', 'children': ['74', '85']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'bcolors'},{'id': '77', 'type': 'call', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'cycle'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'Set3_12'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'hex_colors'},{'id': '85', 'type': 'for_statement', 'children': ['86', '87', '88']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'group_gather'},{'id': '88', 'type': 'block', 'children': ['89']},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'assignment', 'children': ['91', '94']},{'id': '91', 'type': 'subscript', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'group_colors'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '94', 'type': 'call', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'bcolors'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '98', 'type': 'argument_list', 'children': []},{'id': '99', 'type': 'return_statement', 'children': ['100']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'group_colors'} | def color_mapping(sample_map, header, group_column, color_column=None):
group_colors = OrderedDict()
group_gather = gather_categories(sample_map, header, [group_column])
if color_column is not None:
color_gather = gather_categories(sample_map, header, [color_column])
for group in group_gather:
for color in color_gather:
if group_gather[group].sids.intersection(color_gather[color].sids):
group_colors[group] = color
else:
bcolors = itertools.cycle(Set3_12.hex_colors)
for group in group_gather:
group_colors[group] = bcolors.next()
return group_colors |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '29']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'shuffle_genome'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '12', '15', '16', '19', '22', '23', '26']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'fraction'},{'id': '8', 'type': 'call', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '10', 'type': 'argument_list', 'children': ['11']},{'id': '11', 'type': 'integer', 'children': [], 'value': '100'},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'plot'},{'id': '14', 'type': 'True', 'children': []},{'id': '15', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '16', 'type': 'default_parameter', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '18', 'type': 'float', 'children': [], 'value': '0.1'},{'id': '19', 'type': 'default_parameter', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'beta'},{'id': '21', 'type': 'integer', 'children': [], 'value': '100000'},{'id': '22', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '23', 'type': 'default_parameter', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'min_length'},{'id': '25', 'type': 'integer', 'children': [], 'value': '1000'},{'id': '26', 'type': 'default_parameter', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'max_length'},{'id': '28', 'type': 'integer', 'children': [], 'value': '200000'},{'id': '29', 'type': 'block', 'children': ['30', '39', '60', '67', '71', '152', '159', '242']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '33', 'type': 'binary_operator', 'children': ['34', '35'], 'value': '%'},{'id': '34', 'type': 'string', 'children': [], 'value': "'>randomized_%s'"},{'id': '35', 'type': '()', 'children': ['36']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'string', 'children': [], 'value': "''"},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'list_comprehension', 'children': ['51', '54']},{'id': '51', 'type': 'subscript', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '53', 'type': 'integer', 'children': [], 'value': '1'},{'id': '54', 'type': 'for_in_clause', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '56', 'type': 'call', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'parse_fasta'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'assignment', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'shuffled'},{'id': '70', 'type': 'list', 'children': [], 'value': '[]'},{'id': '71', 'type': 'while_statement', 'children': ['72', '75']},{'id': '72', 'type': 'comparison_operator', 'children': ['73', '74'], 'value': 'is'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '74', 'type': 'False', 'children': []},{'id': '75', 'type': 'block', 'children': ['76', '89', '99', '126', '134', '146']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'random'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'gammavariate'},{'id': '86', 'type': 'argument_list', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'beta'},{'id': '89', 'type': 'if_statement', 'children': ['90', '97']},{'id': '90', 'type': 'boolean_operator', 'children': ['91', '94'], 'value': 'or'},{'id': '91', 'type': 'comparison_operator', 'children': ['92', '93'], 'value': '<='},{'id': '92', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'min_length'},{'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': '>='},{'id': '95', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'max_length'},{'id': '97', 'type': 'block', 'children': ['98']},{'id': '98', 'type': 'continue_statement', 'children': []},{'id': '99', 'type': 'if_statement', 'children': ['100', '106', '115']},{'id': '100', 'type': 'comparison_operator', 'children': ['101', '105'], 'value': '<'},{'id': '101', 'type': 'call', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '103', 'type': 'argument_list', 'children': ['104']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '106', 'type': 'block', 'children': ['107']},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'assignment', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '110', 'type': 'subscript', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '112', 'type': 'slice', 'children': ['113', '114']},{'id': '113', 'type': 'integer', 'children': [], 'value': '0'},{'id': '114', 'type': 'colon', 'children': []},{'id': '115', 'type': 'else_clause', 'children': ['116']},{'id': '116', 'type': 'block', 'children': ['117']},{'id': '117', 'type': 'expression_statement', 'children': ['118']},{'id': '118', 'type': 'assignment', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '120', 'type': 'subscript', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '122', 'type': 'slice', 'children': ['123', '124', '125']},{'id': '123', 'type': 'integer', 'children': [], 'value': '0'},{'id': '124', 'type': 'colon', 'children': []},{'id': '125', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '129', 'type': 'subscript', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '131', 'type': 'slice', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '133', 'type': 'colon', 'children': []},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'call', 'children': ['136', '139']},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'shuffled'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '139', 'type': 'argument_list', 'children': ['140']},{'id': '140', 'type': 'call', 'children': ['141', '144']},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'string', 'children': [], 'value': "''"},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '146', 'type': 'if_statement', 'children': ['147', '150']},{'id': '147', 'type': 'comparison_operator', 'children': ['148', '149'], 'value': '=='},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '149', 'type': 'list', 'children': [], 'value': '[]'},{'id': '150', 'type': 'block', 'children': ['151']},{'id': '151', 'type': 'break_statement', 'children': []},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'call', 'children': ['154', '157']},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'random'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'shuffle'},{'id': '157', 'type': 'argument_list', 'children': ['158']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'shuffled'},{'id': '159', 'type': 'if_statement', 'children': ['160', '166', '171']},{'id': '160', 'type': 'comparison_operator', 'children': ['161', '162'], 'value': '=='},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'fraction'},{'id': '162', 'type': 'call', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '164', 'type': 'argument_list', 'children': ['165']},{'id': '165', 'type': 'integer', 'children': [], 'value': '100'},{'id': '166', 'type': 'block', 'children': ['167']},{'id': '167', 'type': 'expression_statement', 'children': ['168']},{'id': '168', 'type': 'assignment', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'subset'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'shuffled'},{'id': '171', 'type': 'else_clause', 'children': ['172']},{'id': '172', 'type': 'block', 'children': ['173', '184', '192']},{'id': '173', 'type': 'expression_statement', 'children': ['174']},{'id': '174', 'type': 'assignment', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'max_pieces'},{'id': '176', 'type': 'call', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '178', 'type': 'argument_list', 'children': ['179']},{'id': '179', 'type': 'binary_operator', 'children': ['180', '183'], 'value': '/'},{'id': '180', 'type': 'binary_operator', 'children': ['181', '182'], 'value': '*'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'fraction'},{'id': '183', 'type': 'integer', 'children': [], 'value': '100'},{'id': '184', 'type': 'expression_statement', 'children': ['185']},{'id': '185', 'type': 'assignment', 'children': ['186', '189']},{'id': '186', 'type': 'pattern_list', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'subset'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '189', 'type': 'expression_list', 'children': ['190', '191']},{'id': '190', 'type': 'list', 'children': [], 'value': '[]'},{'id': '191', 'type': 'integer', 'children': [], 'value': '0'},{'id': '192', 'type': 'for_statement', 'children': ['193', '194', '195']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'fragment'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'shuffled'},{'id': '195', 'type': 'block', 'children': ['196', '203']},{'id': '196', 'type': 'expression_statement', 'children': ['197']},{'id': '197', 'type': 'assignment', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '199', 'type': 'call', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '201', 'type': 'argument_list', 'children': ['202']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'fragment'},{'id': '203', 'type': 'if_statement', 'children': ['204', '209', '221']},{'id': '204', 'type': 'comparison_operator', 'children': ['205', '208'], 'value': '<='},{'id': '205', 'type': 'binary_operator', 'children': ['206', '207'], 'value': '+'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'max_pieces'},{'id': '209', 'type': 'block', 'children': ['210', '217']},{'id': '210', 'type': 'expression_statement', 'children': ['211']},{'id': '211', 'type': 'call', 'children': ['212', '215']},{'id': '212', 'type': 'attribute', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'subset'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '215', 'type': 'argument_list', 'children': ['216']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'fragment'},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'augmented_assignment', 'children': ['219', '220'], 'value': '+='},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '221', 'type': 'else_clause', 'children': ['222']},{'id': '222', 'type': 'block', 'children': ['223', '229', '241']},{'id': '223', 'type': 'expression_statement', 'children': ['224']},{'id': '224', 'type': 'assignment', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'diff'},{'id': '226', 'type': 'binary_operator', 'children': ['227', '228'], 'value': '-'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'max_pieces'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'call', 'children': ['231', '234']},{'id': '231', 'type': 'attribute', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'subset'},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '234', 'type': 'argument_list', 'children': ['235']},{'id': '235', 'type': 'subscript', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'fragment'},{'id': '237', 'type': 'slice', 'children': ['238', '239', '240']},{'id': '238', 'type': 'integer', 'children': [], 'value': '0'},{'id': '239', 'type': 'colon', 'children': []},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'diff'},{'id': '241', 'type': 'break_statement', 'children': []},{'id': '242', 'type': 'if_statement', 'children': ['243', '246', '257']},{'id': '243', 'type': 'comparison_operator', 'children': ['244', '245'], 'value': 'is'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '245', 'type': 'True', 'children': []},{'id': '246', 'type': 'block', 'children': ['247']},{'id': '247', 'type': 'expression_statement', 'children': ['248']},{'id': '248', 'type': 'yield', 'children': ['249']},{'id': '249', 'type': 'list', 'children': ['250', '251'], 'value': "[header, ''.join(subset)]"},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '251', 'type': 'call', 'children': ['252', '255']},{'id': '252', 'type': 'attribute', 'children': ['253', '254']},{'id': '253', 'type': 'string', 'children': [], 'value': "''"},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '255', 'type': 'argument_list', 'children': ['256']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'subset'},{'id': '257', 'type': 'else_clause', 'children': ['258']},{'id': '258', 'type': 'block', 'children': ['259']},{'id': '259', 'type': 'for_statement', 'children': ['260', '263', '267']},{'id': '260', 'type': 'pattern_list', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '263', 'type': 'call', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '265', 'type': 'argument_list', 'children': ['266']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'subset'},{'id': '267', 'type': 'block', 'children': ['268']},{'id': '268', 'type': 'expression_statement', 'children': ['269']},{'id': '269', 'type': 'yield', 'children': ['270']},{'id': '270', 'type': 'list', 'children': ['271', '276'], 'value': "['%s fragment:%s' % (header, i), seq]"},{'id': '271', 'type': 'binary_operator', 'children': ['272', '273'], 'value': '%'},{'id': '272', 'type': 'string', 'children': [], 'value': "'%s fragment:%s'"},{'id': '273', 'type': 'tuple', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'seq'} | def shuffle_genome(genome, cat, fraction = float(100), plot = True, \
alpha = 0.1, beta = 100000, \
min_length = 1000, max_length = 200000):
header = '>randomized_%s' % (genome.name)
sequence = list(''.join([i[1] for i in parse_fasta(genome)]))
length = len(sequence)
shuffled = []
while sequence is not False:
s = int(random.gammavariate(alpha, beta))
if s <= min_length or s >= max_length:
continue
if len(sequence) < s:
seq = sequence[0:]
else:
seq = sequence[0:s]
sequence = sequence[s:]
shuffled.append(''.join(seq))
if sequence == []:
break
random.shuffle(shuffled)
if fraction == float(100):
subset = shuffled
else:
max_pieces = int(length * fraction/100)
subset, total = [], 0
for fragment in shuffled:
length = len(fragment)
if total + length <= max_pieces:
subset.append(fragment)
total += length
else:
diff = max_pieces - total
subset.append(fragment[0:diff])
break
if cat is True:
yield [header, ''.join(subset)]
else:
for i, seq in enumerate(subset):
yield ['%s fragment:%s' % (header, i), seq] |
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'L'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '17', 'type': 'expression_list', 'children': ['18', '19']},{'id': '18', 'type': 'None', 'children': []},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'for_statement', 'children': ['21', '22', '23']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '23', 'type': 'block', 'children': ['24', '35', '47', '82', '97', '109', '126', '170', '258']},{'id': '24', 'type': 'if_statement', 'children': ['25', '33']},{'id': '25', 'type': 'comparison_operator', 'children': ['26', '32'], 'value': 'is'},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'string', 'children': [], 'value': "'@'"},{'id': '32', 'type': 'True', 'children': []},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'continue_statement', 'children': []},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '38', 'type': 'call', 'children': ['39', '46']},{'id': '39', 'type': 'attribute', 'children': ['40', '45']},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '44', 'type': 'argument_list', 'children': []},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '46', 'type': 'argument_list', 'children': []},{'id': '47', 'type': 'expression_statement', 'children': ['48']},{'id': '48', 'type': 'assignment', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '50', 'type': 'list_comprehension', 'children': ['51', '57', '58']},{'id': '51', 'type': 'conditional_expression', 'children': ['52', '53', '56'], 'value': 'if'},{'id': '52', 'type': 'True', 'children': []},{'id': '53', 'type': 'comparison_operator', 'children': ['54', '55'], 'value': '=='},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '55', 'type': 'string', 'children': [], 'value': "'1'"},{'id': '56', 'type': 'False', 'children': []},{'id': '57', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '58', 'type': 'for_in_clause', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '60', 'type': 'subscript', 'children': ['61', '77']},{'id': '61', 'type': 'subscript', 'children': ['62', '76']},{'id': '62', 'type': 'call', 'children': ['63', '74']},{'id': '63', 'type': 'attribute', 'children': ['64', '73']},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'bin'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'subscript', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '72', 'type': 'integer', 'children': [], 'value': '1'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '74', 'type': 'argument_list', 'children': ['75']},{'id': '75', 'type': 'string', 'children': [], 'value': "'b'"},{'id': '76', 'type': 'integer', 'children': [], 'value': '1'},{'id': '77', 'type': 'slice', 'children': ['78', '79', '80']},{'id': '78', 'type': 'colon', 'children': []},{'id': '79', 'type': 'colon', 'children': []},{'id': '80', 'type': 'unary_operator', 'children': ['81'], 'value': '-'},{'id': '81', 'type': 'integer', 'children': [], 'value': '1'},{'id': '82', 'type': 'while_statement', 'children': ['83', '89']},{'id': '83', 'type': 'comparison_operator', 'children': ['84', '88'], 'value': '<'},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '88', 'type': 'integer', 'children': [], 'value': '8'},{'id': '89', 'type': 'block', 'children': ['90']},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'False', 'children': []},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '108']},{'id': '99', 'type': 'pattern_list', 'children': ['100', '101', '102', '103', '104', '105', '106', '107']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'proper'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'na'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'nap'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'rev'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'mrev'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'left'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'right'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '109', 'type': 'if_statement', 'children': ['110', '113']},{'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': 'is'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '112', 'type': 'False', 'children': []},{'id': '113', 'type': 'block', 'children': ['114', '125']},{'id': '114', 'type': 'if_statement', 'children': ['115', '118']},{'id': '115', 'type': 'comparison_operator', 'children': ['116', '117'], 'value': 'is'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'singles'},{'id': '117', 'type': 'True', 'children': []},{'id': '118', 'type': 'block', 'children': ['119']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'print_single'},{'id': '122', 'type': 'argument_list', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'rev'},{'id': '125', 'type': 'continue_statement', 'children': []},{'id': '126', 'type': 'if_statement', 'children': ['127', '130', '156']},{'id': '127', 'type': 'comparison_operator', 'children': ['128', '129'], 'value': 'is'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'rev'},{'id': '129', 'type': 'True', 'children': []},{'id': '130', 'type': 'block', 'children': ['131', '144']},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'assignment', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '134', 'type': 'subscript', 'children': ['135', '143']},{'id': '135', 'type': 'call', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'rc'},{'id': '137', 'type': 'argument_list', 'children': ['138']},{'id': '138', 'type': 'list', 'children': ['139', '140'], 'value': "['', line[9]]"},{'id': '139', 'type': 'string', 'children': [], 'value': "''"},{'id': '140', 'type': 'subscript', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '142', 'type': 'integer', 'children': [], 'value': '9'},{'id': '143', 'type': 'integer', 'children': [], 'value': '1'},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'qual'},{'id': '147', 'type': 'subscript', 'children': ['148', '151']},{'id': '148', 'type': 'subscript', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '150', 'type': 'integer', 'children': [], 'value': '10'},{'id': '151', 'type': 'slice', 'children': ['152', '153', '154']},{'id': '152', 'type': 'colon', 'children': []},{'id': '153', 'type': 'colon', 'children': []},{'id': '154', 'type': 'unary_operator', 'children': ['155'], 'value': '-'},{'id': '155', 'type': 'integer', 'children': [], 'value': '1'},{'id': '156', 'type': 'else_clause', 'children': ['157']},{'id': '157', 'type': 'block', 'children': ['158', '164']},{'id': '158', 'type': 'expression_statement', 'children': ['159']},{'id': '159', 'type': 'assignment', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '161', 'type': 'subscript', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '163', 'type': 'integer', 'children': [], 'value': '9'},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'qual'},{'id': '167', 'type': 'subscript', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '169', 'type': 'integer', 'children': [], 'value': '10'},{'id': '170', 'type': 'if_statement', 'children': ['171', '174']},{'id': '171', 'type': 'comparison_operator', 'children': ['172', '173'], 'value': 'is'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'left'},{'id': '173', 'type': 'True', 'children': []},{'id': '174', 'type': 'block', 'children': ['175', '213', '223', '239']},{'id': '175', 'type': 'if_statement', 'children': ['176', '183']},{'id': '176', 'type': 'boolean_operator', 'children': ['177', '180'], 'value': 'and'},{'id': '177', 'type': 'comparison_operator', 'children': ['178', '179'], 'value': 'is'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '179', 'type': 'None', 'children': []},{'id': '180', 'type': 'comparison_operator', 'children': ['181', '182'], 'value': 'is'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'force'},{'id': '182', 'type': 'False', 'children': []},{'id': '183', 'type': 'block', 'children': ['184', '194', '209']},{'id': '184', 'type': 'expression_statement', 'children': ['185']},{'id': '185', 'type': 'call', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '187', 'type': 'argument_list', 'children': ['188', '189']},{'id': '188', 'type': 'string', 'children': [], 'value': "'sam file is not sorted'"},{'id': '189', 'type': 'keyword_argument', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '191', 'type': 'attribute', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'call', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '197', 'type': 'argument_list', 'children': ['198', '204']},{'id': '198', 'type': 'binary_operator', 'children': ['199', '200'], 'value': '%'},{'id': '199', 'type': 'string', 'children': [], 'value': "'\\te.g.: %s'"},{'id': '200', 'type': '()', 'children': ['201']},{'id': '201', 'type': 'subscript', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '203', 'type': 'integer', 'children': [], 'value': '0'},{'id': '204', 'type': 'keyword_argument', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '206', 'type': 'attribute', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '209', 'type': 'expression_statement', 'children': ['210']},{'id': '210', 'type': 'call', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '212', 'type': 'argument_list', 'children': []},{'id': '213', 'type': 'if_statement', 'children': ['214', '217']},{'id': '214', 'type': 'comparison_operator', 'children': ['215', '216'], 'value': 'is'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '216', 'type': 'None', 'children': []},{'id': '217', 'type': 'block', 'children': ['218', '222']},{'id': '218', 'type': 'expression_statement', 'children': ['219']},{'id': '219', 'type': 'assignment', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '221', 'type': 'None', 'children': []},{'id': '222', 'type': 'continue_statement', 'children': []},{'id': '223', 'type': 'expression_statement', 'children': ['224']},{'id': '224', 'type': 'assignment', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '226', 'type': 'list', 'children': ['227', '232', '233', '238'], 'value': "['@%s' % line[0], seq, '+%s' % line[0], qual]"},{'id': '227', 'type': 'binary_operator', 'children': ['228', '229'], 'value': '%'},{'id': '228', 'type': 'string', 'children': [], 'value': "'@%s'"},{'id': '229', 'type': 'subscript', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '231', 'type': 'integer', 'children': [], 'value': '0'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '233', 'type': 'binary_operator', 'children': ['234', '235'], 'value': '%'},{'id': '234', 'type': 'string', 'children': [], 'value': "'+%s'"},{'id': '235', 'type': 'subscript', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '237', 'type': 'integer', 'children': [], 'value': '0'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'qual'},{'id': '239', 'type': 'if_statement', 'children': ['240', '243']},{'id': '240', 'type': 'comparison_operator', 'children': ['241', '242'], 'value': 'is'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '242', 'type': 'None', 'children': []},{'id': '243', 'type': 'block', 'children': ['244', '247', '250']},{'id': '244', 'type': 'expression_statement', 'children': ['245']},{'id': '245', 'type': 'yield', 'children': ['246']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '247', 'type': 'expression_statement', 'children': ['248']},{'id': '248', 'type': 'yield', 'children': ['249']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '250', 'type': 'expression_statement', 'children': ['251']},{'id': '251', 'type': 'assignment', 'children': ['252', '255']},{'id': '252', 'type': 'pattern_list', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '255', 'type': 'expression_list', 'children': ['256', '257']},{'id': '256', 'type': 'None', 'children': []},{'id': '257', 'type': 'None', 'children': []},{'id': '258', 'type': 'if_statement', 'children': ['259', '262']},{'id': '259', 'type': 'comparison_operator', 'children': ['260', '261'], 'value': 'is'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'right'},{'id': '261', 'type': 'True', 'children': []},{'id': '262', 'type': 'block', 'children': ['263', '301', '311', '327']},{'id': '263', 'type': 'if_statement', 'children': ['264', '271']},{'id': '264', 'type': 'boolean_operator', 'children': ['265', '268'], 'value': 'and'},{'id': '265', 'type': 'comparison_operator', 'children': ['266', '267'], 'value': 'is'},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '267', 'type': 'None', 'children': []},{'id': '268', 'type': 'comparison_operator', 'children': ['269', '270'], 'value': 'is'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'force'},{'id': '270', 'type': 'False', 'children': []},{'id': '271', 'type': 'block', 'children': ['272', '282', '297']},{'id': '272', 'type': 'expression_statement', 'children': ['273']},{'id': '273', 'type': 'call', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '275', 'type': 'argument_list', 'children': ['276', '277']},{'id': '276', 'type': 'string', 'children': [], 'value': "'sam file is not sorted'"},{'id': '277', 'type': 'keyword_argument', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '279', 'type': 'attribute', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '282', 'type': 'expression_statement', 'children': ['283']},{'id': '283', 'type': 'call', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '285', 'type': 'argument_list', 'children': ['286', '292']},{'id': '286', 'type': 'binary_operator', 'children': ['287', '288'], 'value': '%'},{'id': '287', 'type': 'string', 'children': [], 'value': "'\\te.g.: %s'"},{'id': '288', 'type': '()', 'children': ['289']},{'id': '289', 'type': 'subscript', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '291', 'type': 'integer', 'children': [], 'value': '0'},{'id': '292', 'type': 'keyword_argument', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '294', 'type': 'attribute', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '297', 'type': 'expression_statement', 'children': ['298']},{'id': '298', 'type': 'call', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '300', 'type': 'argument_list', 'children': []},{'id': '301', 'type': 'if_statement', 'children': ['302', '305']},{'id': '302', 'type': 'comparison_operator', 'children': ['303', '304'], 'value': 'is'},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '304', 'type': 'None', 'children': []},{'id': '305', 'type': 'block', 'children': ['306', '310']},{'id': '306', 'type': 'expression_statement', 'children': ['307']},{'id': '307', 'type': 'assignment', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '309', 'type': 'None', 'children': []},{'id': '310', 'type': 'continue_statement', 'children': []},{'id': '311', 'type': 'expression_statement', 'children': ['312']},{'id': '312', 'type': 'assignment', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '314', 'type': 'list', 'children': ['315', '320', '321', '326'], 'value': "['@%s' % line[0], seq, '+%s' % line[0], qual]"},{'id': '315', 'type': 'binary_operator', 'children': ['316', '317'], 'value': '%'},{'id': '316', 'type': 'string', 'children': [], 'value': "'@%s'"},{'id': '317', 'type': 'subscript', 'children': ['318', '319']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '319', 'type': 'integer', 'children': [], 'value': '0'},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '321', 'type': 'binary_operator', 'children': ['322', '323'], 'value': '%'},{'id': '322', 'type': 'string', 'children': [], 'value': "'+%s'"},{'id': '323', 'type': 'subscript', 'children': ['324', '325']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '325', 'type': 'integer', 'children': [], 'value': '0'},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'qual'},{'id': '327', 'type': 'if_statement', 'children': ['328', '331']},{'id': '328', 'type': 'comparison_operator', 'children': ['329', '330'], 'value': 'is'},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '330', 'type': 'None', 'children': []},{'id': '331', 'type': 'block', 'children': ['332', '335', '338']},{'id': '332', 'type': 'expression_statement', 'children': ['333']},{'id': '333', 'type': 'yield', 'children': ['334']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '335', 'type': 'expression_statement', 'children': ['336']},{'id': '336', 'type': 'yield', 'children': ['337']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '338', 'type': 'expression_statement', 'children': ['339']},{'id': '339', 'type': 'assignment', 'children': ['340', '343']},{'id': '340', 'type': 'pattern_list', 'children': ['341', '342']},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '342', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '343', 'type': 'expression_list', 'children': ['344', '345']},{'id': '344', 'type': 'None', 'children': []},{'id': '345', 'type': 'None', 'children': []} | def sam2fastq(sam, singles = False, force = False):
L, R = None, None
for line in sam:
if line.startswith('@') is True:
continue
line = line.strip().split()
bit = [True if i == '1' else False \
for i in bin(int(line[1])).split('b')[1][::-1]]
while len(bit) < 8:
bit.append(False)
pair, proper, na, nap, rev, mrev, left, right = bit
if pair is False:
if singles is True:
print_single(line, rev)
continue
if rev is True:
seq = rc(['', line[9]])[1]
qual = line[10][::-1]
else:
seq = line[9]
qual = line[10]
if left is True:
if L is not None and force is False:
print('sam file is not sorted', file = sys.stderr)
print('\te.g.: %s' % (line[0]), file = sys.stderr)
exit()
if L is not None:
L = None
continue
L = ['@%s' % line[0], seq, '+%s' % line[0], qual]
if R is not None:
yield L
yield R
L, R = None, None
if right is True:
if R is not None and force is False:
print('sam file is not sorted', file = sys.stderr)
print('\te.g.: %s' % (line[0]), file = sys.stderr)
exit()
if R is not None:
R = None
continue
R = ['@%s' % line[0], seq, '+%s' % line[0], qual]
if L is not None:
yield L
yield R
L, R = None, None |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_sam'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '6', 'type': 'block', 'children': ['7', '29', '141']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'tempdir'},{'id': '10', 'type': 'binary_operator', 'children': ['11', '12'], 'value': '%'},{'id': '11', 'type': 'string', 'children': [], 'value': "'%s/'"},{'id': '12', 'type': '()', 'children': ['13']},{'id': '13', 'type': 'subscript', 'children': ['14', '28']},{'id': '14', 'type': 'call', 'children': ['15', '25']},{'id': '15', 'type': 'attribute', 'children': ['16', '24']},{'id': '16', 'type': 'call', 'children': ['17', '22']},{'id': '17', 'type': 'attribute', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'abspath'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '25', 'type': 'argument_list', 'children': ['26', '27']},{'id': '26', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '27', 'type': 'integer', 'children': [], 'value': '1'},{'id': '28', 'type': 'integer', 'children': [], 'value': '0'},{'id': '29', 'type': 'if_statement', 'children': ['30', '33', '119']},{'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': 'is'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '32', 'type': 'True', 'children': []},{'id': '33', 'type': 'block', 'children': ['34', '49', '112']},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '37', 'type': 'binary_operator', 'children': ['38', '39'], 'value': '%'},{'id': '38', 'type': 'string', 'children': [], 'value': "'%s.sorted.sam'"},{'id': '39', 'type': '()', 'children': ['40']},{'id': '40', 'type': 'subscript', 'children': ['41', '48']},{'id': '41', 'type': 'call', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '45', 'type': 'argument_list', 'children': ['46', '47']},{'id': '46', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '47', 'type': 'integer', 'children': [], 'value': '1'},{'id': '48', 'type': 'integer', 'children': [], 'value': '0'},{'id': '49', 'type': 'if_statement', 'children': ['50', '53', '79']},{'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': '!='},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '52', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '53', 'type': 'block', 'children': ['54']},{'id': '54', 'type': 'if_statement', 'children': ['55', '65']},{'id': '55', 'type': 'comparison_operator', 'children': ['56', '64'], 'value': 'is'},{'id': '56', 'type': 'call', 'children': ['57', '62']},{'id': '57', 'type': 'attribute', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'exists'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '64', 'type': 'False', 'children': []},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'system'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '%'},{'id': '73', 'type': 'string', 'children': [], 'value': '"\\\n sort -k1 --buffer-size=%sG -T %s -o %s %s\\\n "'},{'id': '74', 'type': 'tuple', 'children': ['75', '76', '77', '78']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'sbuffer'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'tempdir'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '79', 'type': 'else_clause', 'children': ['80']},{'id': '80', 'type': 'block', 'children': ['81', '85', '106']},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'assignment', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '84', 'type': 'string', 'children': [], 'value': "'stdin-sam.sorted.sam'"},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '88', 'type': 'call', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'Popen'},{'id': '90', 'type': 'argument_list', 'children': ['91', '98', '103']},{'id': '91', 'type': 'binary_operator', 'children': ['92', '93', '94'], 'value': '%'},{'id': '92', 'type': 'string', 'children': [], 'value': '"sort -k1 --buffer-size=%sG -T %s -o %s"'},{'id': '93', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '94', 'type': 'tuple', 'children': ['95', '96', '97']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'sbuffer'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'tempdir'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '98', 'type': 'keyword_argument', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'stdin'},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'stdin'},{'id': '103', 'type': 'keyword_argument', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'shell'},{'id': '105', 'type': 'True', 'children': []},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'call', 'children': ['108', '111']},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'communicate'},{'id': '111', 'type': 'argument_list', 'children': []},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '115', 'type': 'call', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '117', 'type': 'argument_list', 'children': ['118']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '119', 'type': 'else_clause', 'children': ['120']},{'id': '120', 'type': 'block', 'children': ['121']},{'id': '121', 'type': 'if_statement', 'children': ['122', '125', '132']},{'id': '122', 'type': 'comparison_operator', 'children': ['123', '124'], 'value': '=='},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '124', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '125', 'type': 'block', 'children': ['126']},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'stdin'},{'id': '132', 'type': 'else_clause', 'children': ['133']},{'id': '133', 'type': 'block', 'children': ['134']},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '137', 'type': 'call', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '139', 'type': 'argument_list', 'children': ['140']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '141', 'type': 'return_statement', 'children': ['142']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'mapping'} | def sort_sam(sam, sort):
tempdir = '%s/' % (os.path.abspath(sam).rsplit('/', 1)[0])
if sort is True:
mapping = '%s.sorted.sam' % (sam.rsplit('.', 1)[0])
if sam != '-':
if os.path.exists(mapping) is False:
os.system("\
sort -k1 --buffer-size=%sG -T %s -o %s %s\
" % (sbuffer, tempdir, mapping, sam))
else:
mapping = 'stdin-sam.sorted.sam'
p = Popen("sort -k1 --buffer-size=%sG -T %s -o %s" \
% (sbuffer, tempdir, mapping), stdin = sys.stdin, shell = True)
p.communicate()
mapping = open(mapping)
else:
if sam == '-':
mapping = sys.stdin
else:
mapping = open(sam)
return mapping |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'crossmap'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'fas'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'reads'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'no_shrink'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'keepDB'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'threads'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'cluster'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'nodes'},{'id': '12', 'type': 'block', 'children': ['13', '22', '26', '213']},{'id': '13', 'type': 'if_statement', 'children': ['14', '17']},{'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': 'is'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'cluster'},{'id': '16', 'type': 'True', 'children': []},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'threads'},{'id': '21', 'type': 'string', 'children': [], 'value': "'48'"},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'btc'},{'id': '25', 'type': 'list', 'children': [], 'value': '[]'},{'id': '26', 'type': 'for_statement', 'children': ['27', '28', '29']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'fa'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'fas'},{'id': '29', 'type': 'block', 'children': ['30', '38', '45']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'btd'},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'bowtiedb'},{'id': '35', 'type': 'argument_list', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'fa'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'keepDB'},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '44']},{'id': '40', 'type': 'pattern_list', 'children': ['41', '42', '43']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'U'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'reads'},{'id': '45', 'type': 'if_statement', 'children': ['46', '49', '142']},{'id': '46', 'type': 'comparison_operator', 'children': ['47', '48'], 'value': 'is'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '48', 'type': 'False', 'children': []},{'id': '49', 'type': 'block', 'children': ['50', '59']},{'id': '50', 'type': 'if_statement', 'children': ['51', '54']},{'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': 'is'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'U'},{'id': '53', 'type': 'False', 'children': []},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '58', 'type': 'False', 'children': []},{'id': '59', 'type': 'for_statement', 'children': ['60', '63', '67']},{'id': '60', 'type': 'pattern_list', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '67', 'type': 'block', 'children': ['68', '74', '85', '125']},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '71', 'type': 'subscript', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '74', 'type': 'if_statement', 'children': ['75', '78']},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '77'], 'value': 'is'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'U'},{'id': '77', 'type': 'False', 'children': []},{'id': '78', 'type': 'block', 'children': ['79']},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '82', 'type': 'subscript', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'U'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '88', 'type': 'binary_operator', 'children': ['89', '90'], 'value': '%'},{'id': '89', 'type': 'string', 'children': [], 'value': "'%s/%s-vs-%s'"},{'id': '90', 'type': 'tuple', 'children': ['91', '96', '97', '107']},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'getcwd'},{'id': '95', 'type': 'argument_list', 'children': []},{'id': '96', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '97', 'type': 'subscript', 'children': ['98', '105']},{'id': '98', 'type': 'call', 'children': ['99', '102']},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'fa'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '102', 'type': 'argument_list', 'children': ['103', '104']},{'id': '103', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '104', 'type': 'integer', 'children': [], 'value': '1'},{'id': '105', 'type': 'unary_operator', 'children': ['106'], 'value': '-'},{'id': '106', 'type': 'integer', 'children': [], 'value': '1'},{'id': '107', 'type': 'subscript', 'children': ['108', '124']},{'id': '108', 'type': 'call', 'children': ['109', '121']},{'id': '109', 'type': 'attribute', 'children': ['110', '120']},{'id': '110', 'type': 'subscript', 'children': ['111', '118']},{'id': '111', 'type': 'call', 'children': ['112', '115']},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '115', 'type': 'argument_list', 'children': ['116', '117']},{'id': '116', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '117', 'type': 'integer', 'children': [], 'value': '1'},{'id': '118', 'type': 'unary_operator', 'children': ['119'], 'value': '-'},{'id': '119', 'type': 'integer', 'children': [], 'value': '1'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '121', 'type': 'argument_list', 'children': ['122', '123']},{'id': '122', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '123', 'type': 'integer', 'children': [], 'value': '3'},{'id': '124', 'type': 'integer', 'children': [], 'value': '0'},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'btc'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'bowtie'},{'id': '133', 'type': 'argument_list', 'children': ['134', '135', '136', '137', '138', '139', '140', '141']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'btd'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'no_shrink'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'threads'},{'id': '142', 'type': 'else_clause', 'children': ['143']},{'id': '143', 'type': 'block', 'children': ['144', '148', '152']},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '147', 'type': 'False', 'children': []},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'assignment', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '151', 'type': 'False', 'children': []},{'id': '152', 'type': 'for_statement', 'children': ['153', '154', '155']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'U'},{'id': '155', 'type': 'block', 'children': ['156', '196']},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'assignment', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '159', 'type': 'binary_operator', 'children': ['160', '161'], 'value': '%'},{'id': '160', 'type': 'string', 'children': [], 'value': "'%s/%s-vs-%s'"},{'id': '161', 'type': 'tuple', 'children': ['162', '167', '168', '178']},{'id': '162', 'type': 'call', 'children': ['163', '166']},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'getcwd'},{'id': '166', 'type': 'argument_list', 'children': []},{'id': '167', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '168', 'type': 'subscript', 'children': ['169', '176']},{'id': '169', 'type': 'call', 'children': ['170', '173']},{'id': '170', 'type': 'attribute', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'fa'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '173', 'type': 'argument_list', 'children': ['174', '175']},{'id': '174', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '175', 'type': 'integer', 'children': [], 'value': '1'},{'id': '176', 'type': 'unary_operator', 'children': ['177'], 'value': '-'},{'id': '177', 'type': 'integer', 'children': [], 'value': '1'},{'id': '178', 'type': 'subscript', 'children': ['179', '195']},{'id': '179', 'type': 'call', 'children': ['180', '192']},{'id': '180', 'type': 'attribute', 'children': ['181', '191']},{'id': '181', 'type': 'subscript', 'children': ['182', '189']},{'id': '182', 'type': 'call', 'children': ['183', '186']},{'id': '183', 'type': 'attribute', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '186', 'type': 'argument_list', 'children': ['187', '188']},{'id': '187', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '188', 'type': 'integer', 'children': [], 'value': '1'},{'id': '189', 'type': 'unary_operator', 'children': ['190'], 'value': '-'},{'id': '190', 'type': 'integer', 'children': [], 'value': '1'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '192', 'type': 'argument_list', 'children': ['193', '194']},{'id': '193', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '194', 'type': 'integer', 'children': [], 'value': '3'},{'id': '195', 'type': 'integer', 'children': [], 'value': '0'},{'id': '196', 'type': 'expression_statement', 'children': ['197']},{'id': '197', 'type': 'call', 'children': ['198', '201']},{'id': '198', 'type': 'attribute', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'btc'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '201', 'type': 'argument_list', 'children': ['202']},{'id': '202', 'type': 'call', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'bowtie'},{'id': '204', 'type': 'argument_list', 'children': ['205', '206', '207', '208', '209', '210', '211', '212']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'sam'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'btd'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'no_shrink'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'threads'},{'id': '213', 'type': 'if_statement', 'children': ['214', '217', '240']},{'id': '214', 'type': 'comparison_operator', 'children': ['215', '216'], 'value': 'is'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'cluster'},{'id': '216', 'type': 'False', 'children': []},{'id': '217', 'type': 'block', 'children': ['218']},{'id': '218', 'type': 'for_statement', 'children': ['219', '220', '221']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'btc'},{'id': '221', 'type': 'block', 'children': ['222', '234']},{'id': '222', 'type': 'expression_statement', 'children': ['223']},{'id': '223', 'type': 'assignment', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '225', 'type': 'call', 'children': ['226', '229']},{'id': '226', 'type': 'attribute', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'Popen'},{'id': '229', 'type': 'argument_list', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '231', 'type': 'keyword_argument', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'shell'},{'id': '233', 'type': 'True', 'children': []},{'id': '234', 'type': 'expression_statement', 'children': ['235']},{'id': '235', 'type': 'call', 'children': ['236', '239']},{'id': '236', 'type': 'attribute', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'communicate'},{'id': '239', 'type': 'argument_list', 'children': []},{'id': '240', 'type': 'else_clause', 'children': ['241']},{'id': '241', 'type': 'block', 'children': ['242', '273']},{'id': '242', 'type': 'expression_statement', 'children': ['243']},{'id': '243', 'type': 'assignment', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '245', 'type': 'call', 'children': ['246', '249']},{'id': '246', 'type': 'attribute', 'children': ['247', '248']},{'id': '247', 'type': 'string', 'children': [], 'value': "''"},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '249', 'type': 'generator_expression', 'children': ['250', '267']},{'id': '250', 'type': 'call', 'children': ['251', '254']},{'id': '251', 'type': 'attribute', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'random'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'choice'},{'id': '254', 'type': 'argument_list', 'children': ['255']},{'id': '255', 'type': 'list_comprehension', 'children': ['256', '260']},{'id': '256', 'type': 'call', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '258', 'type': 'argument_list', 'children': ['259']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '260', 'type': 'for_in_clause', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '262', 'type': 'call', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '264', 'type': 'argument_list', 'children': ['265', '266']},{'id': '265', 'type': 'integer', 'children': [], 'value': '0'},{'id': '266', 'type': 'integer', 'children': [], 'value': '9'},{'id': '267', 'type': 'for_in_clause', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '269', 'type': 'call', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '271', 'type': 'argument_list', 'children': ['272']},{'id': '272', 'type': 'integer', 'children': [], 'value': '5'},{'id': '273', 'type': 'for_statement', 'children': ['274', '277', '286']},{'id': '274', 'type': 'pattern_list', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '277', 'type': 'call', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '279', 'type': 'argument_list', 'children': ['280', '285']},{'id': '280', 'type': 'call', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'chunks'},{'id': '282', 'type': 'argument_list', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'btc'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'nodes'},{'id': '285', 'type': 'integer', 'children': [], 'value': '1'},{'id': '286', 'type': 'block', 'children': ['287', '304', '317', '323', '342']},{'id': '287', 'type': 'expression_statement', 'children': ['288']},{'id': '288', 'type': 'assignment', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'bs'},{'id': '290', 'type': 'call', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '292', 'type': 'argument_list', 'children': ['293', '303']},{'id': '293', 'type': 'binary_operator', 'children': ['294', '295'], 'value': '%'},{'id': '294', 'type': 'string', 'children': [], 'value': "'%s/crossmap-qsub.%s.%s.sh'"},{'id': '295', 'type': 'tuple', 'children': ['296', '301', '302']},{'id': '296', 'type': 'call', 'children': ['297', '300']},{'id': '297', 'type': 'attribute', 'children': ['298', '299']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'getcwd'},{'id': '300', 'type': 'argument_list', 'children': []},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '303', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '304', 'type': 'expression_statement', 'children': ['305']},{'id': '305', 'type': 'call', 'children': ['306', '307']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '307', 'type': 'argument_list', 'children': ['308', '314']},{'id': '308', 'type': 'call', 'children': ['309', '312']},{'id': '309', 'type': 'attribute', 'children': ['310', '311']},{'id': '310', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '312', 'type': 'argument_list', 'children': ['313']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'commands'},{'id': '314', 'type': 'keyword_argument', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'bs'},{'id': '317', 'type': 'expression_statement', 'children': ['318']},{'id': '318', 'type': 'call', 'children': ['319', '322']},{'id': '319', 'type': 'attribute', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'bs'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '322', 'type': 'argument_list', 'children': []},{'id': '323', 'type': 'expression_statement', 'children': ['324']},{'id': '324', 'type': 'assignment', 'children': ['325', '326']},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '326', 'type': 'call', 'children': ['327', '330']},{'id': '327', 'type': 'attribute', 'children': ['328', '329']},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'Popen'},{'id': '330', 'type': 'argument_list', 'children': ['331', '338', '339']},{'id': '331', 'type': 'binary_operator', 'children': ['332', '333', '334'], 'value': '%'},{'id': '332', 'type': 'string', 'children': [], 'value': "'qsub -V -N crossmap %s'"},{'id': '333', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '334', 'type': '()', 'children': ['335']},{'id': '335', 'type': 'attribute', 'children': ['336', '337']},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'bs'},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '338', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '339', 'type': 'keyword_argument', 'children': ['340', '341']},{'id': '340', 'type': 'identifier', 'children': [], 'value': 'shell'},{'id': '341', 'type': 'True', 'children': []},{'id': '342', 'type': 'expression_statement', 'children': ['343']},{'id': '343', 'type': 'call', 'children': ['344', '347']},{'id': '344', 'type': 'attribute', 'children': ['345', '346']},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'communicate'},{'id': '347', 'type': 'argument_list', 'children': []} | def crossmap(fas, reads, options, no_shrink, keepDB, threads, cluster, nodes):
if cluster is True:
threads = '48'
btc = []
for fa in fas:
btd = bowtiedb(fa, keepDB)
F, R, U = reads
if F is not False:
if U is False:
u = False
for i, f in enumerate(F):
r = R[i]
if U is not False:
u = U[i]
sam = '%s/%s-vs-%s' % (os.getcwd(), \
fa.rsplit('/', 1)[-1], f.rsplit('/', 1)[-1].rsplit('.', 3)[0])
btc.append(bowtie(sam, btd, f, r, u, options, no_shrink, threads))
else:
f = False
r = False
for u in U:
sam = '%s/%s-vs-%s' % (os.getcwd(), \
fa.rsplit('/', 1)[-1], u.rsplit('/', 1)[-1].rsplit('.', 3)[0])
btc.append(bowtie(sam, btd, f, r, u, options, no_shrink, threads))
if cluster is False:
for i in btc:
p = subprocess.Popen(i, shell = True)
p.communicate()
else:
ID = ''.join(random.choice([str(i) for i in range(0, 9)]) for _ in range(5))
for node, commands in enumerate(chunks(btc, nodes), 1):
bs = open('%s/crossmap-qsub.%s.%s.sh' % (os.getcwd(), ID, node), 'w')
print('\n'.join(commands), file=bs)
bs.close()
p = subprocess.Popen(\
'qsub -V -N crossmap %s' \
% (bs.name), \
shell = True)
p.communicate() |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'bit_by_bit'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'in_data'},{'id': '6', 'type': 'block', 'children': ['7', '25', '31', '97', '135', '152']},{'id': '7', 'type': 'if_statement', 'children': ['8', '13']},{'id': '8', 'type': 'call', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '10', 'type': 'argument_list', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'in_data'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '13', 'type': 'block', 'children': ['14']},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'in_data'},{'id': '17', 'type': 'list_comprehension', 'children': ['18', '22']},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'ord'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '22', 'type': 'for_in_clause', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'in_data'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'NonDirectInit'},{'id': '31', 'type': 'for_statement', 'children': ['32', '33', '34']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'octet'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'in_data'},{'id': '34', 'type': 'block', 'children': ['35', '50']},{'id': '35', 'type': 'if_statement', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'ReflectIn'},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'octet'},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'reflect'},{'id': '47', 'type': 'argument_list', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'octet'},{'id': '49', 'type': 'integer', 'children': [], 'value': '8'},{'id': '50', 'type': 'for_statement', 'children': ['51', '52', '56']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'integer', 'children': [], 'value': '8'},{'id': '56', 'type': 'block', 'children': ['57', '65', '88']},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'topbit'},{'id': '60', 'type': 'binary_operator', 'children': ['61', '62'], 'value': '&'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'MSB_Mask'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '68', 'type': 'binary_operator', 'children': ['69', '78'], 'value': '|'},{'id': '69', 'type': '()', 'children': ['70']},{'id': '70', 'type': 'binary_operator', 'children': ['71', '75'], 'value': '&'},{'id': '71', 'type': '()', 'children': ['72']},{'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '<<'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '74', 'type': 'integer', 'children': [], 'value': '1'},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'Mask'},{'id': '78', 'type': '()', 'children': ['79']},{'id': '79', 'type': 'binary_operator', 'children': ['80', '87'], 'value': '&'},{'id': '80', 'type': '()', 'children': ['81']},{'id': '81', 'type': 'binary_operator', 'children': ['82', '83'], 'value': '>>'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'octet'},{'id': '83', 'type': '()', 'children': ['84']},{'id': '84', 'type': 'binary_operator', 'children': ['85', '86'], 'value': '-'},{'id': '85', 'type': 'integer', 'children': [], 'value': '7'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '87', 'type': 'integer', 'children': [], 'value': '0x01'},{'id': '88', 'type': 'if_statement', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'topbit'},{'id': '90', 'type': 'block', 'children': ['91']},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'augmented_assignment', 'children': ['93', '94'], 'value': '^='},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'Poly'},{'id': '97', 'type': 'for_statement', 'children': ['98', '99', '105']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'Width'},{'id': '105', 'type': 'block', 'children': ['106', '114', '126']},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'assignment', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'topbit'},{'id': '109', 'type': 'binary_operator', 'children': ['110', '111'], 'value': '&'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'MSB_Mask'},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'assignment', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '117', 'type': '()', 'children': ['118']},{'id': '118', 'type': 'binary_operator', 'children': ['119', '123'], 'value': '&'},{'id': '119', 'type': '()', 'children': ['120']},{'id': '120', 'type': 'binary_operator', 'children': ['121', '122'], 'value': '<<'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '122', 'type': 'integer', 'children': [], 'value': '1'},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'Mask'},{'id': '126', 'type': 'if_statement', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'topbit'},{'id': '128', 'type': 'block', 'children': ['129']},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'augmented_assignment', 'children': ['131', '132'], 'value': '^='},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'Poly'},{'id': '135', 'type': 'if_statement', 'children': ['136', '139']},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'ReflectOut'},{'id': '139', 'type': 'block', 'children': ['140']},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '143', 'type': 'call', 'children': ['144', '147']},{'id': '144', 'type': 'attribute', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'reflect'},{'id': '147', 'type': 'argument_list', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '149', 'type': 'attribute', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'Width'},{'id': '152', 'type': 'return_statement', 'children': ['153']},{'id': '153', 'type': 'binary_operator', 'children': ['154', '155'], 'value': '^'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'XorOut'} | def bit_by_bit(self, in_data):
if isinstance(in_data, str):
in_data = [ord(c) for c in in_data]
register = self.NonDirectInit
for octet in in_data:
if self.ReflectIn:
octet = self.reflect(octet, 8)
for i in range(8):
topbit = register & self.MSB_Mask
register = ((register << 1) & self.Mask) | ((octet >> (7 - i)) & 0x01)
if topbit:
register ^= self.Poly
for i in range(self.Width):
topbit = register & self.MSB_Mask
register = ((register << 1) & self.Mask)
if topbit:
register ^= self.Poly
if self.ReflectOut:
register = self.reflect(register, self.Width)
return register ^ self.XorOut |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_ggKbase_tables'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'tables'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'id_type'},{'id': '6', 'type': 'block', 'children': ['7', '11', '232']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'g2info'},{'id': '10', 'type': 'dictionary', 'children': []},{'id': '11', 'type': 'for_statement', 'children': ['12', '13', '14']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'tables'},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'for_statement', 'children': ['16', '17', '21']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '21', 'type': 'block', 'children': ['22', '35', '62', '76', '87']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '25', 'type': 'call', 'children': ['26', '33']},{'id': '26', 'type': 'attribute', 'children': ['27', '32']},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '31', 'type': 'argument_list', 'children': []},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '35', 'type': 'if_statement', 'children': ['36', '44']},{'id': '36', 'type': 'call', 'children': ['37', '42']},{'id': '37', 'type': 'attribute', 'children': ['38', '41']},{'id': '38', 'type': 'subscript', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '40', 'type': 'integer', 'children': [], 'value': '0'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '44', 'type': 'block', 'children': ['45', '49', '55', '61']},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '54']},{'id': '51', 'type': 'subscript', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '53', 'type': 'integer', 'children': [], 'value': '4'},{'id': '54', 'type': 'string', 'children': [], 'value': "'genome size (bp)'"},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '60']},{'id': '57', 'type': 'subscript', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '59', 'type': 'integer', 'children': [], 'value': '12'},{'id': '60', 'type': 'string', 'children': [], 'value': "'\n header[13] = '"},{'id': '61', 'type': 'continue_statement', 'children': []},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'assignment', 'children': ['64', '68']},{'id': '64', 'type': 'pattern_list', 'children': ['65', '66', '67']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '68', 'type': 'expression_list', 'children': ['69', '72', '75']},{'id': '69', 'type': 'subscript', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '71', 'type': 'integer', 'children': [], 'value': '0'},{'id': '72', 'type': 'subscript', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '74', 'type': 'integer', 'children': [], 'value': '1'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '79', 'type': 'list_comprehension', 'children': ['80', '84']},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'to_int'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '84', 'type': 'for_in_clause', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '87', 'type': 'if_statement', 'children': ['88', '91', '167']},{'id': '88', 'type': 'comparison_operator', 'children': ['89', '90'], 'value': 'is'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'id_type'},{'id': '90', 'type': 'False', 'children': []},{'id': '91', 'type': 'block', 'children': ['92', '105', '144']},{'id': '92', 'type': 'if_statement', 'children': ['93', '100']},{'id': '93', 'type': 'boolean_operator', 'children': ['94', '97'], 'value': 'or'},{'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': 'in'},{'id': '95', 'type': 'string', 'children': [], 'value': "'UNK'"},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '97', 'type': 'comparison_operator', 'children': ['98', '99'], 'value': 'in'},{'id': '98', 'type': 'string', 'children': [], 'value': "'unknown'"},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '100', 'type': 'block', 'children': ['101']},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'assignment', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '105', 'type': 'if_statement', 'children': ['106', '117', '143']},{'id': '106', 'type': 'boolean_operator', 'children': ['107', '111'], 'value': 'and'},{'id': '107', 'type': '()', 'children': ['108']},{'id': '108', 'type': 'comparison_operator', 'children': ['109', '110'], 'value': '!='},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '111', 'type': '()', 'children': ['112']},{'id': '112', 'type': 'boolean_operator', 'children': ['113', '114'], 'value': 'and'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '114', 'type': 'comparison_operator', 'children': ['115', '116'], 'value': 'in'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'g2info'},{'id': '117', 'type': 'ERROR', 'children': ['118', '123', '130']},{'id': '118', 'type': 'call', 'children': ['119', '120', '122']},{'id': '119', 'type': 'string', 'children': [], 'value': "'\n print('"},{'id': '120', 'type': 'ERROR', 'children': ['121']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '122', 'type': 'argument_list', 'children': []},{'id': '123', 'type': 'ERROR', 'children': ['124', '127']},{'id': '124', 'type': 'comparison_operator', 'children': ['125', '126'], 'value': 'not'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'g2info'},{'id': '127', 'type': 'subscript', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'g2info'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '130', 'type': 'dictionary_comprehension', 'children': ['131', '134']},{'id': '131', 'type': 'pair', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'stat'},{'id': '134', 'type': 'for_in_clause', 'children': ['135', '138']},{'id': '135', 'type': 'pattern_list', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'stat'},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '140', 'type': 'argument_list', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '143', 'type': 'block', 'children': [], 'value': ''},{'id': '144', 'type': 'if_statement', 'children': ['145', '148']},{'id': '145', 'type': 'comparison_operator', 'children': ['146', '147'], 'value': 'not'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'g2info'},{'id': '148', 'type': 'block', 'children': ['149']},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'assignment', 'children': ['151', '154']},{'id': '151', 'type': 'subscript', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'g2info'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '154', 'type': 'dictionary_comprehension', 'children': ['155', '158']},{'id': '155', 'type': 'pair', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'stat'},{'id': '158', 'type': 'for_in_clause', 'children': ['159', '162']},{'id': '159', 'type': 'pattern_list', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'stat'},{'id': '162', 'type': 'call', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '164', 'type': 'argument_list', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '167', 'type': 'else_clause', 'children': ['168']},{'id': '168', 'type': 'block', 'children': ['169']},{'id': '169', 'type': 'if_statement', 'children': ['170', '173', '178', '187']},{'id': '170', 'type': 'comparison_operator', 'children': ['171', '172'], 'value': '=='},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'id_type'},{'id': '172', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '173', 'type': 'block', 'children': ['174']},{'id': '174', 'type': 'expression_statement', 'children': ['175']},{'id': '175', 'type': 'assignment', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '178', 'type': 'elif_clause', 'children': ['179', '182']},{'id': '179', 'type': 'comparison_operator', 'children': ['180', '181'], 'value': '=='},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'id_type'},{'id': '181', 'type': 'string', 'children': [], 'value': "'code'"},{'id': '182', 'type': 'block', 'children': ['183']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'assignment', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '187', 'type': 'else_clause', 'children': ['188', '231']},{'id': '188', 'type': 'ERROR', 'children': ['189', '204', '217', '230']},{'id': '189', 'type': 'ERROR', 'children': ['190', '193', '194', '201']},{'id': '190', 'type': 'call', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '192', 'type': 'argument_list', 'children': []},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '194', 'type': 'call', 'children': ['195', '198']},{'id': '195', 'type': 'attribute', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '198', 'type': 'argument_list', 'children': ['199', '200']},{'id': '199', 'type': 'string', 'children': [], 'value': "' '"},{'id': '200', 'type': 'string', 'children': [], 'value': "''"},{'id': '201', 'type': 'subscript', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'g2info'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '204', 'type': 'dictionary_comprehension', 'children': ['205', '208']},{'id': '205', 'type': 'pair', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'stat'},{'id': '208', 'type': 'for_in_clause', 'children': ['209', '212']},{'id': '209', 'type': 'pattern_list', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'stat'},{'id': '212', 'type': 'call', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '214', 'type': 'argument_list', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '217', 'type': 'ERROR', 'children': ['218', '225']},{'id': '218', 'type': 'comparison_operator', 'children': ['219', '224'], 'value': '=='},{'id': '219', 'type': 'subscript', 'children': ['220', '223']},{'id': '220', 'type': 'subscript', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'g2info'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '223', 'type': 'string', 'children': [], 'value': "'genome size (bp)'"},{'id': '224', 'type': 'string', 'children': [], 'value': "''"},{'id': '225', 'type': 'subscript', 'children': ['226', '229']},{'id': '226', 'type': 'subscript', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'g2info'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '229', 'type': 'string', 'children': [], 'value': "'genome size (bp)'"},{'id': '230', 'type': 'integer', 'children': [], 'value': '0'},{'id': '231', 'type': 'block', 'children': [], 'value': ''},{'id': '232', 'type': 'return_statement', 'children': ['233']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'g2info'} | def parse_ggKbase_tables(tables, id_type):
g2info = {}
for table in tables:
for line in open(table):
line = line.strip().split('\t')
if line[0].startswith('name'):
header = line
header[4] = 'genome size (bp)'
header[12] = '
header[13] = '
continue
name, code, info = line[0], line[1], line
info = [to_int(i) for i in info]
if id_type is False:
if 'UNK' in code or 'unknown' in code:
code = name
if (name != code) and (name and code in g2info):
print('
print('
exit()
if name not in g2info:
g2info[name] = {item:stat for item, stat in zip(header, info)}
if code not in g2info:
g2info[code] = {item:stat for item, stat in zip(header, info)}
else:
if id_type == 'name':
ID = name
elif id_type == 'code':
ID = code
else:
print('
exit()
ID = ID.replace(' ', '')
g2info[ID] = {item:stat for item, stat in zip(header, info)}
if g2info[ID]['genome size (bp)'] == '':
g2info[ID]['genome size (bp)'] = 0
return g2info |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'top_hits'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'num'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '8', 'type': 'block', 'children': ['9', '24']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'call', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '14', 'type': 'argument_list', 'children': ['15', '21']},{'id': '15', 'type': 'keyword_argument', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'itemgetter'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '24', 'type': 'for_statement', 'children': ['25', '26', '32']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'hit'},{'id': '26', 'type': 'subscript', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '28', 'type': 'slice', 'children': ['29', '30', '31']},{'id': '29', 'type': 'integer', 'children': [], 'value': '0'},{'id': '30', 'type': 'colon', 'children': []},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'num'},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'yield', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'hit'} | def top_hits(hits, num, column, reverse):
hits.sort(key = itemgetter(column), reverse = reverse)
for hit in hits[0:num]:
yield hit |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'numBlast_sort'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'blast'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'numHits'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'evalueT'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'bitT'},{'id': '8', 'type': 'block', 'children': ['9', '32', '35', '45', '136', '145']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '12', 'type': 'list', 'children': ['13', '30'], 'value': "['\n 'qstart', 'qend', 'tstart', 'tend', 'evalue', 'bitscore']"},{'id': '13', 'type': 'concatenated_string', 'children': ['14', '15', '17', '18', '20', '21', '23', '24', '26', '27', '29']},{'id': '14', 'type': 'string', 'children': [], 'value': "'\n '"},{'id': '15', 'type': 'ERROR', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'qstart'},{'id': '17', 'type': 'string', 'children': [], 'value': "', '"},{'id': '18', 'type': 'ERROR', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'qend'},{'id': '20', 'type': 'string', 'children': [], 'value': "', '"},{'id': '21', 'type': 'ERROR', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'tstart'},{'id': '23', 'type': 'string', 'children': [], 'value': "', '"},{'id': '24', 'type': 'ERROR', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'tend'},{'id': '26', 'type': 'string', 'children': [], 'value': "', '"},{'id': '27', 'type': 'ERROR', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'evalue'},{'id': '29', 'type': 'string', 'children': [], 'value': "', '"},{'id': '30', 'type': 'ERROR', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'bitscore'},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'yield', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'hmm'},{'id': '38', 'type': 'dictionary_comprehension', 'children': ['39', '42']},{'id': '39', 'type': 'pair', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '41', 'type': 'list', 'children': [], 'value': '[]'},{'id': '42', 'type': 'for_in_clause', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '45', 'type': 'for_statement', 'children': ['46', '47', '48']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'blast'},{'id': '48', 'type': 'block', 'children': ['49', '107', '117']},{'id': '49', 'type': 'if_statement', 'children': ['50', '53', '105']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '53', 'type': 'ERROR', 'children': ['54', '56', '72', '76', '82', '88', '90', '95', '98']},{'id': '54', 'type': 'ERROR', 'children': ['55']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'continue'},{'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '58', 'type': 'subscript', 'children': ['59', '69', '71']},{'id': '59', 'type': 'call', 'children': ['60', '67']},{'id': '60', 'type': 'attribute', 'children': ['61', '66']},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '65', 'type': 'argument_list', 'children': []},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '69', 'type': 'ERROR', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '71', 'type': 'integer', 'children': [], 'value': '10'},{'id': '72', 'type': 'ERROR', 'children': ['73']},{'id': '73', 'type': 'subscript', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '75', 'type': 'integer', 'children': [], 'value': '11'},{'id': '76', 'type': 'call', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '78', 'type': 'argument_list', 'children': ['79']},{'id': '79', 'type': 'subscript', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '81', 'type': 'integer', 'children': [], 'value': '10'},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'subscript', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '87', 'type': 'integer', 'children': [], 'value': '11'},{'id': '88', 'type': 'ERROR', 'children': ['89']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'evalue'},{'id': '90', 'type': 'keyword_argument', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '92', 'type': 'subscript', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '94', 'type': 'integer', 'children': [], 'value': '10'},{'id': '95', 'type': 'subscript', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '97', 'type': 'integer', 'children': [], 'value': '11'},{'id': '98', 'type': 'boolean_operator', 'children': ['99', '102'], 'value': 'and'},{'id': '99', 'type': 'comparison_operator', 'children': ['100', '101'], 'value': 'is'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'evalueT'},{'id': '101', 'type': 'False', 'children': []},{'id': '102', 'type': 'comparison_operator', 'children': ['103', '104'], 'value': '>'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'evalue'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'evalueT'},{'id': '105', 'type': 'block', 'children': ['106']},{'id': '106', 'type': 'continue_statement', 'children': []},{'id': '107', 'type': 'if_statement', 'children': ['108', '115']},{'id': '108', 'type': 'boolean_operator', 'children': ['109', '112'], 'value': 'and'},{'id': '109', 'type': 'comparison_operator', 'children': ['110', '111'], 'value': 'is'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'bitT'},{'id': '111', 'type': 'False', 'children': []},{'id': '112', 'type': 'comparison_operator', 'children': ['113', '114'], 'value': '<'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'bitT'},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'continue_statement', 'children': []},{'id': '117', 'type': 'for_statement', 'children': ['118', '121', '126']},{'id': '118', 'type': 'pattern_list', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '121', 'type': 'call', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '123', 'type': 'argument_list', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '126', 'type': 'block', 'children': ['127']},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'call', 'children': ['129', '134']},{'id': '129', 'type': 'attribute', 'children': ['130', '133']},{'id': '130', 'type': 'subscript', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'hmm'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '134', 'type': 'argument_list', 'children': ['135']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '136', 'type': 'expression_statement', 'children': ['137']},{'id': '137', 'type': 'assignment', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'hmm'},{'id': '139', 'type': 'call', 'children': ['140', '143']},{'id': '140', 'type': 'attribute', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'pd'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'DataFrame'},{'id': '143', 'type': 'argument_list', 'children': ['144']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'hmm'},{'id': '145', 'type': 'for_statement', 'children': ['146', '149', '177']},{'id': '146', 'type': 'pattern_list', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '149', 'type': 'comparison_operator', 'children': ['150', '164', '167'], 'value': 'in'},{'id': '150', 'type': 'call', 'children': ['151', '154']},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'hmm'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'groupby'},{'id': '154', 'type': 'argument_list', 'children': ['155', '161']},{'id': '155', 'type': 'keyword_argument', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '157', 'type': 'list', 'children': ['158', '159'], 'value': "['\n df = df.sort_values(by = ['bitscore']"},{'id': '158', 'type': 'string', 'children': [], 'value': "'\n df = df.sort_values(by = ['"},{'id': '159', 'type': 'ERROR', 'children': ['160']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'bitscore'},{'id': '161', 'type': 'keyword_argument', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '163', 'type': 'False', 'children': []},{'id': '164', 'type': 'ERROR', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'for'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'hit'},{'id': '167', 'type': 'subscript', 'children': ['168', '173']},{'id': '168', 'type': 'attribute', 'children': ['169', '172']},{'id': '169', 'type': 'subscript', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '173', 'type': 'slice', 'children': ['174', '175', '176']},{'id': '174', 'type': 'integer', 'children': [], 'value': '0'},{'id': '175', 'type': 'colon', 'children': []},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'numHits'},{'id': '177', 'type': 'block', 'children': ['178']},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'yield', 'children': ['180']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'hit'} | def numBlast_sort(blast, numHits, evalueT, bitT):
header = ['
'qstart', 'qend', 'tstart', 'tend', 'evalue', 'bitscore']
yield header
hmm = {h:[] for h in header}
for line in blast:
if line.startswith('
continue
line = line.strip().split('\t')
line[10], line[11] = float(line[10]), float(line[11])
evalue, bit = line[10], line[11]
if evalueT is not False and evalue > evalueT:
continue
if bitT is not False and bit < bitT:
continue
for i, h in zip(line, header):
hmm[h].append(i)
hmm = pd.DataFrame(hmm)
for query, df in hmm.groupby(by = ['
df = df.sort_values(by = ['bitscore'], ascending = False)
for hit in df[header].values[0:numHits]:
yield hit |
{'id': '0', 'type': 'module', 'children': ['1', '64', '67', '75', '267']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9', '47']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'numDomtblout'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'domtblout'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'numHits'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'evalueT'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'bitT'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '9', 'type': 'ERROR', 'children': ['10', '29', '30', '40', '42', '43', '44', '45', '46']},{'id': '10', 'type': 'if_statement', 'children': ['11', '14']},{'id': '11', 'type': 'comparison_operator', 'children': ['12', '13'], 'value': 'is'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '13', 'type': 'True', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '28']},{'id': '15', 'type': 'for_statement', 'children': ['16', '17', '24']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'hit'},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'numDomtblout_sort'},{'id': '19', 'type': 'argument_list', 'children': ['20', '21', '22', '23']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'domtblout'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'numHits'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'evalueT'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'bitT'},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'yield', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'hit'},{'id': '28', 'type': 'return_statement', 'children': []},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '30', 'type': 'concatenated_string', 'children': ['31', '32', '35', '36', '39']},{'id': '31', 'type': 'string', 'children': [], 'value': "'\n '"},{'id': '32', 'type': 'ERROR', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '35', 'type': 'string', 'children': [], 'value': "', '"},{'id': '36', 'type': 'ERROR', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'accession'},{'id': '39', 'type': 'string', 'children': [], 'value': "', '"},{'id': '40', 'type': 'ERROR', 'children': ['41']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'qlen'},{'id': '42', 'type': 'string', 'children': [], 'value': "'full E-value'"},{'id': '43', 'type': 'string', 'children': [], 'value': "'full score'"},{'id': '44', 'type': 'string', 'children': [], 'value': "'full bias'"},{'id': '45', 'type': 'ERROR', 'children': []},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'domain'},{'id': '47', 'type': 'block', 'children': ['48', '53', '60']},{'id': '48', 'type': 'expression_statement', 'children': ['49', '50', '51', '52']},{'id': '49', 'type': 'string', 'children': [], 'value': "'domain c-Evalue'"},{'id': '50', 'type': 'string', 'children': [], 'value': "'domain i-Evalue'"},{'id': '51', 'type': 'string', 'children': [], 'value': "'domain score'"},{'id': '52', 'type': 'string', 'children': [], 'value': "'domain bias'"},{'id': '53', 'type': 'expression_statement', 'children': ['54', '55', '56', '57', '58', '59']},{'id': '54', 'type': 'string', 'children': [], 'value': "'hmm from'"},{'id': '55', 'type': 'string', 'children': [], 'value': "'hmm to'"},{'id': '56', 'type': 'string', 'children': [], 'value': "'seq from'"},{'id': '57', 'type': 'string', 'children': [], 'value': "'seq to'"},{'id': '58', 'type': 'string', 'children': [], 'value': "'env from'"},{'id': '59', 'type': 'string', 'children': [], 'value': "'env to'"},{'id': '60', 'type': 'ERROR', 'children': ['61']},{'id': '61', 'type': 'expression_statement', 'children': ['62', '63']},{'id': '62', 'type': 'string', 'children': [], 'value': "'acc'"},{'id': '63', 'type': 'string', 'children': [], 'value': "'target description'"},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'yield', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'assignment', 'children': ['69', '72']},{'id': '69', 'type': 'pattern_list', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'prev'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '72', 'type': 'expression_list', 'children': ['73', '74']},{'id': '73', 'type': 'None', 'children': []},{'id': '74', 'type': 'list', 'children': [], 'value': '[]'},{'id': '75', 'type': 'for_statement', 'children': ['76', '77', '78']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'domtblout'},{'id': '78', 'type': 'block', 'children': ['79', '199', '263']},{'id': '79', 'type': 'if_statement', 'children': ['80', '83', '173']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '83', 'type': 'ERROR', 'children': ['84', '86', '134', '138', '144', '150', '152', '157', '164', '167', '169', '170']},{'id': '84', 'type': 'ERROR', 'children': ['85']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'continue'},{'id': '86', 'type': 'keyword_argument', 'children': ['87', '88', '123']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '88', 'type': 'ERROR', 'children': ['89', '98', '99', '109', '110', '116', '122']},{'id': '89', 'type': 'call', 'children': ['90', '97']},{'id': '90', 'type': 'attribute', 'children': ['91', '96']},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '95', 'type': 'argument_list', 'children': []},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '97', 'type': 'argument_list', 'children': []},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'desc'},{'id': '99', 'type': 'call', 'children': ['100', '103']},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'string', 'children': [], 'value': "' '"},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '103', 'type': 'argument_list', 'children': ['104']},{'id': '104', 'type': 'subscript', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '106', 'type': 'slice', 'children': ['107', '108']},{'id': '107', 'type': 'integer', 'children': [], 'value': '18'},{'id': '108', 'type': 'colon', 'children': []},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '110', 'type': 'subscript', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '112', 'type': 'slice', 'children': ['113', '114', '115']},{'id': '113', 'type': 'integer', 'children': [], 'value': '0'},{'id': '114', 'type': 'colon', 'children': []},{'id': '115', 'type': 'integer', 'children': [], 'value': '18'},{'id': '116', 'type': 'call', 'children': ['117', '120']},{'id': '117', 'type': 'attribute', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '120', 'type': 'argument_list', 'children': ['121']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'desc'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '123', 'type': 'binary_operator', 'children': ['124', '127'], 'value': '+'},{'id': '124', 'type': 'subscript', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '126', 'type': 'integer', 'children': [], 'value': '0'},{'id': '127', 'type': 'subscript', 'children': ['128', '131', '133']},{'id': '128', 'type': 'subscript', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '130', 'type': 'integer', 'children': [], 'value': '9'},{'id': '131', 'type': 'ERROR', 'children': ['132']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '133', 'type': 'integer', 'children': [], 'value': '11'},{'id': '134', 'type': 'ERROR', 'children': ['135']},{'id': '135', 'type': 'subscript', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '137', 'type': 'integer', 'children': [], 'value': '13'},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'subscript', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '143', 'type': 'integer', 'children': [], 'value': '11'},{'id': '144', 'type': 'call', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'subscript', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '149', 'type': 'integer', 'children': [], 'value': '13'},{'id': '150', 'type': 'ERROR', 'children': ['151']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'evalue'},{'id': '152', 'type': 'keyword_argument', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'bitscore'},{'id': '154', 'type': 'subscript', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '156', 'type': 'integer', 'children': [], 'value': '11'},{'id': '157', 'type': 'subscript', 'children': ['158', '161', '163']},{'id': '158', 'type': 'subscript', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '160', 'type': 'integer', 'children': [], 'value': '13'},{'id': '161', 'type': 'ERROR', 'children': ['162']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '163', 'type': 'integer', 'children': [], 'value': '11'},{'id': '164', 'type': 'subscript', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '166', 'type': 'integer', 'children': [], 'value': '13'},{'id': '167', 'type': 'ERROR', 'children': ['168']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'evalue'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'bitscore'},{'id': '170', 'type': 'comparison_operator', 'children': ['171', '172'], 'value': '!='},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'prev'},{'id': '173', 'type': 'block', 'children': ['174', '195']},{'id': '174', 'type': 'if_statement', 'children': ['175', '181']},{'id': '175', 'type': 'comparison_operator', 'children': ['176', '180'], 'value': '>'},{'id': '176', 'type': 'call', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '178', 'type': 'argument_list', 'children': ['179']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '180', 'type': 'integer', 'children': [], 'value': '0'},{'id': '181', 'type': 'block', 'children': ['182']},{'id': '182', 'type': 'for_statement', 'children': ['183', '184', '191']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'hit'},{'id': '184', 'type': 'call', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'top_hits'},{'id': '186', 'type': 'argument_list', 'children': ['187', '188', '189', '190']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'numHits'},{'id': '189', 'type': 'integer', 'children': [], 'value': '13'},{'id': '190', 'type': 'True', 'children': []},{'id': '191', 'type': 'block', 'children': ['192']},{'id': '192', 'type': 'expression_statement', 'children': ['193']},{'id': '193', 'type': 'yield', 'children': ['194']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'hit'},{'id': '195', 'type': 'expression_statement', 'children': ['196']},{'id': '196', 'type': 'assignment', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '198', 'type': 'list', 'children': [], 'value': '[]'},{'id': '199', 'type': 'if_statement', 'children': ['200', '207', '215', '231', '247']},{'id': '200', 'type': 'boolean_operator', 'children': ['201', '204'], 'value': 'and'},{'id': '201', 'type': 'comparison_operator', 'children': ['202', '203'], 'value': '=='},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'evalueT'},{'id': '203', 'type': 'False', 'children': []},{'id': '204', 'type': 'comparison_operator', 'children': ['205', '206'], 'value': '=='},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'bitT'},{'id': '206', 'type': 'False', 'children': []},{'id': '207', 'type': 'block', 'children': ['208']},{'id': '208', 'type': 'expression_statement', 'children': ['209']},{'id': '209', 'type': 'call', 'children': ['210', '213']},{'id': '210', 'type': 'attribute', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '213', 'type': 'argument_list', 'children': ['214']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '215', 'type': 'elif_clause', 'children': ['216', '223']},{'id': '216', 'type': 'boolean_operator', 'children': ['217', '220'], 'value': 'and'},{'id': '217', 'type': 'comparison_operator', 'children': ['218', '219'], 'value': '<='},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'evalue'},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'evalueT'},{'id': '220', 'type': 'comparison_operator', 'children': ['221', '222'], 'value': '=='},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'bitT'},{'id': '222', 'type': 'False', 'children': []},{'id': '223', 'type': 'block', 'children': ['224']},{'id': '224', 'type': 'expression_statement', 'children': ['225']},{'id': '225', 'type': 'call', 'children': ['226', '229']},{'id': '226', 'type': 'attribute', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '229', 'type': 'argument_list', 'children': ['230']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '231', 'type': 'elif_clause', 'children': ['232', '239']},{'id': '232', 'type': 'boolean_operator', 'children': ['233', '236'], 'value': 'and'},{'id': '233', 'type': 'comparison_operator', 'children': ['234', '235'], 'value': '<='},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'evalue'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'evalueT'},{'id': '236', 'type': 'comparison_operator', 'children': ['237', '238'], 'value': '>='},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'bitT'},{'id': '239', 'type': 'block', 'children': ['240']},{'id': '240', 'type': 'expression_statement', 'children': ['241']},{'id': '241', 'type': 'call', 'children': ['242', '245']},{'id': '242', 'type': 'attribute', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '245', 'type': 'argument_list', 'children': ['246']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '247', 'type': 'elif_clause', 'children': ['248', '255']},{'id': '248', 'type': 'boolean_operator', 'children': ['249', '252'], 'value': 'and'},{'id': '249', 'type': 'comparison_operator', 'children': ['250', '251'], 'value': '=='},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'evalueT'},{'id': '251', 'type': 'False', 'children': []},{'id': '252', 'type': 'comparison_operator', 'children': ['253', '254'], 'value': '>='},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'bitT'},{'id': '255', 'type': 'block', 'children': ['256']},{'id': '256', 'type': 'expression_statement', 'children': ['257']},{'id': '257', 'type': 'call', 'children': ['258', '261']},{'id': '258', 'type': 'attribute', 'children': ['259', '260']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '261', 'type': 'argument_list', 'children': ['262']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '263', 'type': 'expression_statement', 'children': ['264']},{'id': '264', 'type': 'assignment', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'prev'},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '267', 'type': 'for_statement', 'children': ['268', '269', '276', '281']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'hit'},{'id': '269', 'type': 'call', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'top_hits'},{'id': '271', 'type': 'argument_list', 'children': ['272', '273', '274', '275']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'numHits'},{'id': '274', 'type': 'integer', 'children': [], 'value': '13'},{'id': '275', 'type': 'True', 'children': []},{'id': '276', 'type': 'ERROR', 'children': ['277']},{'id': '277', 'type': 'block', 'children': ['278']},{'id': '278', 'type': 'expression_statement', 'children': ['279']},{'id': '279', 'type': 'yield', 'children': ['280']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'hit'},{'id': '281', 'type': 'block', 'children': [], 'value': ''} | def numDomtblout(domtblout, numHits, evalueT, bitT, sort):
if sort is True:
for hit in numDomtblout_sort(domtblout, numHits, evalueT, bitT):
yield hit
return
header = ['
'query name', 'query accession', 'qlen',
'full E-value', 'full score', 'full bias',
'domain
'domain c-Evalue', 'domain i-Evalue', 'domain score', 'domain bias',
'hmm from', 'hmm to', 'seq from', 'seq to', 'env from', 'env to',
'acc', 'target description']
yield header
prev, hits = None, []
for line in domtblout:
if line.startswith('
continue
line = line.strip().split()
desc = ' '.join(line[18:])
line = line[0:18]
line.append(desc)
ID = line[0] + line[9]
line[11], line[13] = float(line[11]), float(line[13])
evalue, bitscore = line[11], line[13]
line[11], line[13] = evalue, bitscore
if ID != prev:
if len(hits) > 0:
for hit in top_hits(hits, numHits, 13, True):
yield hit
hits = []
if evalueT == False and bitT == False:
hits.append(line)
elif evalue <= evalueT and bitT == False:
hits.append(line)
elif evalue <= evalueT and bit >= bitT:
hits.append(line)
elif evalueT == False and bit >= bitT:
hits.append(line)
prev = ID
for hit in top_hits(hits, numHits, 13, True):
yield hit |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'compare_clades'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'pw'},{'id': '5', 'type': 'block', 'children': ['6', '20']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '11', 'type': 'argument_list', 'children': ['12']},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'list_comprehension', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '17', 'type': 'for_in_clause', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'pw'},{'id': '20', 'type': 'for_statement', 'children': ['21', '22', '27']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '24', 'type': 'argument_list', 'children': ['25', '26']},{'id': '25', 'type': 'integer', 'children': [], 'value': '0'},{'id': '26', 'type': 'integer', 'children': [], 'value': '4'},{'id': '27', 'type': 'block', 'children': ['28', '36', '218', '260', '264', '310']},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '33']},{'id': '30', 'type': 'pattern_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'wi'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '33', 'type': 'expression_list', 'children': ['34', '35']},{'id': '34', 'type': 'dictionary', 'children': []},{'id': '35', 'type': 'dictionary', 'children': []},{'id': '36', 'type': 'for_statement', 'children': ['37', '38', '39']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'for_statement', 'children': ['41', '42', '45']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '42', 'type': 'subscript', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'pw'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '45', 'type': 'block', 'children': ['46', '56', '64', '86', '154']},{'id': '46', 'type': 'if_statement', 'children': ['47', '54']},{'id': '47', 'type': 'boolean_operator', 'children': ['48', '51'], 'value': 'or'},{'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': 'not'},{'id': '49', 'type': 'string', 'children': [], 'value': "';'"},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': 'not'},{'id': '52', 'type': 'string', 'children': [], 'value': "';'"},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'continue_statement', 'children': []},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'pident'},{'id': '59', 'type': 'subscript', 'children': ['60', '63']},{'id': '60', 'type': 'subscript', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'pw'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '69']},{'id': '66', 'type': 'pattern_list', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '69', 'type': 'expression_list', 'children': ['70', '78']},{'id': '70', 'type': 'subscript', 'children': ['71', '77']},{'id': '71', 'type': 'call', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'string', 'children': [], 'value': "';'"},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '78', 'type': 'subscript', 'children': ['79', '85']},{'id': '79', 'type': 'call', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '83', 'type': 'argument_list', 'children': ['84']},{'id': '84', 'type': 'string', 'children': [], 'value': "';'"},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '86', 'type': 'if_statement', 'children': ['87', '98', '123']},{'id': '87', 'type': 'boolean_operator', 'children': ['88', '95'], 'value': 'and'},{'id': '88', 'type': 'boolean_operator', 'children': ['89', '92'], 'value': 'and'},{'id': '89', 'type': 'comparison_operator', 'children': ['90', '91'], 'value': '=='},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '91', 'type': 'integer', 'children': [], 'value': '0'},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '94'], 'value': 'in'},{'id': '93', 'type': 'string', 'children': [], 'value': "'_'"},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '95', 'type': 'comparison_operator', 'children': ['96', '97'], 'value': 'in'},{'id': '96', 'type': 'string', 'children': [], 'value': "'_'"},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '98', 'type': 'block', 'children': ['99', '111']},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '102', 'type': 'subscript', 'children': ['103', '110']},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '107', 'type': 'argument_list', 'children': ['108', '109']},{'id': '108', 'type': 'string', 'children': [], 'value': "'_'"},{'id': '109', 'type': 'integer', 'children': [], 'value': '1'},{'id': '110', 'type': 'integer', 'children': [], 'value': '1'},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'assignment', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '114', 'type': 'subscript', 'children': ['115', '122']},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '119', 'type': 'argument_list', 'children': ['120', '121']},{'id': '120', 'type': 'string', 'children': [], 'value': "'_'"},{'id': '121', 'type': 'integer', 'children': [], 'value': '1'},{'id': '122', 'type': 'integer', 'children': [], 'value': '1'},{'id': '123', 'type': 'elif_clause', 'children': ['124', '131']},{'id': '124', 'type': 'boolean_operator', 'children': ['125', '128'], 'value': 'or'},{'id': '125', 'type': 'comparison_operator', 'children': ['126', '127'], 'value': 'in'},{'id': '126', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '128', 'type': 'comparison_operator', 'children': ['129', '130'], 'value': 'in'},{'id': '129', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '131', 'type': 'block', 'children': ['132', '143']},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '135', 'type': 'subscript', 'children': ['136', '142']},{'id': '136', 'type': 'call', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '142', 'type': 'integer', 'children': [], 'value': '1'},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'assignment', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '146', 'type': 'subscript', 'children': ['147', '153']},{'id': '147', 'type': 'call', 'children': ['148', '151']},{'id': '148', 'type': 'attribute', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '151', 'type': 'argument_list', 'children': ['152']},{'id': '152', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '153', 'type': 'integer', 'children': [], 'value': '1'},{'id': '154', 'type': 'if_statement', 'children': ['155', '158', '179']},{'id': '155', 'type': 'comparison_operator', 'children': ['156', '157'], 'value': '=='},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '158', 'type': 'block', 'children': ['159', '170']},{'id': '159', 'type': 'if_statement', 'children': ['160', '163']},{'id': '160', 'type': 'comparison_operator', 'children': ['161', '162'], 'value': 'not'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'wi'},{'id': '163', 'type': 'block', 'children': ['164']},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '169']},{'id': '166', 'type': 'subscript', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'wi'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '169', 'type': 'list', 'children': [], 'value': '[]'},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '177']},{'id': '172', 'type': 'attribute', 'children': ['173', '176']},{'id': '173', 'type': 'subscript', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'wi'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '177', 'type': 'argument_list', 'children': ['178']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'pident'},{'id': '179', 'type': 'else_clause', 'children': ['180']},{'id': '180', 'type': 'block', 'children': ['181', '192', '207']},{'id': '181', 'type': 'if_statement', 'children': ['182', '185']},{'id': '182', 'type': 'comparison_operator', 'children': ['183', '184'], 'value': 'not'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '185', 'type': 'block', 'children': ['186']},{'id': '186', 'type': 'expression_statement', 'children': ['187']},{'id': '187', 'type': 'assignment', 'children': ['188', '191']},{'id': '188', 'type': 'subscript', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '191', 'type': 'dictionary', 'children': []},{'id': '192', 'type': 'if_statement', 'children': ['193', '198']},{'id': '193', 'type': 'comparison_operator', 'children': ['194', '195'], 'value': 'not'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '195', 'type': 'subscript', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '198', 'type': 'block', 'children': ['199']},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '206']},{'id': '201', 'type': 'subscript', 'children': ['202', '205']},{'id': '202', 'type': 'subscript', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '206', 'type': 'list', 'children': [], 'value': '[]'},{'id': '207', 'type': 'expression_statement', 'children': ['208']},{'id': '208', 'type': 'call', 'children': ['209', '216']},{'id': '209', 'type': 'attribute', 'children': ['210', '215']},{'id': '210', 'type': 'subscript', 'children': ['211', '214']},{'id': '211', 'type': 'subscript', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'cA'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'cB'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '216', 'type': 'argument_list', 'children': ['217']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'pident'},{'id': '218', 'type': 'expression_statement', 'children': ['219']},{'id': '219', 'type': 'assignment', 'children': ['220', '221', '236']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '221', 'type': 'ERROR', 'children': ['222', '225', '226']},{'id': '222', 'type': 'ERROR', 'children': ['223', '224']},{'id': '223', 'type': 'escape_sequence', 'children': [], 'value': '\\n'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'for'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'clade'},{'id': '226', 'type': 'comparison_operator', 'children': ['227', '228'], 'value': 'in'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'pidents'},{'id': '228', 'type': 'call', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '230', 'type': 'argument_list', 'children': ['231']},{'id': '231', 'type': 'call', 'children': ['232', '235']},{'id': '232', 'type': 'attribute', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'wi'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '235', 'type': 'argument_list', 'children': []},{'id': '236', 'type': 'type', 'children': ['237']},{'id': '237', 'type': 'call', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '239', 'type': 'argument_list', 'children': ['240']},{'id': '240', 'type': 'call', 'children': ['241', '244']},{'id': '241', 'type': 'attribute', 'children': ['242', '243']},{'id': '242', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '244', 'type': 'argument_list', 'children': ['245']},{'id': '245', 'type': 'list', 'children': ['246', '252', '253'], 'value': "['wi:%s' % str(i), clade, str(min(pidents))]"},{'id': '246', 'type': 'binary_operator', 'children': ['247', '248'], 'value': '%'},{'id': '247', 'type': 'string', 'children': [], 'value': "'wi:%s'"},{'id': '248', 'type': 'call', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '250', 'type': 'argument_list', 'children': ['251']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'clade'},{'id': '253', 'type': 'call', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '255', 'type': 'argument_list', 'children': ['256']},{'id': '256', 'type': 'call', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '258', 'type': 'argument_list', 'children': ['259']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'pidents'},{'id': '260', 'type': 'expression_statement', 'children': ['261']},{'id': '261', 'type': 'assignment', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'comps'},{'id': '263', 'type': 'list', 'children': [], 'value': '[]'},{'id': '264', 'type': 'expression_statement', 'children': ['265']},{'id': '265', 'type': 'assignment', 'children': ['266', '267', '277', '279']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '267', 'type': 'ERROR', 'children': ['268', '271']},{'id': '268', 'type': 'ERROR', 'children': ['269', '270']},{'id': '269', 'type': 'escape_sequence', 'children': [], 'value': '\\n'},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'for'},{'id': '271', 'type': 'comparison_operator', 'children': ['272', '273'], 'value': 'in'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'comp'},{'id': '273', 'type': 'call', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'print_pairwise'},{'id': '275', 'type': 'argument_list', 'children': ['276']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '277', 'type': 'ERROR', 'children': ['278']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'if'},{'id': '279', 'type': 'type', 'children': ['280']},{'id': '280', 'type': 'constrained_type', 'children': ['281', '285']},{'id': '281', 'type': 'type', 'children': ['282']},{'id': '282', 'type': 'comparison_operator', 'children': ['283', '284'], 'value': 'is'},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'comp'},{'id': '284', 'type': 'None', 'children': []},{'id': '285', 'type': 'type', 'children': ['286']},{'id': '286', 'type': 'call', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '288', 'type': 'argument_list', 'children': ['289']},{'id': '289', 'type': 'call', 'children': ['290', '293']},{'id': '290', 'type': 'attribute', 'children': ['291', '292']},{'id': '291', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '293', 'type': 'argument_list', 'children': ['294']},{'id': '294', 'type': 'binary_operator', 'children': ['295', '302'], 'value': '+'},{'id': '295', 'type': 'list', 'children': ['296'], 'value': "['bt:%s' % str(i)]"},{'id': '296', 'type': 'binary_operator', 'children': ['297', '298'], 'value': '%'},{'id': '297', 'type': 'string', 'children': [], 'value': "'bt:%s'"},{'id': '298', 'type': 'call', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '300', 'type': 'argument_list', 'children': ['301']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '302', 'type': 'list_comprehension', 'children': ['303', '307']},{'id': '303', 'type': 'call', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '305', 'type': 'argument_list', 'children': ['306']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '307', 'type': 'for_in_clause', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'comp'},{'id': '310', 'type': 'ERROR', 'children': ['311', '314', '315', '316', '320', '322', '323', '338', '340', '343', '367']},{'id': '311', 'type': 'subscript', 'children': ['312', '313']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'comp'},{'id': '313', 'type': 'integer', 'children': [], 'value': '0'},{'id': '314', 'type': 'string', 'children': [], 'value': "'\n comps.extend([j for j in comp[1:] if j != '"},{'id': '315', 'type': 'ERROR', 'children': []},{'id': '316', 'type': 'call', 'children': ['317', '318']},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'print_comps'},{'id': '318', 'type': 'argument_list', 'children': ['319']},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'comps'},{'id': '320', 'type': 'ERROR', 'children': ['321']},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'comps'},{'id': '322', 'type': 'ERROR', 'children': []},{'id': '323', 'type': 'call', 'children': ['324', '325']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '325', 'type': 'argument_list', 'children': ['326', '329']},{'id': '326', 'type': 'ERROR', 'children': ['327', '328']},{'id': '327', 'type': 'escape_sequence', 'children': [], 'value': '\\n'},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'for'},{'id': '329', 'type': 'comparison_operator', 'children': ['330', '331'], 'value': 'in'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'comp'},{'id': '331', 'type': 'call', 'children': ['332', '333']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'print_pairwise'},{'id': '333', 'type': 'argument_list', 'children': ['334', '335']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '335', 'type': 'keyword_argument', 'children': ['336', '337']},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'median'},{'id': '337', 'type': 'True', 'children': []},{'id': '338', 'type': 'ERROR', 'children': ['339']},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'if'},{'id': '340', 'type': 'comparison_operator', 'children': ['341', '342'], 'value': 'is'},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'comp'},{'id': '342', 'type': 'None', 'children': []},{'id': '343', 'type': 'call', 'children': ['344', '345']},{'id': '344', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '345', 'type': 'argument_list', 'children': ['346']},{'id': '346', 'type': 'call', 'children': ['347', '350']},{'id': '347', 'type': 'attribute', 'children': ['348', '349']},{'id': '348', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '349', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '350', 'type': 'argument_list', 'children': ['351']},{'id': '351', 'type': 'binary_operator', 'children': ['352', '359'], 'value': '+'},{'id': '352', 'type': 'list', 'children': ['353'], 'value': "['bt:%s' % str(i)]"},{'id': '353', 'type': 'binary_operator', 'children': ['354', '355'], 'value': '%'},{'id': '354', 'type': 'string', 'children': [], 'value': "'bt:%s'"},{'id': '355', 'type': 'call', 'children': ['356', '357']},{'id': '356', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '357', 'type': 'argument_list', 'children': ['358']},{'id': '358', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '359', 'type': 'list_comprehension', 'children': ['360', '364']},{'id': '360', 'type': 'call', 'children': ['361', '362']},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '362', 'type': 'argument_list', 'children': ['363']},{'id': '363', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '364', 'type': 'for_in_clause', 'children': ['365', '366']},{'id': '365', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '366', 'type': 'identifier', 'children': [], 'value': 'comp'},{'id': '367', 'type': 'comparison_operator', 'children': ['368', '371'], 'value': '!='},{'id': '368', 'type': 'subscript', 'children': ['369', '370']},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'comp'},{'id': '370', 'type': 'integer', 'children': [], 'value': '0'},{'id': '371', 'type': 'binary_operator', 'children': ['372', '373', '374'], 'value': '-'},{'id': '372', 'type': 'string', 'children': [], 'value': "'\n comps.extend([j for j in comp[1:] if j != '"},{'id': '373', 'type': 'ERROR', 'children': []},{'id': '374', 'type': 'call', 'children': ['375', '376']},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'print_comps'},{'id': '376', 'type': 'argument_list', 'children': ['377']},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'comps'} | def compare_clades(pw):
names = sorted(set([i for i in pw]))
for i in range(0, 4):
wi, bt = {}, {}
for a in names:
for b in pw[a]:
if ';' not in a or ';' not in b:
continue
pident = pw[a][b]
cA, cB = a.split(';')[i], b.split(';')[i]
if i == 0 and '_' in cA and '_' in cB:
cA = cA.rsplit('_', 1)[1]
cB = cB.rsplit('_', 1)[1]
elif '>' in cA or '>' in cB:
cA = cA.split('>')[1]
cB = cB.split('>')[1]
if cA == cB:
if cA not in wi:
wi[cA] = []
wi[cA].append(pident)
else:
if cA not in bt:
bt[cA] = {}
if cB not in bt[cA]:
bt[cA][cB] = []
bt[cA][cB].append(pident)
print('\n
for clade, pidents in list(wi.items()):
print('\t'.join(['wi:%s' % str(i), clade, str(min(pidents))]))
comps = []
print('\n
for comp in print_pairwise(bt):
if comp is not None:
print('\t'.join(['bt:%s' % str(i)] + [str(j) for j in comp]))
if comp[0] != '
comps.extend([j for j in comp[1:] if j != '-'])
print_comps(comps)
comps = []
print('\n
for comp in print_pairwise(bt, median = True):
if comp is not None:
print('\t'.join(['bt:%s' % str(i)] + [str(j) for j in comp]))
if comp[0] != '
comps.extend([j for j in comp[1:] if j != '-'])
print_comps(comps) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'searchAccession'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'acc'},{'id': '5', 'type': 'block', 'children': ['6', '16', '91', '101', '176', '186', '261', '292']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '11']},{'id': '8', 'type': 'pattern_list', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'entrez'},{'id': '13', 'type': 'argument_list', 'children': ['14', '15']},{'id': '14', 'type': 'string', 'children': [], 'value': "'genome'"},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'acc'},{'id': '16', 'type': 'for_statement', 'children': ['17', '18', '23']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'splitlines'},{'id': '22', 'type': 'argument_list', 'children': []},{'id': '23', 'type': 'block', 'children': ['24', '37']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '27', 'type': 'call', 'children': ['28', '36']},{'id': '28', 'type': 'attribute', 'children': ['29', '35']},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'string', 'children': [], 'value': "'ascii'"},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '36', 'type': 'argument_list', 'children': []},{'id': '37', 'type': 'if_statement', 'children': ['38', '45']},{'id': '38', 'type': 'boolean_operator', 'children': ['39', '42'], 'value': 'or'},{'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': 'in'},{'id': '40', 'type': 'string', 'children': [], 'value': "'Assembly_Accession'"},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': 'in'},{'id': '43', 'type': 'string', 'children': [], 'value': "'BioSample'"},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '45', 'type': 'block', 'children': ['46', '78']},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'newAcc'},{'id': '49', 'type': 'subscript', 'children': ['50', '77']},{'id': '50', 'type': 'call', 'children': ['51', '75']},{'id': '51', 'type': 'attribute', 'children': ['52', '74']},{'id': '52', 'type': 'subscript', 'children': ['53', '73']},{'id': '53', 'type': 'call', 'children': ['54', '71']},{'id': '54', 'type': 'attribute', 'children': ['55', '70']},{'id': '55', 'type': 'subscript', 'children': ['56', '69']},{'id': '56', 'type': 'call', 'children': ['57', '67']},{'id': '57', 'type': 'attribute', 'children': ['58', '66']},{'id': '58', 'type': 'subscript', 'children': ['59', '65']},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '65', 'type': 'integer', 'children': [], 'value': '1'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'string', 'children': [], 'value': "'<'"},{'id': '69', 'type': 'integer', 'children': [], 'value': '0'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '73', 'type': 'integer', 'children': [], 'value': '0'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'string', 'children': [], 'value': "','"},{'id': '77', 'type': 'integer', 'children': [], 'value': '0'},{'id': '78', 'type': 'if_statement', 'children': ['79', '85']},{'id': '79', 'type': 'comparison_operator', 'children': ['80', '84'], 'value': '>'},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'newAcc'},{'id': '84', 'type': 'integer', 'children': [], 'value': '0'},{'id': '85', 'type': 'block', 'children': ['86']},{'id': '86', 'type': 'return_statement', 'children': ['87']},{'id': '87', 'type': 'tuple', 'children': ['88', '89', '90']},{'id': '88', 'type': 'True', 'children': []},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'acc'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'newAcc'},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '96']},{'id': '93', 'type': 'pattern_list', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'entrez'},{'id': '98', 'type': 'argument_list', 'children': ['99', '100']},{'id': '99', 'type': 'string', 'children': [], 'value': "'nucleotide'"},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'acc'},{'id': '101', 'type': 'for_statement', 'children': ['102', '103', '108']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'splitlines'},{'id': '107', 'type': 'argument_list', 'children': []},{'id': '108', 'type': 'block', 'children': ['109', '122']},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'assignment', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '112', 'type': 'call', 'children': ['113', '121']},{'id': '113', 'type': 'attribute', 'children': ['114', '120']},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '118', 'type': 'argument_list', 'children': ['119']},{'id': '119', 'type': 'string', 'children': [], 'value': "'ascii'"},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '121', 'type': 'argument_list', 'children': []},{'id': '122', 'type': 'if_statement', 'children': ['123', '130']},{'id': '123', 'type': 'boolean_operator', 'children': ['124', '127'], 'value': 'or'},{'id': '124', 'type': 'comparison_operator', 'children': ['125', '126'], 'value': 'in'},{'id': '125', 'type': 'string', 'children': [], 'value': "'Assembly_Accession'"},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '127', 'type': 'comparison_operator', 'children': ['128', '129'], 'value': 'in'},{'id': '128', 'type': 'string', 'children': [], 'value': "'BioSample'"},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '130', 'type': 'block', 'children': ['131', '163']},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'assignment', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'newAcc'},{'id': '134', 'type': 'subscript', 'children': ['135', '162']},{'id': '135', 'type': 'call', 'children': ['136', '160']},{'id': '136', 'type': 'attribute', 'children': ['137', '159']},{'id': '137', 'type': 'subscript', 'children': ['138', '158']},{'id': '138', 'type': 'call', 'children': ['139', '156']},{'id': '139', 'type': 'attribute', 'children': ['140', '155']},{'id': '140', 'type': 'subscript', 'children': ['141', '154']},{'id': '141', 'type': 'call', 'children': ['142', '152']},{'id': '142', 'type': 'attribute', 'children': ['143', '151']},{'id': '143', 'type': 'subscript', 'children': ['144', '150']},{'id': '144', 'type': 'call', 'children': ['145', '148']},{'id': '145', 'type': 'attribute', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '148', 'type': 'argument_list', 'children': ['149']},{'id': '149', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '150', 'type': 'integer', 'children': [], 'value': '1'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'string', 'children': [], 'value': "'<'"},{'id': '154', 'type': 'integer', 'children': [], 'value': '0'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '156', 'type': 'argument_list', 'children': ['157']},{'id': '157', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '158', 'type': 'integer', 'children': [], 'value': '0'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'string', 'children': [], 'value': "','"},{'id': '162', 'type': 'integer', 'children': [], 'value': '0'},{'id': '163', 'type': 'if_statement', 'children': ['164', '170']},{'id': '164', 'type': 'comparison_operator', 'children': ['165', '169'], 'value': '>'},{'id': '165', 'type': 'call', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '167', 'type': 'argument_list', 'children': ['168']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'newAcc'},{'id': '169', 'type': 'integer', 'children': [], 'value': '0'},{'id': '170', 'type': 'block', 'children': ['171']},{'id': '171', 'type': 'return_statement', 'children': ['172']},{'id': '172', 'type': 'tuple', 'children': ['173', '174', '175']},{'id': '173', 'type': 'True', 'children': []},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'acc'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'newAcc'},{'id': '176', 'type': 'expression_statement', 'children': ['177']},{'id': '177', 'type': 'assignment', 'children': ['178', '181']},{'id': '178', 'type': 'pattern_list', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '181', 'type': 'call', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'entrez'},{'id': '183', 'type': 'argument_list', 'children': ['184', '185']},{'id': '184', 'type': 'string', 'children': [], 'value': "'assembly'"},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'acc'},{'id': '186', 'type': 'for_statement', 'children': ['187', '188', '193']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '188', 'type': 'call', 'children': ['189', '192']},{'id': '189', 'type': 'attribute', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'splitlines'},{'id': '192', 'type': 'argument_list', 'children': []},{'id': '193', 'type': 'block', 'children': ['194', '207']},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'assignment', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '197', 'type': 'call', 'children': ['198', '206']},{'id': '198', 'type': 'attribute', 'children': ['199', '205']},{'id': '199', 'type': 'call', 'children': ['200', '203']},{'id': '200', 'type': 'attribute', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '203', 'type': 'argument_list', 'children': ['204']},{'id': '204', 'type': 'string', 'children': [], 'value': "'ascii'"},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '206', 'type': 'argument_list', 'children': []},{'id': '207', 'type': 'if_statement', 'children': ['208', '215']},{'id': '208', 'type': 'boolean_operator', 'children': ['209', '212'], 'value': 'or'},{'id': '209', 'type': 'comparison_operator', 'children': ['210', '211'], 'value': 'in'},{'id': '210', 'type': 'string', 'children': [], 'value': "'Assembly_Accession'"},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '212', 'type': 'comparison_operator', 'children': ['213', '214'], 'value': 'in'},{'id': '213', 'type': 'string', 'children': [], 'value': "'BioSample'"},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '215', 'type': 'block', 'children': ['216', '248']},{'id': '216', 'type': 'expression_statement', 'children': ['217']},{'id': '217', 'type': 'assignment', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'newAcc'},{'id': '219', 'type': 'subscript', 'children': ['220', '247']},{'id': '220', 'type': 'call', 'children': ['221', '245']},{'id': '221', 'type': 'attribute', 'children': ['222', '244']},{'id': '222', 'type': 'subscript', 'children': ['223', '243']},{'id': '223', 'type': 'call', 'children': ['224', '241']},{'id': '224', 'type': 'attribute', 'children': ['225', '240']},{'id': '225', 'type': 'subscript', 'children': ['226', '239']},{'id': '226', 'type': 'call', 'children': ['227', '237']},{'id': '227', 'type': 'attribute', 'children': ['228', '236']},{'id': '228', 'type': 'subscript', 'children': ['229', '235']},{'id': '229', 'type': 'call', 'children': ['230', '233']},{'id': '230', 'type': 'attribute', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '233', 'type': 'argument_list', 'children': ['234']},{'id': '234', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '235', 'type': 'integer', 'children': [], 'value': '1'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '237', 'type': 'argument_list', 'children': ['238']},{'id': '238', 'type': 'string', 'children': [], 'value': "'<'"},{'id': '239', 'type': 'integer', 'children': [], 'value': '0'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '241', 'type': 'argument_list', 'children': ['242']},{'id': '242', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '243', 'type': 'integer', 'children': [], 'value': '0'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '245', 'type': 'argument_list', 'children': ['246']},{'id': '246', 'type': 'string', 'children': [], 'value': "','"},{'id': '247', 'type': 'integer', 'children': [], 'value': '0'},{'id': '248', 'type': 'if_statement', 'children': ['249', '255']},{'id': '249', 'type': 'comparison_operator', 'children': ['250', '254'], 'value': '>'},{'id': '250', 'type': 'call', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '252', 'type': 'argument_list', 'children': ['253']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'newAcc'},{'id': '254', 'type': 'integer', 'children': [], 'value': '0'},{'id': '255', 'type': 'block', 'children': ['256']},{'id': '256', 'type': 'return_statement', 'children': ['257']},{'id': '257', 'type': 'tuple', 'children': ['258', '259', '260']},{'id': '258', 'type': 'True', 'children': []},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'acc'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'newAcc'},{'id': '261', 'type': 'for_statement', 'children': ['262', '263', '268']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '263', 'type': 'call', 'children': ['264', '267']},{'id': '264', 'type': 'attribute', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'splitlines'},{'id': '267', 'type': 'argument_list', 'children': []},{'id': '268', 'type': 'block', 'children': ['269', '282']},{'id': '269', 'type': 'expression_statement', 'children': ['270']},{'id': '270', 'type': 'assignment', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '272', 'type': 'call', 'children': ['273', '281']},{'id': '273', 'type': 'attribute', 'children': ['274', '280']},{'id': '274', 'type': 'call', 'children': ['275', '278']},{'id': '275', 'type': 'attribute', 'children': ['276', '277']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '278', 'type': 'argument_list', 'children': ['279']},{'id': '279', 'type': 'string', 'children': [], 'value': "'ascii'"},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '281', 'type': 'argument_list', 'children': []},{'id': '282', 'type': 'if_statement', 'children': ['283', '286']},{'id': '283', 'type': 'comparison_operator', 'children': ['284', '285'], 'value': 'in'},{'id': '284', 'type': 'string', 'children': [], 'value': "'500 Can'"},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '286', 'type': 'block', 'children': ['287']},{'id': '287', 'type': 'return_statement', 'children': ['288']},{'id': '288', 'type': 'tuple', 'children': ['289', '290', '291']},{'id': '289', 'type': 'False', 'children': []},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'acc'},{'id': '291', 'type': 'string', 'children': [], 'value': "'no network'"},{'id': '292', 'type': 'return_statement', 'children': ['293']},{'id': '293', 'type': 'tuple', 'children': ['294', '295', '296']},{'id': '294', 'type': 'False', 'children': []},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'acc'},{'id': '296', 'type': 'string', 'children': [], 'value': "'efetch failed'"} | def searchAccession(acc):
out, error = entrez('genome', acc)
for line in out.splitlines():
line = line.decode('ascii').strip()
if 'Assembly_Accession' in line or 'BioSample' in line:
newAcc = line.split('>')[1].split('<')[0].split('.')[0].split(',')[0]
if len(newAcc) > 0:
return (True, acc, newAcc)
out, error = entrez('nucleotide', acc)
for line in out.splitlines():
line = line.decode('ascii').strip()
if 'Assembly_Accession' in line or 'BioSample' in line:
newAcc = line.split('>')[1].split('<')[0].split('.')[0].split(',')[0]
if len(newAcc) > 0:
return (True, acc, newAcc)
out, error = entrez('assembly', acc)
for line in out.splitlines():
line = line.decode('ascii').strip()
if 'Assembly_Accession' in line or 'BioSample' in line:
newAcc = line.split('>')[1].split('<')[0].split('.')[0].split(',')[0]
if len(newAcc) > 0:
return (True, acc, newAcc)
for error in error.splitlines():
error = error.decode('ascii').strip()
if '500 Can' in error:
return (False, acc, 'no network')
return (False, acc, 'efetch failed') |
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'type': 'identifier', 'children': [], 'value': '_GLOBAL_LOG_CONFIGURED'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'return_statement', 'children': []},{'id': '30', 'type': 'function_definition', 'children': ['31', '32', '34']},{'id': '31', 'type': 'function_name', 'children': [], 'value': 'wrap_hook'},{'id': '32', 'type': 'parameters', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '34', 'type': 'block', 'children': ['35', '55']},{'id': '35', 'type': 'decorated_definition', 'children': ['36', '41']},{'id': '36', 'type': 'decorator', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'wraps'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '41', 'type': 'function_definition', 'children': ['42', '43', '47']},{'id': '42', 'type': 'function_name', 'children': [], 'value': 'processor'},{'id': '43', 'type': 'parameters', 'children': ['44', '45', '46']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'method_name'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'event_dict'},{'id': '47', 'type': 'block', 'children': ['48', '53']},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'call', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'event_dict'},{'id': '53', 'type': 'return_statement', 'children': ['54']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'event_dict'},{'id': '55', 'type': 'return_statement', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'processor'},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'define_log_processors'},{'id': '62', 'type': 'argument_list', 'children': []},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'call', 'children': ['65', '68']},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'list_comprehension', 'children': ['70', '74']},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'wrap_hook'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '74', 'type': 'for_in_clause', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'pre_hooks'},{'id': '77', 'type': 'if_statement', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'metric_grouping_interval'},{'id': '79', 'type': 'block', 'children': ['80']},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'call', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'metrics_grouping_processor'},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'log_renderer'},{'id': '90', 'type': 'call', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'define_log_renderer'},{'id': '92', 'type': 'argument_list', 'children': ['93', '94', '95']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'fpath'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'quiet'},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'assignment', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'stderr_required'},{'id': '99', 'type': '()', 'children': ['100']},{'id': '100', 'type': 'not_operator', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'quiet'},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'assignment', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'pretty_to_stderr'},{'id': '105', 'type': '()', 'children': ['106']},{'id': '106', 'type': 'boolean_operator', 'children': ['107', '108'], 'value': 'and'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'stderr_required'},{'id': '108', 'type': '()', 'children': ['109']},{'id': '109', 'type': 'boolean_operator', 'children': ['110', '113'], 'value': 'or'},{'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': '=='},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '112', 'type': 'string', 'children': [], 'value': '"pretty"'},{'id': '113', 'type': '()', 'children': ['114']},{'id': '114', 'type': 'boolean_operator', 'children': ['115', '118'], 'value': 'and'},{'id': '115', 'type': 'comparison_operator', 'children': ['116', '117'], 'value': 'is'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '117', 'type': 'None', 'children': []},{'id': '118', 'type': 'call', 'children': ['119', '124']},{'id': '119', 'type': 'attribute', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'isatty'},{'id': '124', 'type': 'argument_list', 'children': []},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'should_inject_pretty_renderer'},{'id': '128', 'type': '()', 'children': ['129']},{'id': '129', 'type': 'boolean_operator', 'children': ['130', '131'], 'value': 'and'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'pretty_to_stderr'},{'id': '131', 'type': 'not_operator', 'children': ['132']},{'id': '132', 'type': 'call', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '134', 'type': 'argument_list', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'log_renderer'},{'id': '136', 'type': 'attribute', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'structlog'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'dev'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'ConsoleRenderer'},{'id': '141', 'type': 'if_statement', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'should_inject_pretty_renderer'},{'id': '143', 'type': 'block', 'children': ['144', '148']},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'stderr_required'},{'id': '147', 'type': 'False', 'children': []},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'call', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'StderrConsoleRenderer'},{'id': '156', 'type': 'argument_list', 'children': []},{'id': '157', 'type': 'expression_statement', 'children': ['158']},{'id': '158', 'type': 'call', 'children': ['159', '162']},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '162', 'type': 'argument_list', 'children': ['163']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'log_renderer'},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'call', 'children': ['166', '169']},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '169', 'type': 'argument_list', 'children': ['170']},{'id': '170', 'type': 'list_comprehension', 'children': ['171', '175']},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'wrap_hook'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '175', 'type': 'for_in_clause', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'post_hooks'},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'assignment', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'streams'},{'id': '181', 'type': 'list', 'children': [], 'value': '[]'},{'id': '182', 'type': 'if_statement', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'stderr_required'},{'id': '184', 'type': 'block', 'children': ['185']},{'id': '185', 'type': 'expression_statement', 'children': ['186']},{'id': '186', 'type': 'call', 'children': ['187', '190']},{'id': '187', 'type': 'attribute', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'streams'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '190', 'type': 'argument_list', 'children': ['191']},{'id': '191', 'type': 'attribute', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '194', 'type': 'if_statement', 'children': ['195', '198']},{'id': '195', 'type': 'comparison_operator', 'children': ['196', '197'], 'value': 'is'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'fpath'},{'id': '197', 'type': 'None', 'children': []},{'id': '198', 'type': 'block', 'children': ['199']},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'call', 'children': ['201', '204']},{'id': '201', 'type': 'attribute', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'streams'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '204', 'type': 'argument_list', 'children': ['205']},{'id': '205', 'type': 'call', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '207', 'type': 'argument_list', 'children': ['208', '209']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'fpath'},{'id': '209', 'type': 'string', 'children': [], 'value': "'a'"},{'id': '210', 'type': 'assert_statement', 'children': ['211', '217']},{'id': '211', 'type': 'comparison_operator', 'children': ['212', '216'], 'value': '!='},{'id': '212', 'type': 'call', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '214', 'type': 'argument_list', 'children': ['215']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'streams'},{'id': '216', 'type': 'integer', 'children': [], 'value': '0'},{'id': '217', 'type': 'string', 'children': [], 'value': '"cannot configure logger for 0 streams"'},{'id': '218', 'type': 'expression_statement', 'children': ['219']},{'id': '219', 'type': 'assignment', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'stream'},{'id': '221', 'type': 'conditional_expression', 'children': ['222', '225', '231'], 'value': 'if'},{'id': '222', 'type': 'subscript', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'streams'},{'id': '224', 'type': 'integer', 'children': [], 'value': '0'},{'id': '225', 'type': 'comparison_operator', 'children': ['226', '230'], 'value': '=='},{'id': '226', 'type': 'call', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '228', 'type': 'argument_list', 'children': ['229']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'streams'},{'id': '230', 'type': 'integer', 'children': [], 'value': '1'},{'id': '231', 'type': 'call', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'Stream'},{'id': '233', 'type': 'argument_list', 'children': ['234']},{'id': '234', 'type': 'list_splat', 'children': ['235']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'streams'},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'call', 'children': ['238', '241']},{'id': '238', 'type': 'attribute', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'atexit'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'register'},{'id': '241', 'type': 'argument_list', 'children': ['242']},{'id': '242', 'type': 'attribute', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'stream'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '245', 'type': 'expression_statement', 'children': ['246']},{'id': '246', 'type': 'call', 'children': ['247', '250']},{'id': '247', 'type': 'attribute', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'structlog'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'configure'},{'id': '250', 'type': 'argument_list', 'children': ['251', '254', '257', '266', '269']},{'id': '251', 'type': 'keyword_argument', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '254', 'type': 'keyword_argument', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'context_class'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '257', 'type': 'keyword_argument', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'logger_factory'},{'id': '259', 'type': 'call', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'LevelLoggerFactory'},{'id': '261', 'type': 'argument_list', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'stream'},{'id': '263', 'type': 'keyword_argument', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '266', 'type': 'keyword_argument', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'wrapper_class'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'BoundLevelLogger'},{'id': '269', 'type': 'keyword_argument', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'cache_logger_on_first_use'},{'id': '271', 'type': 'True', 'children': []},{'id': '272', 'type': 'expression_statement', 'children': ['273']},{'id': '273', 'type': 'assignment', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'stdlib_root_log'},{'id': '275', 'type': 'call', 'children': ['276', '279']},{'id': '276', 'type': 'attribute', 'children': ['277', '278']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'getLogger'},{'id': '279', 'type': 'argument_list', 'children': []},{'id': '280', 'type': 'expression_statement', 'children': ['281']},{'id': '281', 'type': 'call', 'children': ['282', '285']},{'id': '282', 'type': 'attribute', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'stdlib_root_log'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'addHandler'},{'id': '285', 'type': 'argument_list', 'children': ['286']},{'id': '286', 'type': 'call', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'StdlibStructlogHandler'},{'id': '288', 'type': 'argument_list', 'children': []},{'id': '289', 'type': 'expression_statement', 'children': ['290']},{'id': '290', 'type': 'call', 'children': ['291', '294']},{'id': '291', 'type': 'attribute', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'stdlib_root_log'},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'setLevel'},{'id': '294', 'type': 'argument_list', 'children': ['295']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '296', 'type': 'expression_statement', 'children': ['297']},{'id': '297', 'type': 'assignment', 'children': ['298', '299']},{'id': '298', 'type': 'identifier', 'children': [], 'value': '_GLOBAL_LOG_CONFIGURED'},{'id': '299', 'type': 'True', 'children': []} | def _configure_logger(fmt, quiet, level, fpath,
pre_hooks, post_hooks, metric_grouping_interval):
level = getattr(logging, level.upper())
global _GLOBAL_LOG_CONFIGURED
if _GLOBAL_LOG_CONFIGURED:
return
def wrap_hook(fn):
@wraps(fn)
def processor(logger, method_name, event_dict):
fn(event_dict)
return event_dict
return processor
processors = define_log_processors()
processors.extend(
[ wrap_hook(h) for h in pre_hooks ]
)
if metric_grouping_interval:
processors.append(metrics_grouping_processor)
log_renderer = define_log_renderer(fmt, fpath, quiet)
stderr_required = (not quiet)
pretty_to_stderr = (
stderr_required
and (
fmt == "pretty"
or (fmt is None and sys.stderr.isatty())
)
)
should_inject_pretty_renderer = (
pretty_to_stderr
and not isinstance(log_renderer, structlog.dev.ConsoleRenderer)
)
if should_inject_pretty_renderer:
stderr_required = False
processors.append(StderrConsoleRenderer())
processors.append(log_renderer)
processors.extend(
[ wrap_hook(h) for h in post_hooks ]
)
streams = []
if stderr_required:
streams.append(sys.stderr)
if fpath is not None:
streams.append(open(fpath, 'a'))
assert len(streams) != 0, "cannot configure logger for 0 streams"
stream = streams[0] if len(streams) == 1 else Stream(*streams)
atexit.register(stream.close)
structlog.configure(
processors=processors,
context_class=dict,
logger_factory=LevelLoggerFactory(stream, level=level),
wrapper_class=BoundLevelLogger,
cache_logger_on_first_use=True,
)
stdlib_root_log = logging.getLogger()
stdlib_root_log.addHandler(StdlibStructlogHandler())
stdlib_root_log.setLevel(level)
_GLOBAL_LOG_CONFIGURED = True |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'combine_modifiers'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'graphemes'},{'id': '6', 'type': 'block', 'children': ['7', '11', '15', '22', '203', '213', '217', '221', '278']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '10', 'type': 'list', 'children': [], 'value': '[]'},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '14', 'type': 'string', 'children': [], 'value': '""'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'graphemes'},{'id': '22', 'type': 'for_statement', 'children': ['23', '24', '28']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'reversed'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'graphemes'},{'id': '28', 'type': 'block', 'children': ['29', '33', '85', '119', '190', '199']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'augmented_assignment', 'children': ['31', '32'], 'value': '-='},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '32', 'type': 'integer', 'children': [], 'value': '1'},{'id': '33', 'type': 'if_statement', 'children': ['34', '60']},{'id': '34', 'type': 'boolean_operator', 'children': ['35', '50', '51'], 'value': 'and'},{'id': '35', 'type': 'boolean_operator', 'children': ['36', '42'], 'value': 'and'},{'id': '36', 'type': 'comparison_operator', 'children': ['37', '41'], 'value': '=='},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '41', 'type': 'integer', 'children': [], 'value': '1'},{'id': '42', 'type': 'comparison_operator', 'children': ['43', '49'], 'value': '=='},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'unicodedata'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'category'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '49', 'type': 'string', 'children': [], 'value': '"Lm"'},{'id': '50', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '51', 'type': 'not_operator', 'children': ['52']},{'id': '52', 'type': 'comparison_operator', 'children': ['53', '57'], 'value': 'in'},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'ord'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '57', 'type': 'list', 'children': ['58', '59'], 'value': '[712, 716]'},{'id': '58', 'type': 'integer', 'children': [], 'value': '712'},{'id': '59', 'type': 'integer', 'children': [], 'value': '716'},{'id': '60', 'type': 'block', 'children': ['61', '67', '84']},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '64', 'type': 'binary_operator', 'children': ['65', '66'], 'value': '+'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '67', 'type': 'if_statement', 'children': ['68', '71']},{'id': '68', 'type': 'comparison_operator', 'children': ['69', '70'], 'value': '=='},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '70', 'type': 'integer', 'children': [], 'value': '0'},{'id': '71', 'type': 'block', 'children': ['72']},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '78']},{'id': '74', 'type': 'subscript', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '76', 'type': 'unary_operator', 'children': ['77'], 'value': '-'},{'id': '77', 'type': 'integer', 'children': [], 'value': '1'},{'id': '78', 'type': 'binary_operator', 'children': ['79', '80'], 'value': '+'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '80', 'type': 'subscript', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '82', 'type': 'unary_operator', 'children': ['83'], 'value': '-'},{'id': '83', 'type': 'integer', 'children': [], 'value': '1'},{'id': '84', 'type': 'continue_statement', 'children': []},{'id': '85', 'type': 'if_statement', 'children': ['86', '101']},{'id': '86', 'type': 'boolean_operator', 'children': ['87', '93'], 'value': 'and'},{'id': '87', 'type': 'comparison_operator', 'children': ['88', '92'], 'value': '=='},{'id': '88', 'type': 'call', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '92', 'type': 'integer', 'children': [], 'value': '1'},{'id': '93', 'type': 'comparison_operator', 'children': ['94', '98'], 'value': 'in'},{'id': '94', 'type': 'call', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'ord'},{'id': '96', 'type': 'argument_list', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '98', 'type': 'list', 'children': ['99', '100'], 'value': '[712, 716]'},{'id': '99', 'type': 'integer', 'children': [], 'value': '712'},{'id': '100', 'type': 'integer', 'children': [], 'value': '716'},{'id': '101', 'type': 'block', 'children': ['102', '114', '118']},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'assignment', 'children': ['104', '108']},{'id': '104', 'type': 'subscript', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '106', 'type': 'unary_operator', 'children': ['107'], 'value': '-'},{'id': '107', 'type': 'integer', 'children': [], 'value': '1'},{'id': '108', 'type': 'binary_operator', 'children': ['109', '110'], 'value': '+'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '110', 'type': 'subscript', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '112', 'type': 'unary_operator', 'children': ['113'], 'value': '-'},{'id': '113', 'type': 'integer', 'children': [], 'value': '1'},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'assignment', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '117', 'type': 'string', 'children': [], 'value': '""'},{'id': '118', 'type': 'continue_statement', 'children': []},{'id': '119', 'type': 'if_statement', 'children': ['120', '135']},{'id': '120', 'type': 'boolean_operator', 'children': ['121', '127'], 'value': 'and'},{'id': '121', 'type': 'comparison_operator', 'children': ['122', '126'], 'value': '=='},{'id': '122', 'type': 'call', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '124', 'type': 'argument_list', 'children': ['125']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '126', 'type': 'integer', 'children': [], 'value': '1'},{'id': '127', 'type': 'comparison_operator', 'children': ['128', '134'], 'value': '=='},{'id': '128', 'type': 'call', 'children': ['129', '132']},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'unicodedata'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'category'},{'id': '132', 'type': 'argument_list', 'children': ['133']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '134', 'type': 'string', 'children': [], 'value': '"Sk"'},{'id': '135', 'type': 'block', 'children': ['136']},{'id': '136', 'type': 'if_statement', 'children': ['137', '143', '156']},{'id': '137', 'type': 'comparison_operator', 'children': ['138', '142'], 'value': '=='},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '142', 'type': 'integer', 'children': [], 'value': '0'},{'id': '143', 'type': 'block', 'children': ['144', '151', '155']},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'call', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '149', 'type': 'argument_list', 'children': ['150']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '151', 'type': 'expression_statement', 'children': ['152']},{'id': '152', 'type': 'assignment', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '154', 'type': 'string', 'children': [], 'value': '""'},{'id': '155', 'type': 'continue_statement', 'children': []},{'id': '156', 'type': 'else_clause', 'children': ['157']},{'id': '157', 'type': 'block', 'children': ['158']},{'id': '158', 'type': 'if_statement', 'children': ['159', '172']},{'id': '159', 'type': 'comparison_operator', 'children': ['160', '171'], 'value': '=='},{'id': '160', 'type': 'call', 'children': ['161', '164']},{'id': '161', 'type': 'attribute', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'unicodedata'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'category'},{'id': '164', 'type': 'argument_list', 'children': ['165']},{'id': '165', 'type': 'subscript', 'children': ['166', '170']},{'id': '166', 'type': 'subscript', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '168', 'type': 'unary_operator', 'children': ['169'], 'value': '-'},{'id': '169', 'type': 'integer', 'children': [], 'value': '1'},{'id': '170', 'type': 'integer', 'children': [], 'value': '0'},{'id': '171', 'type': 'string', 'children': [], 'value': '"Sk"'},{'id': '172', 'type': 'block', 'children': ['173', '185', '189']},{'id': '173', 'type': 'expression_statement', 'children': ['174']},{'id': '174', 'type': 'assignment', 'children': ['175', '179']},{'id': '175', 'type': 'subscript', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '177', 'type': 'unary_operator', 'children': ['178'], 'value': '-'},{'id': '178', 'type': 'integer', 'children': [], 'value': '1'},{'id': '179', 'type': 'binary_operator', 'children': ['180', '181'], 'value': '+'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '181', 'type': 'subscript', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '183', 'type': 'unary_operator', 'children': ['184'], 'value': '-'},{'id': '184', 'type': 'integer', 'children': [], 'value': '1'},{'id': '185', 'type': 'expression_statement', 'children': ['186']},{'id': '186', 'type': 'assignment', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '188', 'type': 'string', 'children': [], 'value': '""'},{'id': '189', 'type': 'continue_statement', 'children': []},{'id': '190', 'type': 'expression_statement', 'children': ['191']},{'id': '191', 'type': 'call', 'children': ['192', '195']},{'id': '192', 'type': 'attribute', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '195', 'type': 'argument_list', 'children': ['196']},{'id': '196', 'type': 'binary_operator', 'children': ['197', '198'], 'value': '+'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'grapheme'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '202', 'type': 'string', 'children': [], 'value': '""'},{'id': '203', 'type': 'expression_statement', 'children': ['204']},{'id': '204', 'type': 'assignment', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'segments'},{'id': '206', 'type': 'subscript', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '208', 'type': 'slice', 'children': ['209', '210', '211']},{'id': '209', 'type': 'colon', 'children': []},{'id': '210', 'type': 'colon', 'children': []},{'id': '211', 'type': 'unary_operator', 'children': ['212'], 'value': '-'},{'id': '212', 'type': 'integer', 'children': [], 'value': '1'},{'id': '213', 'type': 'expression_statement', 'children': ['214']},{'id': '214', 'type': 'assignment', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '216', 'type': 'integer', 'children': [], 'value': '0'},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'assignment', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '220', 'type': 'list', 'children': [], 'value': '[]'},{'id': '221', 'type': 'while_statement', 'children': ['222', '228']},{'id': '222', 'type': 'comparison_operator', 'children': ['223', '224'], 'value': '<'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '224', 'type': 'call', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '226', 'type': 'argument_list', 'children': ['227']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'segments'},{'id': '228', 'type': 'block', 'children': ['229']},{'id': '229', 'type': 'if_statement', 'children': ['230', '243', '263']},{'id': '230', 'type': 'comparison_operator', 'children': ['231', '240'], 'value': 'in'},{'id': '231', 'type': 'call', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'ord'},{'id': '233', 'type': 'argument_list', 'children': ['234']},{'id': '234', 'type': 'subscript', 'children': ['235', '238']},{'id': '235', 'type': 'subscript', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'segments'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '238', 'type': 'unary_operator', 'children': ['239'], 'value': '-'},{'id': '239', 'type': 'integer', 'children': [], 'value': '1'},{'id': '240', 'type': 'list', 'children': ['241', '242'], 'value': '[865, 860]'},{'id': '241', 'type': 'integer', 'children': [], 'value': '865'},{'id': '242', 'type': 'integer', 'children': [], 'value': '860'},{'id': '243', 'type': 'block', 'children': ['244', '259']},{'id': '244', 'type': 'expression_statement', 'children': ['245']},{'id': '245', 'type': 'call', 'children': ['246', '249']},{'id': '246', 'type': 'attribute', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '249', 'type': 'argument_list', 'children': ['250']},{'id': '250', 'type': 'binary_operator', 'children': ['251', '254'], 'value': '+'},{'id': '251', 'type': 'subscript', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'segments'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '254', 'type': 'subscript', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'segments'},{'id': '256', 'type': 'binary_operator', 'children': ['257', '258'], 'value': '+'},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '258', 'type': 'integer', 'children': [], 'value': '1'},{'id': '259', 'type': 'expression_statement', 'children': ['260']},{'id': '260', 'type': 'augmented_assignment', 'children': ['261', '262'], 'value': '+='},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '262', 'type': 'integer', 'children': [], 'value': '2'},{'id': '263', 'type': 'else_clause', 'children': ['264']},{'id': '264', 'type': 'block', 'children': ['265', '274']},{'id': '265', 'type': 'expression_statement', 'children': ['266']},{'id': '266', 'type': 'call', 'children': ['267', '270']},{'id': '267', 'type': 'attribute', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '270', 'type': 'argument_list', 'children': ['271']},{'id': '271', 'type': 'subscript', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'segments'},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '274', 'type': 'expression_statement', 'children': ['275']},{'id': '275', 'type': 'augmented_assignment', 'children': ['276', '277'], 'value': '+='},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '277', 'type': 'integer', 'children': [], 'value': '1'},{'id': '278', 'type': 'return_statement', 'children': ['279']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'r'} | def combine_modifiers(self, graphemes):
result = []
temp = ""
count = len(graphemes)
for grapheme in reversed(graphemes):
count -= 1
if len(grapheme) == 1 and unicodedata.category(grapheme) == "Lm" \
and not ord(grapheme) in [712, 716]:
temp = grapheme + temp
if count == 0:
result[-1] = temp + result[-1]
continue
if len(grapheme) == 1 and ord(grapheme) in [712, 716]:
result[-1] = grapheme + result[-1]
temp = ""
continue
if len(grapheme) == 1 and unicodedata.category(grapheme) == "Sk":
if len(result) == 0:
result.append(grapheme)
temp = ""
continue
else:
if unicodedata.category(result[-1][0]) == "Sk":
result[-1] = grapheme + result[-1]
temp = ""
continue
result.append(grapheme + temp)
temp = ""
segments = result[::-1]
i = 0
r = []
while i < len(segments):
if ord(segments[i][-1]) in [865, 860]:
r.append(segments[i] + segments[i + 1])
i += 2
else:
r.append(segments[i])
i += 1
return r |
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'type': 'block', 'children': ['15', '22', '29', '36']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'mm'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'count_mismatches'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'read'},{'id': '22', 'type': 'if_statement', 'children': ['23', '26']},{'id': '23', 'type': 'comparison_operator', 'children': ['24', '25'], 'value': 'is'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'mm'},{'id': '25', 'type': 'False', 'children': []},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'return_statement', 'children': ['28']},{'id': '28', 'type': 'False', 'children': []},{'id': '29', 'type': 'if_statement', 'children': ['30', '33']},{'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': 'is'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'mismatches'},{'id': '32', 'type': 'False', 'children': []},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'return_statement', 'children': ['35']},{'id': '35', 'type': 'True', 'children': []},{'id': '36', 'type': 'if_statement', 'children': ['37', '40']},{'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': '<='},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'mm'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'mismatches'},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'return_statement', 'children': ['42']},{'id': '42', 'type': 'True', 'children': []},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'assignment', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'r_mm'},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'count_mismatches'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'read'},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'p_mm'},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'count_mismatches'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '57', 'type': 'if_statement', 'children': ['58', '65']},{'id': '58', 'type': 'boolean_operator', 'children': ['59', '62'], 'value': 'and'},{'id': '59', 'type': 'comparison_operator', 'children': ['60', '61'], 'value': 'is'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'r_mm'},{'id': '61', 'type': 'False', 'children': []},{'id': '62', 'type': 'comparison_operator', 'children': ['63', '64'], 'value': 'is'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'p_mm'},{'id': '64', 'type': 'False', 'children': []},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'return_statement', 'children': ['67']},{'id': '67', 'type': 'False', 'children': []},{'id': '68', 'type': 'if_statement', 'children': ['69', '72']},{'id': '69', 'type': 'comparison_operator', 'children': ['70', '71'], 'value': 'is'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'mismatches'},{'id': '71', 'type': 'False', 'children': []},{'id': '72', 'type': 'block', 'children': ['73']},{'id': '73', 'type': 'return_statement', 'children': ['74']},{'id': '74', 'type': 'True', 'children': []},{'id': '75', 'type': 'if_statement', 'children': ['76', '79']},{'id': '76', 'type': 'comparison_operator', 'children': ['77', '78'], 'value': 'is'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'req_map'},{'id': '78', 'type': 'True', 'children': []},{'id': '79', 'type': 'block', 'children': ['80']},{'id': '80', 'type': 'if_statement', 'children': ['81', '88']},{'id': '81', 'type': 'boolean_operator', 'children': ['82', '85'], 'value': 'or'},{'id': '82', 'type': 'comparison_operator', 'children': ['83', '84'], 'value': 'is'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'r_mm'},{'id': '84', 'type': 'False', 'children': []},{'id': '85', 'type': 'comparison_operator', 'children': ['86', '87'], 'value': 'is'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'p_mm'},{'id': '87', 'type': 'False', 'children': []},{'id': '88', 'type': 'block', 'children': ['89']},{'id': '89', 'type': 'return_statement', 'children': ['90']},{'id': '90', 'type': 'False', 'children': []},{'id': '91', 'type': 'if_statement', 'children': ['92', '95']},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '94'], 'value': '=='},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'mm_option'},{'id': '94', 'type': 'string', 'children': [], 'value': "'one'"},{'id': '95', 'type': 'block', 'children': ['96']},{'id': '96', 'type': 'if_statement', 'children': ['97', '114']},{'id': '97', 'type': 'boolean_operator', 'children': ['98', '106'], 'value': 'or'},{'id': '98', 'type': '()', 'children': ['99']},{'id': '99', 'type': 'boolean_operator', 'children': ['100', '103'], 'value': 'and'},{'id': '100', 'type': 'comparison_operator', 'children': ['101', '102'], 'value': 'is'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'r_mm'},{'id': '102', 'type': 'False', 'children': []},{'id': '103', 'type': 'comparison_operator', 'children': ['104', '105'], 'value': '<='},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'r_mm'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'mismatches'},{'id': '106', 'type': '()', 'children': ['107']},{'id': '107', 'type': 'boolean_operator', 'children': ['108', '111'], 'value': 'and'},{'id': '108', 'type': 'comparison_operator', 'children': ['109', '110'], 'value': 'is'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'p_mm'},{'id': '110', 'type': 'False', 'children': []},{'id': '111', 'type': 'comparison_operator', 'children': ['112', '113'], 'value': '<='},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'p_mm'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'mismatches'},{'id': '114', 'type': 'block', 'children': ['115']},{'id': '115', 'type': 'return_statement', 'children': ['116']},{'id': '116', 'type': 'True', 'children': []},{'id': '117', 'type': 'if_statement', 'children': ['118', '121']},{'id': '118', 'type': 'comparison_operator', 'children': ['119', '120'], 'value': '=='},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'mm_option'},{'id': '120', 'type': 'string', 'children': [], 'value': "'both'"},{'id': '121', 'type': 'block', 'children': ['122']},{'id': '122', 'type': 'if_statement', 'children': ['123', '126', '134', '146']},{'id': '123', 'type': 'comparison_operator', 'children': ['124', '125'], 'value': 'is'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'r_mm'},{'id': '125', 'type': 'False', 'children': []},{'id': '126', 'type': 'block', 'children': ['127']},{'id': '127', 'type': 'if_statement', 'children': ['128', '131']},{'id': '128', 'type': 'comparison_operator', 'children': ['129', '130'], 'value': '<='},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'p_mm'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'mismatches'},{'id': '131', 'type': 'block', 'children': ['132']},{'id': '132', 'type': 'return_statement', 'children': ['133']},{'id': '133', 'type': 'True', 'children': []},{'id': '134', 'type': 'elif_clause', 'children': ['135', '138']},{'id': '135', 'type': 'comparison_operator', 'children': ['136', '137'], 'value': 'is'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'p_mm'},{'id': '137', 'type': 'False', 'children': []},{'id': '138', 'type': 'block', 'children': ['139']},{'id': '139', 'type': 'if_statement', 'children': ['140', '143']},{'id': '140', 'type': 'comparison_operator', 'children': ['141', '142'], 'value': '<='},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'r_mm'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'mismatches'},{'id': '143', 'type': 'block', 'children': ['144']},{'id': '144', 'type': 'return_statement', 'children': ['145']},{'id': '145', 'type': 'True', 'children': []},{'id': '146', 'type': 'elif_clause', 'children': ['147', '164']},{'id': '147', 'type': 'boolean_operator', 'children': ['148', '156'], 'value': 'and'},{'id': '148', 'type': '()', 'children': ['149']},{'id': '149', 'type': 'boolean_operator', 'children': ['150', '153'], 'value': 'and'},{'id': '150', 'type': 'comparison_operator', 'children': ['151', '152'], 'value': 'is'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'r_mm'},{'id': '152', 'type': 'False', 'children': []},{'id': '153', 'type': 'comparison_operator', 'children': ['154', '155'], 'value': '<='},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'r_mm'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'mismatches'},{'id': '156', 'type': '()', 'children': ['157']},{'id': '157', 'type': 'boolean_operator', 'children': ['158', '161'], 'value': 'and'},{'id': '158', 'type': 'comparison_operator', 'children': ['159', '160'], 'value': 'is'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'p_mm'},{'id': '160', 'type': 'False', 'children': []},{'id': '161', 'type': 'comparison_operator', 'children': ['162', '163'], 'value': '<='},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'p_mm'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'mismatches'},{'id': '164', 'type': 'block', 'children': ['165']},{'id': '165', 'type': 'return_statement', 'children': ['166']},{'id': '166', 'type': 'True', 'children': []},{'id': '167', 'type': 'return_statement', 'children': ['168']},{'id': '168', 'type': 'False', 'children': []} | def check_mismatches(read, pair, mismatches, mm_option, req_map):
if pair is False:
mm = count_mismatches(read)
if mm is False:
return False
if mismatches is False:
return True
if mm <= mismatches:
return True
r_mm = count_mismatches(read)
p_mm = count_mismatches(pair)
if r_mm is False and p_mm is False:
return False
if mismatches is False:
return True
if req_map is True:
if r_mm is False or p_mm is False:
return False
if mm_option == 'one':
if (r_mm is not False and r_mm <= mismatches) or (p_mm is not False and p_mm <= mismatches):
return True
if mm_option == 'both':
if r_mm is False:
if p_mm <= mismatches:
return True
elif p_mm is False:
if r_mm <= mismatches:
return True
elif (r_mm is not False and r_mm <= mismatches) and (p_mm is not False and p_mm <= mismatches):
return True
return False |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_steam'},{'id': '3', 'type': 'parameters', 'children': []},{'id': '4', 'type': 'block', 'children': ['5', '25', '33', '47', '61', '84']},{'id': '5', 'type': 'expression_statement', 'children': ['6']},{'id': '6', 'type': 'assignment', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'helper'},{'id': '8', 'type': 'lambda', 'children': ['9', '11']},{'id': '9', 'type': 'lambda_parameters', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'udd'},{'id': '11', 'type': 'conditional_expression', 'children': ['12', '16', '24'], 'value': 'if'},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'Steam'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'udd'},{'id': '16', 'type': 'call', 'children': ['17', '22']},{'id': '17', 'type': 'attribute', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'exists'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'udd'},{'id': '24', 'type': 'None', 'children': []},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'plat'},{'id': '28', 'type': 'call', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'platform'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'system'},{'id': '32', 'type': 'argument_list', 'children': []},{'id': '33', 'type': 'if_statement', 'children': ['34', '37']},{'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': '=='},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'plat'},{'id': '36', 'type': 'string', 'children': [], 'value': "'Darwin'"},{'id': '37', 'type': 'block', 'children': ['38']},{'id': '38', 'type': 'return_statement', 'children': ['39']},{'id': '39', 'type': 'call', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'helper'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'paths'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'default_osx_userdata_path'},{'id': '46', 'type': 'argument_list', 'children': []},{'id': '47', 'type': 'if_statement', 'children': ['48', '51']},{'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': '=='},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'plat'},{'id': '50', 'type': 'string', 'children': [], 'value': "'Linux'"},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'return_statement', 'children': ['53']},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'helper'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'paths'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'default_linux_userdata_path'},{'id': '60', 'type': 'argument_list', 'children': []},{'id': '61', 'type': 'if_statement', 'children': ['62', '65']},{'id': '62', 'type': 'comparison_operator', 'children': ['63', '64'], 'value': '=='},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'plat'},{'id': '64', 'type': 'string', 'children': [], 'value': "'Windows'"},{'id': '65', 'type': 'block', 'children': ['66', '74']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'possible_dir'},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'winutils'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'find_userdata_directory'},{'id': '73', 'type': 'argument_list', 'children': []},{'id': '74', 'type': 'return_statement', 'children': ['75']},{'id': '75', 'type': 'conditional_expression', 'children': ['76', '80', '83'], 'value': 'if'},{'id': '76', 'type': 'call', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'helper'},{'id': '78', 'type': 'argument_list', 'children': ['79']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'possible_dir'},{'id': '80', 'type': 'comparison_operator', 'children': ['81', '82'], 'value': 'is'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'possible_dir'},{'id': '82', 'type': 'None', 'children': []},{'id': '83', 'type': 'None', 'children': []},{'id': '84', 'type': 'return_statement', 'children': ['85']},{'id': '85', 'type': 'None', 'children': []} | def get_steam():
helper = lambda udd: Steam(udd) if os.path.exists(udd) else None
plat = platform.system()
if plat == 'Darwin':
return helper(paths.default_osx_userdata_path())
if plat == 'Linux':
return helper(paths.default_linux_userdata_path())
if plat == 'Windows':
possible_dir = winutils.find_userdata_directory()
return helper(possible_dir) if possible_dir is not None else None
return None |
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'identifier', 'children': [], 'value': 'i'},{'id': '15', 'type': 'block', 'children': ['16']},{'id': '16', 'type': 'return_statement', 'children': ['17']},{'id': '17', 'type': 'binary_operator', 'children': ['18', '25'], 'value': '+'},{'id': '18', 'type': 'binary_operator', 'children': ['19', '24'], 'value': '+'},{'id': '19', 'type': 'subscript', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '21', 'type': 'slice', 'children': ['22', '23']},{'id': '22', 'type': 'colon', 'children': []},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '25', 'type': '()', 'children': ['26']},{'id': '26', 'type': 'conditional_expression', 'children': ['27', '34', '38'], 'value': 'if'},{'id': '27', 'type': 'subscript', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '29', 'type': 'slice', 'children': ['30', '33']},{'id': '30', 'type': 'binary_operator', 'children': ['31', '32'], 'value': '+'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '32', 'type': 'integer', 'children': [], 'value': '1'},{'id': '33', 'type': 'colon', 'children': []},{'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': '<'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '36', 'type': 'unary_operator', 'children': ['37'], 'value': '-'},{'id': '37', 'type': 'integer', 'children': [], 'value': '1'},{'id': '38', 'type': 'string', 'children': [], 'value': "''"},{'id': '39', 'type': 'function_definition', 'children': ['40', '41', '42']},{'id': '40', 'type': 'function_name', 'children': [], 'value': 'rand_base'},{'id': '41', 'type': 'parameters', 'children': []},{'id': '42', 'type': 'block', 'children': ['43']},{'id': '43', 'type': 'return_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'random'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'choice'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'list', 'children': ['50', '51', '52', '53'], 'value': "['A', 'T', 'C', 'G']"},{'id': '50', 'type': 'string', 'children': [], 'value': "'A'"},{'id': '51', 'type': 'string', 'children': [], 'value': "'T'"},{'id': '52', 'type': 'string', 'children': [], 'value': "'C'"},{'id': '53', 'type': 'string', 'children': [], 'value': "'G'"},{'id': '54', 'type': 'function_definition', 'children': ['55', '56', '58']},{'id': '55', 'type': 'function_name', 'children': [], 'value': 'rand_seq'},{'id': '56', 'type': 'parameters', 'children': ['57']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '58', 'type': 'block', 'children': ['59']},{'id': '59', 'type': 'return_statement', 'children': ['60']},{'id': '60', 'type': 'call', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'string', 'children': [], 'value': "''"},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'list_comprehension', 'children': ['66', '69']},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'rand_base'},{'id': '68', 'type': 'argument_list', 'children': []},{'id': '69', 'type': 'for_in_clause', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'hpf'},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'compile'},{'id': '82', 'type': 'argument_list', 'children': ['83', '84']},{'id': '83', 'type': 'string', 'children': [], 'value': "'aaaa|cccc|gggg|tttt'"},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'IGNORECASE'},{'id': '87', 'type': 'while_statement', 'children': ['88', '89']},{'id': '88', 'type': 'True', 'children': []},{'id': '89', 'type': 'block', 'children': ['90', '98']},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'assignment', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '93', 'type': 'list', 'children': ['94'], 'value': '[rand_seq(codeLen)]'},{'id': '94', 'type': 'call', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'rand_seq'},{'id': '96', 'type': 'argument_list', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'codeLen'},{'id': '98', 'type': 'if_statement', 'children': ['99', '110']},{'id': '99', 'type': '()', 'children': ['100']},{'id': '100', 'type': 'comparison_operator', 'children': ['101', '109'], 'value': 'is'},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'hpf'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'subscript', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '108', 'type': 'integer', 'children': [], 'value': '0'},{'id': '109', 'type': 'None', 'children': []},{'id': '110', 'type': 'block', 'children': ['111']},{'id': '111', 'type': 'break_statement', 'children': []},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '115', 'type': 'integer', 'children': [], 'value': '0'},{'id': '116', 'type': 'while_statement', 'children': ['117', '123']},{'id': '117', 'type': 'comparison_operator', 'children': ['118', '122'], 'value': '<'},{'id': '118', 'type': 'call', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '120', 'type': 'argument_list', 'children': ['121']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'nIds'},{'id': '123', 'type': 'block', 'children': ['124', '128', '182']},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'augmented_assignment', 'children': ['126', '127'], 'value': '-='},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '127', 'type': 'integer', 'children': [], 'value': '1'},{'id': '128', 'type': 'if_statement', 'children': ['129', '133', '149']},{'id': '129', 'type': 'comparison_operator', 'children': ['130', '131'], 'value': '<'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '131', 'type': 'unary_operator', 'children': ['132'], 'value': '-'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'codeLen'},{'id': '133', 'type': 'block', 'children': ['134', '139']},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '137', 'type': 'unary_operator', 'children': ['138'], 'value': '-'},{'id': '138', 'type': 'integer', 'children': [], 'value': '1'},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'call', 'children': ['141', '144']},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'call', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'rand_seq'},{'id': '147', 'type': 'argument_list', 'children': ['148']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'codeLen'},{'id': '149', 'type': 'else_clause', 'children': ['150']},{'id': '150', 'type': 'block', 'children': ['151', '165']},{'id': '151', 'type': 'expression_statement', 'children': ['152']},{'id': '152', 'type': 'assignment', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'nc'},{'id': '154', 'type': 'call', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'next_code'},{'id': '156', 'type': 'argument_list', 'children': ['157', '160', '164']},{'id': '157', 'type': 'call', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'rand_base'},{'id': '159', 'type': 'argument_list', 'children': []},{'id': '160', 'type': 'subscript', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '162', 'type': 'unary_operator', 'children': ['163'], 'value': '-'},{'id': '163', 'type': 'integer', 'children': [], 'value': '1'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '165', 'type': 'if_statement', 'children': ['166', '174']},{'id': '166', 'type': 'comparison_operator', 'children': ['167', '173'], 'value': 'is'},{'id': '167', 'type': 'call', 'children': ['168', '171']},{'id': '168', 'type': 'attribute', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'hpf'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '171', 'type': 'argument_list', 'children': ['172']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'nc'},{'id': '173', 'type': 'None', 'children': []},{'id': '174', 'type': 'block', 'children': ['175']},{'id': '175', 'type': 'expression_statement', 'children': ['176']},{'id': '176', 'type': 'call', 'children': ['177', '180']},{'id': '177', 'type': 'attribute', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '180', 'type': 'argument_list', 'children': ['181']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'nc'},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '185', 'type': 'call', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '187', 'type': 'argument_list', 'children': ['188']},{'id': '188', 'type': 'call', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '190', 'type': 'argument_list', 'children': ['191']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '192', 'type': 'return_statement', 'children': ['193']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'codes'} | def generate_barcodes(nIds, codeLen=12):
def next_code(b, c, i):
return c[:i] + b + (c[i+1:] if i < -1 else '')
def rand_base():
return random.choice(['A', 'T', 'C', 'G'])
def rand_seq(n):
return ''.join([rand_base() for _ in range(n)])
hpf = re.compile('aaaa|cccc|gggg|tttt', re.IGNORECASE)
while True:
codes = [rand_seq(codeLen)]
if (hpf.search(codes[0]) is None):
break
idx = 0
while len(codes) < nIds:
idx -= 1
if idx < -codeLen:
idx = -1
codes.append(rand_seq(codeLen))
else:
nc = next_code(rand_base(), codes[-1], idx)
if hpf.search(nc) is None:
codes.append(nc)
codes = list(set(codes))
return codes |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'ERROR', 'children': ['2']},{'id': '2', 'type': 'function_definition', 'children': ['3', '4', '8']},{'id': '3', 'type': 'function_name', 'children': [], 'value': 'parse_fasta_annotations'},{'id': '4', 'type': 'parameters', 'children': ['5', '6', '7']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'fastas'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'annot_tables'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'trans_table'},{'id': '8', 'type': 'block', 'children': ['9', '57', '215', '235', '246', '260', '277']},{'id': '9', 'type': 'if_statement', 'children': ['10', '13']},{'id': '10', 'type': 'comparison_operator', 'children': ['11', '12'], 'value': 'is'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'annot_tables'},{'id': '12', 'type': 'False', 'children': []},{'id': '13', 'type': 'block', 'children': ['14', '18']},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'annots'},{'id': '17', 'type': 'dictionary', 'children': []},{'id': '18', 'type': 'for_statement', 'children': ['19', '20', '21']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'annot_tables'},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'for_statement', 'children': ['23', '24', '28']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'cds'},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '28', 'type': 'block', 'children': ['29', '45']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '36']},{'id': '31', 'type': 'pattern_list', 'children': ['32', '33', '34', '35']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '36', 'type': 'call', 'children': ['37', '44']},{'id': '37', 'type': 'attribute', 'children': ['38', '43']},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'cds'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '42', 'type': 'argument_list', 'children': []},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '44', 'type': 'argument_list', 'children': []},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '50']},{'id': '47', 'type': 'subscript', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'annots'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '50', 'type': 'list', 'children': ['51', '52', '53'], 'value': '[start, end, int(strand)]'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '57', 'type': 'for_statement', 'children': ['58', '59', '60', '203', '208']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'fasta'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'fastas'},{'id': '60', 'type': 'ERROR', 'children': ['61', '160', '179', '180', '182', '183', '185', '191', '197', '200']},{'id': '61', 'type': 'for_statement', 'children': ['62', '63', '67', '78', '131']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'parse_fasta'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'fasta'},{'id': '67', 'type': 'ERROR', 'children': ['68', '73']},{'id': '68', 'type': 'call', 'children': ['69', '70', '72']},{'id': '69', 'type': 'string', 'children': [], 'value': "'\n print('"},{'id': '70', 'type': 'ERROR', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'exit'},{'id': '72', 'type': 'argument_list', 'children': []},{'id': '73', 'type': 'comparison_operator', 'children': ['74', '75'], 'value': 'in'},{'id': '74', 'type': 'string', 'children': [], 'value': "'ID='"},{'id': '75', 'type': 'subscript', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '77', 'type': 'integer', 'children': [], 'value': '0'},{'id': '78', 'type': 'block', 'children': ['79', '101']},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '82', 'type': 'subscript', 'children': ['83', '100']},{'id': '83', 'type': 'call', 'children': ['84', '97']},{'id': '84', 'type': 'attribute', 'children': ['85', '96']},{'id': '85', 'type': 'subscript', 'children': ['86', '95']},{'id': '86', 'type': 'call', 'children': ['87', '92']},{'id': '87', 'type': 'attribute', 'children': ['88', '91']},{'id': '88', 'type': 'subscript', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '90', 'type': 'integer', 'children': [], 'value': '0'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '92', 'type': 'argument_list', 'children': ['93', '94']},{'id': '93', 'type': 'string', 'children': [], 'value': "'ID='"},{'id': '94', 'type': 'integer', 'children': [], 'value': '1'},{'id': '95', 'type': 'integer', 'children': [], 'value': '1'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '97', 'type': 'argument_list', 'children': ['98', '99']},{'id': '98', 'type': 'string', 'children': [], 'value': "';'"},{'id': '99', 'type': 'integer', 'children': [], 'value': '1'},{'id': '100', 'type': 'integer', 'children': [], 'value': '0'},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'assignment', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'contig'},{'id': '104', 'type': 'subscript', 'children': ['105', '130']},{'id': '105', 'type': 'call', 'children': ['106', '124']},{'id': '106', 'type': 'attribute', 'children': ['107', '123']},{'id': '107', 'type': 'subscript', 'children': ['108', '122']},{'id': '108', 'type': 'call', 'children': ['109', '120']},{'id': '109', 'type': 'attribute', 'children': ['110', '119']},{'id': '110', 'type': 'subscript', 'children': ['111', '118']},{'id': '111', 'type': 'call', 'children': ['112', '117']},{'id': '112', 'type': 'attribute', 'children': ['113', '116']},{'id': '113', 'type': 'subscript', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '115', 'type': 'integer', 'children': [], 'value': '0'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '117', 'type': 'argument_list', 'children': []},{'id': '118', 'type': 'integer', 'children': [], 'value': '0'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '120', 'type': 'argument_list', 'children': ['121']},{'id': '121', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '122', 'type': 'integer', 'children': [], 'value': '1'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '124', 'type': 'argument_list', 'children': ['125', '129']},{'id': '125', 'type': 'binary_operator', 'children': ['126', '127'], 'value': '%'},{'id': '126', 'type': 'string', 'children': [], 'value': "'_%s'"},{'id': '127', 'type': '()', 'children': ['128']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'ID'},{'id': '129', 'type': 'integer', 'children': [], 'value': '1'},{'id': '130', 'type': 'integer', 'children': [], 'value': '0'},{'id': '131', 'type': 'else_clause', 'children': ['132']},{'id': '132', 'type': 'block', 'children': ['133']},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'contig'},{'id': '136', 'type': 'subscript', 'children': ['137', '159']},{'id': '137', 'type': 'call', 'children': ['138', '156']},{'id': '138', 'type': 'attribute', 'children': ['139', '155']},{'id': '139', 'type': 'subscript', 'children': ['140', '154']},{'id': '140', 'type': 'call', 'children': ['141', '152']},{'id': '141', 'type': 'attribute', 'children': ['142', '151']},{'id': '142', 'type': 'subscript', 'children': ['143', '150']},{'id': '143', 'type': 'call', 'children': ['144', '149']},{'id': '144', 'type': 'attribute', 'children': ['145', '148']},{'id': '145', 'type': 'subscript', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '147', 'type': 'integer', 'children': [], 'value': '0'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '149', 'type': 'argument_list', 'children': []},{'id': '150', 'type': 'integer', 'children': [], 'value': '0'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '154', 'type': 'integer', 'children': [], 'value': '1'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '156', 'type': 'argument_list', 'children': ['157', '158']},{'id': '157', 'type': 'string', 'children': [], 'value': "'_'"},{'id': '158', 'type': 'integer', 'children': [], 'value': '1'},{'id': '159', 'type': 'integer', 'children': [], 'value': '0'},{'id': '160', 'type': 'expression_statement', 'children': ['161']},{'id': '161', 'type': 'assignment', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'locus'},{'id': '163', 'type': 'subscript', 'children': ['164', '178']},{'id': '164', 'type': 'call', 'children': ['165', '176']},{'id': '165', 'type': 'attribute', 'children': ['166', '175']},{'id': '166', 'type': 'subscript', 'children': ['167', '174']},{'id': '167', 'type': 'call', 'children': ['168', '173']},{'id': '168', 'type': 'attribute', 'children': ['169', '172']},{'id': '169', 'type': 'subscript', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '171', 'type': 'integer', 'children': [], 'value': '0'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '173', 'type': 'argument_list', 'children': []},{'id': '174', 'type': 'integer', 'children': [], 'value': '0'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '176', 'type': 'argument_list', 'children': ['177']},{'id': '177', 'type': 'string', 'children': [], 'value': "'>'"},{'id': '178', 'type': 'integer', 'children': [], 'value': '1'},{'id': '179', 'type': 'string', 'children': [], 'value': "'\n info = seq[0].split('"},{'id': '180', 'type': 'ERROR', 'children': ['181']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '183', 'type': 'ERROR', 'children': ['184']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '185', 'type': 'call', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '187', 'type': 'argument_list', 'children': ['188']},{'id': '188', 'type': 'subscript', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '190', 'type': 'integer', 'children': [], 'value': '1'},{'id': '191', 'type': 'call', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '193', 'type': 'argument_list', 'children': ['194']},{'id': '194', 'type': 'subscript', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '196', 'type': 'integer', 'children': [], 'value': '2'},{'id': '197', 'type': 'subscript', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '199', 'type': 'integer', 'children': [], 'value': '3'},{'id': '200', 'type': 'comparison_operator', 'children': ['201', '202'], 'value': '=='},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '202', 'type': 'string', 'children': [], 'value': "'1'"},{'id': '203', 'type': 'block', 'children': ['204']},{'id': '204', 'type': 'expression_statement', 'children': ['205']},{'id': '205', 'type': 'assignment', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '207', 'type': 'integer', 'children': [], 'value': '1'},{'id': '208', 'type': 'else_clause', 'children': ['209']},{'id': '209', 'type': 'block', 'children': ['210']},{'id': '210', 'type': 'expression_statement', 'children': ['211']},{'id': '211', 'type': 'assignment', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '213', 'type': 'unary_operator', 'children': ['214'], 'value': '-'},{'id': '214', 'type': 'integer', 'children': [], 'value': '1'},{'id': '215', 'type': 'expression_statement', 'children': ['216']},{'id': '216', 'type': 'assignment', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'product'},{'id': '218', 'type': 'list', 'children': ['219'], 'value': "[''.join(info[4].split()[1:])]"},{'id': '219', 'type': 'call', 'children': ['220', '223']},{'id': '220', 'type': 'attribute', 'children': ['221', '222']},{'id': '221', 'type': 'string', 'children': [], 'value': "''"},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '223', 'type': 'argument_list', 'children': ['224']},{'id': '224', 'type': 'subscript', 'children': ['225', '232']},{'id': '225', 'type': 'call', 'children': ['226', '231']},{'id': '226', 'type': 'attribute', 'children': ['227', '230']},{'id': '227', 'type': 'subscript', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '229', 'type': 'integer', 'children': [], 'value': '4'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '231', 'type': 'argument_list', 'children': []},{'id': '232', 'type': 'slice', 'children': ['233', '234']},{'id': '233', 'type': 'integer', 'children': [], 'value': '1'},{'id': '234', 'type': 'colon', 'children': []},{'id': '235', 'type': 'expression_statement', 'children': ['236']},{'id': '236', 'type': 'assignment', 'children': ['237', '243']},{'id': '237', 'type': 'pattern_list', 'children': ['238', '239', '241', '242']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'else'},{'id': '239', 'type': 'ERROR', 'children': ['240']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '243', 'type': 'subscript', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'annots'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'locus'},{'id': '246', 'type': 'expression_statement', 'children': ['247']},{'id': '247', 'type': 'assignment', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'product'},{'id': '249', 'type': 'subscript', 'children': ['250', '259']},{'id': '250', 'type': 'call', 'children': ['251', '256']},{'id': '251', 'type': 'attribute', 'children': ['252', '255']},{'id': '252', 'type': 'subscript', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '254', 'type': 'integer', 'children': [], 'value': '0'},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '256', 'type': 'argument_list', 'children': ['257', '258']},{'id': '257', 'type': 'string', 'children': [], 'value': "' '"},{'id': '258', 'type': 'integer', 'children': [], 'value': '1'},{'id': '259', 'type': 'integer', 'children': [], 'value': '1'},{'id': '260', 'type': 'expression_statement', 'children': ['261']},{'id': '261', 'type': 'assignment', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '263', 'type': 'dictionary', 'children': ['264', '268', '274']},{'id': '264', 'type': 'pair', 'children': ['265', '266']},{'id': '265', 'type': 'string', 'children': [], 'value': "'transl_table'"},{'id': '266', 'type': 'list', 'children': ['267'], 'value': '[trans_table]'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'trans_table'},{'id': '268', 'type': 'pair', 'children': ['269', '270']},{'id': '269', 'type': 'string', 'children': [], 'value': "'translation'"},{'id': '270', 'type': 'list', 'children': ['271'], 'value': '[seq[1]]'},{'id': '271', 'type': 'subscript', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '273', 'type': 'integer', 'children': [], 'value': '1'},{'id': '274', 'type': 'pair', 'children': ['275', '276']},{'id': '275', 'type': 'string', 'children': [], 'value': "'product'"},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'product'},{'id': '277', 'type': 'expression_statement', 'children': ['278']},{'id': '278', 'type': 'yield', 'children': ['279']},{'id': '279', 'type': 'expression_list', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'contig'},{'id': '281', 'type': 'list', 'children': ['282', '283', '287'], 'value': '[locus, [start, end, strand], info]'},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'locus'},{'id': '283', 'type': 'list', 'children': ['284', '285', '286'], 'value': '[start, end, strand]'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'info'} | def parse_fasta_annotations(fastas, annot_tables, trans_table):
if annot_tables is not False:
annots = {}
for table in annot_tables:
for cds in open(table):
ID, start, end, strand = cds.strip().split()
annots[ID] = [start, end, int(strand)]
for fasta in fastas:
for seq in parse_fasta(fasta):
if ('
print('
exit()
if 'ID=' in seq[0]:
ID = seq[0].rsplit('ID=', 1)[1].split(';', 1)[0]
contig = seq[0].split()[0].split('>')[1].rsplit('_%s' % (ID), 1)[0]
else:
contig = seq[0].split()[0].split('>')[1].rsplit('_', 1)[0]
locus = seq[0].split()[0].split('>')[1]
if ('
info = seq[0].split('
start, end, strand = int(info[1]), int(info[2]), info[3]
if strand == '1':
strand = 1
else:
strand = -1
product = [''.join(info[4].split()[1:])]
else:
start, end, strand = annots[locus]
product = seq[0].split(' ', 1)[1]
info = {'transl_table':[trans_table], \
'translation':[seq[1]], \
'product':product}
yield contig, [locus, [start, end, strand], info] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'find_consensus'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '5', 'type': 'block', 'children': ['6', '15', '32', '75', '93', '123', '183', '189', '195']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'nucs'},{'id': '9', 'type': 'list', 'children': ['10', '11', '12', '13', '14'], 'value': "['A', 'T', 'G', 'C', 'N']"},{'id': '10', 'type': 'string', 'children': [], 'value': "'A'"},{'id': '11', 'type': 'string', 'children': [], 'value': "'T'"},{'id': '12', 'type': 'string', 'children': [], 'value': "'G'"},{'id': '13', 'type': 'string', 'children': [], 'value': "'C'"},{'id': '14', 'type': 'string', 'children': [], 'value': "'N'"},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'list_comprehension', 'children': ['22', '25', '28']},{'id': '22', 'type': 'subscript', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '25', 'type': 'for_in_clause', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'nucs'},{'id': '28', 'type': 'if_clause', 'children': ['29']},{'id': '29', 'type': 'comparison_operator', 'children': ['30', '31'], 'value': 'in'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '32', 'type': 'try_statement', 'children': ['33', '51']},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'top'},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'list_comprehension', 'children': ['41', '44', '47']},{'id': '41', 'type': 'subscript', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '44', 'type': 'for_in_clause', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'nucs'},{'id': '47', 'type': 'if_clause', 'children': ['48']},{'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': 'in'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '51', 'type': 'except_clause', 'children': ['52']},{'id': '52', 'type': 'block', 'children': ['53', '61', '67', '73']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '58']},{'id': '55', 'type': 'subscript', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '57', 'type': 'string', 'children': [], 'value': "'consensus'"},{'id': '58', 'type': 'tuple', 'children': ['59', '60']},{'id': '59', 'type': 'string', 'children': [], 'value': "'N'"},{'id': '60', 'type': 'string', 'children': [], 'value': "'n/a'"},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '66']},{'id': '63', 'type': 'subscript', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '65', 'type': 'string', 'children': [], 'value': "'consensus frequency'"},{'id': '66', 'type': 'string', 'children': [], 'value': "'n/a'"},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'assignment', 'children': ['69', '72']},{'id': '69', 'type': 'subscript', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '71', 'type': 'string', 'children': [], 'value': "'reference frequency'"},{'id': '72', 'type': 'string', 'children': [], 'value': "'n/a'"},{'id': '73', 'type': 'return_statement', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'top'},{'id': '78', 'type': 'list_comprehension', 'children': ['79', '84', '87']},{'id': '79', 'type': 'tuple', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '81', 'type': 'subscript', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '84', 'type': 'for_in_clause', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '87', 'type': 'if_clause', 'children': ['88']},{'id': '88', 'type': 'comparison_operator', 'children': ['89', '92'], 'value': '=='},{'id': '89', 'type': 'subscript', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'nuc'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'top'},{'id': '93', 'type': 'if_statement', 'children': ['94', '101', '110']},{'id': '94', 'type': 'comparison_operator', 'children': ['95', '100'], 'value': '=='},{'id': '95', 'type': 'subscript', 'children': ['96', '99']},{'id': '96', 'type': 'subscript', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'top'},{'id': '98', 'type': 'integer', 'children': [], 'value': '0'},{'id': '99', 'type': 'integer', 'children': [], 'value': '1'},{'id': '100', 'type': 'integer', 'children': [], 'value': '0'},{'id': '101', 'type': 'block', 'children': ['102']},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'assignment', 'children': ['104', '107']},{'id': '104', 'type': 'subscript', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '106', 'type': 'string', 'children': [], 'value': "'consensus'"},{'id': '107', 'type': 'tuple', 'children': ['108', '109']},{'id': '108', 'type': 'string', 'children': [], 'value': "'n/a'"},{'id': '109', 'type': 'integer', 'children': [], 'value': '0'},{'id': '110', 'type': 'else_clause', 'children': ['111']},{'id': '111', 'type': 'block', 'children': ['112']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '117']},{'id': '114', 'type': 'subscript', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '116', 'type': 'string', 'children': [], 'value': "'consensus'"},{'id': '117', 'type': 'call', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'random'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'choice'},{'id': '121', 'type': 'argument_list', 'children': ['122']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'top'},{'id': '123', 'type': 'if_statement', 'children': ['124', '127', '136']},{'id': '124', 'type': 'comparison_operator', 'children': ['125', '126'], 'value': '=='},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '126', 'type': 'integer', 'children': [], 'value': '0'},{'id': '127', 'type': 'block', 'children': ['128', '132']},{'id': '128', 'type': 'expression_statement', 'children': ['129']},{'id': '129', 'type': 'assignment', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'c_freq'},{'id': '131', 'type': 'string', 'children': [], 'value': "'n/a'"},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'ref_freq'},{'id': '135', 'type': 'string', 'children': [], 'value': "'n/a'"},{'id': '136', 'type': 'else_clause', 'children': ['137']},{'id': '137', 'type': 'block', 'children': ['138', '154']},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'c_freq'},{'id': '141', 'type': 'binary_operator', 'children': ['142', '150'], 'value': '/'},{'id': '142', 'type': 'call', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'subscript', 'children': ['146', '149']},{'id': '146', 'type': 'subscript', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '148', 'type': 'string', 'children': [], 'value': "'consensus'"},{'id': '149', 'type': 'integer', 'children': [], 'value': '1'},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '154', 'type': 'if_statement', 'children': ['155', '160', '165']},{'id': '155', 'type': 'comparison_operator', 'children': ['156', '159'], 'value': 'not'},{'id': '156', 'type': 'subscript', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '158', 'type': 'string', 'children': [], 'value': "'ref'"},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '160', 'type': 'block', 'children': ['161']},{'id': '161', 'type': 'expression_statement', 'children': ['162']},{'id': '162', 'type': 'assignment', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'ref_freq'},{'id': '164', 'type': 'integer', 'children': [], 'value': '0'},{'id': '165', 'type': 'else_clause', 'children': ['166']},{'id': '166', 'type': 'block', 'children': ['167']},{'id': '167', 'type': 'expression_statement', 'children': ['168']},{'id': '168', 'type': 'assignment', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'ref_freq'},{'id': '170', 'type': 'binary_operator', 'children': ['171', '179'], 'value': '/'},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'subscript', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '176', 'type': 'subscript', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '178', 'type': 'string', 'children': [], 'value': "'ref'"},{'id': '179', 'type': 'call', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '181', 'type': 'argument_list', 'children': ['182']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'assignment', 'children': ['185', '188']},{'id': '185', 'type': 'subscript', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '187', 'type': 'string', 'children': [], 'value': "'consensus frequency'"},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'c_freq'},{'id': '189', 'type': 'expression_statement', 'children': ['190']},{'id': '190', 'type': 'assignment', 'children': ['191', '194']},{'id': '191', 'type': 'subscript', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '193', 'type': 'string', 'children': [], 'value': "'reference frequency'"},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'ref_freq'},{'id': '195', 'type': 'return_statement', 'children': ['196']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'bases'} | def find_consensus(bases):
nucs = ['A', 'T', 'G', 'C', 'N']
total = sum([bases[nuc] for nuc in nucs if nuc in bases])
try:
top = max([bases[nuc] for nuc in nucs if nuc in bases])
except:
bases['consensus'] = ('N', 'n/a')
bases['consensus frequency'] = 'n/a'
bases['reference frequency'] = 'n/a'
return bases
top = [(nuc, bases[nuc]) for nuc in bases if bases[nuc] == top]
if top[0][1] == 0:
bases['consensus'] = ('n/a', 0)
else:
bases['consensus'] = random.choice(top)
if total == 0:
c_freq = 'n/a'
ref_freq = 'n/a'
else:
c_freq = float(bases['consensus'][1]) / float(total)
if bases['ref'] not in bases:
ref_freq = 0
else:
ref_freq = float(bases[bases['ref']]) / float(total)
bases['consensus frequency'] = c_freq
bases['reference frequency'] = ref_freq
return bases |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'print_consensus'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'genomes'},{'id': '5', 'type': 'block', 'children': ['6', '10', '128', '204']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'cons'},{'id': '9', 'type': 'dictionary', 'children': []},{'id': '10', 'type': 'for_statement', 'children': ['11', '14', '22']},{'id': '11', 'type': 'pattern_list', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'contigs'},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '16', 'type': 'argument_list', 'children': ['17']},{'id': '17', 'type': 'call', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'genomes'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '21', 'type': 'argument_list', 'children': []},{'id': '22', 'type': 'block', 'children': ['23', '29']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '28']},{'id': '25', 'type': 'subscript', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'cons'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '28', 'type': 'dictionary', 'children': []},{'id': '29', 'type': 'for_statement', 'children': ['30', '33', '41']},{'id': '30', 'type': 'pattern_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'contig'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'samples'},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'contigs'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '40', 'type': 'argument_list', 'children': []},{'id': '41', 'type': 'block', 'children': ['42']},{'id': '42', 'type': 'for_statement', 'children': ['43', '46', '54']},{'id': '43', 'type': 'pattern_list', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'stats'},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'samples'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '53', 'type': 'argument_list', 'children': []},{'id': '54', 'type': 'block', 'children': ['55', '70', '82']},{'id': '55', 'type': 'if_statement', 'children': ['56', '61']},{'id': '56', 'type': 'comparison_operator', 'children': ['57', '58'], 'value': 'not'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '58', 'type': 'subscript', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'cons'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '61', 'type': 'block', 'children': ['62']},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'assignment', 'children': ['64', '69']},{'id': '64', 'type': 'subscript', 'children': ['65', '68']},{'id': '65', 'type': 'subscript', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'cons'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '69', 'type': 'dictionary', 'children': []},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '73', 'type': 'assignment', 'children': ['74', '81']},{'id': '74', 'type': 'subscript', 'children': ['75', '80']},{'id': '75', 'type': 'subscript', 'children': ['76', '79']},{'id': '76', 'type': 'subscript', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'cons'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'contig'},{'id': '81', 'type': 'list', 'children': [], 'value': '[]'},{'id': '82', 'type': 'for_statement', 'children': ['83', '86', '93']},{'id': '83', 'type': 'pattern_list', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'ps'},{'id': '86', 'type': 'call', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '88', 'type': 'argument_list', 'children': ['89', '92']},{'id': '89', 'type': 'subscript', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'stats'},{'id': '91', 'type': 'string', 'children': [], 'value': "'bp_stats'"},{'id': '92', 'type': 'integer', 'children': [], 'value': '1'},{'id': '93', 'type': 'block', 'children': ['94', '108', '121']},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '99']},{'id': '96', 'type': 'pattern_list', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'consensus'},{'id': '99', 'type': 'expression_list', 'children': ['100', '103']},{'id': '100', 'type': 'subscript', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'ps'},{'id': '102', 'type': 'string', 'children': [], 'value': "'ref'"},{'id': '103', 'type': 'subscript', 'children': ['104', '107']},{'id': '104', 'type': 'subscript', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'ps'},{'id': '106', 'type': 'string', 'children': [], 'value': "'consensus'"},{'id': '107', 'type': 'integer', 'children': [], 'value': '0'},{'id': '108', 'type': 'if_statement', 'children': ['109', '112']},{'id': '109', 'type': 'comparison_operator', 'children': ['110', '111'], 'value': '=='},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'consensus'},{'id': '111', 'type': 'string', 'children': [], 'value': "'n/a'"},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'assignment', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'consensus'},{'id': '116', 'type': 'call', 'children': ['117', '120']},{'id': '117', 'type': 'attribute', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '120', 'type': 'argument_list', 'children': []},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'call', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'consensus'},{'id': '128', 'type': 'for_statement', 'children': ['129', '132', '137']},{'id': '129', 'type': 'pattern_list', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'samples'},{'id': '132', 'type': 'call', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'cons'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '136', 'type': 'argument_list', 'children': []},{'id': '137', 'type': 'block', 'children': ['138']},{'id': '138', 'type': 'for_statement', 'children': ['139', '142', '147']},{'id': '139', 'type': 'pattern_list', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'contigs'},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'samples'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '146', 'type': 'argument_list', 'children': []},{'id': '147', 'type': 'block', 'children': ['148', '156', '164', '198']},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'assignment', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '151', 'type': 'binary_operator', 'children': ['152', '153'], 'value': '%'},{'id': '152', 'type': 'string', 'children': [], 'value': "'%s.%s.consensus.fa'"},{'id': '153', 'type': 'tuple', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'assignment', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '159', 'type': 'call', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '161', 'type': 'argument_list', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '163', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '164', 'type': 'for_statement', 'children': ['165', '168', '173']},{'id': '165', 'type': 'pattern_list', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'contig'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '168', 'type': 'call', 'children': ['169', '172']},{'id': '169', 'type': 'attribute', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'contigs'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '172', 'type': 'argument_list', 'children': []},{'id': '173', 'type': 'block', 'children': ['174', '185']},{'id': '174', 'type': 'expression_statement', 'children': ['175']},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '177', 'type': 'argument_list', 'children': ['178', '182']},{'id': '178', 'type': 'binary_operator', 'children': ['179', '180'], 'value': '%'},{'id': '179', 'type': 'string', 'children': [], 'value': "'>%s'"},{'id': '180', 'type': '()', 'children': ['181']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'contig'},{'id': '182', 'type': 'keyword_argument', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '185', 'type': 'expression_statement', 'children': ['186']},{'id': '186', 'type': 'call', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '188', 'type': 'argument_list', 'children': ['189', '195']},{'id': '189', 'type': 'call', 'children': ['190', '193']},{'id': '190', 'type': 'attribute', 'children': ['191', '192']},{'id': '191', 'type': 'string', 'children': [], 'value': "''"},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '193', 'type': 'argument_list', 'children': ['194']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '195', 'type': 'keyword_argument', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '198', 'type': 'expression_statement', 'children': ['199']},{'id': '199', 'type': 'call', 'children': ['200', '203']},{'id': '200', 'type': 'attribute', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '203', 'type': 'argument_list', 'children': []},{'id': '204', 'type': 'return_statement', 'children': ['205']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'cons'} | def print_consensus(genomes):
cons = {}
for genome, contigs in list(genomes.items()):
cons[genome] = {}
for contig, samples in list(contigs.items()):
for sample, stats in list(samples.items()):
if sample not in cons[genome]:
cons[genome][sample] = {}
seq = cons[genome][sample][contig] = []
for pos, ps in enumerate(stats['bp_stats'], 1):
ref, consensus = ps['ref'], ps['consensus'][0]
if consensus == 'n/a':
consensus = ref.lower()
seq.append(consensus)
for genome, samples in cons.items():
for sample, contigs in samples.items():
fn = '%s.%s.consensus.fa' % (genome, sample)
f = open(fn, 'w')
for contig, seq in contigs.items():
print('>%s' % (contig), file = f)
print(''.join(seq), file = f)
f.close()
return cons |
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'for_statement', 'children': ['16', '17', '21']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'cov_table'},{'id': '21', 'type': 'block', 'children': ['22', '35', '126', '132', '155', '161']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '25', 'type': 'call', 'children': ['26', '33']},{'id': '26', 'type': 'attribute', 'children': ['27', '32']},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '31', 'type': 'argument_list', 'children': []},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '35', 'type': 'if_statement', 'children': ['36', '41', '124']},{'id': '36', 'type': 'attribute', 'children': ['37', '40']},{'id': '37', 'type': 'subscript', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '39', 'type': 'integer', 'children': [], 'value': '0'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '41', 'type': 'ERROR', 'children': ['42', '43', '76', '79', '80', '121']},{'id': '42', 'type': 'ERROR', 'children': []},{'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'samples'},{'id': '45', 'type': 'subscript', 'children': ['46', '51', '53']},{'id': '46', 'type': 'subscript', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '48', 'type': 'slice', 'children': ['49', '50']},{'id': '49', 'type': 'integer', 'children': [], 'value': '1'},{'id': '50', 'type': 'colon', 'children': []},{'id': '51', 'type': 'ERROR', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'samples'},{'id': '53', 'type': 'comparison_operator', 'children': ['54', '72', '75'], 'value': 'in'},{'id': '54', 'type': 'subscript', 'children': ['55', '71']},{'id': '55', 'type': 'call', 'children': ['56', '68']},{'id': '56', 'type': 'attribute', 'children': ['57', '67']},{'id': '57', 'type': 'subscript', 'children': ['58', '65']},{'id': '58', 'type': 'call', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '62', 'type': 'argument_list', 'children': ['63', '64']},{'id': '63', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '64', 'type': 'integer', 'children': [], 'value': '1'},{'id': '65', 'type': 'unary_operator', 'children': ['66'], 'value': '-'},{'id': '66', 'type': 'integer', 'children': [], 'value': '1'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '68', 'type': 'argument_list', 'children': ['69', '70']},{'id': '69', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '70', 'type': 'integer', 'children': [], 'value': '1'},{'id': '71', 'type': 'integer', 'children': [], 'value': '0'},{'id': '72', 'type': 'ERROR', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'for'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'samples'},{'id': '76', 'type': 'ERROR', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'continue'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'scaffold'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '80', 'type': 'subscript', 'children': ['81', '111', '113']},{'id': '81', 'type': 'subscript', 'children': ['82', '96', '98']},{'id': '82', 'type': 'call', 'children': ['83', '91', '94']},{'id': '83', 'type': 'call', 'children': ['84', '89']},{'id': '84', 'type': 'attribute', 'children': ['85', '88']},{'id': '85', 'type': 'subscript', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '87', 'type': 'integer', 'children': [], 'value': '0'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'string', 'children': [], 'value': "': '"},{'id': '91', 'type': 'ERROR', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '96', 'type': 'ERROR', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'covs'},{'id': '98', 'type': 'comparison_operator', 'children': ['99', '103', '106'], 'value': 'in'},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '103', 'type': 'ERROR', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'for'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '106', 'type': 'subscript', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '108', 'type': 'slice', 'children': ['109', '110']},{'id': '109', 'type': 'integer', 'children': [], 'value': '1'},{'id': '110', 'type': 'colon', 'children': []},{'id': '111', 'type': 'ERROR', 'children': ['112']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'bases'},{'id': '113', 'type': 'comparison_operator', 'children': ['114', '117', '120'], 'value': 'in'},{'id': '114', 'type': 'binary_operator', 'children': ['115', '116'], 'value': '*'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '117', 'type': 'ERROR', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'for'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'covs'},{'id': '121', 'type': 'comparison_operator', 'children': ['122', '123'], 'value': 'not'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'scaffold'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'scaffold2genome'},{'id': '124', 'type': 'block', 'children': ['125']},{'id': '125', 'type': 'continue_statement', 'children': []},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '129', 'type': 'subscript', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'scaffold2genome'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'scaffold'},{'id': '132', 'type': 'if_statement', 'children': ['133', '136']},{'id': '133', 'type': 'comparison_operator', 'children': ['134', '135'], 'value': 'not'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'size'},{'id': '136', 'type': 'block', 'children': ['137', '143']},{'id': '137', 'type': 'expression_statement', 'children': ['138']},{'id': '138', 'type': 'assignment', 'children': ['139', '142']},{'id': '139', 'type': 'subscript', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'size'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '142', 'type': 'integer', 'children': [], 'value': '0'},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'assignment', 'children': ['145', '148']},{'id': '145', 'type': 'subscript', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'mapped'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '148', 'type': 'dictionary_comprehension', 'children': ['149', '152']},{'id': '149', 'type': 'pair', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '151', 'type': 'integer', 'children': [], 'value': '0'},{'id': '152', 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'value': 'append'},{'id': '226', 'type': 'argument_list', 'children': ['227']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '228', 'type': 'expression_statement', 'children': ['229']},{'id': '229', 'type': 'call', 'children': ['230', '235']},{'id': '230', 'type': 'attribute', 'children': ['231', '234']},{'id': '231', 'type': 'subscript', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'coverage'},{'id': '233', 'type': 'string', 'children': [], 'value': "'genome size (bp)'"},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '235', 'type': 'argument_list', 'children': ['236']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'length'},{'id': '237', 'type': 'expression_statement', 'children': ['238']},{'id': '238', 'type': 'call', 'children': ['239', '244']},{'id': '239', 'type': 'attribute', 'children': ['240', '243']},{'id': '240', 'type': 'subscript', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'coverage'},{'id': '242', 'type': 'string', 'children': [], 'value': "'sample'"},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '244', 'type': 'argument_list', 'children': ['245']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '246', 'type': 'expression_statement', 'children': ['247']},{'id': '247', 'type': 'call', 'children': ['248', '253']},{'id': '248', 'type': 'attribute', 'children': ['249', '252']},{'id': '249', 'type': 'subscript', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'coverage'},{'id': '251', 'type': 'string', 'children': [], 'value': "'coverage'"},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '253', 'type': 'argument_list', 'children': ['254']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'cov'},{'id': '255', 'type': 'return_statement', 'children': ['256']},{'id': '256', 'type': 'call', 'children': ['257', '260']},{'id': '257', 'type': 'attribute', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'pd'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'DataFrame'},{'id': '260', 'type': 'argument_list', 'children': ['261']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'coverage'} | def parse_cov(cov_table, scaffold2genome):
size = {}
mapped = {}
for line in open(cov_table):
line = line.strip().split('\t')
if line[0].startswith('
samples = line[1:]
samples = [i.rsplit('/', 1)[-1].split('.', 1)[0] for i in samples]
continue
scaffold, length = line[0].split(': ')
length = float(length)
covs = [float(i) for i in line[1:]]
bases = [c * length for c in covs]
if scaffold not in scaffold2genome:
continue
genome = scaffold2genome[scaffold]
if genome not in size:
size[genome] = 0
mapped[genome] = {sample:0 for sample in samples}
size[genome] += length
for sample, count in zip(samples, bases):
mapped[genome][sample] += count
coverage = {'genome':[], 'genome size (bp)':[], 'sample':[], 'coverage':[]}
for genome, length in size.items():
for sample in samples:
cov = mapped[genome][sample] / length
coverage['genome'].append(genome)
coverage['genome size (bp)'].append(length)
coverage['sample'].append(sample)
coverage['coverage'].append(cov)
return pd.DataFrame(coverage) |
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'if_statement', 'children': ['122', '125', '130']},{'id': '122', 'type': 'comparison_operator', 'children': ['123', '124'], 'value': '=='},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'other'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'fasta'},{'id': '125', 'type': 'block', 'children': ['126']},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'percent'},{'id': '129', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '130', 'type': 'else_clause', 'children': ['131']},{'id': '131', 'type': 'block', 'children': ['132', '146', '168']},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'orthologs'},{'id': '135', 'type': 'call', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '137', 'type': 'argument_list', 'children': ['138']},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'subscript', 'children': ['142', '145']},{'id': '142', 'type': 'subscript', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'hits'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'fasta'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'other'},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'assignment', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'orfs'},{'id': '149', 'type': 'call', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '151', 'type': 'argument_list', 'children': ['152']},{'id': '152', 'type': 'call', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '154', 'type': 'argument_list', 'children': ['155']},{'id': '155', 'type': 'list_comprehension', 'children': ['156', '157', '160']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '157', 'type': 'for_in_clause', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'id2desc'},{'id': '160', 'type': 'if_clause', 'children': ['161']},{'id': '161', 'type': 'comparison_operator', 'children': ['162', '167'], 'value': '=='},{'id': '162', 'type': 'subscript', 'children': ['163', '166']},{'id': '163', 'type': 'subscript', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'id2desc'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '166', 'type': 'integer', 'children': [], 'value': '0'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'fasta'},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'assignment', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'percent'},{'id': '171', 'type': 'binary_operator', 'children': ['172', '178'], 'value': '*'},{'id': '172', 'type': 'call', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '174', 'type': 'argument_list', 'children': ['175']},{'id': '175', 'type': 'binary_operator', 'children': ['176', '177'], 'value': '/'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'orthologs'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'orfs'},{'id': '178', 'type': 'integer', 'children': [], 'value': '100'},{'id': '179', 'type': 'expression_statement', 'children': ['180']},{'id': '180', 'type': 'call', 'children': ['181', '184']},{'id': '181', 'type': 'attribute', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'call', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '187', 'type': 'argument_list', 'children': ['188']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'percent'},{'id': '189', 'type': 'expression_statement', 'children': ['190']},{'id': '190', 'type': 'call', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '192', 'type': 'argument_list', 'children': ['193', '199']},{'id': '193', 'type': 'call', 'children': ['194', '197']},{'id': '194', 'type': 'attribute', 'children': ['195', '196']},{'id': '195', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '197', 'type': 'argument_list', 'children': ['198']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '199', 'type': 'keyword_argument', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'out'} | def print_genome_matrix(hits, fastas, id2desc, file_name):
out = open(file_name, 'w')
fastas = sorted(fastas)
print('
print('
for fasta in fastas:
line = [fasta]
for other in fastas:
if other == fasta:
average = '-'
else:
average = numpy.average([hits[fasta][other][i][3] for i in hits[fasta][other]])
line.append(str(average))
print('\t'.join(line), file=out)
print('', file=out)
print('
print('
for fasta in fastas:
line = [fasta]
for other in fastas:
if other == fasta:
percent = '-'
else:
orthologs = float(len(hits[fasta][other]))
orfs = float(len([i for i in id2desc if id2desc[i][0] == fasta]))
percent = float(orthologs / orfs) * 100
line.append(str(percent))
print('\t'.join(line), file=out) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'ERROR', 'children': ['2', '298', '304']},{'id': '2', 'type': 'function_definition', 'children': ['3', '4', '17']},{'id': '3', 'type': 'function_name', 'children': [], 'value': 'calc_thresholds'},{'id': '4', 'type': 'parameters', 'children': ['5', '6', '7', '14']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'rbh'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'file_name'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'thresholds'},{'id': '9', 'type': 'list', 'children': ['10', '11', '12', '13'], 'value': '[False, False, False, False]'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'False', 'children': []},{'id': '12', 'type': 'False', 'children': []},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'stdevs'},{'id': '16', 'type': 'integer', 'children': [], 'value': '2'},{'id': '17', 'type': 'block', 'children': ['18', '25', '29', '70', '78', '84']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'calc_threshold'},{'id': '21', 'type': 'subscript', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'thresholds'},{'id': '23', 'type': 'unary_operator', 'children': ['24'], 'value': '-'},{'id': '24', 'type': 'integer', 'children': [], 'value': '1'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'norm_threshold'},{'id': '28', 'type': 'dictionary', 'children': []},{'id': '29', 'type': 'for_statement', 'children': ['30', '31', '42']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'permutations'},{'id': '35', 'type': 'argument_list', 'children': ['36', '41']},{'id': '36', 'type': 'list_comprehension', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '38', 'type': 'for_in_clause', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'rbh'},{'id': '41', 'type': 'integer', 'children': [], 'value': '2'},{'id': '42', 'type': 'block', 'children': ['43', '58']},{'id': '43', 'type': 'if_statement', 'children': ['44', '49']},{'id': '44', 'type': 'comparison_operator', 'children': ['45', '48'], 'value': 'not'},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '47', 'type': 'integer', 'children': [], 'value': '0'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'norm_threshold'},{'id': '49', 'type': 'block', 'children': ['50']},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '57']},{'id': '52', 'type': 'subscript', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'norm_threshold'},{'id': '54', 'type': 'subscript', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '56', 'type': 'integer', 'children': [], 'value': '0'},{'id': '57', 'type': 'dictionary', 'children': []},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '69']},{'id': '60', 'type': 'subscript', 'children': ['61', '66']},{'id': '61', 'type': 'subscript', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'norm_threshold'},{'id': '63', 'type': 'subscript', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '65', 'type': 'integer', 'children': [], 'value': '0'},{'id': '66', 'type': 'subscript', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '68', 'type': 'integer', 'children': [], 'value': '1'},{'id': '69', 'type': 'dictionary', 'children': []},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '75', 'type': 'argument_list', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'file_name'},{'id': '77', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'assignment', 'children': ['80', '81', '83']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '81', 'type': 'ERROR', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'comparisons'},{'id': '83', 'type': 'list', 'children': [], 'value': '[]'},{'id': '84', 'type': 'for_statement', 'children': ['85', '86', '87']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'rbh'},{'id': '87', 'type': 'block', 'children': ['88']},{'id': '88', 'type': 'for_statement', 'children': ['89', '90', '93']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'compare'},{'id': '90', 'type': 'subscript', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'rbh'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '93', 'type': 'block', 'children': ['94', '108', '114', '121', '140', '170', '179', '188', '197', '206', '215']},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '97', 'type': 'call', 'children': ['98', '101']},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'string', 'children': [], 'value': "''"},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': 'list', 'children': ['106', '107'], 'value': '[genome, compare]'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'compare'},{'id': '108', 'type': 'if_statement', 'children': ['109', '112']},{'id': '109', 'type': 'comparison_operator', 'children': ['110', '111'], 'value': 'in'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'comparisons'},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'continue_statement', 'children': []},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'comparisons'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'assignment', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'scores'},{'id': '124', 'type': 'dictionary', 'children': ['125', '128', '131', '134', '137']},{'id': '125', 'type': 'pair', 'children': ['126', '127']},{'id': '126', 'type': 'string', 'children': [], 'value': "'percent identity'"},{'id': '127', 'type': 'list', 'children': [], 'value': '[]'},{'id': '128', 'type': 'pair', 'children': ['129', '130']},{'id': '129', 'type': 'string', 'children': [], 'value': "'e-value'"},{'id': '130', 'type': 'list', 'children': [], 'value': '[]'},{'id': '131', 'type': 'pair', 'children': ['132', '133']},{'id': '132', 'type': 'string', 'children': [], 'value': "'bit score'"},{'id': '133', 'type': 'list', 'children': [], 'value': '[]'},{'id': '134', 'type': 'pair', 'children': ['135', '136']},{'id': '135', 'type': 'string', 'children': [], 'value': "'normalized bit score'"},{'id': '136', 'type': 'list', 'children': [], 'value': '[]'},{'id': '137', 'type': 'pair', 'children': ['138', '139']},{'id': '138', 'type': 'string', 'children': [], 'value': "'alignment length fraction'"},{'id': '139', 'type': 'list', 'children': [], 'value': '[]'},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '159']},{'id': '142', 'type': 'pattern_list', 'children': ['143', '144', '155', '156', '157', '158']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '144', 'type': 'ERROR', 'children': ['145', '147', '154']},{'id': '145', 'type': 'ERROR', 'children': ['146']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'for'},{'id': '147', 'type': 'comparison_operator', 'children': ['148', '149'], 'value': 'in'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '149', 'type': 'subscript', 'children': ['150', '153']},{'id': '150', 'type': 'subscript', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'rbh'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'compare'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'pident'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'length_fraction'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'norm_bit'},{'id': '159', 'type': 'subscript', 'children': ['160', '167']},{'id': '160', 'type': 'subscript', 'children': ['161', '166']},{'id': '161', 'type': 'subscript', 'children': ['162', '165']},{'id': '162', 'type': 'subscript', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'rbh'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'compare'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '167', 'type': 'slice', 'children': ['168', '169']},{'id': '168', 'type': 'integer', 'children': [], 'value': '3'},{'id': '169', 'type': 'colon', 'children': []},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '177']},{'id': '172', 'type': 'attribute', 'children': ['173', '176']},{'id': '173', 'type': 'subscript', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'scores'},{'id': '175', 'type': 'string', 'children': [], 'value': "'percent identity'"},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '177', 'type': 'argument_list', 'children': ['178']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'pident'},{'id': '179', 'type': 'expression_statement', 'children': ['180']},{'id': '180', 'type': 'call', 'children': ['181', '186']},{'id': '181', 'type': 'attribute', 'children': ['182', '185']},{'id': '182', 'type': 'subscript', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'scores'},{'id': '184', 'type': 'string', 'children': [], 'value': "'alignment length fraction'"},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '186', 'type': 'argument_list', 'children': ['187']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'length_fraction'},{'id': '188', 'type': 'expression_statement', 'children': ['189']},{'id': '189', 'type': 'call', 'children': ['190', '195']},{'id': '190', 'type': 'attribute', 'children': ['191', '194']},{'id': '191', 'type': 'subscript', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'scores'},{'id': '193', 'type': 'string', 'children': [], 'value': "'e-value'"},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '195', 'type': 'argument_list', 'children': ['196']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '197', 'type': 'expression_statement', 'children': ['198']},{'id': '198', 'type': 'call', 'children': ['199', '204']},{'id': '199', 'type': 'attribute', 'children': ['200', '203']},{'id': '200', 'type': 'subscript', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'scores'},{'id': '202', 'type': 'string', 'children': [], 'value': "'bit score'"},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '204', 'type': 'argument_list', 'children': ['205']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'bit'},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'call', 'children': ['208', '213']},{'id': '208', 'type': 'attribute', 'children': ['209', '212']},{'id': '209', 'type': 'subscript', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'scores'},{'id': '211', 'type': 'string', 'children': [], 'value': "'normalized bit score'"},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '213', 'type': 'argument_list', 'children': ['214']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'norm_bit'},{'id': '215', 'type': 'if_statement', 'children': ['216', '219', '287']},{'id': '216', 'type': 'comparison_operator', 'children': ['217', '218'], 'value': 'is'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'calc_threshold'},{'id': '218', 'type': 'True', 'children': []},{'id': '219', 'type': 'ERROR', 'children': ['220', '226', '235', '244', '253', '254', '256', '257', '262', '267', '269', '276', '277', '279']},{'id': '220', 'type': 'expression_statement', 'children': ['221']},{'id': '221', 'type': 'assignment', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'norms'},{'id': '223', 'type': 'subscript', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'scores'},{'id': '225', 'type': 'string', 'children': [], 'value': "'normalized bit score'"},{'id': '226', 'type': 'expression_statement', 'children': ['227']},{'id': '227', 'type': 'assignment', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'average'},{'id': '229', 'type': 'call', 'children': ['230', '233']},{'id': '230', 'type': 'attribute', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'average'},{'id': '233', 'type': 'argument_list', 'children': ['234']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'norms'},{'id': '235', 'type': 'expression_statement', 'children': ['236']},{'id': '236', 'type': 'assignment', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'std'},{'id': '238', 'type': 'call', 'children': ['239', '242']},{'id': '239', 'type': 'attribute', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'std'},{'id': '242', 'type': 'argument_list', 'children': ['243']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'norms'},{'id': '244', 'type': 'expression_statement', 'children': ['245']},{'id': '245', 'type': 'assignment', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'normal_thresh'},{'id': '247', 'type': 'binary_operator', 'children': ['248', '249'], 'value': '-'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'average'},{'id': '249', 'type': '()', 'children': ['250']},{'id': '250', 'type': 'binary_operator', 'children': ['251', '252'], 'value': '*'},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'std'},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'stdevs'},{'id': '253', 'type': 'string', 'children': [], 'value': "'\n print('"},{'id': '254', 'type': 'ERROR', 'children': ['255']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '256', 'type': 'ERROR', 'children': []},{'id': '257', 'type': 'subscript', 'children': ['258', '261']},{'id': '258', 'type': 'subscript', 'children': ['259', '260']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'norm_threshold'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'compare'},{'id': '262', 'type': 'subscript', 'children': ['263', '266']},{'id': '263', 'type': 'subscript', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'norm_threshold'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'compare'},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'genome'},{'id': '267', 'type': 'ERROR', 'children': ['268']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'normal_thresh'},{'id': '269', 'type': 'ERROR', 'children': ['270']},{'id': '270', 'type': 'comparison_operator', 'children': ['271', '272', '275'], 'value': 'in'},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'normal_thresh'},{'id': '272', 'type': 'ERROR', 'children': ['273', '274']},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'for'},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'score'},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'scores'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '277', 'type': 'ERROR', 'children': ['278']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'if'},{'id': '279', 'type': 'comparison_operator', 'children': ['280', '286'], 'value': '>'},{'id': '280', 'type': 'call', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '282', 'type': 'argument_list', 'children': ['283']},{'id': '283', 'type': 'subscript', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'scores'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'score'},{'id': '286', 'type': 'integer', 'children': [], 'value': '0'},{'id': '287', 'type': 'block', 'children': ['288']},{'id': '288', 'type': 'expression_statement', 'children': ['289']},{'id': '289', 'type': 'call', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '291', 'type': 'argument_list', 'children': ['292', '295']},{'id': '292', 'type': 'concatenated_string', 'children': ['293', '294']},{'id': '293', 'type': 'string', 'children': [], 'value': "'\n print('"},{'id': '294', 'type': 'string', 'children': [], 'value': "'"},{'id': '295', 'type': 'keyword_argument', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '298', 'type': 'expression_statement', 'children': ['299']},{'id': '299', 'type': 'call', 'children': ['300', '303']},{'id': '300', 'type': 'attribute', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '303', 'type': 'argument_list', 'children': []},{'id': '304', 'type': 'if_statement', 'children': ['305', '308', '320']},{'id': '305', 'type': 'comparison_operator', 'children': ['306', '307'], 'value': 'is'},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'calc_threshold'},{'id': '307', 'type': 'True', 'children': []},{'id': '308', 'type': 'block', 'children': ['309']},{'id': '309', 'type': 'return_statement', 'children': ['310']},{'id': '310', 'type': 'binary_operator', 'children': ['311', '318'], 'value': '+'},{'id': '311', 'type': 'subscript', 'children': ['312', '313']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'thresholds'},{'id': '313', 'type': 'slice', 'children': ['314', '315', '316']},{'id': '314', 'type': 'integer', 'children': [], 'value': '0'},{'id': '315', 'type': 'colon', 'children': []},{'id': '316', 'type': 'unary_operator', 'children': ['317'], 'value': '-'},{'id': '317', 'type': 'integer', 'children': [], 'value': '1'},{'id': '318', 'type': 'list', 'children': ['319'], 'value': '[norm_threshold]'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'norm_threshold'},{'id': '320', 'type': 'else_clause', 'children': ['321']},{'id': '321', 'type': 'block', 'children': ['322']},{'id': '322', 'type': 'return_statement', 'children': ['323']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'thresholds'} | def calc_thresholds(rbh, file_name, thresholds = [False, False, False, False], stdevs = 2):
calc_threshold = thresholds[-1]
norm_threshold = {}
for pair in itertools.permutations([i for i in rbh], 2):
if pair[0] not in norm_threshold:
norm_threshold[pair[0]] = {}
norm_threshold[pair[0]][pair[1]] = {}
out = open(file_name, 'w')
print('
comparisons = []
for genome in rbh:
for compare in rbh[genome]:
pair = ''.join(sorted([genome, compare]))
if pair in comparisons:
continue
comparisons.append(pair)
scores = {'percent identity': [], 'e-value': [], 'bit score': [], 'normalized bit score': [], 'alignment length fraction': []}
print('
for id in rbh[genome][compare]:
pident, length_fraction, e, bit, norm_bit = rbh[genome][compare][id][3:]
scores['percent identity'].append(pident)
scores['alignment length fraction'].append(length_fraction)
scores['e-value'].append(e)
scores['bit score'].append(bit)
scores['normalized bit score'].append(norm_bit)
if calc_threshold is True:
norms = scores['normalized bit score']
average = numpy.average(norms)
std = numpy.std(norms)
normal_thresh = average - (std * stdevs)
print('
print('
print('
norm_threshold[genome][compare], norm_threshold[compare][genome] = normal_thresh, normal_thresh
for score in scores:
print('
if len(scores[score]) > 0:
print('
print('', file=out)
out.close()
if calc_threshold is True:
return thresholds[0:-1] + [norm_threshold]
else:
return thresholds |
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'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '179', 'type': 'block', 'children': ['180']},{'id': '180', 'type': 'expression_statement', 'children': ['181']},{'id': '181', 'type': 'call', 'children': ['182', '185']},{'id': '182', 'type': 'attribute', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '185', 'type': 'argument_list', 'children': ['186']},{'id': '186', 'type': 'call', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'insert_element'},{'id': '188', 'type': 'argument_list', 'children': ['189', '190', '191', '192']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'elem_to_update'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '193', 'type': 'elif_clause', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '195', 'type': 'block', 'children': ['196']},{'id': '196', 'type': 'expression_statement', 'children': ['197']},{'id': '197', 'type': 'call', 'children': ['198', '201']},{'id': '198', 'type': 'attribute', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '201', 'type': 'argument_list', 'children': ['202']},{'id': '202', 'type': 'call', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'insert_element'},{'id': '204', 'type': 'argument_list', 'children': ['205', '206', '207', '208']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'elem_to_update'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '208', 'type': 'dictionary_splat', 'children': ['209']},{'id': '209', 'type': 'dictionary', 'children': ['210']},{'id': '210', 'type': 'pair', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '213', 'type': 'else_clause', 'children': ['214']},{'id': '214', 'type': 'block', 'children': ['215', '225']},{'id': '215', 'type': 'expression_statement', 'children': ['216']},{'id': '216', 'type': 'call', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'set_element_attributes'},{'id': '218', 'type': 'argument_list', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'elem_to_update'},{'id': '220', 'type': 'dictionary_splat', 'children': ['221']},{'id': '221', 'type': 'dictionary', 'children': ['222']},{'id': '222', 'type': 'pair', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '225', 'type': 'expression_statement', 'children': ['226']},{'id': '226', 'type': 'call', 'children': ['227', '230']},{'id': '227', 'type': 'attribute', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '230', 'type': 'argument_list', 'children': ['231']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'elem_to_update'},{'id': '232', 'type': 'return_statement', 'children': ['233']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '234', 'type': 'expression_statement', 'children': ['235']},{'id': '235', 'type': 'assignment', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'xpaths'},{'id': '237', 'type': 'call', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'reduce_value'},{'id': '239', 'type': 'argument_list', 'children': ['240']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'xpaths'},{'id': '241', 'type': 'expression_statement', 'children': ['242']},{'id': '242', 'type': 'assignment', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '244', 'type': 'call', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'filter_empty'},{'id': '246', 'type': 'argument_list', 'children': ['247']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '248', 'type': 'if_statement', 'children': ['249', '254', '264']},{'id': '249', 'type': 'call', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '251', 'type': 'argument_list', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'xpaths'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'string_types'},{'id': '254', 'type': 'block', 'children': ['255']},{'id': '255', 'type': 'return_statement', 'children': ['256']},{'id': '256', 'type': 'call', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'update_element'},{'id': '258', 'type': 'argument_list', 'children': ['259', '260', '261', '262', '263']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'tree_to_update'},{'id': '260', 'type': 'integer', 'children': [], 'value': '0'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'xpath_root'},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'xpaths'},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '264', 'type': 'else_clause', 'children': ['265']},{'id': '265', 'type': 'block', 'children': ['266', '270', '302']},{'id': '266', 'type': 'expression_statement', 'children': ['267']},{'id': '267', 'type': 'assignment', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'each'},{'id': '269', 'type': 'list', 'children': [], 'value': '[]'},{'id': '270', 'type': 'for_statement', 'children': ['271', '274', '278']},{'id': '271', 'type': 'pattern_list', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'xpath'},{'id': '274', 'type': 'call', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '276', 'type': 'argument_list', 'children': ['277']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'xpaths'},{'id': '278', 'type': 'block', 'children': ['279', '288']},{'id': '279', 'type': 'expression_statement', 'children': ['280']},{'id': '280', 'type': 'assignment', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '282', 'type': 'conditional_expression', 'children': ['283', '286', '287'], 'value': 'if'},{'id': '283', 'type': 'subscript', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '287', 'type': 'None', 'children': []},{'id': '288', 'type': 'expression_statement', 'children': ['289']},{'id': '289', 'type': 'call', 'children': ['290', '293']},{'id': '290', 'type': 'attribute', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'each'},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '293', 'type': 'argument_list', 'children': ['294']},{'id': '294', 'type': 'call', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'update_element'},{'id': '296', 'type': 'argument_list', 'children': ['297', '298', '299', '300', '301']},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'tree_to_update'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'xpath_root'},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'xpath'},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '302', 'type': 'return_statement', 'children': ['303']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'each'} | def _update_property(tree_to_update, xpath_root, xpaths, values):
def update_element(elem, idx, root, path, vals):
has_root = bool(root and len(path) > len(root) and path.startswith(root))
path, attr = get_xpath_tuple(path)
if attr:
removed = [get_element(elem, path)]
remove_element_attributes(removed[0], attr)
elif not has_root:
removed = wrap_value(remove_element(elem, path))
else:
path = get_xpath_branch(root, path)
removed = [] if idx != 0 else [remove_element(e, path, True) for e in get_elements(elem, root)]
if not vals:
return removed
items = []
for i, val in enumerate(wrap_value(vals)):
elem_to_update = elem
if has_root:
elem_to_update = insert_element(elem, (i + idx), root)
val = val.decode('utf-8') if not isinstance(val, string_types) else val
if not attr:
items.append(insert_element(elem_to_update, i, path, val))
elif path:
items.append(insert_element(elem_to_update, i, path, **{attr: val}))
else:
set_element_attributes(elem_to_update, **{attr: val})
items.append(elem_to_update)
return items
xpaths = reduce_value(xpaths)
values = filter_empty(values)
if isinstance(xpaths, string_types):
return update_element(tree_to_update, 0, xpath_root, xpaths, values)
else:
each = []
for index, xpath in enumerate(xpaths):
value = values[index] if values else None
each.extend(update_element(tree_to_update, index, xpath_root, xpath, value))
return each |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'validate_complex_list'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'xpath_map'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'block', 'children': ['10']},{'id': '10', 'type': 'if_statement', 'children': ['11', '14']},{'id': '11', 'type': 'comparison_operator', 'children': ['12', '13'], 'value': 'is'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '24', '46']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'validate_type'},{'id': '18', 'type': 'argument_list', 'children': ['19', '20', '21']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '21', 'type': 'tuple', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '24', 'type': 'if_statement', 'children': ['25', '28', '35']},{'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': 'in'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '27', 'type': 'identifier', 'children': [], 'value': '_complex_definitions'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'complex_keys'},{'id': '32', 'type': 'subscript', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': '_complex_definitions'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '35', 'type': 'else_clause', 'children': ['36']},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'complex_keys'},{'id': '40', 'type': 'conditional_expression', 'children': ['41', '42', '45'], 'value': 'if'},{'id': '41', 'type': 'dictionary', 'children': []},{'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': 'is'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'xpath_map'},{'id': '44', 'type': 'None', 'children': []},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'xpath_map'},{'id': '46', 'type': 'for_statement', 'children': ['47', '50', '57']},{'id': '47', 'type': 'pattern_list', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'complex_struct'},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'wrap_value'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '57', 'type': 'block', 'children': ['58', '71', '78']},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'cs_idx'},{'id': '61', 'type': 'binary_operator', 'children': ['62', '70'], 'value': '+'},{'id': '62', 'type': 'binary_operator', 'children': ['63', '66'], 'value': '+'},{'id': '63', 'type': 'binary_operator', 'children': ['64', '65'], 'value': '+'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '65', 'type': 'string', 'children': [], 'value': "'['"},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '70', 'type': 'string', 'children': [], 'value': "']'"},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'call', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'validate_type'},{'id': '74', 'type': 'argument_list', 'children': ['75', '76', '77']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'cs_idx'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'complex_struct'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '78', 'type': 'for_statement', 'children': ['79', '82', '86']},{'id': '79', 'type': 'pattern_list', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'cs_prop'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'cs_val'},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'iteritems'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'complex_struct'},{'id': '86', 'type': 'block', 'children': ['87', '98', '122']},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'cs_key'},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'tuple', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'cs_idx'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'cs_prop'},{'id': '98', 'type': 'if_statement', 'children': ['99', '102']},{'id': '99', 'type': 'comparison_operator', 'children': ['100', '101'], 'value': 'not'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'cs_prop'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'complex_keys'},{'id': '102', 'type': 'block', 'children': ['103']},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': '_validation_error'},{'id': '106', 'type': 'argument_list', 'children': ['107', '108', '109', '110']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '108', 'type': 'None', 'children': []},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '110', 'type': '()', 'children': ['111']},{'id': '111', 'type': 'call', 'children': ['112', '115']},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'string', 'children': [], 'value': "'keys: {0}'"},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '115', 'type': 'argument_list', 'children': ['116']},{'id': '116', 'type': 'call', 'children': ['117', '120']},{'id': '117', 'type': 'attribute', 'children': ['118', '119']},{'id': '118', 'type': 'string', 'children': [], 'value': "','"},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '120', 'type': 'argument_list', 'children': ['121']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'complex_keys'},{'id': '122', 'type': 'if_statement', 'children': ['123', '129', '139']},{'id': '123', 'type': 'not_operator', 'children': ['124']},{'id': '124', 'type': 'call', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '126', 'type': 'argument_list', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'cs_val'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '129', 'type': 'block', 'children': ['130']},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'validate_type'},{'id': '133', 'type': 'argument_list', 'children': ['134', '135', '136']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'cs_key'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'cs_val'},{'id': '136', 'type': 'tuple', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'string_types'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '139', 'type': 'else_clause', 'children': ['140']},{'id': '140', 'type': 'block', 'children': ['141']},{'id': '141', 'type': 'for_statement', 'children': ['142', '145', '149']},{'id': '142', 'type': 'pattern_list', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'list_idx'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'list_val'},{'id': '145', 'type': 'call', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '147', 'type': 'argument_list', 'children': ['148']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'cs_val'},{'id': '149', 'type': 'block', 'children': ['150', '163']},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'assignment', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'list_prop'},{'id': '153', 'type': 'binary_operator', 'children': ['154', '162'], 'value': '+'},{'id': '154', 'type': 'binary_operator', 'children': ['155', '158'], 'value': '+'},{'id': '155', 'type': 'binary_operator', 'children': ['156', '157'], 'value': '+'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'cs_key'},{'id': '157', 'type': 'string', 'children': [], 'value': "'['"},{'id': '158', 'type': 'call', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'list_idx'},{'id': '162', 'type': 'string', 'children': [], 'value': "']'"},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'call', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'validate_type'},{'id': '166', 'type': 'argument_list', 'children': ['167', '168', '169']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'list_prop'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'list_val'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'string_types'} | def validate_complex_list(prop, value, xpath_map=None):
if value is not None:
validate_type(prop, value, (dict, list))
if prop in _complex_definitions:
complex_keys = _complex_definitions[prop]
else:
complex_keys = {} if xpath_map is None else xpath_map
for idx, complex_struct in enumerate(wrap_value(value)):
cs_idx = prop + '[' + str(idx) + ']'
validate_type(cs_idx, complex_struct, dict)
for cs_prop, cs_val in iteritems(complex_struct):
cs_key = '.'.join((cs_idx, cs_prop))
if cs_prop not in complex_keys:
_validation_error(prop, None, value, ('keys: {0}'.format(','.join(complex_keys))))
if not isinstance(cs_val, list):
validate_type(cs_key, cs_val, (string_types, list))
else:
for list_idx, list_val in enumerate(cs_val):
list_prop = cs_key + '[' + str(list_idx) + ']'
validate_type(list_prop, list_val, string_types) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'validate_dates'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'xpath_map'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'block', 'children': ['10']},{'id': '10', 'type': 'if_statement', 'children': ['11', '14']},{'id': '11', 'type': 'comparison_operator', 'children': ['12', '13'], 'value': 'is'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '22', '29']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'validate_type'},{'id': '18', 'type': 'argument_list', 'children': ['19', '20', '21']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'date_keys'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '29', 'type': 'if_statement', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'date_keys'},{'id': '31', 'type': 'block', 'children': ['32', '84', '90', '103', '109', '116', '123', '140', '157', '174', '191']},{'id': '32', 'type': 'if_statement', 'children': ['33', '40']},{'id': '33', 'type': 'boolean_operator', 'children': ['34', '37'], 'value': 'or'},{'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': 'not'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'DATE_TYPE'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'date_keys'},{'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': 'not'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'DATE_VALUES'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'date_keys'},{'id': '40', 'type': 'block', 'children': ['41', '65']},{'id': '41', 'type': 'if_statement', 'children': ['42', '45', '52']},{'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': 'in'},{'id': '43', 'type': 'identifier', 'children': 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'subscript', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': '_complex_definitions'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'DATES'},{'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': 'is'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'xpath_map'},{'id': '63', 'type': 'None', 'children': []},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'xpath_map'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': '_validation_error'},{'id': '68', 'type': 'argument_list', 'children': ['69', '70', '71', '72']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'prop'},{'id': '70', 'type': 'None', 'children': []},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '72', 'type': '()', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '77']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'string', 'children': [], 'value': "'keys: {0}'"},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'string', 'children': [], 'value': "','"},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'complex_keys'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'date_type'},{'id': '87', 'type': 'subscript', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'DATE_TYPE'},{'id': '90', 'type': 'if_statement', 'children': ['91', '94']},{'id': '91', 'type': 'comparison_operator', 'children': ['92', '93'], 'value': 'not'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'date_type'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'DATE_TYPES'},{'id': '94', 'type': 'block', 'children': ['95']},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': '_validation_error'},{'id': '98', 'type': 'argument_list', 'children': ['99', '100', '101', '102']},{'id': '99', 'type': 'string', 'children': [], 'value': "'dates.type'"},{'id': '100', 'type': 'None', 'children': []},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'date_type'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'DATE_TYPES'},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'assignment', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'date_vals'},{'id': '106', 'type': 'subscript', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'DATE_VALUES'},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'call', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'validate_type'},{'id': '112', 'type': 'argument_list', 'children': ['113', '114', '115']},{'id': '113', 'type': 'string', 'children': [], 'value': "'dates.values'"},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'date_vals'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'dates_len'},{'id': '119', 'type': 'call', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '121', 'type': 'argument_list', 'children': ['122']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'date_vals'},{'id': '123', 'type': 'if_statement', 'children': ['124', '131']},{'id': '124', 'type': 'boolean_operator', 'children': ['125', '128'], 'value': 'and'},{'id': '125', 'type': 'comparison_operator', 'children': ['126', '127'], 'value': '=='},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'date_type'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'DATE_TYPE_MISSING'},{'id': '128', 'type': 'comparison_operator', 'children': ['129', '130'], 'value': '!='},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'dates_len'},{'id': '130', 'type': 'integer', 'children': [], 'value': '0'},{'id': '131', 'type': 'block', 'children': ['132']},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'call', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': '_validation_error'},{'id': '135', 'type': 'argument_list', 'children': ['136', '137', '138', '139']},{'id': '136', 'type': 'string', 'children': [], 'value': "'len(dates.values)'"},{'id': '137', 'type': 'None', 'children': []},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'dates_len'},{'id': '139', 'type': 'integer', 'children': [], 'value': '0'},{'id': '140', 'type': 'if_statement', 'children': ['141', '148']},{'id': '141', 'type': 'boolean_operator', 'children': ['142', '145'], 'value': 'and'},{'id': '142', 'type': 'comparison_operator', 'children': ['143', '144'], 'value': '=='},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'date_type'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'DATE_TYPE_SINGLE'},{'id': '145', 'type': 'comparison_operator', 'children': ['146', '147'], 'value': '!='},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'dates_len'},{'id': '147', 'type': 'integer', 'children': [], 'value': '1'},{'id': '148', 'type': 'block', 'children': ['149']},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': '_validation_error'},{'id': '152', 'type': 'argument_list', 'children': ['153', '154', '155', '156']},{'id': '153', 'type': 'string', 'children': [], 'value': "'len(dates.values)'"},{'id': '154', 'type': 'None', 'children': []},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'dates_len'},{'id': '156', 'type': 'integer', 'children': [], 'value': '1'},{'id': '157', 'type': 'if_statement', 'children': ['158', '165']},{'id': '158', 'type': 'boolean_operator', 'children': ['159', '162'], 'value': 'and'},{'id': '159', 'type': 'comparison_operator', 'children': ['160', '161'], 'value': '=='},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'date_type'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'DATE_TYPE_RANGE'},{'id': '162', 'type': 'comparison_operator', 'children': ['163', '164'], 'value': '!='},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'dates_len'},{'id': '164', 'type': 'integer', 'children': [], 'value': '2'},{'id': '165', 'type': 'block', 'children': ['166']},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'call', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': '_validation_error'},{'id': '169', 'type': 'argument_list', 'children': ['170', '171', '172', '173']},{'id': '170', 'type': 'string', 'children': [], 'value': "'len(dates.values)'"},{'id': '171', 'type': 'None', 'children': []},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'dates_len'},{'id': '173', 'type': 'integer', 'children': [], 'value': '2'},{'id': '174', 'type': 'if_statement', 'children': ['175', '182']},{'id': '175', 'type': 'boolean_operator', 'children': ['176', '179'], 'value': 'and'},{'id': '176', 'type': 'comparison_operator', 'children': ['177', '178'], 'value': '=='},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'date_type'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'DATE_TYPE_MULTIPLE'},{'id': '179', 'type': 'comparison_operator', 'children': ['180', '181'], 'value': '<'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'dates_len'},{'id': '181', 'type': 'integer', 'children': [], 'value': '2'},{'id': '182', 'type': 'block', 'children': ['183']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'call', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': '_validation_error'},{'id': '186', 'type': 'argument_list', 'children': ['187', '188', '189', '190']},{'id': '187', 'type': 'string', 'children': [], 'value': "'len(dates.values)'"},{'id': '188', 'type': 'None', 'children': []},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'dates_len'},{'id': '190', 'type': 'string', 'children': [], 'value': "'at least two'"},{'id': '191', 'type': 'for_statement', 'children': ['192', '195', '199']},{'id': '192', 'type': 'pattern_list', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '195', 'type': 'call', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '197', 'type': 'argument_list', 'children': ['198']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'date_vals'},{'id': '199', 'type': 'block', 'children': ['200', '211']},{'id': '200', 'type': 'expression_statement', 'children': ['201']},{'id': '201', 'type': 'assignment', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'date_key'},{'id': '203', 'type': 'binary_operator', 'children': ['204', '210'], 'value': '+'},{'id': '204', 'type': 'binary_operator', 'children': ['205', '206'], 'value': '+'},{'id': '205', 'type': 'string', 'children': [], 'value': "'dates.value['"},{'id': '206', 'type': 'call', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '208', 'type': 'argument_list', 'children': ['209']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '210', 'type': 'string', 'children': [], 'value': "']'"},{'id': '211', 'type': 'expression_statement', 'children': ['212']},{'id': '212', 'type': 'call', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'validate_type'},{'id': '214', 'type': 'argument_list', 'children': ['215', '216', '217']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'date_key'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'string_types'} | def validate_dates(prop, value, xpath_map=None):
if value is not None:
validate_type(prop, value, dict)
date_keys = set(value)
if date_keys:
if DATE_TYPE not in date_keys or DATE_VALUES not in date_keys:
if prop in _complex_definitions:
complex_keys = _complex_definitions[prop]
else:
complex_keys = _complex_definitions[DATES] if xpath_map is None else xpath_map
_validation_error(prop, None, value, ('keys: {0}'.format(','.join(complex_keys))))
date_type = value[DATE_TYPE]
if date_type not in DATE_TYPES:
_validation_error('dates.type', None, date_type, DATE_TYPES)
date_vals = value[DATE_VALUES]
validate_type('dates.values', date_vals, list)
dates_len = len(date_vals)
if date_type == DATE_TYPE_MISSING and dates_len != 0:
_validation_error('len(dates.values)', None, dates_len, 0)
if date_type == DATE_TYPE_SINGLE and dates_len != 1:
_validation_error('len(dates.values)', None, dates_len, 1)
if date_type == DATE_TYPE_RANGE and dates_len != 2:
_validation_error('len(dates.values)', None, dates_len, 2)
if date_type == DATE_TYPE_MULTIPLE and dates_len < 2:
_validation_error('len(dates.values)', None, dates_len, 'at least two')
for idx, date in enumerate(date_vals):
date_key = 'dates.value[' + str(idx) + ']'
validate_type(date_key, date, string_types) |
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'type': 'identifier', 'children': [], 'value': 'escaped_slash'},{'id': '30', 'type': 'False', 'children': []},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '38', 'type': 'argument_list', 'children': []},{'id': '39', 'type': 'if_statement', 'children': ['40', '52', '99', '155']},{'id': '40', 'type': 'boolean_operator', 'children': ['41', '48'], 'value': 'and'},{'id': '41', 'type': 'comparison_operator', 'children': ['42', '47'], 'value': '=='},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'lookahead'},{'id': '46', 'type': 'argument_list', 'children': []},{'id': '47', 'type': 'string', 'children': [], 'value': "u'-'"},{'id': '48', 'type': 'not_operator', 'children': ['49']},{'id': '49', 'type': 'comparison_operator', 'children': ['50', '51'], 'value': '=='},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '51', 'type': 'string', 'children': [], 'value': "u'\\\\'"},{'id': '52', 'type': 'block', 'children': ['53', '57', '63', '71', '89']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '62', 'type': 'argument_list', 'children': []},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '66', 'type': 'call', 'children': ['67', '70']},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '70', 'type': 'argument_list', 'children': []},{'id': '71', 'type': 'if_statement', 'children': ['72', '81']},{'id': '72', 'type': 'boolean_operator', 'children': ['73', '75'], 'value': 'or'},{'id': '73', 'type': 'not_operator', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '75', 'type': '()', 'children': ['76']},{'id': '76', 'type': 'comparison_operator', 'children': ['77', '78'], 'value': 'in'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'meta_chars'},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'raise_statement', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': 'string', 'children': [], 'value': 'u"unexpected end of class range"'},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'augmented_assignment', 'children': ['91', '92'], 'value': '+='},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'chars'},{'id': '92', 'type': 'call', 'children': ['93', '96']},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'getCharacterRange'},{'id': '96', 'type': 'argument_list', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '99', 'type': 'elif_clause', 'children': ['100', '103']},{'id': '100', 'type': 'comparison_operator', 'children': ['101', '102'], 'value': '=='},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '102', 'type': 'string', 'children': [], 'value': "u'\\\\'"},{'id': '103', 'type': 'block', 'children': ['104']},{'id': '104', 'type': 'if_statement', 'children': ['105', '114', '128']},{'id': '105', 'type': 'comparison_operator', 'children': ['106', '111'], 'value': 'in'},{'id': '106', 'type': 'call', 'children': ['107', '110']},{'id': '107', 'type': 'attribute', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'lookahead'},{'id': '110', 'type': 'argument_list', 'children': []},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'meta_chars'},{'id': '114', 'type': 'block', 'children': ['115', '123', '127']},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'assignment', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '118', 'type': 'call', 'children': ['119', '122']},{'id': '119', 'type': 'attribute', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '122', 'type': 'argument_list', 'children': []},{'id': '123', 'type': 'expression_statement', 'children': ['124']},{'id': '124', 'type': 'augmented_assignment', 'children': ['125', '126'], 'value': '+='},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'chars'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '127', 'type': 'continue_statement', 'children': []},{'id': '128', 'type': 'elif_clause', 'children': ['129', '138']},{'id': '129', 'type': 'comparison_operator', 'children': ['130', '135'], 'value': 'in'},{'id': '130', 'type': 'call', 'children': ['131', '134']},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'lookahead'},{'id': '134', 'type': 'argument_list', 'children': []},{'id': '135', 'type': 'attribute', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'string_code'},{'id': '138', 'type': 'block', 'children': ['139', '147']},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'assignment', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '146', 'type': 'argument_list', 'children': []},{'id': '147', 'type': 'expression_statement', 'children': ['148']},{'id': '148', 'type': 'augmented_assignment', 'children': ['149', '150'], 'value': '+='},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'chars'},{'id': '150', 'type': 'subscript', 'children': ['151', '154']},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'string_code'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '155', 'type': 'elif_clause', 'children': ['156', '163']},{'id': '156', 'type': 'boolean_operator', 'children': ['157', '158'], 'value': 'and'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '158', 'type': 'comparison_operator', 'children': ['159', '160'], 'value': 'not'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'meta_chars'},{'id': '163', 'type': 'block', 'children': ['164']},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'augmented_assignment', 'children': ['166', '167'], 'value': '+='},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'chars'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '168', 'type': 'if_statement', 'children': ['169', '172']},{'id': '169', 'type': 'comparison_operator', 'children': ['170', '171'], 'value': '=='},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '171', 'type': 'string', 'children': [], 'value': "u']'"},{'id': '172', 'type': 'block', 'children': ['173', '203']},{'id': '173', 'type': 'if_statement', 'children': ['174', '181', '192']},{'id': '174', 'type': 'comparison_operator', 'children': ['175', '180'], 'value': '=='},{'id': '175', 'type': 'call', 'children': ['176', '179']},{'id': '176', 'type': 'attribute', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'lookahead'},{'id': '179', 'type': 'argument_list', 'children': []},{'id': '180', 'type': 'string', 'children': [], 'value': "u'{'"},{'id': '181', 'type': 'block', 'children': ['182']},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '187']},{'id': '184', 'type': 'list_pattern', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'cnt'},{'id': '187', 'type': 'call', 'children': ['188', '191']},{'id': '188', 'type': 'attribute', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'getQuantifier'},{'id': '191', 'type': 'argument_list', 'children': []},{'id': '192', 'type': 'else_clause', 'children': ['193']},{'id': '193', 'type': 'block', 'children': ['194', '199']},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'assignment', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '197', 'type': 'unary_operator', 'children': ['198'], 'value': '-'},{'id': '198', 'type': 'integer', 'children': [], 'value': '1'},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'cnt'},{'id': '202', 'type': 'integer', 'children': [], 'value': '1'},{'id': '203', 'type': 'break_statement', 'children': []},{'id': '204', 'type': 'if_statement', 'children': ['205', '221']},{'id': '205', 'type': 'boolean_operator', 'children': ['206', '213'], 'value': 'and'},{'id': '206', 'type': 'boolean_operator', 'children': ['207', '208'], 'value': 'and'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '208', 'type': 'comparison_operator', 'children': ['209', '210'], 'value': 'in'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '210', 'type': 'attribute', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'meta_chars'},{'id': '213', 'type': 'not_operator', 'children': ['214']},{'id': '214', 'type': 'comparison_operator', 'children': ['215', '220'], 'value': '=='},{'id': '215', 'type': 'call', 'children': ['216', '219']},{'id': '216', 'type': 'attribute', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'last'},{'id': '219', 'type': 'argument_list', 'children': []},{'id': '220', 'type': 'string', 'children': [], 'value': 'u"\\\\"'},{'id': '221', 'type': 'block', 'children': ['222']},{'id': '222', 'type': 'raise_statement', 'children': ['223']},{'id': '223', 'type': 'call', 'children': ['224', '227']},{'id': '224', 'type': 'attribute', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'},{'id': '227', 'type': 'argument_list', 'children': ['228']},{'id': '228', 'type': 'binary_operator', 'children': ['229', '230'], 'value': '%'},{'id': '229', 'type': 'string', 'children': [], 'value': 'u"Un-escaped character in class definition: %s"'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '231', 'type': 'if_statement', 'children': ['232', '234']},{'id': '232', 'type': 'not_operator', 'children': ['233']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '234', 'type': 'block', 'children': ['235']},{'id': '235', 'type': 'break_statement', 'children': []},{'id': '236', 'type': 'return_statement', 'children': ['237']},{'id': '237', 'type': 'call', 'children': ['238', '241']},{'id': '238', 'type': 'attribute', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'CharacterSet'},{'id': '241', 'type': 'argument_list', 'children': ['242', '243', '244']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'chars'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'cnt'} | def getCharacterSet(self):
'''Get a character set with individual members or ranges.
Current index is on '[', the start of the character set.
'''
chars = u''
c = None
cnt = 1
start = 0
while True:
escaped_slash = False
c = self.next()
if self.lookahead() == u'-' and not c == u'\\':
f = c
self.next()
c = self.next()
if not c or (c in self.meta_chars):
raise StringGenerator.SyntaxError(u"unexpected end of class range")
chars += self.getCharacterRange(f, c)
elif c == u'\\':
if self.lookahead() in self.meta_chars:
c = self.next()
chars += c
continue
elif self.lookahead() in self.string_code:
c = self.next()
chars += self.string_code[c]
elif c and c not in self.meta_chars:
chars += c
if c == u']':
if self.lookahead() == u'{':
[start, cnt] = self.getQuantifier()
else:
start = -1
cnt = 1
break
if c and c in self.meta_chars and not self.last() == u"\\":
raise StringGenerator.SyntaxError(u"Un-escaped character in class definition: %s" % c)
if not c:
break
return StringGenerator.CharacterSet(chars, start, cnt) |
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'type': 'False', 'children': []},{'id': '31', 'type': 'while_statement', 'children': ['32', '33']},{'id': '32', 'type': 'True', 'children': []},{'id': '33', 'type': 'block', 'children': ['34', '42', '47', '240']},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '41', 'type': 'argument_list', 'children': []},{'id': '42', 'type': 'if_statement', 'children': ['43', '45']},{'id': '43', 'type': 'not_operator', 'children': ['44']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '45', 'type': 'block', 'children': ['46']},{'id': '46', 'type': 'break_statement', 'children': []},{'id': '47', 'type': 'if_statement', 'children': ['48', '55', '67', '93', '118', '146', '177', '195', '213']},{'id': '48', 'type': 'boolean_operator', 'children': ['49', '50'], 'value': 'and'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': 'not'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'meta_chars'},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'call', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'getLiteral'},{'id': '66', 'type': 'argument_list', 'children': []},{'id': '67', 'type': 'elif_clause', 'children': ['68', '81']},{'id': '68', 'type': 'boolean_operator', 'children': ['69', '74'], 'value': 'and'},{'id': '69', 'type': 'boolean_operator', 'children': ['70', '71'], 'value': 'and'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '71', 'type': 'comparison_operator', 'children': ['72', '73'], 'value': '=='},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '73', 'type': 'string', 'children': [], 'value': "u'$'"},{'id': '74', 'type': 'comparison_operator', 'children': ['75', '80'], 'value': '=='},{'id': '75', 'type': 'call', 'children': ['76', '79']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'lookahead'},{'id': '79', 'type': 'argument_list', 'children': []},{'id': '80', 'type': 'string', 'children': [], 'value': "u'{'"},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': 'call', 'children': ['89', '92']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'getSource'},{'id': '92', 'type': 'argument_list', 'children': []},{'id': '93', 'type': 'elif_clause', 'children': ['94', '106']},{'id': '94', 'type': 'boolean_operator', 'children': ['95', '98'], 'value': 'and'},{'id': '95', 'type': 'comparison_operator', 'children': ['96', '97'], 'value': '=='},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '97', 'type': 'string', 'children': [], 'value': "u'['"},{'id': '98', 'type': 'not_operator', 'children': ['99']},{'id': '99', 'type': 'comparison_operator', 'children': ['100', '105'], 'value': '=='},{'id': '100', 'type': 'call', 'children': ['101', '104']},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'last'},{'id': '104', 'type': 'argument_list', 'children': []},{'id': '105', 'type': 'string', 'children': [], 'value': "u'\\\\'"},{'id': '106', 'type': 'block', 'children': ['107']},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'call', 'children': ['109', '112']},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '112', 'type': 'argument_list', 'children': ['113']},{'id': '113', 'type': 'call', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'getCharacterSet'},{'id': '117', 'type': 'argument_list', 'children': []},{'id': '118', 'type': 'elif_clause', 'children': ['119', '131']},{'id': '119', 'type': 'boolean_operator', 'children': ['120', '123'], 'value': 'and'},{'id': '120', 'type': 'comparison_operator', 'children': ['121', '122'], 'value': '=='},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '122', 'type': 'string', 'children': [], 'value': "u'('"},{'id': '123', 'type': 'not_operator', 'children': ['124']},{'id': '124', 'type': 'comparison_operator', 'children': ['125', '130'], 'value': '=='},{'id': '125', 'type': 'call', 'children': ['126', '129']},{'id': '126', 'type': 'attribute', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'last'},{'id': '129', 'type': 'argument_list', 'children': []},{'id': '130', 'type': 'string', 'children': [], 'value': "u'\\\\'"},{'id': '131', 'type': 'block', 'children': ['132']},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'call', 'children': ['134', '137']},{'id': '134', 'type': 'attribute', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '137', 'type': 'argument_list', 'children': ['138']},{'id': '138', 'type': 'call', 'children': ['139', '142']},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'getSequence'},{'id': '142', 'type': 'argument_list', 'children': ['143']},{'id': '143', 'type': 'binary_operator', 'children': ['144', '145'], 'value': '+'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '145', 'type': 'integer', 'children': [], 'value': '1'},{'id': '146', 'type': 'elif_clause', 'children': ['147', '159']},{'id': '147', 'type': 'boolean_operator', 'children': ['148', '151'], 'value': 'and'},{'id': '148', 'type': 'comparison_operator', 'children': ['149', '150'], 'value': '=='},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '150', 'type': 'string', 'children': [], 'value': "u')'"},{'id': '151', 'type': 'not_operator', 'children': ['152']},{'id': '152', 'type': 'comparison_operator', 'children': ['153', '158'], 'value': '=='},{'id': '153', 'type': 'call', 'children': ['154', '157']},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'last'},{'id': '157', 'type': 'argument_list', 'children': []},{'id': '158', 'type': 'string', 'children': [], 'value': "u'\\\\'"},{'id': '159', 'type': 'block', 'children': ['160', '172', '176']},{'id': '160', 'type': 'if_statement', 'children': ['161', '164']},{'id': '161', 'type': 'comparison_operator', 'children': ['162', '163'], 'value': '=='},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '163', 'type': 'integer', 'children': [], 'value': '0'},{'id': '164', 'type': 'block', 'children': ['165']},{'id': '165', 'type': 'raise_statement', 'children': ['166']},{'id': '166', 'type': 'call', 'children': ['167', '170']},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'},{'id': '170', 'type': 'argument_list', 'children': ['171']},{'id': '171', 'type': 'string', 'children': [], 'value': 'u"Extra closing parenthesis"'},{'id': '172', 'type': 'expression_statement', 'children': ['173']},{'id': '173', 'type': 'assignment', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'sequence_closed'},{'id': '175', 'type': 'True', 'children': []},{'id': '176', 'type': 'break_statement', 'children': []},{'id': '177', 'type': 'elif_clause', 'children': ['178', '190']},{'id': '178', 'type': 'boolean_operator', 'children': ['179', '182'], 'value': 'and'},{'id': '179', 'type': 'comparison_operator', 'children': ['180', '181'], 'value': '=='},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '181', 'type': 'string', 'children': [], 'value': "u'|'"},{'id': '182', 'type': 'not_operator', 'children': ['183']},{'id': '183', 'type': 'comparison_operator', 'children': ['184', '189'], 'value': '=='},{'id': '184', 'type': 'call', 'children': ['185', '188']},{'id': '185', 'type': 'attribute', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'last'},{'id': '188', 'type': 'argument_list', 'children': []},{'id': '189', 'type': 'string', 'children': [], 'value': "u'\\\\'"},{'id': '190', 'type': 'block', 'children': ['191']},{'id': '191', 'type': 'expression_statement', 'children': ['192']},{'id': '192', 'type': 'assignment', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '195', 'type': 'elif_clause', 'children': ['196', '208']},{'id': '196', 'type': 'boolean_operator', 'children': ['197', '200'], 'value': 'and'},{'id': '197', 'type': 'comparison_operator', 'children': ['198', '199'], 'value': '=='},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '199', 'type': 'string', 'children': [], 'value': "u'&'"},{'id': '200', 'type': 'not_operator', 'children': ['201']},{'id': '201', 'type': 'comparison_operator', 'children': ['202', '207'], 'value': '=='},{'id': '202', 'type': 'call', 'children': ['203', '206']},{'id': '203', 'type': 'attribute', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'last'},{'id': '206', 'type': 'argument_list', 'children': []},{'id': '207', 'type': 'string', 'children': [], 'value': "u'\\\\'"},{'id': '208', 'type': 'block', 'children': ['209']},{'id': '209', 'type': 'expression_statement', 'children': ['210']},{'id': '210', 'type': 'assignment', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '213', 'type': 'else_clause', 'children': ['214']},{'id': '214', 'type': 'block', 'children': ['215']},{'id': '215', 'type': 'if_statement', 'children': ['216', '230']},{'id': '216', 'type': 'boolean_operator', 'children': ['217', '222'], 'value': 'and'},{'id': '217', 'type': 'comparison_operator', 'children': ['218', '219'], 'value': 'in'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '219', 'type': 'attribute', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'meta_chars'},{'id': '222', 'type': 'not_operator', 'children': ['223']},{'id': '223', 'type': 'comparison_operator', 'children': ['224', '229'], 'value': '=='},{'id': '224', 'type': 'call', 'children': ['225', '228']},{'id': '225', 'type': 'attribute', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'last'},{'id': '228', 'type': 'argument_list', 'children': []},{'id': '229', 'type': 'string', 'children': [], 'value': 'u"\\\\"'},{'id': '230', 'type': 'block', 'children': ['231']},{'id': '231', 'type': 'raise_statement', 'children': ['232']},{'id': '232', 'type': 'call', 'children': ['233', '236']},{'id': '233', 'type': 'attribute', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'},{'id': '236', 'type': 'argument_list', 'children': ['237']},{'id': '237', 'type': 'binary_operator', 'children': ['238', '239'], 'value': '%'},{'id': '238', 'type': 'string', 'children': [], 'value': 'u"Un-escaped special character: %s"'},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '240', 'type': 'if_statement', 'children': ['241', '245', '274']},{'id': '241', 'type': 'boolean_operator', 'children': ['242', '243'], 'value': 'and'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '243', 'type': 'not_operator', 'children': ['244']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'left_operand'},{'id': '245', 'type': 'block', 'children': ['246', '266']},{'id': '246', 'type': 'if_statement', 'children': ['247', '256']},{'id': '247', 'type': 'boolean_operator', 'children': ['248', '250'], 'value': 'or'},{'id': '248', 'type': 'not_operator', 'children': ['249']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '250', 'type': 'comparison_operator', 'children': ['251', '255'], 'value': '<'},{'id': '251', 'type': 'call', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '253', 'type': 'argument_list', 'children': ['254']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '255', 'type': 'integer', 'children': [], 'value': '1'},{'id': '256', 'type': 'block', 'children': ['257']},{'id': '257', 'type': 'raise_statement', 'children': ['258']},{'id': '258', 'type': 'call', 'children': ['259', '262']},{'id': '259', 'type': 'attribute', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'},{'id': '262', 'type': 'argument_list', 'children': ['263']},{'id': '263', 'type': 'binary_operator', 'children': ['264', '265'], 'value': '%'},{'id': '264', 'type': 'string', 'children': [], 'value': 'u"Operator: %s with no left operand"'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '266', 'type': 'expression_statement', 'children': ['267']},{'id': '267', 'type': 'assignment', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'left_operand'},{'id': '269', 'type': 'call', 'children': ['270', '273']},{'id': '270', 'type': 'attribute', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '273', 'type': 'argument_list', 'children': []},{'id': '274', 'type': 'elif_clause', 'children': ['275', '285']},{'id': '275', 'type': 'boolean_operator', 'children': ['276', '284'], 'value': 'and'},{'id': '276', 'type': 'boolean_operator', 'children': ['277', '278'], 'value': 'and'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '278', 'type': 'comparison_operator', 'children': ['279', '283'], 'value': '>='},{'id': '279', 'type': 'call', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '281', 'type': 'argument_list', 'children': ['282']},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '283', 'type': 'integer', 'children': [], 'value': '1'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'left_operand'},{'id': '285', 'type': 'block', 'children': ['286', '294', '332', '336', '340']},{'id': '286', 'type': 'expression_statement', 'children': ['287']},{'id': '287', 'type': 'assignment', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'right_operand'},{'id': '289', 'type': 'call', 'children': ['290', '293']},{'id': '290', 'type': 'attribute', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '293', 'type': 'argument_list', 'children': []},{'id': '294', 'type': 'if_statement', 'children': ['295', '298', '313']},{'id': '295', 'type': 'comparison_operator', 'children': ['296', '297'], 'value': '=='},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '297', 'type': 'string', 'children': [], 'value': "u'|'"},{'id': '298', 'type': 'block', 'children': ['299']},{'id': '299', 'type': 'expression_statement', 'children': ['300']},{'id': '300', 'type': 'call', 'children': ['301', '304']},{'id': '301', 'type': 'attribute', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '304', 'type': 'argument_list', 'children': ['305']},{'id': '305', 'type': 'call', 'children': ['306', '309']},{'id': '306', 'type': 'attribute', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'SequenceOR'},{'id': '309', 'type': 'argument_list', 'children': ['310']},{'id': '310', 'type': 'list', 'children': ['311', '312'], 'value': '[left_operand, right_operand]'},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'left_operand'},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'right_operand'},{'id': '313', 'type': 'elif_clause', 'children': ['314', '317']},{'id': '314', 'type': 'comparison_operator', 'children': ['315', '316'], 'value': '=='},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '316', 'type': 'string', 'children': [], 'value': "u'&'"},{'id': '317', 'type': 'block', 'children': ['318']},{'id': '318', 'type': 'expression_statement', 'children': ['319']},{'id': '319', 'type': 'call', 'children': ['320', '323']},{'id': '320', 'type': 'attribute', 'children': ['321', '322']},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '323', 'type': 'argument_list', 'children': ['324']},{'id': '324', 'type': 'call', 'children': ['325', '328']},{'id': '325', 'type': 'attribute', 'children': ['326', '327']},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'SequenceAND'},{'id': '328', 'type': 'argument_list', 'children': ['329']},{'id': '329', 'type': 'list', 'children': ['330', '331'], 'value': '[left_operand, right_operand]'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'left_operand'},{'id': '331', 'type': 'identifier', 'children': [], 'value': 'right_operand'},{'id': '332', 'type': 'expression_statement', 'children': ['333']},{'id': '333', 'type': 'assignment', 'children': ['334', '335']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '335', 'type': 'string', 'children': [], 'value': "u''"},{'id': '336', 'type': 'expression_statement', 'children': ['337']},{'id': '337', 'type': 'assignment', 'children': ['338', '339']},{'id': '338', 'type': 'identifier', 'children': [], 'value': 'left_operand'},{'id': '339', 'type': 'None', 'children': []},{'id': '340', 'type': 'expression_statement', 'children': ['341']},{'id': '341', 'type': 'assignment', 'children': ['342', '343']},{'id': '342', 'type': 'identifier', 'children': [], 'value': 'right_operand'},{'id': '343', 'type': 'None', 'children': []},{'id': '344', 'type': 'if_statement', 'children': ['345', '346']},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '346', 'type': 'block', 'children': ['347']},{'id': '347', 'type': 'raise_statement', 'children': ['348']},{'id': '348', 'type': 'call', 'children': ['349', '352']},{'id': '349', 'type': 'attribute', 'children': ['350', '351']},{'id': '350', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '351', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'},{'id': '352', 'type': 'argument_list', 'children': ['353']},{'id': '353', 'type': 'binary_operator', 'children': ['354', '355'], 'value': '%'},{'id': '354', 'type': 'string', 'children': [], 'value': 'u"Operator: %s with no right operand"'},{'id': '355', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '356', 'type': 'if_statement', 'children': ['357', '363']},{'id': '357', 'type': 'boolean_operator', 'children': ['358', '361'], 'value': 'and'},{'id': '358', 'type': 'comparison_operator', 'children': ['359', '360'], 'value': '>'},{'id': '359', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '360', 'type': 'integer', 'children': [], 'value': '0'},{'id': '361', 'type': 'not_operator', 'children': ['362']},{'id': '362', 'type': 'identifier', 'children': [], 'value': 'sequence_closed'},{'id': '363', 'type': 'block', 'children': ['364']},{'id': '364', 'type': 'raise_statement', 'children': ['365']},{'id': '365', 'type': 'call', 'children': ['366', '369']},{'id': '366', 'type': 'attribute', 'children': ['367', '368']},{'id': '367', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '368', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'},{'id': '369', 'type': 'argument_list', 'children': ['370']},{'id': '370', 'type': 'string', 'children': [], 'value': 'u"Missing closing parenthesis"'},{'id': '371', 'type': 'return_statement', 'children': ['372']},{'id': '372', 'type': 'call', 'children': ['373', '376']},{'id': '373', 'type': 'attribute', 'children': ['374', '375']},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'StringGenerator'},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'Sequence'},{'id': '376', 'type': 'argument_list', 'children': ['377']},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'seq'} | def getSequence(self, level=0):
'''Get a sequence of nodes.'''
seq = []
op = ''
left_operand = None
right_operand = None
sequence_closed = False
while True:
c = self.next()
if not c:
break
if c and c not in self.meta_chars:
seq.append(self.getLiteral())
elif c and c == u'$' and self.lookahead() == u'{':
seq.append(self.getSource())
elif c == u'[' and not self.last() == u'\\':
seq.append(self.getCharacterSet())
elif c == u'(' and not self.last() == u'\\':
seq.append(self.getSequence(level + 1))
elif c == u')' and not self.last() == u'\\':
if level == 0:
raise StringGenerator.SyntaxError(u"Extra closing parenthesis")
sequence_closed = True
break
elif c == u'|' and not self.last() == u'\\':
op = c
elif c == u'&' and not self.last() == u'\\':
op = c
else:
if c in self.meta_chars and not self.last() == u"\\":
raise StringGenerator.SyntaxError(u"Un-escaped special character: %s" % c)
if op and not left_operand:
if not seq or len(seq) < 1:
raise StringGenerator.SyntaxError(u"Operator: %s with no left operand" % op)
left_operand = seq.pop()
elif op and len(seq) >= 1 and left_operand:
right_operand = seq.pop()
if op == u'|':
seq.append(StringGenerator.SequenceOR([left_operand, right_operand]))
elif op == u'&':
seq.append(StringGenerator.SequenceAND([left_operand, right_operand]))
op = u''
left_operand = None
right_operand = None
if op:
raise StringGenerator.SyntaxError(u"Operator: %s with no right operand" % op)
if level > 0 and not sequence_closed:
raise StringGenerator.SyntaxError(u"Missing closing parenthesis")
return StringGenerator.Sequence(seq) |
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'return_statement', 'children': []},{'id': '15', 'type': 'if_statement', 'children': ['16', '21']},{'id': '16', 'type': 'call', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'enum'},{'id': '20', 'type': 'argument_list', 'children': []},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'return_statement', 'children': []},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'history'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'resolve'},{'id': '37', 'type': 'argument_list', 'children': []},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '41', 'type': 'None', 'children': []},{'id': '42', 'type': 'if_statement', 'children': ['43', '48', '53']},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'multi_occurrence'},{'id': '47', 'type': 'argument_list', 'children': []},{'id': '48', 'type': 'block', 'children': ['49']},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '52', 'type': 'list', 'children': [], 'value': '[]'},{'id': '53', 'type': 'else_clause', 'children': ['54']},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'if_statement', 'children': ['56', '62']},{'id': '56', 'type': 'comparison_operator', 'children': ['57', '61'], 'value': '>'},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '61', 'type': 'integer', 'children': [], 'value': '0'},{'id': '62', 'type': 'block', 'children': ['63']},{'id': '63', 'type': 'if_statement', 'children': ['64', '69', '93']},{'id': '64', 'type': 'call', 'children': ['65', '68']},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'mixed'},{'id': '68', 'type': 'argument_list', 'children': []},{'id': '69', 'type': 'block', 'children': ['70', '81', '87']},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '73', 'type': 'call', 'children': ['74', '77']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'Factory'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'property'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'assignment', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'md'},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '86', 'type': 'identifier', 'children': [], 'value': '__metadata__'},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '92']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'md'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'sxtype'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '93', 'type': 'else_clause', 'children': ['94']},{'id': '94', 'type': 'block', 'children': ['95', '106', '112', '118']},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '98', 'type': 'call', 'children': ['99', '102']},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'Factory'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'object'},{'id': '102', 'type': 'argument_list', 'children': ['103']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'assignment', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'md'},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '111', 'type': 'identifier', 'children': [], 'value': '__metadata__'},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'md'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'sxtype'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '118', 'type': 'expression_statement', 'children': ['119']},{'id': '119', 'type': 'assignment', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'md'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'ordering'},{'id': '123', 'type': 'call', 'children': ['124', '127']},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'ordering'},{'id': '127', 'type': 'argument_list', 'children': ['128']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'call', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'setattr'},{'id': '132', 'type': 'argument_list', 'children': ['133', '134', '137']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '134', 'type': 'attribute', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '138', 'type': 'if_statement', 'children': ['139', '142']},{'id': '139', 'type': 'comparison_operator', 'children': ['140', '141'], 'value': 'is'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '141', 'type': 'None', 'children': []},{'id': '142', 'type': 'block', 'children': ['143']},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'assignment', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '147', 'type': 'if_statement', 'children': ['148', '154']},{'id': '148', 'type': 'not_operator', 'children': ['149']},{'id': '149', 'type': 'call', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '151', 'type': 'argument_list', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '154', 'type': 'block', 'children': ['155', '163']},{'id': '155', 'type': 'expression_statement', 'children': ['156']},{'id': '156', 'type': 'call', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'add_attributes'},{'id': '160', 'type': 'argument_list', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '163', 'type': 'for_statement', 'children': ['164', '167', '172']},{'id': '164', 'type': 'pattern_list', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'ancestry'},{'id': '167', 'type': 'call', 'children': ['168', '171']},{'id': '168', 'type': 'attribute', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'resolved'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '171', 'type': 'argument_list', 'children': []},{'id': '172', 'type': 'block', 'children': ['173', '183']},{'id': '173', 'type': 'if_statement', 'children': ['174', '181']},{'id': '174', 'type': 'call', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'skip_child'},{'id': '178', 'type': 'argument_list', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'ancestry'},{'id': '181', 'type': 'block', 'children': ['182']},{'id': '182', 'type': 'continue_statement', 'children': []},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'call', 'children': ['185', '188']},{'id': '185', 'type': 'attribute', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'process'},{'id': '188', 'type': 'argument_list', 'children': ['189', '190', '191']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '191', 'type': 'subscript', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'history'},{'id': '193', 'type': 'slice', 'children': ['194']},{'id': '194', 'type': 'colon', 'children': []} | def process(self, data, type, history):
if type in history:
return
if type.enum():
return
history.append(type)
resolved = type.resolve()
value = None
if type.multi_occurrence():
value = []
else:
if len(resolved) > 0:
if resolved.mixed():
value = Factory.property(resolved.name)
md = value.__metadata__
md.sxtype = resolved
else:
value = Factory.object(resolved.name)
md = value.__metadata__
md.sxtype = resolved
md.ordering = self.ordering(resolved)
setattr(data, type.name, value)
if value is not None:
data = value
if not isinstance(data, list):
self.add_attributes(data, resolved)
for child, ancestry in resolved.children():
if self.skip_child(child, ancestry):
continue
self.process(data, child, history[:]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_process_tz'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'naive'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '8', 'type': 'block', 'children': ['9', '98', '105', '112', '149', '155', '203']},{'id': '9', 'type': 'function_definition', 'children': ['10', '11', '13']},{'id': '10', 'type': 'function_name', 'children': [], 'value': '_tz'},{'id': '11', 'type': 'parameters', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '13', 'type': 'block', 'children': ['14', '23', '43', '74', '96']},{'id': '14', 'type': 'if_statement', 'children': ['15', '20']},{'id': '15', 'type': 'comparison_operator', 'children': ['16', '17'], 'value': 'in'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '17', 'type': 'tuple', 'children': ['18', '19']},{'id': '18', 'type': 'None', 'children': []},{'id': '19', 'type': 'string', 'children': [], 'value': "'naive'"},{'id': '20', 'type': 'block', 'children': ['21']},{'id': '21', 'type': 'return_statement', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '23', 'type': 'if_statement', 'children': ['24', '27']},{'id': '24', 'type': 'comparison_operator', 'children': ['25', '26'], 'value': '=='},{'id': '25', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '26', 'type': 'string', 'children': [], 'value': "'local'"},{'id': '27', 'type': 'block', 'children': ['28', '39']},{'id': '28', 'type': 'if_statement', 'children': ['29', '33']},{'id': '29', 'type': 'boolean_operator', 'children': ['30', '31'], 'value': 'and'},{'id': '30', 'type': 'identifier', 'children': [], 'value': '__debug__'},{'id': '31', 'type': 'not_operator', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'localtz'},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'raise_statement', 'children': ['35']},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'string', 'children': [], 'value': '"Requested conversion to local timezone, but `localtz` not installed."'},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'localtz'},{'id': '43', 'type': 'if_statement', 'children': ['44', '50']},{'id': '44', 'type': 'not_operator', 'children': ['45']},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '47', 'type': 'argument_list', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'tzinfo'},{'id': '50', 'type': 'block', 'children': ['51', '67']},{'id': '51', 'type': 'if_statement', 'children': ['52', '56']},{'id': '52', 'type': 'boolean_operator', 'children': ['53', '54'], 'value': 'and'},{'id': '53', 'type': 'identifier', 'children': [], 'value': '__debug__'},{'id': '54', 'type': 'not_operator', 'children': ['55']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'localtz'},{'id': '56', 'type': 'block', 'children': ['57']},{'id': '57', 'type': 'raise_statement', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'binary_operator', 'children': ['62', '63'], 'value': '+'},{'id': '62', 'type': 'string', 'children': [], 'value': '"The `pytz` package must be installed to look up timezone: "'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'repr'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'assignment', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'get_tz'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '74', 'type': 'if_statement', 'children': ['75', '83']},{'id': '75', 'type': 'boolean_operator', 'children': ['76', '82'], 'value': 'and'},{'id': '76', 'type': 'not_operator', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '79', 'type': 'argument_list', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '81', 'type': 'string', 'children': [], 'value': "'normalize'"},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'get_tz'},{'id': '83', 'type': 'block', 'children': ['84']},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '87', 'type': 'call', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'get_tz'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'tzname'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '96', 'type': 'return_statement', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'naive'},{'id': '101', 'type': 'call', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': '_tz'},{'id': '103', 'type': 'argument_list', 'children': ['104']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'naive'},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'assignment', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '108', 'type': 'call', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': '_tz'},{'id': '110', 'type': 'argument_list', 'children': ['111']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '112', 'type': 'if_statement', 'children': ['113', '119']},{'id': '113', 'type': 'boolean_operator', 'children': ['114', '118'], 'value': 'and'},{'id': '114', 'type': 'not_operator', 'children': ['115']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'tzinfo'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'naive'},{'id': '119', 'type': 'block', 'children': ['120']},{'id': '120', 'type': 'if_statement', 'children': ['121', '126', '136']},{'id': '121', 'type': 'call', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '123', 'type': 'argument_list', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'naive'},{'id': '125', 'type': 'string', 'children': [], 'value': "'localize'"},{'id': '126', 'type': 'block', 'children': ['127']},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'assignment', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '130', 'type': 'call', 'children': ['131', '134']},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'naive'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'localize'},{'id': '134', 'type': 'argument_list', 'children': ['135']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '136', 'type': 'else_clause', 'children': ['137']},{'id': '137', 'type': 'block', 'children': ['138']},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '141', 'type': 'call', 'children': ['142', '145']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '145', 'type': 'argument_list', 'children': ['146']},{'id': '146', 'type': 'keyword_argument', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'tzinfo'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'naive'},{'id': '149', 'type': 'if_statement', 'children': ['150', '152']},{'id': '150', 'type': 'not_operator', 'children': ['151']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '152', 'type': 'block', 'children': ['153']},{'id': '153', 'type': 'return_statement', 'children': ['154']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '155', 'type': 'if_statement', 'children': ['156', '161', '176', '192']},{'id': '156', 'type': 'call', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '158', 'type': 'argument_list', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '160', 'type': 'string', 'children': [], 'value': "'normalize'"},{'id': '161', 'type': 'block', 'children': ['162']},{'id': '162', 'type': 'expression_statement', 'children': ['163']},{'id': '163', 'type': 'assignment', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '165', 'type': 'call', 'children': ['166', '169']},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'normalize'},{'id': '169', 'type': 'argument_list', 'children': ['170']},{'id': '170', 'type': 'call', 'children': ['171', '174']},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'astimezone'},{'id': '174', 'type': 'argument_list', 'children': ['175']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '176', 'type': 'elif_clause', 'children': ['177', '180']},{'id': '177', 'type': 'comparison_operator', 'children': ['178', '179'], 'value': '=='},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '179', 'type': 'string', 'children': [], 'value': "'naive'"},{'id': '180', 'type': 'block', 'children': ['181']},{'id': '181', 'type': 'expression_statement', 'children': ['182']},{'id': '182', 'type': 'assignment', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '184', 'type': 'call', 'children': ['185', '188']},{'id': '185', 'type': 'attribute', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '188', 'type': 'argument_list', 'children': ['189']},{'id': '189', 'type': 'keyword_argument', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'tzinfo'},{'id': '191', 'type': 'None', 'children': []},{'id': '192', 'type': 'else_clause', 'children': ['193']},{'id': '193', 'type': 'block', 'children': ['194']},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'assignment', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '197', 'type': 'call', 'children': ['198', '201']},{'id': '198', 'type': 'attribute', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'dt'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'astimezone'},{'id': '201', 'type': 'argument_list', 'children': ['202']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '203', 'type': 'return_statement', 'children': ['204']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'dt'} | def _process_tz(self, dt, naive, tz):
def _tz(t):
if t in (None, 'naive'):
return t
if t == 'local':
if __debug__ and not localtz:
raise ValueError("Requested conversion to local timezone, but `localtz` not installed.")
t = localtz
if not isinstance(t, tzinfo):
if __debug__ and not localtz:
raise ValueError("The `pytz` package must be installed to look up timezone: " + repr(t))
t = get_tz(t)
if not hasattr(t, 'normalize') and get_tz:
t = get_tz(t.tzname(dt))
return t
naive = _tz(naive)
tz = _tz(tz)
if not dt.tzinfo and naive:
if hasattr(naive, 'localize'):
dt = naive.localize(dt)
else:
dt = dt.replace(tzinfo=naive)
if not tz:
return dt
if hasattr(tz, 'normalize'):
dt = tz.normalize(dt.astimezone(tz))
elif tz == 'naive':
dt = dt.replace(tzinfo=None)
else:
dt = dt.astimezone(tz)
return dt |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '__dfs'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'layers'},{'id': '8', 'type': 'block', 'children': ['9', '58', '151']},{'id': '9', 'type': 'if_statement', 'children': ['10', '13']},{'id': '10', 'type': 'comparison_operator', 'children': ['11', '12'], 'value': '=='},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '12', 'type': 'integer', 'children': [], 'value': '0'},{'id': '13', 'type': 'block', 'children': ['14', '19', '47', '56']},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '17', 'type': 'list', 'children': ['18'], 'value': '[v]'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '19', 'type': 'while_statement', 'children': ['20', '27']},{'id': '20', 'type': 'comparison_operator', 'children': ['21', '26'], 'value': '!='},{'id': '21', 'type': 'subscript', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': '_dfs_parent'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '27', 'type': 'block', 'children': ['28', '39']},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'subscript', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '37', 'type': 'identifier', 'children': [], 'value': '_dfs_parent'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '42', 'type': 'subscript', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '45', 'type': 'identifier', 'children': [], 'value': '_dfs_parent'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '47', 'type': 'expression_statement', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '54']},{'id': '49', 'type': 'attribute', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '52', 'type': 'identifier', 'children': [], 'value': '_dfs_paths'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '56', 'type': 'return_statement', 'children': ['57']},{'id': '57', 'type': 'True', 'children': []},{'id': '58', 'type': 'for_statement', 'children': ['59', '60', '65']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'neighbour'},{'id': '60', 'type': 'subscript', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'identifier', 'children': [], 'value': '_graph'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'if_statement', 'children': ['67', '74']},{'id': '67', 'type': 'comparison_operator', 'children': ['68', '69'], 'value': 'in'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'neighbour'},{'id': '69', 'type': 'subscript', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'layers'},{'id': '71', 'type': 'binary_operator', 'children': ['72', '73'], 'value': '-'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '73', 'type': 'integer', 'children': [], 'value': '1'},{'id': '74', 'type': 'block', 'children': ['75', '83']},{'id': '75', 'type': 'if_statement', 'children': ['76', '81']},{'id': '76', 'type': 'comparison_operator', 'children': ['77', '78'], 'value': 'in'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'neighbour'},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '80', 'type': 'identifier', 'children': [], 'value': '_dfs_parent'},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'continue_statement', 'children': []},{'id': '83', 'type': 'if_statement', 'children': ['84', '128']},{'id': '84', 'type': 'boolean_operator', 'children': ['85', '106', '107'], 'value': 'or'},{'id': '85', 'type': '()', 'children': ['86']},{'id': '86', 'type': 'boolean_operator', 'children': ['87', '92'], 'value': 'and'},{'id': '87', 'type': 'comparison_operator', 'children': ['88', '89'], 'value': 'in'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'neighbour'},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '91', 'type': 'identifier', 'children': [], 'value': '_left'},{'id': '92', 'type': '()', 'children': ['93']},{'id': '93', 'type': 'boolean_operator', 'children': ['94', '99'], 'value': 'or'},{'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': 'not'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '98', 'type': 'identifier', 'children': [], 'value': '_matching'},{'id': '99', 'type': 'comparison_operator', 'children': ['100', '101'], 'value': '!='},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'neighbour'},{'id': '101', 'type': 'subscript', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '104', 'type': 'identifier', 'children': [], 'value': '_matching'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '106', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '107', 'type': '()', 'children': ['108']},{'id': '108', 'type': 'boolean_operator', 'children': ['109', '114'], 'value': 'and'},{'id': '109', 'type': 'comparison_operator', 'children': ['110', '111'], 'value': 'in'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'neighbour'},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '113', 'type': 'identifier', 'children': [], 'value': '_right'},{'id': '114', 'type': '()', 'children': ['115']},{'id': '115', 'type': 'boolean_operator', 'children': ['116', '121'], 'value': 'and'},{'id': '116', 'type': 'comparison_operator', 'children': ['117', '118'], 'value': 'in'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '120', 'type': 'identifier', 'children': [], 'value': '_matching'},{'id': '121', 'type': 'comparison_operator', 'children': ['122', '123'], 'value': '=='},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'neighbour'},{'id': '123', 'type': 'subscript', 'children': ['124', '127']},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '126', 'type': 'identifier', 'children': [], 'value': '_matching'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '128', 'type': 'block', 'children': ['129', '137']},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '136']},{'id': '131', 'type': 'subscript', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '134', 'type': 'identifier', 'children': [], 'value': '_dfs_parent'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'neighbour'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '137', 'type': 'if_statement', 'children': ['138', '148']},{'id': '138', 'type': 'call', 'children': ['139', '142']},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '141', 'type': 'identifier', 'children': [], 'value': '__dfs'},{'id': '142', 'type': 'argument_list', 'children': ['143', '144', '147']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'neighbour'},{'id': '144', 'type': 'binary_operator', 'children': ['145', '146'], 'value': '-'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '146', 'type': 'integer', 'children': [], 'value': '1'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'layers'},{'id': '148', 'type': 'block', 'children': ['149']},{'id': '149', 'type': 'return_statement', 'children': ['150']},{'id': '150', 'type': 'True', 'children': []},{'id': '151', 'type': 'return_statement', 'children': ['152']},{'id': '152', 'type': 'False', 'children': []} | def __dfs(self, v, index, layers):
if index == 0:
path = [v]
while self._dfs_parent[v] != v:
path.append(self._dfs_parent[v])
v = self._dfs_parent[v]
self._dfs_paths.append(path)
return True
for neighbour in self._graph[v]:
if neighbour in layers[index - 1]:
if neighbour in self._dfs_parent:
continue
if (neighbour in self._left and (v not in self._matching or neighbour != self._matching[v])) or \
(neighbour in self._right and (v in self._matching and neighbour == self._matching[v])):
self._dfs_parent[neighbour] = v
if self.__dfs(neighbour, index-1, layers):
return True
return False |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'login'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'password'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'login_token'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'block', 'children': ['11', '43', '66', '103']},{'id': '11', 'type': 'if_statement', 'children': ['12', '15']},{'id': '12', 'type': 'comparison_operator', 'children': ['13', '14'], 'value': 'is'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'login_token'},{'id': '14', 'type': 'None', 'children': []},{'id': '15', 'type': 'block', 'children': ['16', '33']},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'token_doc'},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '23', 'type': 'argument_list', 'children': ['24', '27', '30']},{'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '26', 'type': 'string', 'children': [], 'value': "'query'"},{'id': '27', 'type': 'keyword_argument', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'meta'},{'id': '29', 'type': 'string', 'children': [], 'value': "'tokens'"},{'id': '30', 'type': 'keyword_argument', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '32', 'type': 'string', 'children': [], 'value': "'login'"},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'login_token'},{'id': '36', 'type': 'subscript', 'children': ['37', '42']},{'id': '37', 'type': 'subscript', 'children': ['38', '41']},{'id': '38', 'type': 'subscript', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'token_doc'},{'id': '40', 'type': 'string', 'children': [], 'value': "'query'"},{'id': '41', 'type': 'string', 'children': [], 'value': "'tokens'"},{'id': '42', 'type': 'string', 'children': [], 'value': "'logintoken'"},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'assignment', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'login_doc'},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '50', 'type': 'argument_list', 'children': ['51', '54', '57', '60', '63']},{'id': '51', 'type': 'keyword_argument', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '53', 'type': 'string', 'children': [], 'value': '"clientlogin"'},{'id': '54', 'type': 'keyword_argument', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '57', 'type': 'keyword_argument', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'password'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'password'},{'id': '60', 'type': 'keyword_argument', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'logintoken'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'login_token'},{'id': '63', 'type': 'keyword_argument', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'loginreturnurl'},{'id': '65', 'type': 'string', 'children': [], 'value': '"http://example.org/"'},{'id': '66', 'type': 'if_statement', 'children': ['67', '74', '85']},{'id': '67', 'type': 'comparison_operator', 'children': ['68', '73'], 'value': '=='},{'id': '68', 'type': 'subscript', 'children': ['69', '72']},{'id': '69', 'type': 'subscript', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'login_doc'},{'id': '71', 'type': 'string', 'children': [], 'value': "'clientlogin'"},{'id': '72', 'type': 'string', 'children': [], 'value': "'status'"},{'id': '73', 'type': 'string', 'children': [], 'value': '"UI"'},{'id': '74', 'type': 'block', 'children': ['75']},{'id': '75', 'type': 'raise_statement', 'children': ['76']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'ClientInteractionRequest'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'from_doc'},{'id': '80', 'type': 'argument_list', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'login_token'},{'id': '82', 'type': 'subscript', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'login_doc'},{'id': '84', 'type': 'string', 'children': [], 'value': "'clientlogin'"},{'id': '85', 'type': 'elif_clause', 'children': ['86', '93']},{'id': '86', 'type': 'comparison_operator', 'children': ['87', '92'], 'value': '!='},{'id': '87', 'type': 'subscript', 'children': ['88', '91']},{'id': '88', 'type': 'subscript', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'login_doc'},{'id': '90', 'type': 'string', 'children': [], 'value': "'clientlogin'"},{'id': '91', 'type': 'string', 'children': [], 'value': "'status'"},{'id': '92', 'type': 'string', 'children': [], 'value': "'PASS'"},{'id': '93', 'type': 'block', 'children': ['94']},{'id': '94', 'type': 'raise_statement', 'children': ['95']},{'id': '95', 'type': 'call', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'LoginError'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'from_doc'},{'id': '99', 'type': 'argument_list', 'children': ['100']},{'id': '100', 'type': 'subscript', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'login_doc'},{'id': '102', 'type': 'string', 'children': [], 'value': "'clientlogin'"},{'id': '103', 'type': 'return_statement', 'children': ['104']},{'id': '104', 'type': 'subscript', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'login_doc'},{'id': '106', 'type': 'string', 'children': [], 'value': "'clientlogin'"} | def login(self, username, password, login_token=None):
if login_token is None:
token_doc = self.post(action='query', meta='tokens', type='login')
login_token = token_doc['query']['tokens']['logintoken']
login_doc = self.post(
action="clientlogin", username=username, password=password,
logintoken=login_token, loginreturnurl="http://example.org/")
if login_doc['clientlogin']['status'] == "UI":
raise ClientInteractionRequest.from_doc(
login_token, login_doc['clientlogin'])
elif login_doc['clientlogin']['status'] != 'PASS':
raise LoginError.from_doc(login_doc['clientlogin'])
return login_doc['clientlogin'] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'cut_levels'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'nodes'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'start_level'},{'id': '6', 'type': 'block', 'children': ['7', '11', '15', '146', '162']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'final'},{'id': '10', 'type': 'list', 'children': [], 'value': '[]'},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'removed'},{'id': '14', 'type': 'list', 'children': [], 'value': '[]'},{'id': '15', 'type': 'for_statement', 'children': ['16', '17', '18']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'nodes'},{'id': '18', 'type': 'block', 'children': ['19', '34', '52', '112']},{'id': '19', 'type': 'if_statement', 'children': ['20', '26']},{'id': '20', 'type': 'not_operator', 'children': ['21']},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '23', 'type': 'argument_list', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '25', 'type': 'string', 'children': [], 'value': "'level'"},{'id': '26', 'type': 'block', 'children': ['27', '33']},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'removed'},{'id': '33', 'type': 'continue_statement', 'children': []},{'id': '34', 'type': 'if_statement', 'children': ['35', '44']},{'id': '35', 'type': 'call', 'children': ['36', '41']},{'id': '36', 'type': 'attribute', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '41', 'type': 'argument_list', 'children': ['42', '43']},{'id': '42', 'type': 'string', 'children': [], 'value': "'soft_root'"},{'id': '43', 'type': 'False', 'children': []},{'id': '44', 'type': 'block', 'children': ['45', '51']},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '48', 'type': 'argument_list', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'removed'},{'id': '51', 'type': 'continue_statement', 'children': []},{'id': '52', 'type': 'if_statement', 'children': ['53', '58', '89', '104']},{'id': '53', 'type': 'comparison_operator', 'children': ['54', '57'], 'value': '=='},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'start_level'},{'id': '58', 'type': 'block', 'children': ['59', '66', '72']},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'call', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'final'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'parent'},{'id': '71', 'type': 'None', 'children': []},{'id': '72', 'type': 'if_statement', 'children': ['73', '82']},{'id': '73', 'type': 'boolean_operator', 'children': ['74', '78'], 'value': 'and'},{'id': '74', 'type': 'not_operator', 'children': ['75']},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'visible'},{'id': '78', 'type': 'not_operator', 'children': ['79']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '82', 'type': 'block', 'children': ['83']},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '86', 'type': 'argument_list', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'removed'},{'id': '89', 'type': 'elif_clause', 'children': ['90', '97']},{'id': '90', 'type': 'comparison_operator', 'children': ['91', '94'], 'value': '=='},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '94', 'type': 'binary_operator', 'children': ['95', '96'], 'value': '+'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'start_level'},{'id': '96', 'type': 'integer', 'children': [], 'value': '1'},{'id': '97', 'type': 'block', 'children': ['98']},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '103']},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '103', 'type': 'list', 'children': [], 'value': '[]'},{'id': '104', 'type': 'else_clause', 'children': ['105']},{'id': '105', 'type': 'block', 'children': ['106']},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'call', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '109', 'type': 'argument_list', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'removed'},{'id': '112', 'type': 'if_statement', 'children': ['113', '117']},{'id': '113', 'type': 'not_operator', 'children': ['114']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'visible'},{'id': '117', 'type': 'block', 'children': ['118', '122', '136']},{'id': '118', 'type': 'expression_statement', 'children': ['119']},{'id': '119', 'type': 'assignment', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'keep_node'},{'id': '121', 'type': 'False', 'children': []},{'id': '122', 'type': 'for_statement', 'children': ['123', '124', '127']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '127', 'type': 'block', 'children': ['128']},{'id': '128', 'type': 'expression_statement', 'children': ['129']},{'id': '129', 'type': 'assignment', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'keep_node'},{'id': '131', 'type': 'boolean_operator', 'children': ['132', '133'], 'value': 'or'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'keep_node'},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'visible'},{'id': '136', 'type': 'if_statement', 'children': ['137', '139']},{'id': '137', 'type': 'not_operator', 'children': ['138']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'keep_node'},{'id': '139', 'type': 'block', 'children': ['140']},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'call', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '143', 'type': 'argument_list', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'removed'},{'id': '146', 'type': 'for_statement', 'children': ['147', '148', '149']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'removed'},{'id': '149', 'type': 'block', 'children': ['150']},{'id': '150', 'type': 'if_statement', 'children': ['151', '154']},{'id': '151', 'type': 'comparison_operator', 'children': ['152', '153'], 'value': 'in'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'final'},{'id': '154', 'type': 'block', 'children': ['155']},{'id': '155', 'type': 'expression_statement', 'children': ['156']},{'id': '156', 'type': 'call', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'final'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '162', 'type': 'return_statement', 'children': ['163']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'final'} | def cut_levels(nodes, start_level):
final = []
removed = []
for node in nodes:
if not hasattr(node, 'level'):
remove(node, removed)
continue
if node.attr.get('soft_root', False):
remove(node, removed)
continue
if node.level == start_level:
final.append(node)
node.parent = None
if not node.visible and not node.children:
remove(node, removed)
elif node.level == start_level + 1:
node.children = []
else:
remove(node, removed)
if not node.visible:
keep_node = False
for child in node.children:
keep_node = keep_node or child.visible
if not keep_node:
remove(node, removed)
for node in removed:
if node in final:
final.remove(node)
return final |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'S'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'Document'},{'id': '5', 'type': 'list_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '7', 'type': 'block', 'children': ['8', '12', '115']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '11', 'type': 'list', 'children': [], 'value': '[]'},{'id': '12', 'type': 'for_statement', 'children': ['13', '14', '15']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '15', 'type': 'block', 'children': ['16', '39', '43', '62', '73', '90', '101']},{'id': '16', 'type': 'if_statement', 'children': ['17', '22']},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '19', 'type': 'argument_list', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '22', 'type': 'block', 'children': ['23', '29', '38']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '28']},{'id': '25', 'type': 'pattern_list', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'call', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'tuple', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '38', 'type': 'continue_statement', 'children': []},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'ASCENDING'},{'id': '43', 'type': 'if_statement', 'children': ['44', '51']},{'id': '44', 'type': 'not_operator', 'children': ['45']},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'string', 'children': [], 'value': "'__'"},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '55', 'type': 'call', 'children': ['56', '59']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '59', 'type': 'argument_list', 'children': ['60', '61']},{'id': '60', 'type': 'string', 'children': [], 'value': "'__'"},{'id': '61', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '62', 'type': 'if_statement', 'children': ['63', '68']},{'id': '63', 'type': 'comparison_operator', 'children': ['64', '67'], 'value': '=='},{'id': '64', 'type': 'subscript', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '66', 'type': 'integer', 'children': [], 'value': '0'},{'id': '67', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '68', 'type': 'block', 'children': ['69']},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'DESCENDING'},{'id': '73', 'type': 'if_statement', 'children': ['74', '81']},{'id': '74', 'type': 'comparison_operator', 'children': ['75', '78'], 'value': 'in'},{'id': '75', 'type': 'subscript', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '77', 'type': 'integer', 'children': [], 'value': '0'},{'id': '78', 'type': 'tuple', 'children': ['79', '80']},{'id': '79', 'type': 'string', 'children': [], 'value': "'+'"},{'id': '80', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'assignment', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '85', 'type': 'subscript', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '87', 'type': 'slice', 'children': ['88', '89']},{'id': '88', 'type': 'integer', 'children': [], 'value': '1'},{'id': '89', 'type': 'colon', 'children': []},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'assignment', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': '_field'},{'id': '93', 'type': 'call', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'traverse'},{'id': '95', 'type': 'argument_list', 'children': ['96', '97', '98']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'Document'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '98', 'type': 'keyword_argument', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'default'},{'id': '100', 'type': 'None', 'children': []},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '106', 'type': 'argument_list', 'children': ['107']},{'id': '107', 'type': 'tuple', 'children': ['108', '114']},{'id': '108', 'type': 'conditional_expression', 'children': ['109', '112', '113'], 'value': 'if'},{'id': '109', 'type': '()', 'children': ['110']},{'id': '110', 'type': 'unary_operator', 'children': ['111'], 'value': '~'},{'id': '111', 'type': 'identifier', 'children': [], 'value': '_field'},{'id': '112', 'type': 'identifier', 'children': [], 'value': '_field'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '115', 'type': 'return_statement', 'children': ['116']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'result'} | def S(Document, *fields):
result = []
for field in fields:
if isinstance(field, tuple):
field, direction = field
result.append((field, direction))
continue
direction = ASCENDING
if not field.startswith('__'):
field = field.replace('__', '.')
if field[0] == '-':
direction = DESCENDING
if field[0] in ('+', '-'):
field = field[1:]
_field = traverse(Document, field, default=None)
result.append(((~_field) if _field else field, direction))
return result |
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'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'digs'},{'id': '32', 'type': 'subscript', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'cnpj'},{'id': '34', 'type': 'slice', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'tam'},{'id': '36', 'type': 'colon', 'children': []},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'tot'},{'id': '40', 'type': 'integer', 'children': [], 'value': '0'},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '44', 'type': 'binary_operator', 'children': ['45', '46'], 'value': '-'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'tam'},{'id': '46', 'type': 'integer', 'children': [], 'value': '7'},{'id': '47', 'type': 'for_statement', 'children': ['48', '49', '56']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '49', 'type': 'call', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '51', 'type': 'argument_list', 'children': ['52', '53', '54']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'tam'},{'id': '53', 'type': 'integer', 'children': [], 'value': '0'},{'id': '54', 'type': 'unary_operator', 'children': ['55'], 'value': '-'},{'id': '55', 'type': 'integer', 'children': [], 'value': '1'},{'id': '56', 'type': 'block', 'children': ['57', '72', '78']},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'tot'},{'id': '60', 'type': 'binary_operator', 'children': ['61', '62'], 'value': '+'},{'id': '61', 'type': 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'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '77', 'type': 'integer', 'children': [], 'value': '1'},{'id': '78', 'type': 'if_statement', 'children': ['79', '82']},{'id': '79', 'type': 'comparison_operator', 'children': ['80', '81'], 'value': '<'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '81', 'type': 'integer', 'children': [], 'value': '2'},{'id': '82', 'type': 'block', 'children': ['83']},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'assignment', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '86', 'type': 'integer', 'children': [], 'value': '9'},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '90', 'type': 'conditional_expression', 'children': ['91', '92', '97'], 'value': 'if'},{'id': '91', 'type': 'integer', 'children': [], 'value': '0'},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '96'], 'value': '<'},{'id': '93', 'type': 'binary_operator', 'children': ['94', '95'], 'value': '%'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'tot'},{'id': '95', 'type': 'integer', 'children': [], 'value': '11'},{'id': '96', 'type': 'integer', 'children': [], 'value': '2'},{'id': '97', 'type': 'binary_operator', 'children': ['98', '99'], 'value': '-'},{'id': '98', 'type': 'integer', 'children': [], 'value': '11'},{'id': '99', 'type': '()', 'children': ['100']},{'id': '100', 'type': 'binary_operator', 'children': ['101', '102'], 'value': '%'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'tot'},{'id': '102', 'type': 'integer', 'children': [], 'value': '11'},{'id': '103', 'type': 'if_statement', 'children': ['104', '112']},{'id': '104', 'type': 'comparison_operator', 'children': ['105', '106'], 'value': '!='},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '106', 'type': 'call', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'subscript', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'digs'},{'id': '111', 'type': 'integer', 'children': [], 'value': '0'},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'return_statement', 'children': ['114']},{'id': '114', 'type': 'False', 'children': []},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'assignment', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'tam'},{'id': '118', 'type': 'binary_operator', 'children': ['119', '120'], 'value': '+'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'tam'},{'id': '120', 'type': 'integer', 'children': [], 'value': '1'},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'assignment', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '124', 'type': 'subscript', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'cnpj'},{'id': '126', 'type': 'slice', 'children': ['127', '128']},{'id': '127', 'type': 'colon', 'children': []},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'tam'},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'tot'},{'id': '132', 'type': 'integer', 'children': [], 'value': '0'},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '136', 'type': 'binary_operator', 'children': ['137', '138'], 'value': '-'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'tam'},{'id': '138', 'type': 'integer', 'children': [], 'value': '7'},{'id': '139', 'type': 'for_statement', 'children': ['140', '141', '148']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '141', 'type': 'call', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '143', 'type': 'argument_list', 'children': ['144', '145', '146']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'tam'},{'id': '145', 'type': 'integer', 'children': [], 'value': '0'},{'id': '146', 'type': 'unary_operator', 'children': ['147'], 'value': '-'},{'id': '147', 'type': 'integer', 'children': [], 'value': '1'},{'id': '148', 'type': 'block', 'children': ['149', '164', '170']},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'assignment', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'tot'},{'id': '152', 'type': 'binary_operator', 'children': ['153', '154'], 'value': '+'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'tot'},{'id': '154', 'type': 'binary_operator', 'children': ['155', '163'], 'value': '*'},{'id': '155', 'type': 'call', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '157', 'type': 'argument_list', 'children': ['158']},{'id': '158', 'type': 'subscript', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '160', 'type': 'binary_operator', 'children': ['161', '162'], 'value': '-'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'tam'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '167', 'type': 'binary_operator', 'children': ['168', '169'], 'value': '-'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '169', 'type': 'integer', 'children': [], 'value': '1'},{'id': '170', 'type': 'if_statement', 'children': ['171', '174']},{'id': '171', 'type': 'comparison_operator', 'children': ['172', '173'], 'value': '<'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '173', 'type': 'integer', 'children': [], 'value': '2'},{'id': '174', 'type': 'block', 'children': ['175']},{'id': '175', 'type': 'expression_statement', 'children': ['176']},{'id': '176', 'type': 'assignment', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '178', 'type': 'integer', 'children': [], 'value': '9'},{'id': '179', 'type': 'expression_statement', 'children': ['180']},{'id': '180', 'type': 'assignment', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '182', 'type': 'conditional_expression', 'children': ['183', '184', '189'], 'value': 'if'},{'id': '183', 'type': 'integer', 'children': [], 'value': '0'},{'id': '184', 'type': 'comparison_operator', 'children': ['185', '188'], 'value': '<'},{'id': '185', 'type': 'binary_operator', 'children': ['186', '187'], 'value': '%'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'tot'},{'id': '187', 'type': 'integer', 'children': [], 'value': '11'},{'id': '188', 'type': 'integer', 'children': [], 'value': '2'},{'id': '189', 'type': 'binary_operator', 'children': ['190', '191'], 'value': '-'},{'id': '190', 'type': 'integer', 'children': [], 'value': '11'},{'id': '191', 'type': '()', 'children': ['192']},{'id': '192', 'type': 'binary_operator', 'children': ['193', '194'], 'value': '%'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'tot'},{'id': '194', 'type': 'integer', 'children': [], 'value': '11'},{'id': '195', 'type': 'if_statement', 'children': ['196', '204']},{'id': '196', 'type': 'comparison_operator', 'children': ['197', '198'], 'value': '!='},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '198', 'type': 'call', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '200', 'type': 'argument_list', 'children': ['201']},{'id': '201', 'type': 'subscript', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'digs'},{'id': '203', 'type': 'integer', 'children': [], 'value': '1'},{'id': '204', 'type': 'block', 'children': ['205']},{'id': '205', 'type': 'return_statement', 'children': ['206']},{'id': '206', 'type': 'False', 'children': []},{'id': '207', 'type': 'return_statement', 'children': ['208']},{'id': '208', 'type': 'True', 'children': []} | def valid(self, cnpj):
if len(cnpj) != 14:
return False
tam = 12
nums = cnpj[:tam]
digs = cnpj[tam:]
tot = 0
pos = tam-7
for i in range(tam, 0, -1):
tot = tot + int(nums[tam-i])*pos
pos = pos - 1
if pos < 2:
pos = 9
res = 0 if tot % 11 < 2 else 11 - (tot % 11)
if res != int(digs[0]):
return False
tam = tam + 1
nums = cnpj[:tam]
tot = 0
pos = tam-7
for i in range(tam, 0, -1):
tot = tot + int(nums[tam-i])*pos
pos = pos - 1
if pos < 2:
pos = 9
res = 0 if tot % 11 < 2 else 11 - (tot % 11)
if res != int(digs[1]):
return False
return True |
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'value': '[True]'},{'id': '32', 'type': 'True', 'children': []},{'id': '33', 'type': 'comparison_operator', 'children': ['34', '39'], 'value': '!='},{'id': '34', 'type': 'subscript', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '36', 'type': 'slice', 'children': ['37', '38']},{'id': '37', 'type': 'integer', 'children': [], 'value': '1'},{'id': '38', 'type': 'colon', 'children': []},{'id': '39', 'type': 'subscript', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '41', 'type': 'slice', 'children': ['42', '43']},{'id': '42', 'type': 'colon', 'children': []},{'id': '43', 'type': 'unary_operator', 'children': ['44'], 'value': '-'},{'id': '44', 'type': 'integer', 'children': [], 'value': '1'},{'id': '45', 'type': 'if_statement', 'children': ['46', '47', '105']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'retainorder'},{'id': '47', 'type': 'block', 'children': ['48', '67', '97', '103']},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'DD'},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '55', 'type': 'argument_list', 'children': ['56', '63']},{'id': '56', 'type': 'subscript', 'children': ['57', '62']},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'D'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'nonzero'},{'id': '61', 'type': 'argument_list', 'children': []},{'id': '62', 'type': 'integer', 'children': [], 'value': '0'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'assignment', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '70', 'type': 'list_comprehension', 'children': ['71', '84']},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'subscript', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '76', 'type': 'slice', 'children': ['77', '78', '79']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '78', 'type': 'colon', 'children': []},{'id': '79', 'type': 'subscript', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'DD'},{'id': '81', 'type': 'binary_operator', 'children': ['82', '83'], 'value': '+'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '83', 'type': 'integer', 'children': [], 'value': '1'},{'id': '84', 'type': 'for_in_clause', 'children': ['85', '88']},{'id': '85', 'type': 'tuple_pattern', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '88', 'type': 'call', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'subscript', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'DD'},{'id': '93', 'type': 'slice', 'children': ['94', '95']},{'id': '94', 'type': 'colon', 'children': []},{'id': '95', 'type': 'unary_operator', 'children': ['96'], 'value': '-'},{'id': '96', 'type': 'integer', 'children': [], 'value': '1'},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'call', 'children': ['99', '102']},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '102', 'type': 'argument_list', 'children': []},{'id': '103', 'type': 'return_statement', 'children': ['104']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '105', 'type': 'else_clause', 'children': ['106']},{'id': '106', 'type': 'block', 'children': ['107']},{'id': '107', 'type': 'return_statement', 'children': ['108']},{'id': '108', 'type': 'list', 'children': ['109', '110'], 'value': '[D,s]'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'D'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 's'} | def arrayuniqify(X, retainorder=False):
s = X.argsort()
X = X[s]
D = np.append([True],X[1:] != X[:-1])
if retainorder:
DD = np.append(D.nonzero()[0],len(X))
ind = [min(s[x:DD[i+1]]) for (i,x) in enumerate(DD[:-1])]
ind.sort()
return ind
else:
return [D,s] |
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'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '18', 'type': 'subscript', 'children': ['19', '36']},{'id': '19', 'type': 'call', 'children': ['20', '35']},{'id': '20', 'type': 'attribute', 'children': ['21', '34']},{'id': '21', 'type': '()', 'children': ['22']},{'id': '22', 'type': 'comparison_operator', 'children': ['23', '28'], 'value': '!='},{'id': '23', 'type': 'subscript', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '25', 'type': 'slice', 'children': ['26', '27']},{'id': '26', 'type': 'integer', 'children': [], 'value': '1'},{'id': '27', 'type': 'colon', 'children': []},{'id': '28', 'type': 'subscript', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '30', 'type': 'slice', 'children': ['31', '32']},{'id': '31', 'type': 'colon', 'children': []},{'id': '32', 'type': 'unary_operator', 'children': ['33'], 'value': '-'},{'id': '33', 'type': 'integer', 'children': [], 'value': '1'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'nonzero'},{'id': '35', 'type': 'argument_list', 'children': []},{'id': '36', 'type': 'integer', 'children': [], 'value': '0'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '44', 'type': 'argument_list', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'list', 'children': ['52'], 'value': '[len(T)-1]'},{'id': '52', 'type': 'binary_operator', 'children': ['53', '57'], 'value': '-'},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '57', 'type': 'integer', 'children': [], 'value': '1'},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'M'},{'id': '61', 'type': 'subscript', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'R'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'searchsorted'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'D'},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'searchsorted'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '87', 'type': 'call', 'children': ['88', '91']},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '91', 'type': 'argument_list', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'list', 'children': ['99'], 'value': '[0]'},{'id': '99', 'type': 'integer', 'children': [], 'value': '0'},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'assignment', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'M'},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '107', 'type': 'argument_list', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'M'},{'id': '109', 'type': 'call', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'list', 'children': ['115'], 'value': '[0]'},{'id': '115', 'type': 'integer', 'children': [], 'value': '0'},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'A'},{'id': '119', 'type': 'binary_operator', 'children': ['120', '126'], 'value': '*'},{'id': '120', 'type': '()', 'children': ['121']},{'id': '121', 'type': 'comparison_operator', 'children': ['122', '125'], 'value': '=='},{'id': '122', 'type': 'subscript', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'D'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'D'},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'assignment', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'B'},{'id': '130', 'type': 'binary_operator', 'children': ['131', '137'], 'value': '*'},{'id': '131', 'type': '()', 'children': ['132']},{'id': '132', 'type': 'comparison_operator', 'children': ['133', '136'], 'value': '=='},{'id': '133', 'type': 'subscript', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'D'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '137', 'type': '()', 'children': ['138']},{'id': '138', 'type': 'binary_operator', 'children': ['139', '142'], 'value': '+'},{'id': '139', 'type': 'subscript', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'M'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'D'},{'id': '142', 'type': 'integer', 'children': [], 'value': '1'},{'id': '143', 'type': 'return_statement', 'children': ['144']},{'id': '144', 'type': 'list', 'children': ['145', '146'], 'value': '[A,B]'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'A'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'B'} | def equalspairs(X, Y):
T = Y.copy()
R = (T[1:] != T[:-1]).nonzero()[0]
R = np.append(R,np.array([len(T)-1]))
M = R[R.searchsorted(range(len(T)))]
D = T.searchsorted(X)
T = np.append(T,np.array([0]))
M = np.append(M,np.array([0]))
A = (T[D] == X) * D
B = (T[D] == X) * (M[D] + 1)
return [A,B] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '22']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'loadSV'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'titles'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'aligned'},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'byteorder'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'renamer'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'dictionary_splat_pattern', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '22', 'type': 'block', 'children': ['23', '34', '55', '76', '97', '135', '157']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '28']},{'id': '25', 'type': 'list_pattern', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'loadSVcols'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '32', 'type': 'dictionary_splat', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '34', 'type': 'if_statement', 'children': ['35', '42', '49']},{'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': 'in'},{'id': '36', 'type': 'string', 'children': [], 'value': "'names'"},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '41', 'type': 'argument_list', 'children': []},{'id': '42', 'type': 'block', 'children': ['43']},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'assignment', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '46', 'type': 'subscript', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '48', 'type': 'string', 'children': [], 'value': "'names'"},{'id': '49', 'type': 'else_clause', 'children': ['50']},{'id': '50', 'type': 'block', 'children': ['51']},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '54', 'type': 'None', 'children': []},{'id': '55', 'type': 'if_statement', 'children': ['56', '63', '70']},{'id': '56', 'type': 'comparison_operator', 'children': ['57', '58'], 'value': 'in'},{'id': '57', 'type': 'string', 'children': [], 'value': "'formats'"},{'id': '58', 'type': 'call', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '62', 'type': 'argument_list', 'children': []},{'id': '63', 'type': 'block', 'children': ['64']},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '67', 'type': 'subscript', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '69', 'type': 'string', 'children': [], 'value': "'formats'"},{'id': '70', 'type': 'else_clause', 'children': ['71']},{'id': '71', 'type': 'block', 'children': ['72']},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '75', 'type': 'None', 'children': []},{'id': '76', 'type': 'if_statement', 'children': ['77', '84', '91']},{'id': '77', 'type': 'comparison_operator', 'children': ['78', '79'], 'value': 'in'},{'id': '78', 'type': 'string', 'children': [], 'value': "'dtype'"},{'id': '79', 'type': 'call', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '83', 'type': 'argument_list', 'children': []},{'id': '84', 'type': 'block', 'children': ['85']},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '88', 'type': 'subscript', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '90', 'type': 'string', 'children': [], 'value': "'dtype'"},{'id': '91', 'type': 'else_clause', 'children': ['92']},{'id': '92', 'type': 'block', 'children': ['93']},{'id': '93', 'type': 'expression_statement', 'children': ['94']},{'id': '94', 'type': 'assignment', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '96', 'type': 'None', 'children': []},{'id': '97', 'type': 'if_statement', 'children': ['98', '101']},{'id': '98', 'type': 'comparison_operator', 'children': ['99', '100'], 'value': 'is'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'renamer'},{'id': '100', 'type': 'None', 'children': []},{'id': '101', 'type': 'block', 'children': ['102', '104', '111']},{'id': '102', 'type': 'print_statement', 'children': ['103']},{'id': '103', 'type': 'string', 'children': [], 'value': "'Trying user-given renamer ...'"},{'id': '104', 'type': 'expression_statement', 'children': ['105']},{'id': '105', 'type': 'assignment', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'renamed'},{'id': '107', 'type': 'call', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'renamer'},{'id': '109', 'type': 'argument_list', 'children': ['110']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '111', 'type': 'if_statement', 'children': ['112', '124', '131']},{'id': '112', 'type': 'comparison_operator', 'children': ['113', '117'], 'value': '=='},{'id': '113', 'type': 'call', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '115', 'type': 'argument_list', 'children': ['116']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'renamed'},{'id': '117', 'type': 'call', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'uniqify'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'renamed'},{'id': '124', 'type': 'block', 'children': ['125', '129']},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'renamed'},{'id': '129', 'type': 'print_statement', 'children': ['130']},{'id': '130', 'type': 'string', 'children': [], 'value': "'''... using renamed names (original names will be in return \n metadata)'''"},{'id': '131', 'type': 'else_clause', 'children': ['132']},{'id': '132', 'type': 'block', 'children': ['133']},{'id': '133', 'type': 'print_statement', 'children': ['134']},{'id': '134', 'type': 'string', 'children': [], 'value': "'... renamer failed to produce unique names, not using.'"},{'id': '135', 'type': 'if_statement', 'children': ['136', '150']},{'id': '136', 'type': 'boolean_operator', 'children': ['137', '138'], 'value': 'and'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '138', 'type': 'comparison_operator', 'children': ['139', '143'], 'value': '!='},{'id': '139', 'type': 'call', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '141', 'type': 'argument_list', 'children': ['142']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '143', 'type': 'call', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '145', 'type': 'argument_list', 'children': ['146']},{'id': '146', 'type': 'call', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'uniqify'},{'id': '148', 'type': 'argument_list', 'children': ['149']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '150', 'type': 'block', 'children': ['151', '153']},{'id': '151', 'type': 'print_statement', 'children': ['152']},{'id': '152', 'type': 'string', 'children': [], 'value': "'Names are not unique, reverting to default naming scheme.'"},{'id': '153', 'type': 'expression_statement', 'children': ['154']},{'id': '154', 'type': 'assignment', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '156', 'type': 'None', 'children': []},{'id': '157', 'type': 'return_statement', 'children': ['158']},{'id': '158', 'type': 'list', 'children': ['159', '191'], 'value': '[utils.fromarrays(columns, type=np.ndarray, dtype=dtype, \n shape=shape, formats=formats, names=names, \n titles=titles, aligned=aligned, \n byteorder=byteorder), metadata]'},{'id': '159', 'type': 'call', 'children': ['160', '163']},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'fromarrays'},{'id': '163', 'type': 'argument_list', 'children': ['164', '165', '170', '173', '176', '179', '182', '185', '188']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '165', 'type': 'keyword_argument', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '170', 'type': 'keyword_argument', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '173', 'type': 'keyword_argument', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '176', 'type': 'keyword_argument', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '179', 'type': 'keyword_argument', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '182', 'type': 'keyword_argument', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'titles'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'titles'},{'id': '185', 'type': 'keyword_argument', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'aligned'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'aligned'},{'id': '188', 'type': 'keyword_argument', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'byteorder'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'byteorder'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'metadata'} | def loadSV(fname, shape=None, titles=None, aligned=False, byteorder=None,
renamer=None, **kwargs):
[columns, metadata] = loadSVcols(fname, **kwargs)
if 'names' in metadata.keys():
names = metadata['names']
else:
names = None
if 'formats' in metadata.keys():
formats = metadata['formats']
else:
formats = None
if 'dtype' in metadata.keys():
dtype = metadata['dtype']
else:
dtype = None
if renamer is not None:
print 'Trying user-given renamer ...'
renamed = renamer(names)
if len(renamed) == len(uniqify(renamed)):
names = renamed
print '''... using renamed names (original names will be in return
metadata)'''
else:
print '... renamer failed to produce unique names, not using.'
if names and len(names) != len(uniqify(names)):
print 'Names are not unique, reverting to default naming scheme.'
names = None
return [utils.fromarrays(columns, type=np.ndarray, dtype=dtype,
shape=shape, formats=formats, names=names,
titles=titles, aligned=aligned,
byteorder=byteorder), metadata] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '22']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'loadSVrecs'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'uselines'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'skiprows'},{'id': '10', 'type': 'integer', 'children': [], 'value': '0'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'linefixer'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'verbosity'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_VERBOSITY'},{'id': '20', 'type': 'dictionary_splat_pattern', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '22', 'type': 'block', 'children': ['23', '46', '70', '81', '113', '134', '224', '238', '283', '289', '305']},{'id': '23', 'type': 'if_statement', 'children': ['24', '33']},{'id': '24', 'type': 'boolean_operator', 'children': ['25', '26'], 'value': 'and'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '26', 'type': 'call', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '28', 'type': 'argument_list', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'types'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'StringType'},{'id': '33', 'type': 'block', 'children': ['34', '37']},{'id': '34', 'type': 'import_statement', 'children': ['35']},{'id': '35', 'type': 'dotted_name', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'compile'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '52']},{'id': '48', 'type': 'list_pattern', 'children': ['49', '50', '51']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'inferedlines'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'WHOLETHING'},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'getmetadata'},{'id': '54', 'type': 'argument_list', 'children': ['55', '56', '59', '62', '65', '68']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'skiprows'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'skiprows'},{'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'linefixer'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'linefixer'},{'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'verbosity'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'verbosity'},{'id': '68', 'type': 'dictionary_splat', 'children': ['69']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '70', 'type': 'if_statement', 'children': ['71', '74']},{'id': '71', 'type': 'comparison_operator', 'children': ['72', '73'], 'value': 'is'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'uselines'},{'id': '73', 'type': 'None', 'children': []},{'id': '74', 'type': 'block', 'children': ['75']},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'uselines'},{'id': '78', 'type': 'tuple', 'children': ['79', '80']},{'id': '79', 'type': 'integer', 'children': [], 'value': '0'},{'id': '80', 'type': 'False', 'children': []},{'id': '81', 'type': 'if_statement', 'children': ['82', '86', '95', '106']},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'is_string_like'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '86', 'type': 'block', 'children': ['87']},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'fh'},{'id': '90', 'type': 'call', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '92', 'type': 'argument_list', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '94', 'type': 'string', 'children': [], 'value': "'rU'"},{'id': '95', 'type': 'elif_clause', 'children': ['96', '101']},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '98', 'type': 'argument_list', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '100', 'type': 'string', 'children': [], 'value': "'readline'"},{'id': '101', 'type': 'block', 'children': ['102']},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'assignment', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'fh'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '106', 'type': 'else_clause', 'children': ['107']},{'id': '107', 'type': 'block', 'children': ['108']},{'id': '108', 'type': 'raise_statement', 'children': ['109']},{'id': '109', 'type': 'call', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '111', 'type': 'argument_list', 'children': ['112']},{'id': '112', 'type': 'string', 'children': [], 'value': "'fname must be a string or file handle'"},{'id': '113', 'type': 'for_statement', 'children': ['114', '115', '127']},{'id': '114', 'type': 'identifier', 'children': [], 'value': '_ind'},{'id': '115', 'type': 'call', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '117', 'type': 'argument_list', 'children': ['118']},{'id': '118', 'type': 'binary_operator', 'children': ['119', '124'], 'value': '+'},{'id': '119', 'type': 'binary_operator', 'children': ['120', '121'], 'value': '+'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'skiprows'},{'id': '121', 'type': 'subscript', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'uselines'},{'id': '123', 'type': 'integer', 'children': [], 'value': '0'},{'id': '124', 'type': 'subscript', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '126', 'type': 'string', 'children': [], 'value': "'headerlines'"},{'id': '127', 'type': 'block', 'children': ['128']},{'id': '128', 'type': 'expression_statement', 'children': ['129']},{'id': '129', 'type': 'call', 'children': ['130', '133']},{'id': '130', 'type': 'attribute', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'fh'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'readline'},{'id': '133', 'type': 'argument_list', 'children': []},{'id': '134', 'type': 'if_statement', 'children': ['135', '138']},{'id': '135', 'type': 'boolean_operator', 'children': ['136', '137'], 'value': 'or'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'linefixer'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '138', 'type': 'block', 'children': ['139', '148', '166', '177', '201', '213', '220']},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'assignment', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'fh2'},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'tempfile'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'TemporaryFile'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'string', 'children': [], 'value': "'w+b'"},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'assignment', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '151', 'type': 'call', 'children': ['152', '164']},{'id': '152', 'type': 'attribute', 'children': ['153', '163']},{'id': '153', 'type': 'call', 'children': ['154', '161']},{'id': '154', 'type': 'attribute', 'children': ['155', '160']},{'id': '155', 'type': 'call', 'children': ['156', '159']},{'id': '156', 'type': 'attribute', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'fh'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'read'},{'id': '159', 'type': 'argument_list', 'children': []},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '161', 'type': 'argument_list', 'children': ['162']},{'id': '162', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '164', 'type': 'argument_list', 'children': ['165']},{'id': '165', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '166', 'type': 'if_statement', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'linefixer'},{'id': '168', 'type': 'block', 'children': ['169']},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'assignment', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '172', 'type': 'call', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '174', 'type': 'argument_list', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'linefixer'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '177', 'type': 'if_statement', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '179', 'type': 'block', 'children': ['180']},{'id': '180', 'type': 'expression_statement', 'children': ['181']},{'id': '181', 'type': 'assignment', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '183', 'type': 'call', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '185', 'type': 'argument_list', 'children': ['186', '200']},{'id': '186', 'type': 'lambda', 'children': ['187', '189']},{'id': '187', 'type': 'lambda_parameters', 'children': ['188']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '189', 'type': 'call', 'children': ['190', '193']},{'id': '190', 'type': 'attribute', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'delimiter_regex'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '193', 'type': 'argument_list', 'children': ['194', '199']},{'id': '194', 'type': 'attribute', 'children': ['195', '198']},{'id': '195', 'type': 'subscript', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '197', 'type': 'string', 'children': [], 'value': "'dialect'"},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'delimiter'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '201', 'type': 'expression_statement', 'children': ['202']},{'id': '202', 'type': 'call', 'children': ['203', '206']},{'id': '203', 'type': 'attribute', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'fh2'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '206', 'type': 'argument_list', 'children': ['207']},{'id': '207', 'type': 'call', 'children': ['208', '211']},{'id': '208', 'type': 'attribute', 'children': ['209', '210']},{'id': '209', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '211', 'type': 'argument_list', 'children': ['212']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '213', 'type': 'expression_statement', 'children': ['214']},{'id': '214', 'type': 'call', 'children': ['215', '218']},{'id': '215', 'type': 'attribute', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'fh2'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'seek'},{'id': '218', 'type': 'argument_list', 'children': ['219']},{'id': '219', 'type': 'integer', 'children': [], 'value': '0'},{'id': '220', 'type': 'expression_statement', 'children': ['221']},{'id': '221', 'type': 'assignment', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'fh'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'fh2'},{'id': '224', 'type': 'expression_statement', 'children': ['225']},{'id': '225', 'type': 'assignment', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'reader'},{'id': '227', 'type': 'call', 'children': ['228', '231']},{'id': '228', 'type': 'attribute', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'csv'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'reader'},{'id': '231', 'type': 'argument_list', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'fh'},{'id': '233', 'type': 'keyword_argument', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'dialect'},{'id': '235', 'type': 'subscript', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'metadata'},{'id': '237', 'type': 'string', 'children': [], 'value': "'dialect'"},{'id': '238', 'type': 'if_statement', 'children': ['239', '242', '274']},{'id': '239', 'type': 'subscript', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'uselines'},{'id': '241', 'type': 'integer', 'children': [], 'value': '1'},{'id': '242', 'type': 'block', 'children': ['243', '247']},{'id': '243', 'type': 'expression_statement', 'children': ['244']},{'id': '244', 'type': 'assignment', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'linelist'},{'id': '246', 'type': 'list', 'children': [], 'value': '[]'},{'id': '247', 'type': 'for_statement', 'children': ['248', '249', '250']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'ln'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'reader'},{'id': '250', 'type': 'block', 'children': ['251']},{'id': '251', 'type': 'if_statement', 'children': ['252', '263', '271']},{'id': '252', 'type': 'comparison_operator', 'children': ['253', '256'], 'value': '<='},{'id': '253', 'type': 'attribute', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'reader'},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'line_num'},{'id': '256', 'type': 'binary_operator', 'children': ['257', '260'], 'value': '-'},{'id': '257', 'type': 'subscript', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'uselines'},{'id': '259', 'type': 'integer', 'children': [], 'value': '1'},{'id': '260', 'type': 'subscript', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'uselines'},{'id': '262', 'type': 'integer', 'children': [], 'value': '0'},{'id': '263', 'type': 'block', 'children': ['264']},{'id': '264', 'type': 'expression_statement', 'children': ['265']},{'id': '265', 'type': 'call', 'children': ['266', '269']},{'id': '266', 'type': 'attribute', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'linelist'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '269', 'type': 'argument_list', 'children': ['270']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'ln'},{'id': '271', 'type': 'else_clause', 'children': ['272']},{'id': '272', 'type': 'block', 'children': ['273']},{'id': '273', 'type': 'break_statement', 'children': []},{'id': '274', 'type': 'else_clause', 'children': ['275']},{'id': '275', 'type': 'block', 'children': ['276']},{'id': '276', 'type': 'expression_statement', 'children': ['277']},{'id': '277', 'type': 'assignment', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'linelist'},{'id': '279', 'type': 'call', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '281', 'type': 'argument_list', 'children': ['282']},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'reader'},{'id': '283', 'type': 'expression_statement', 'children': ['284']},{'id': '284', 'type': 'call', 'children': ['285', '288']},{'id': '285', 'type': 'attribute', 'children': ['286', '287']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'fh'},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '288', 'type': 'argument_list', 'children': []},{'id': '289', 'type': 'if_statement', 'children': ['290', '296']},{'id': '290', 'type': 'comparison_operator', 'children': ['291', '295'], 'value': '=='},{'id': '291', 'type': 'subscript', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'linelist'},{'id': '293', 'type': 'unary_operator', 'children': ['294'], 'value': '-'},{'id': '294', 'type': 'integer', 'children': [], 'value': '1'},{'id': '295', 'type': 'list', 'children': [], 'value': '[]'},{'id': '296', 'type': 'block', 'children': ['297']},{'id': '297', 'type': 'expression_statement', 'children': ['298']},{'id': '298', 'type': 'call', 'children': ['299', '302']},{'id': '299', 'type': 'attribute', 'children': ['300', '301']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'linelist'},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '302', 'type': 'argument_list', 'children': ['303']},{'id': '303', 'type': 'unary_operator', 'children': ['304'], 'value': '-'},{'id': '304', 'type': 'integer', 'children': [], 'value': '1'},{'id': '305', 'type': 'return_statement', 'children': ['306']},{'id': '306', 'type': 'list', 'children': ['307', '308'], 'value': '[linelist,metadata]'},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'linelist'},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'metadata'} | def loadSVrecs(fname, uselines=None, skiprows=0, linefixer=None,
delimiter_regex=None, verbosity=DEFAULT_VERBOSITY, **metadata):
if delimiter_regex and isinstance(delimiter_regex, types.StringType):
import re
delimiter_regex = re.compile(delimiter_regex)
[metadata, inferedlines, WHOLETHING] = getmetadata(fname, skiprows=skiprows,
linefixer=linefixer,
delimiter_regex=delimiter_regex,
verbosity=verbosity, **metadata)
if uselines is None:
uselines = (0,False)
if is_string_like(fname):
fh = file(fname, 'rU')
elif hasattr(fname, 'readline'):
fh = fname
else:
raise ValueError('fname must be a string or file handle')
for _ind in range(skiprows+uselines[0] + metadata['headerlines']):
fh.readline()
if linefixer or delimiter_regex:
fh2 = tempfile.TemporaryFile('w+b')
F = fh.read().strip('\n').split('\n')
if linefixer:
F = map(linefixer,F)
if delimiter_regex:
F = map(lambda line:
delimiter_regex.sub(metadata['dialect'].delimiter, line), F)
fh2.write('\n'.join(F))
fh2.seek(0)
fh = fh2
reader = csv.reader(fh, dialect=metadata['dialect'])
if uselines[1]:
linelist = []
for ln in reader:
if reader.line_num <= uselines[1] - uselines[0]:
linelist.append(ln)
else:
break
else:
linelist = list(reader)
fh.close()
if linelist[-1] == []:
linelist.pop(-1)
return [linelist,metadata] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9', '13']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'dflt_interval'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'typed_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '7', 'type': 'type', 'children': ['8']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '9', 'type': 'type', 'children': ['10']},{'id': '10', 'type': 'tuple', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '13', 'type': 'block', 'children': ['14', '21', '25', '29', '82', '107', '113', '121']},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'string', 'children': [], 'value': "'RevocationCache.dflt_interval >>>'"},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'fro'},{'id': '24', 'type': 'None', 'children': []},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '28', 'type': 'None', 'children': []},{'id': '29', 'type': 'for_statement', 'children': ['30', '31', '32']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '32', 'type': 'block', 'children': ['33', '42', '48']},{'id': '33', 'type': 'if_statement', 'children': ['34', '40']},{'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': '!='},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'rev_reg_id2cred_def_id'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'continue_statement', 'children': []},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '48', 'type': 'if_statement', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'rr_delta_frames'},{'id': '52', 'type': 'block', 'children': ['53', '72']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '56', 'type': 'attribute', 'children': ['57', '71']},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '59', 'type': 'argument_list', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'rr_delta_frames'},{'id': '63', 'type': 'keyword_argument', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '65', 'type': 'lambda', 'children': ['66', '68']},{'id': '66', 'type': 'lambda_parameters', 'children': ['67']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'fro'},{'id': '75', 'type': 'call', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '77', 'type': 'argument_list', 'children': ['78', '81']},{'id': '78', 'type': 'boolean_operator', 'children': ['79', '80'], 'value': 'or'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'fro'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '82', 'type': 'if_statement', 'children': ['83', '88']},{'id': '83', 'type': 'not_operator', 'children': ['84']},{'id': '84', 'type': '()', 'children': ['85']},{'id': '85', 'type': 'boolean_operator', 'children': ['86', '87'], 'value': 'and'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'fro'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '88', 'type': 'block', 'children': ['89', '97']},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '94', 'type': 'argument_list', 'children': ['95', '96']},{'id': '95', 'type': 'string', 'children': [], 'value': "'RevocationCache.dflt_interval <!< No data for default non-revoc interval on cred def id %s'"},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '97', 'type': 'raise_statement', 'children': ['98']},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'CacheIndex'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'string', 'children': [], 'value': "'No data for default non-revoc interval on cred def id {}'"},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'assignment', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '110', 'type': 'tuple', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'fro'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '118', 'type': 'argument_list', 'children': ['119', '120']},{'id': '119', 'type': 'string', 'children': [], 'value': "'RevocationCache.dflt_interval <<< %s'"},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '121', 'type': 'return_statement', 'children': ['122']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'rv'} | def dflt_interval(self, cd_id: str) -> (int, int):
LOGGER.debug('RevocationCache.dflt_interval >>>')
fro = None
to = None
for rr_id in self:
if cd_id != rev_reg_id2cred_def_id(rr_id):
continue
entry = self[rr_id]
if entry.rr_delta_frames:
to = max(entry.rr_delta_frames, key=lambda f: f.to).to
fro = min(fro or to, to)
if not (fro and to):
LOGGER.debug(
'RevocationCache.dflt_interval <!< No data for default non-revoc interval on cred def id %s',
cd_id)
raise CacheIndex('No data for default non-revoc interval on cred def id {}'.format(cd_id))
rv = (fro, to)
LOGGER.debug('RevocationCache.dflt_interval <<< %s', rv)
return rv |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13', '15']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse'},{'id': '3', 'type': 'parameters', 'children': ['4', '8']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'base_dir'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '8', 'type': 'typed_default_parameter', 'children': ['9', '10', '12']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'timestamp'},{'id': '10', 'type': 'type', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '12', 'type': 'None', 'children': []},{'id': '13', 'type': 'type', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '15', 'type': 'block', 'children': ['16', '25', '48', '100', '111', '135', '178', '249', '393', '401']},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'call', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '21', 'type': 'argument_list', 'children': ['22', '23', '24']},{'id': '22', 'type': 'string', 'children': [], 'value': "'parse >>> base_dir: %s, timestamp: %s'"},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'base_dir'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'timestamp'},{'id': '25', 'type': 'if_statement', 'children': ['26', '31']},{'id': '26', 'type': 'not_operator', 'children': ['27']},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'isdir'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 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'rr_cache_entry'},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'cull'},{'id': '347', 'type': 'argument_list', 'children': ['348']},{'id': '348', 'type': 'True', 'children': []},{'id': '349', 'type': 'expression_statement', 'children': ['350']},{'id': '350', 'type': 'assignment', 'children': ['351', '354']},{'id': '351', 'type': 'attribute', 'children': ['352', '353']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'rr_cache_entry'},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'rr_state_frames'},{'id': '354', 'type': 'list_comprehension', 'children': ['355', '367']},{'id': '355', 'type': 'call', 'children': ['356', '357']},{'id': '356', 'type': 'identifier', 'children': [], 'value': 'RevRegUpdateFrame'},{'id': '357', 'type': 'argument_list', 'children': ['358', '361', '364']},{'id': '358', 'type': 'subscript', 'children': ['359', '360']},{'id': '359', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '360', 'type': 'string', 'children': [], 'value': "'_to'"},{'id': '361', 'type': 'subscript', 'children': ['362', '363']},{'id': '362', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '363', 'type': 'string', 'children': [], 'value': "'_timestamp'"},{'id': '364', 'type': 'subscript', 'children': ['365', '366']},{'id': '365', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '366', 'type': 'string', 'children': [], 'value': "'_rr_update'"},{'id': '367', 'type': 'for_in_clause', 'children': ['368', '369']},{'id': '368', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '369', 'type': 'subscript', 'children': ['370', '371']},{'id': '370', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '371', 'type': 'string', 'children': [], 'value': "'rr_state_frames'"},{'id': '372', 'type': 'expression_statement', 'children': ['373']},{'id': '373', 'type': 'call', 'children': ['374', '377']},{'id': '374', 'type': 'attribute', 'children': ['375', '376']},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'rr_cache_entry'},{'id': '376', 'type': 'identifier', 'children': [], 'value': 'cull'},{'id': '377', 'type': 'argument_list', 'children': ['378']},{'id': '378', 'type': 'False', 'children': []},{'id': '379', 'type': 'expression_statement', 'children': ['380']},{'id': '380', 'type': 'assignment', 'children': ['381', '384']},{'id': '381', 'type': 'subscript', 'children': ['382', '383']},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'REVO_CACHE'},{'id': '383', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '384', 'type': 'identifier', 'children': [], 'value': 'rr_cache_entry'},{'id': '385', 'type': 'expression_statement', 'children': ['386']},{'id': '386', 'type': 'call', 'children': ['387', '390']},{'id': '387', 'type': 'attribute', 'children': ['388', '389']},{'id': '388', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '390', 'type': 'argument_list', 'children': ['391', '392']},{'id': '391', 'type': 'string', 'children': [], 'value': "'Revocation cache imported entry for rev reg id %s'"},{'id': '392', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '393', 'type': 'expression_statement', 'children': ['394']},{'id': '394', 'type': 'call', 'children': ['395', '398']},{'id': '395', 'type': 'attribute', 'children': ['396', '397']},{'id': '396', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '397', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '398', 'type': 'argument_list', 'children': ['399', '400']},{'id': '399', 'type': 'string', 'children': [], 'value': "'parse <<< %s'"},{'id': '400', 'type': 'identifier', 'children': [], 'value': 'timestamp'},{'id': '401', 'type': 'return_statement', 'children': ['402']},{'id': '402', 'type': 'identifier', 'children': [], 'value': 'timestamp'} | def parse(base_dir: str, timestamp: int = None) -> int:
LOGGER.debug('parse >>> base_dir: %s, timestamp: %s', base_dir, timestamp)
if not isdir(base_dir):
LOGGER.info('No cache archives available: not feeding cache')
LOGGER.debug('parse <<< None')
return None
if not timestamp:
timestamps = [int(t) for t in listdir(base_dir) if t.isdigit()]
if timestamps:
timestamp = max(timestamps)
else:
LOGGER.info('No cache archives available: not feeding cache')
LOGGER.debug('parse <<< None')
return None
timestamp_dir = join(base_dir, str(timestamp))
if not isdir(timestamp_dir):
LOGGER.error('No such archived cache directory: %s', timestamp_dir)
LOGGER.debug('parse <<< None')
return None
with SCHEMA_CACHE.lock:
with open(join(timestamp_dir, 'schema'), 'r') as archive:
schemata = json.loads(archive.read())
SCHEMA_CACHE.feed(schemata)
with CRED_DEF_CACHE.lock:
with open(join(timestamp_dir, 'cred_def'), 'r') as archive:
cred_defs = json.loads(archive.read())
for cd_id in cred_defs:
if cd_id in CRED_DEF_CACHE:
LOGGER.warning('Cred def cache already has cred def on %s: skipping', cd_id)
else:
CRED_DEF_CACHE[cd_id] = cred_defs[cd_id]
LOGGER.info('Cred def cache imported cred def for cred def id %s', cd_id)
with REVO_CACHE.lock:
with open(join(timestamp_dir, 'revocation'), 'r') as archive:
rr_cache_entries = json.loads(archive.read())
for (rr_id, entry) in rr_cache_entries.items():
if rr_id in REVO_CACHE:
LOGGER.warning('Revocation cache already has entry on %s: skipping', rr_id)
else:
rr_cache_entry = RevoCacheEntry(entry['rev_reg_def'])
rr_cache_entry.rr_delta_frames = [
RevRegUpdateFrame(
f['_to'],
f['_timestamp'],
f['_rr_update']) for f in entry['rr_delta_frames']
]
rr_cache_entry.cull(True)
rr_cache_entry.rr_state_frames = [
RevRegUpdateFrame(
f['_to'],
f['_timestamp'],
f['_rr_update']) for f in entry['rr_state_frames']
]
rr_cache_entry.cull(False)
REVO_CACHE[rr_id] = rr_cache_entry
LOGGER.info('Revocation cache imported entry for rev reg id %s', rr_id)
LOGGER.debug('parse <<< %s', timestamp)
return timestamp |
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'type': 'list_comprehension', 'children': ['16', '21']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': '_convert_hbf_meta_val_for_xml'},{'id': '18', 'type': 'argument_list', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '21', 'type': 'for_in_clause', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'is_literal'},{'id': '27', 'type': 'True', 'children': []},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'content'},{'id': '31', 'type': 'None', 'children': []},{'id': '32', 'type': 'if_statement', 'children': ['33', '38', '79']},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '35', 'type': 'argument_list', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '38', 'type': 'block', 'children': ['39', '43']},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '43', 'type': 'if_statement', 'children': ['44', '47', '52']},{'id': '44', 'type': 'comparison_operator', 'children': ['45', '46'], 'value': 'in'},{'id': '45', 'type': 'string', 'children': [], 'value': "'@href'"},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '47', 'type': 'block', 'children': ['48']},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'is_literal'},{'id': '51', 'type': 'False', 'children': []},{'id': '52', 'type': 'else_clause', 'children': ['53']},{'id': '53', 'type': 'block', 'children': ['54', '63']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'content'},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'string', 'children': [], 'value': "'$'"},{'id': '63', 'type': 'if_statement', 'children': ['64', '74']},{'id': '64', 'type': 'boolean_operator', 'children': ['65', '70'], 'value': 'and'},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '67', 'type': 'argument_list', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'content'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': '_contains_hbf_meta_keys'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '74', 'type': 'block', 'children': ['75']},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'is_literal'},{'id': '78', 'type': 'False', 'children': []},{'id': '79', 'type': 'else_clause', 'children': ['80']},{'id': '80', 'type': 'block', 'children': ['81', '85']},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'assignment', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '84', 'type': 'dictionary', 'children': []},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'content'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '89', 'type': 'if_statement', 'children': ['90', '91', '135']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'is_literal'},{'id': '91', 'type': 'block', 'children': ['92', '100', '108', '124']},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'setdefault'},{'id': '97', 'type': 'argument_list', 'children': ['98', '99']},{'id': '98', 'type': 'string', 'children': [], 'value': "'@xsi:type'"},{'id': '99', 'type': 'string', 'children': [], 'value': "'nex:LiteralMeta'"},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'setdefault'},{'id': '105', 'type': 'argument_list', 'children': ['106', '107']},{'id': '106', 'type': 'string', 'children': [], 'value': "'@property'"},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '108', 'type': 'if_statement', 'children': ['109', '112']},{'id': '109', 'type': 'comparison_operator', 'children': ['110', '111'], 'value': 'is'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'content'},{'id': '111', 'type': 'None', 'children': []},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'setdefault'},{'id': '118', 'type': 'argument_list', 'children': ['119', '120']},{'id': '119', 'type': 'string', 'children': [], 'value': "'@datatype'"},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': '_python_instance_to_nexml_meta_datatype'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'content'},{'id': '124', 'type': 'if_statement', 'children': ['125', '128']},{'id': '125', 'type': 'comparison_operator', 'children': ['126', '127'], 'value': 'is'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '128', 'type': 'block', 'children': ['129']},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '134']},{'id': '131', 'type': 'subscript', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '133', 'type': 'string', 'children': [], 'value': "'$'"},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'content'},{'id': '135', 'type': 'else_clause', 'children': ['136']},{'id': '136', 'type': 'block', 'children': ['137', '145']},{'id': '137', 'type': 'expression_statement', 'children': ['138']},{'id': '138', 'type': 'call', 'children': ['139', '142']},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'setdefault'},{'id': '142', 'type': 'argument_list', 'children': ['143', '144']},{'id': '143', 'type': 'string', 'children': [], 'value': "'@xsi:type'"},{'id': '144', 'type': 'string', 'children': [], 'value': "'nex:ResourceMeta'"},{'id': '145', 'type': 'expression_statement', 'children': ['146']},{'id': '146', 'type': 'call', 'children': ['147', '150']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'ret'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'setdefault'},{'id': '150', 'type': 'argument_list', 'children': ['151', '152']},{'id': '151', 'type': 'string', 'children': [], 'value': "'@rel'"},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '153', 'type': 'return_statement', 'children': ['154']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'ret'} | def _convert_hbf_meta_val_for_xml(key, val):
if isinstance(val, list):
return [_convert_hbf_meta_val_for_xml(key, i) for i in val]
is_literal = True
content = None
if isinstance(val, dict):
ret = val
if '@href' in val:
is_literal = False
else:
content = val.get('$')
if isinstance(content, dict) and _contains_hbf_meta_keys(val):
is_literal = False
else:
ret = {}
content = val
if is_literal:
ret.setdefault('@xsi:type', 'nex:LiteralMeta')
ret.setdefault('@property', key)
if content is not None:
ret.setdefault('@datatype', _python_instance_to_nexml_meta_datatype(content))
if ret is not val:
ret['$'] = content
else:
ret.setdefault('@xsi:type', 'nex:ResourceMeta')
ret.setdefault('@rel', key)
return ret |
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'identifier', 'children': [], 'value': 'method'},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'default_length'},{'id': '19', 'type': 'conditional_expression', 'children': ['20', '26', '31'], 'value': 'if'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'defaults'},{'id': '26', 'type': 'comparison_operator', 'children': ['27', '30'], 'value': 'is'},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '29', 'type': 'identifier', 'children': [], 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['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '52', 'type': 'comparison_operator', 'children': ['53', '56'], 'value': 'is'},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'varargs'},{'id': '56', 'type': 'None', 'children': []},{'id': '57', 'type': 'block', 'children': ['58']},{'id': '58', 'type': 'raise_statement', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'InvalidParamsError'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'string', 'children': [], 'value': '"Too many parameters"'},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'remaining_parameters'},{'id': '66', 'type': 'binary_operator', 'children': ['67', '73'], 'value': '-'},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '77', 'type': 'if_statement', 'children': ['78', '81']},{'id': '78', 'type': 'comparison_operator', 'children': ['79', '80'], 'value': '>'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'remaining_parameters'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'default_length'},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'raise_statement', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'InvalidParamsError'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'string', 'children': [], 'value': '"Not enough parameters"'},{'id': '87', 'type': 'elif_clause', 'children': ['88', '93']},{'id': '88', 'type': 'call', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '90', 'type': 'argument_list', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '93', 'type': 'block', 'children': ['94', '108', '128', '147', '161']},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'missing_parameters'},{'id': '97', 'type': 'list_comprehension', 'children': ['98', '99', '104']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '99', 'type': 'for_in_clause', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '104', 'type': 'if_clause', 'children': ['105']},{'id': '105', 'type': 'comparison_operator', 'children': ['106', '107'], 'value': 'not'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'assignment', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'default_parameters'},{'id': '111', 'type': 'call', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'subscript', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '118', 'type': 'slice', 'children': ['119', '127']},{'id': '119', 'type': 'binary_operator', 'children': ['120', '126'], 'value': '-'},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'default_length'},{'id': '127', 'type': 'colon', 'children': []},{'id': '128', 'type': 'for_statement', 'children': ['129', '130', '131']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'missing_parameters'},{'id': '131', 'type': 'block', 'children': ['132']},{'id': '132', 'type': 'if_statement', 'children': ['133', '136']},{'id': '133', 'type': 'comparison_operator', 'children': ['134', '135'], 'value': 'not'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'default_parameters'},{'id': '136', 'type': 'block', 'children': ['137']},{'id': '137', 'type': 'raise_statement', 'children': ['138']},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'InvalidParamsError'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'call', 'children': ['142', '145']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'string', 'children': [], 'value': '"Parameter {} has not been satisfied"'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '145', 'type': 'argument_list', 'children': ['146']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '147', 'type': 'expression_statement', 'children': ['148']},{'id': '148', 'type': 'assignment', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'extra_params'},{'id': '150', 'type': 'list_comprehension', 'children': ['151', '152', '155']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '152', 'type': 'for_in_clause', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'parameters'},{'id': '155', 'type': 'if_clause', 'children': ['156']},{'id': '156', 'type': 'comparison_operator', 'children': ['157', '158'], 'value': 'not'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '161', 'type': 'if_statement', 'children': ['162', '174']},{'id': '162', 'type': 'boolean_operator', 'children': ['163', '169'], 'value': 'and'},{'id': '163', 'type': 'comparison_operator', 'children': ['164', '168'], 'value': '>'},{'id': '164', 'type': 'call', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '166', 'type': 'argument_list', 'children': ['167']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'extra_params'},{'id': '168', 'type': 'integer', 'children': [], 'value': '0'},{'id': '169', 'type': 'comparison_operator', 'children': ['170', '173'], 'value': 'is'},{'id': '170', 'type': 'attribute', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'argspec'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'keywords'},{'id': '173', 'type': 'None', 'children': []},{'id': '174', 'type': 'block', 'children': ['175']},{'id': '175', 'type': 'raise_statement', 'children': ['176']},{'id': '176', 'type': 'call', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'InvalidParamsError'},{'id': '178', 'type': 'argument_list', 'children': ['179']},{'id': '179', 'type': 'string', 'children': [], 'value': '"Too many parameters"'} | def validate_params_match(method, parameters):
argspec = inspect.getargspec(method)
default_length = len(argspec.defaults) if argspec.defaults is not None else 0
if isinstance(parameters, list):
if len(parameters) > len(argspec.args) and argspec.varargs is None:
raise InvalidParamsError("Too many parameters")
remaining_parameters = len(argspec.args) - len(parameters)
if remaining_parameters > default_length:
raise InvalidParamsError("Not enough parameters")
elif isinstance(parameters, dict):
missing_parameters = [key for key in argspec.args if key not in parameters]
default_parameters = set(argspec.args[len(argspec.args) - default_length:])
for key in missing_parameters:
if key not in default_parameters:
raise InvalidParamsError("Parameter {} has not been satisfied".format(key))
extra_params = [key for key in parameters if key not in argspec.args]
if len(extra_params) > 0 and argspec.keywords is None:
raise InvalidParamsError("Too many parameters") |
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'children': [], 'value': 'str'},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '20', 'type': 'list_comprehension', 'children': ['21', '26']},{'id': '21', 'type': 'call', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '25', 'type': 'argument_list', 'children': []},{'id': '26', 'type': 'for_in_clause', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '28', 'type': 'call', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'string', 'children': [], 'value': "','"},{'id': '34', 'type': 'if_statement', 'children': ['35', '40', '151']},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '37', 'type': 'argument_list', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'if_statement', 'children': ['42', '69', '120']},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'list_comprehension', 'children': ['46', '66']},{'id': '46', 'type': 'boolean_operator', 'children': ['47', '60', '61'], 'value': 'or'},{'id': '47', 'type': 'boolean_operator', 'children': ['48', '55'], 'value': 'or'},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '50', 'type': 'argument_list', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '55', 'type': 'call', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '57', 'type': 'argument_list', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '60', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '63', 'type': 'argument_list', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '66', 'type': 'for_in_clause', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '69', 'type': 'block', 'children': ['70', '88', '103']},{'id': '70', 'type': 'assert_statement', 'children': ['71', '87']},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'list_comprehension', 'children': ['75', '84']},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '80'], 'value': '=='},{'id': '76', 'type': 'call', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '78', 'type': 'argument_list', 'children': ['79']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '84', 'type': 'for_in_clause', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '87', 'type': 'string', 'children': [], 'value': "'Trying to add columns of wrong length.'"},{'id': '88', 'type': 'assert_statement', 'children': ['89', '102']},{'id': '89', 'type': 'boolean_operator', 'children': ['90', '93'], 'value': 'and'},{'id': '90', 'type': 'comparison_operator', 'children': ['91', '92'], 'value': '!='},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '92', 'type': 'None', 'children': []},{'id': '93', 'type': 'comparison_operator', 'children': ['94', '98'], 'value': '=='},{'id': '94', 'type': 'call', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '96', 'type': 'argument_list', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '102', 'type': 'string', 'children': [], 'value': "'Number of columns to add must equal number of new names.'"},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'assignment', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '106', 'type': 'call', 'children': ['107', '110']},{'id': '107', 'type': 'attribute', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'fromarrays'},{'id': '110', 'type': 'argument_list', 'children': ['111', '112', '117']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '112', 'type': 'keyword_argument', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '117', 'type': 'keyword_argument', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '120', 'type': 'else_clause', 'children': ['121']},{'id': '121', 'type': 'block', 'children': ['122', '133']},{'id': '122', 'type': 'assert_statement', 'children': ['123', '132']},{'id': '123', 'type': 'comparison_operator', 'children': ['124', '128'], 'value': '=='},{'id': '124', 'type': 'call', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '128', 'type': 'call', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '132', 'type': 'string', 'children': [], 'value': "'Trying to add column of wrong length.'"},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '136', 'type': 'call', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'fromarrays'},{'id': '140', 'type': 'argument_list', 'children': ['141', '143', '148']},{'id': '141', 'type': 'list', 'children': ['142'], 'value': '[cols]'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '143', 'type': 'keyword_argument', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '145', 'type': 'attribute', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '151', 'type': 'else_clause', 'children': ['152']},{'id': '152', 'type': 'block', 'children': ['153', '161']},{'id': '153', 'type': 'assert_statement', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '156', 'type': 'argument_list', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '161', 'type': 'if_statement', 'children': ['162', '169']},{'id': '162', 'type': 'comparison_operator', 'children': ['163', '168'], 'value': '=='},{'id': '163', 'type': 'attribute', 'children': ['164', '167']},{'id': '164', 'type': 'attribute', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '168', 'type': 'None', 'children': []},{'id': '169', 'type': 'block', 'children': ['170']},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '173', 'type': 'call', 'children': ['174', '177']},{'id': '174', 'type': 'attribute', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'fromarrays'},{'id': '177', 'type': 'argument_list', 'children': ['178', '180', '185']},{'id': '178', 'type': 'list', 'children': ['179'], 'value': '[cols]'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '180', 'type': 'keyword_argument', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '182', 'type': 'attribute', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '185', 'type': 'keyword_argument', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '188', 'type': 'expression_statement', 'children': ['189']},{'id': '189', 'type': 'assignment', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'Replacements'},{'id': '191', 'type': 'list_comprehension', 'children': ['192', '193', '200']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '193', 'type': 'for_in_clause', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '195', 'type': 'attribute', 'children': ['196', '199']},{'id': '196', 'type': 'attribute', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '200', 'type': 'if_clause', 'children': ['201']},{'id': '201', 'type': 'comparison_operator', 'children': ['202', '203'], 'value': 'in'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '203', 'type': 'attribute', 'children': ['204', '207']},{'id': '204', 'type': 'attribute', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '208', 'type': 'if_statement', 'children': ['209', '215']},{'id': '209', 'type': 'comparison_operator', 'children': ['210', '214'], 'value': '>'},{'id': '210', 'type': 'call', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '212', 'type': 'argument_list', 'children': ['213']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'Replacements'},{'id': '214', 'type': 'integer', 'children': [], 'value': '0'},{'id': '215', 'type': 'block', 'children': ['216']},{'id': '216', 'type': 'expression_statement', 'children': ['217']},{'id': '217', 'type': 'call', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '219', 'type': 'argument_list', 'children': ['220', '221']},{'id': '220', 'type': 'string', 'children': [], 'value': "'Replacing columns'"},{'id': '221', 'type': 'list_comprehension', 'children': ['222', '223', '230']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '223', 'type': 'for_in_clause', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '225', 'type': 'attribute', 'children': ['226', '229']},{'id': '226', 'type': 'attribute', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '230', 'type': 'if_clause', 'children': ['231']},{'id': '231', 'type': 'comparison_operator', 'children': ['232', '233'], 'value': 'in'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '233', 'type': 'attribute', 'children': ['234', '237']},{'id': '234', 'type': 'attribute', 'children': ['235', '236']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '238', 'type': 'return_statement', 'children': ['239']},{'id': '239', 'type': 'call', 'children': ['240', '243']},{'id': '240', 'type': 'attribute', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'fromarrays'},{'id': '243', 'type': 'argument_list', 'children': ['244', '286', '291']},{'id': '244', 'type': 'binary_operator', 'children': ['245', '267'], 'value': '+'},{'id': '245', 'type': 'list_comprehension', 'children': ['246', '260']},{'id': '246', 'type': 'conditional_expression', 'children': ['247', '250', '257'], 'value': 'if'},{'id': '247', 'type': 'subscript', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '250', 'type': 'comparison_operator', 'children': ['251', '252'], 'value': 'not'},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '252', 'type': 'attribute', 'children': ['253', '256']},{'id': '253', 'type': 'attribute', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '257', 'type': 'subscript', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '260', 'type': 'for_in_clause', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '262', 'type': 'attribute', 'children': ['263', '266']},{'id': '263', 'type': 'attribute', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '267', 'type': 'list_comprehension', 'children': ['268', '271', '278']},{'id': '268', 'type': 'subscript', 'children': ['269', '270']},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '271', 'type': 'for_in_clause', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '273', 'type': 'attribute', 'children': ['274', '277']},{'id': '274', 'type': 'attribute', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '278', 'type': 'if_clause', 'children': ['279']},{'id': '279', 'type': 'comparison_operator', 'children': ['280', '281'], 'value': 'not'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '281', 'type': 'attribute', 'children': ['282', '285']},{'id': '282', 'type': 'attribute', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '286', 'type': 'keyword_argument', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '288', 'type': 'attribute', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '291', 'type': 'keyword_argument', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '293', 'type': 'binary_operator', 'children': ['294', '302'], 'value': '+'},{'id': '294', 'type': 'call', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '296', 'type': 'argument_list', 'children': ['297']},{'id': '297', 'type': 'attribute', 'children': ['298', '301']},{'id': '298', 'type': 'attribute', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '302', 'type': 'list_comprehension', 'children': ['303', '304', '311']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '304', 'type': 'for_in_clause', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '306', 'type': 'attribute', 'children': ['307', '310']},{'id': '307', 'type': 'attribute', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '311', 'type': 'if_clause', 'children': ['312']},{'id': '312', 'type': 'comparison_operator', 'children': ['313', '314'], 'value': 'not'},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '314', 'type': 'attribute', 'children': ['315', '318']},{'id': '315', 'type': 'attribute', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'names'} | def addcols(X, cols, names=None):
if isinstance(names,str):
names = [n.strip() for n in names.split(',')]
if isinstance(cols, list):
if any([isinstance(x,np.ndarray) or isinstance(x,list) or \
isinstance(x,tuple) for x in cols]):
assert all([len(x) == len(X) for x in cols]), \
'Trying to add columns of wrong length.'
assert names != None and len(cols) == len(names), \
'Number of columns to add must equal number of new names.'
cols = utils.fromarrays(cols,type=np.ndarray,names = names)
else:
assert len(cols) == len(X), 'Trying to add column of wrong length.'
cols = utils.fromarrays([cols], type=np.ndarray,names=names)
else:
assert isinstance(cols, np.ndarray)
if cols.dtype.names == None:
cols = utils.fromarrays([cols],type=np.ndarray, names=names)
Replacements = [a for a in cols.dtype.names if a in X.dtype.names]
if len(Replacements) > 0:
print('Replacing columns',
[a for a in cols.dtype.names if a in X.dtype.names])
return utils.fromarrays(
[X[a] if a not in cols.dtype.names else cols[a] for a in X.dtype.names] +
[cols[a] for a in cols.dtype.names if a not in X.dtype.names],
type=np.ndarray,
names=list(X.dtype.names) + [a for a in cols.dtype.names
if a not in X.dtype.names]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'replace'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'old'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'strict'},{'id': '9', 'type': 'True', 'children': []},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '12', 'type': 'None', 'children': []},{'id': '13', 'type': 'default_parameter', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '15', 'type': 'None', 'children': []},{'id': '16', 'type': 'block', 'children': ['17', '46', '65']},{'id': '17', 'type': 'if_statement', 'children': ['18', '21', '30']},{'id': '18', 'type': 'comparison_operator', 'children': ['19', '20'], 'value': '=='},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '20', 'type': 'None', 'children': []},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '25', 'type': 'attribute', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '30', 'type': 'elif_clause', 'children': ['31', '36']},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '33', 'type': 'argument_list', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'string', 'children': [], 'value': "','"},{'id': '46', 'type': 'if_statement', 'children': ['47', '50']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': '=='},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '49', 'type': 'None', 'children': []},{'id': '50', 'type': 'block', 'children': ['51']},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'ones'},{'id': '58', 'type': 'argument_list', 'children': ['59', '64']},{'id': '59', 'type': 'tuple', 'children': ['60']},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '65', 'type': 'if_statement', 'children': ['66', '67', '127']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'strict'},{'id': '67', 'type': 'block', 'children': ['68', '77']},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '71', 'type': 'call', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '77', 'type': 'for_statement', 'children': ['78', '79', '80']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '80', 'type': 'block', 'children': ['81', '101']},{'id': '81', 'type': 'if_statement', 'children': ['82', '91']},{'id': '82', 'type': 'comparison_operator', 'children': ['83', '88'], 'value': '<'},{'id': '83', 'type': 'subscript', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '91', 'type': 'block', 'children': ['92']},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'call', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '95', 'type': 'argument_list', 'children': ['96', '97', '98', '99', '100']},{'id': '96', 'type': 'string', 'children': [], 'value': "'WARNING: dtype of column'"},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '98', 'type': 'string', 'children': [], 'value': "'is inferior to dtype of '"},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '100', 'type': 'string', 'children': [], 'value': "'which may cause problems.'"},{'id': '101', 'type': 'try_statement', 'children': ['102', '118']},{'id': '102', 'type': 'block', 'children': ['103']},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'assignment', 'children': ['105', '117']},{'id': '105', 'type': 'subscript', 'children': ['106', '109']},{'id': '106', 'type': 'subscript', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '109', 'type': 'subscript', 'children': ['110', '116']},{'id': '110', 'type': '()', 'children': ['111']},{'id': '111', 'type': 'comparison_operator', 'children': ['112', '115'], 'value': '=='},{'id': '112', 'type': 'subscript', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'old'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '118', 'type': 'except_clause', 'children': ['119']},{'id': '119', 'type': 'block', 'children': ['120']},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'call', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '123', 'type': 'argument_list', 'children': ['124', '125', '126']},{'id': '124', 'type': 'string', 'children': [], 'value': "'Replacement not made on column'"},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '126', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '127', 'type': 'else_clause', 'children': ['128']},{'id': '128', 'type': 'block', 'children': ['129']},{'id': '129', 'type': 'for_statement', 'children': ['130', '131', '132']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'cols'},{'id': '132', 'type': 'block', 'children': ['133', '137']},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'QuickRep'},{'id': '136', 'type': 'True', 'children': []},{'id': '137', 'type': 'try_statement', 'children': ['138', '152', '162']},{'id': '138', 'type': 'block', 'children': ['139']},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'assignment', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'colstr'},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'string', 'children': [], 'value': "''"},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'subscript', 'children': ['148', '151']},{'id': '148', 'type': 'subscript', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '152', 'type': 'except_clause', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '154', 'type': 'block', 'children': ['155']},{'id': '155', 'type': 'expression_statement', 'children': ['156']},{'id': '156', 'type': 'call', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '158', 'type': 'argument_list', 'children': ['159', '160', '161']},{'id': '159', 'type': 'string', 'children': [], 'value': "'Not replacing in column'"},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '161', 'type': 'string', 'children': [], 'value': "'due to type mismatch.'"},{'id': '162', 'type': 'else_clause', 'children': ['163']},{'id': '163', 'type': 'block', 'children': ['164', '184', '199', '269', '326', '345']},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'avoid'},{'id': '167', 'type': 'list_comprehension', 'children': ['168', '172']},{'id': '168', 'type': 'call', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'ord'},{'id': '170', 'type': 'argument_list', 'children': ['171']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '172', 'type': 'for_in_clause', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '174', 'type': 'call', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'uniqify'},{'id': '178', 'type': 'argument_list', 'children': ['179']},{'id': '179', 'type': 'binary_operator', 'children': ['180', '183'], 'value': '+'},{'id': '180', 'type': 'binary_operator', 'children': ['181', '182'], 'value': '+'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'old'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'colstr'},{'id': '184', 'type': 'expression_statement', 'children': ['185']},{'id': '185', 'type': 'assignment', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'ok'},{'id': '187', 'type': 'call', 'children': ['188', '197']},{'id': '188', 'type': 'attribute', 'children': ['189', '196']},{'id': '189', 'type': 'call', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '191', 'type': 'argument_list', 'children': ['192']},{'id': '192', 'type': 'call', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '194', 'type': 'argument_list', 'children': ['195']},{'id': '195', 'type': 'integer', 'children': [], 'value': '256'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'difference'},{'id': '197', 'type': 'argument_list', 'children': ['198']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'avoid'},{'id': '199', 'type': 'if_statement', 'children': ['200', '206', '219']},{'id': '200', 'type': 'comparison_operator', 'children': ['201', '205'], 'value': '>'},{'id': '201', 'type': 'call', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '203', 'type': 'argument_list', 'children': ['204']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'ok'},{'id': '205', 'type': 'integer', 'children': [], 'value': '0'},{'id': '206', 'type': 'block', 'children': ['207']},{'id': '207', 'type': 'expression_statement', 'children': ['208']},{'id': '208', 'type': 'assignment', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '210', 'type': 'call', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'chr'},{'id': '212', 'type': 'argument_list', 'children': ['213']},{'id': '213', 'type': 'subscript', 'children': ['214', '218']},{'id': '214', 'type': 'call', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '216', 'type': 'argument_list', 'children': ['217']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'ok'},{'id': '218', 'type': 'integer', 'children': [], 'value': '0'},{'id': '219', 'type': 'else_clause', 'children': ['220']},{'id': '220', 'type': 'block', 'children': ['221', '236']},{'id': '221', 'type': 'expression_statement', 'children': ['222']},{'id': '222', 'type': 'assignment', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'ok'},{'id': '224', 'type': 'call', 'children': ['225', '234']},{'id': '225', 'type': 'attribute', 'children': ['226', '233']},{'id': '226', 'type': 'call', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '228', 'type': 'argument_list', 'children': ['229']},{'id': '229', 'type': 'call', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '231', 'type': 'argument_list', 'children': ['232']},{'id': '232', 'type': 'integer', 'children': [], 'value': '65536'},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'difference'},{'id': '234', 'type': 'argument_list', 'children': ['235']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'avoid'},{'id': '236', 'type': 'if_statement', 'children': ['237', '243', '256']},{'id': '237', 'type': 'comparison_operator', 'children': ['238', '242'], 'value': '>'},{'id': '238', 'type': 'call', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '240', 'type': 'argument_list', 'children': ['241']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'ok'},{'id': '242', 'type': 'integer', 'children': [], 'value': '0'},{'id': '243', 'type': 'block', 'children': ['244']},{'id': '244', 'type': 'expression_statement', 'children': ['245']},{'id': '245', 'type': 'assignment', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '247', 'type': 'call', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'unichr'},{'id': '249', 'type': 'argument_list', 'children': ['250']},{'id': '250', 'type': 'subscript', 'children': ['251', '255']},{'id': '251', 'type': 'call', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '253', 'type': 'argument_list', 'children': ['254']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'ok'},{'id': '255', 'type': 'integer', 'children': [], 'value': '0'},{'id': '256', 'type': 'else_clause', 'children': ['257']},{'id': '257', 'type': 'block', 'children': ['258', '265']},{'id': '258', 'type': 'expression_statement', 'children': ['259']},{'id': '259', 'type': 'call', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '261', 'type': 'argument_list', 'children': ['262', '263', '264']},{'id': '262', 'type': 'string', 'children': [], 'value': "'All unicode characters represented in column'"},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '264', 'type': 'string', 'children': [], 'value': "', can\\t replace quickly.'"},{'id': '265', 'type': 'expression_statement', 'children': ['266']},{'id': '266', 'type': 'assignment', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'QuickRep'},{'id': '268', 'type': 'False', 'children': []},{'id': '269', 'type': 'if_statement', 'children': ['270', '271', '301']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'QuickRep'},{'id': '271', 'type': 'block', 'children': ['272']},{'id': '272', 'type': 'expression_statement', 'children': ['273']},{'id': '273', 'type': 'assignment', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'newrows'},{'id': '275', 'type': 'call', 'children': ['276', '279']},{'id': '276', 'type': 'attribute', 'children': ['277', '278']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '279', 'type': 'argument_list', 'children': ['280']},{'id': '280', 'type': 'call', 'children': ['281', '299']},{'id': '281', 'type': 'attribute', 'children': ['282', '298']},{'id': '282', 'type': 'call', 'children': ['283', '295']},{'id': '283', 'type': 'attribute', 'children': ['284', '294']},{'id': '284', 'type': 'call', 'children': ['285', '288']},{'id': '285', 'type': 'attribute', 'children': ['286', '287']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '288', 'type': 'argument_list', 'children': ['289']},{'id': '289', 'type': 'subscript', 'children': ['290', '293']},{'id': '290', 'type': 'subscript', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '295', 'type': 'argument_list', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'old'},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '299', 'type': 'argument_list', 'children': ['300']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '301', 'type': 'else_clause', 'children': ['302']},{'id': '302', 'type': 'block', 'children': ['303']},{'id': '303', 'type': 'expression_statement', 'children': ['304']},{'id': '304', 'type': 'assignment', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'newrows'},{'id': '306', 'type': 'call', 'children': ['307', '310']},{'id': '307', 'type': 'attribute', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '310', 'type': 'argument_list', 'children': ['311']},{'id': '311', 'type': 'list_comprehension', 'children': ['312', '319']},{'id': '312', 'type': 'call', 'children': ['313', '316']},{'id': '313', 'type': 'attribute', 'children': ['314', '315']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'aa'},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '316', 'type': 'argument_list', 'children': ['317', '318']},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'old'},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '319', 'type': 'for_in_clause', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'aa'},{'id': '321', 'type': 'subscript', 'children': ['322', '325']},{'id': '322', 'type': 'subscript', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '326', 'type': 'expression_statement', 'children': ['327']},{'id': '327', 'type': 'assignment', 'children': ['328', '333']},{'id': '328', 'type': 'subscript', 'children': ['329', '332']},{'id': '329', 'type': 'subscript', 'children': ['330', '331']},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '331', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '333', 'type': 'call', 'children': ['334', '343']},{'id': '334', 'type': 'subscript', 'children': ['335', '338']},{'id': '335', 'type': 'attribute', 'children': ['336', '337']},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'cast'},{'id': '338', 'type': 'subscript', 'children': ['339', '342']},{'id': '339', 'type': 'attribute', 'children': ['340', '341']},{'id': '340', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '342', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '343', 'type': 'argument_list', 'children': ['344']},{'id': '344', 'type': 'identifier', 'children': [], 'value': 'newrows'},{'id': '345', 'type': 'if_statement', 'children': ['346', '355']},{'id': '346', 'type': 'comparison_operator', 'children': ['347', '350'], 'value': '>'},{'id': '347', 'type': 'attribute', 'children': ['348', '349']},{'id': '348', 'type': 'identifier', 'children': [], 'value': 'newrows'},{'id': '349', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '350', 'type': 'subscript', 'children': ['351', '354']},{'id': '351', 'type': 'attribute', 'children': ['352', '353']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '354', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '355', 'type': 'block', 'children': ['356']},{'id': '356', 'type': 'expression_statement', 'children': ['357']},{'id': '357', 'type': 'call', 'children': ['358', '359']},{'id': '358', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '359', 'type': 'argument_list', 'children': ['360', '361', '362']},{'id': '360', 'type': 'string', 'children': [], 'value': "'WARNING: dtype of column'"},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '362', 'type': 'concatenated_string', 'children': ['363', '364', '365']},{'id': '363', 'type': 'string', 'children': [], 'value': "'is inferior to the '"},{'id': '364', 'type': 'string', 'children': [], 'value': "'dtype of its replacement which may cause problems '"},{'id': '365', 'type': 'string', 'children': [], 'value': "'(ends of strings might get chopped off).'"} | def replace(X, old, new, strict=True, cols=None, rows=None):
if cols == None:
cols = X.dtype.names
elif isinstance(cols, str):
cols = cols.split(',')
if rows == None:
rows = np.ones((len(X),), bool)
if strict:
new = np.array(new)
for a in cols:
if X.dtype[a] < new.dtype:
print('WARNING: dtype of column', a,
'is inferior to dtype of ', new,
'which may cause problems.')
try:
X[a][(X[a] == old)[rows]] = new
except:
print('Replacement not made on column', a, '.')
else:
for a in cols:
QuickRep = True
try:
colstr = ''.join(X[a][rows])
except TypeError:
print('Not replacing in column', a, 'due to type mismatch.')
else:
avoid = [ord(o) for o in utils.uniqify(old + new + colstr)]
ok = set(range(256)).difference(avoid)
if len(ok) > 0:
sep = chr(list(ok)[0])
else:
ok = set(range(65536)).difference(avoid)
if len(ok) > 0:
sep = unichr(list(ok)[0])
else:
print('All unicode characters represented in column',
a, ', can\t replace quickly.')
QuickRep = False
if QuickRep:
newrows = np.array(sep.join(X[a][rows])
.replace(old, new).split(sep))
else:
newrows = np.array([aa.replace(old,new) for aa in
X[a][rows]])
X[a][rows] = np.cast[X.dtype[a]](newrows)
if newrows.dtype > X.dtype[a]:
print('WARNING: dtype of column', a, 'is inferior to the '
'dtype of its replacement which may cause problems '
'(ends of strings might get chopped off).') |
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Implemented by the tabarray method\n :func:`tabular.tab.tabarray.rowstack` which uses \n :func:`tabular.tabarray.tab_rowstack`.\n **Parameters**\n **seq** : sequence of numpy recarrays\n List, tuple, etc. of numpy recarrays to stack vertically.\n **mode** : string in ['nulls', 'commons', 'abort']\n Denotes how to proceed if the recarrays have different\n dtypes, e.g. different sets of named columns.\n * if `mode` == ``nulls``, the resulting set of columns is\n determined by the union of the dtypes of all recarrays\n to be stacked, and missing data is filled with null \n values as defined by \n :func:`tabular.spreadsheet.nullvalue`; this is the \n default mode.\n * elif `mode` == ``commons``, the resulting set of \n columns is determined by the intersection of the dtypes \n of all recarrays to be stacked, e.g. common columns.\n * elif `mode` == ``abort``, raise an error when the\n recarrays to stack have different dtypes.\n **Returns**\n **out** : numpy ndarray with structured dtype\n Result of vertically stacking the arrays in `seq`.\n **See also:** `numpy.vstack \n <http://docs.scipy.org/doc/numpy/reference/generated/numpy.vstack.html>`_.\n '''"},{'id': '14', 'type': 'if_statement', 'children': ['15', '18']},{'id': '15', 'type': 'comparison_operator', 'children': ['16', '17'], 'value': '=='},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'nullvals'},{'id': '17', 'type': 'None', 'children': []},{'id': '18', 'type': 'block', 'children': ['19']},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'nullvals'},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_NULLVALUEFORMAT'},{'id': '25', 'type': 'if_statement', 'children': ['26', '32', '333']},{'id': '26', 'type': 'comparison_operator', 'children': ['27', '31'], 'value': '>'},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '31', 'type': 'integer', 'children': [], 'value': '1'},{'id': '32', 'type': 'block', 'children': ['33', '43', '88']},{'id': '33', 'type': 'assert_statement', 'children': ['34', '40', '41']},{'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': 'in'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '36', 'type': 'list', 'children': ['37', '38', '39'], 'value': "['commons','nulls','abort']"},{'id': '37', 'type': 'string', 'children': [], 'value': "'commons'"},{'id': '38', 'type': 'string', 'children': [], 'value': "'nulls'"},{'id': '39', 'type': 'string', 'children': [], 'value': "'abort'"},{'id': '40', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '41', 'type': '()', 'children': ['42']},{'id': '42', 'type': 'string', 'children': [], 'value': '\'"mode" argument must either by "commons", "abort", or "nulls".\''},{'id': '43', 'type': 'if_statement', 'children': ['44', '47']},{'id': '44', 'type': 'comparison_operator', 'children': ['45', '46'], 'value': '=='},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '46', 'type': 'string', 'children': [], 'value': "'abort'"},{'id': '47', 'type': 'block', 'children': ['48']},{'id': '48', 'type': 'if_statement', 'children': ['49', '76', '82']},{'id': '49', 'type': 'not_operator', 'children': ['50']},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'list_comprehension', 'children': ['54', '73']},{'id': '54', 'type': 'comparison_operator', 'children': ['55', '63'], 'value': '=='},{'id': '55', 'type': 'call', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'attribute', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'attribute', 'children': ['67', '72']},{'id': '67', 'type': 'attribute', 'children': ['68', '71']},{'id': '68', 'type': 'subscript', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '70', 'type': 'integer', 'children': [], 'value': '0'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '73', 'type': 'for_in_clause', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '76', 'type': 'block', 'children': ['77']},{'id': '77', 'type': 'raise_statement', 'children': ['78']},{'id': '78', 'type': 'call', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'string', 'children': [], 'value': "'Some column names are different.'"},{'id': '82', 'type': 'else_clause', 'children': ['83']},{'id': '83', 'type': 'block', 'children': ['84']},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 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'type': 'identifier', 'children': [], 'value': 's'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '118', 'type': 'if_clause', 'children': ['119']},{'id': '119', 'type': 'comparison_operator', 'children': ['120', '125'], 'value': '!='},{'id': '120', 'type': 'attribute', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '125', 'type': 'None', 'children': []},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '129', 'type': 'list_comprehension', 'children': ['130', '160']},{'id': '130', 'type': 'attribute', 'children': ['131', '159']},{'id': '131', 'type': 'call', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '133', 'type': 'argument_list', 'children': ['134']},{'id': '134', 'type': 'list_comprehension', 'children': ['135', '140', '143']},{'id': '135', 'type': 'subscript', 'children': ['136', '139']},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'att'},{'id': '140', 'type': 'for_in_clause', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '143', 'type': 'if_clause', 'children': ['144']},{'id': '144', 'type': 'boolean_operator', 'children': ['145', '152'], 'value': 'and'},{'id': '145', 'type': 'comparison_operator', 'children': ['146', '151'], 'value': '!='},{'id': '146', 'type': 'attribute', 'children': ['147', '150']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '151', 'type': 'None', 'children': []},{'id': '152', 'type': 'comparison_operator', 'children': ['153', '154'], 'value': 'in'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'att'},{'id': '154', 'type': 'attribute', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '160', 'type': 'for_in_clause', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'att'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'assignment', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '166', 'type': 'call', 'children': ['167', '170']},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '170', 'type': 'argument_list', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '173', 'type': 'argument_list', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '176', 'type': 'return_statement', 'children': ['177']},{'id': '177', 'type': 'call', 'children': ['178', '181']},{'id': '178', 'type': 'attribute', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'fromarrays'},{'id': '181', 'type': 'argument_list', 'children': ['182', '235', '240']},{'id': '182', 'type': 'list_comprehension', 'children': ['183', '226']},{'id': '183', 'type': 'call', 'children': ['184', '187']},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'listunion'},{'id': '187', 'type': 'argument_list', 'children': ['188']},{'id': '188', 'type': 'list_comprehension', 'children': ['189', '223']},{'id': '189', 'type': 'conditional_expression', 'children': ['190', '197', '213'], 'value': 'if'},{'id': '190', 'type': 'call', 'children': ['191', '196']},{'id': '191', 'type': 'attribute', 'children': ['192', '195']},{'id': '192', 'type': 'subscript', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'att'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'tolist'},{'id': '196', 'type': 'argument_list', 'children': []},{'id': '197', 'type': '()', 'children': ['198']},{'id': '198', 'type': 'boolean_operator', 'children': ['199', '206'], 'value': 'and'},{'id': '199', 'type': 'comparison_operator', 'children': ['200', '205'], 'value': '!='},{'id': '200', 'type': 'attribute', 'children': ['201', '204']},{'id': '201', 'type': 'attribute', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '205', 'type': 'None', 'children': []},{'id': '206', 'type': 'comparison_operator', 'children': ['207', '208'], 'value': 'in'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'att'},{'id': '208', 'type': 'attribute', 'children': ['209', '212']},{'id': '209', 'type': 'attribute', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '213', 'type': 'binary_operator', 'children': ['214', '219'], 'value': '*'},{'id': '214', 'type': 'list', 'children': ['215'], 'value': '[nullvals(format)]'},{'id': '215', 'type': 'call', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'nullvals'},{'id': '217', 'type': 'argument_list', 'children': ['218']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '219', 'type': 'call', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '221', 'type': 'argument_list', 'children': ['222']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '223', 'type': 'for_in_clause', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '226', 'type': 'for_in_clause', 'children': ['227', '230']},{'id': '227', 'type': 'tuple_pattern', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'att'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '230', 'type': 'call', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '232', 'type': 'argument_list', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '235', 'type': 'keyword_argument', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '237', 'type': 'attribute', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '240', 'type': 'keyword_argument', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '243', 'type': 'elif_clause', 'children': ['244', '247']},{'id': '244', 'type': 'comparison_operator', 'children': ['245', '246'], 'value': '=='},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '246', 'type': 'string', 'children': [], 'value': "'commons'"},{'id': '247', 'type': 'block', 'children': ['248', '281', '302']},{'id': '248', 'type': 'expression_statement', 'children': ['249']},{'id': '249', 'type': 'assignment', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '251', 'type': 'list_comprehension', 'children': ['252', '253', '262']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '253', 'type': 'for_in_clause', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '255', 'type': 'attribute', 'children': ['256', '261']},{'id': '256', 'type': 'attribute', 'children': ['257', '260']},{'id': '257', 'type': 'subscript', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '259', 'type': 'integer', 'children': [], 'value': '0'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '262', 'type': 'if_clause', 'children': ['263']},{'id': '263', 'type': 'call', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '265', 'type': 'argument_list', 'children': ['266']},{'id': '266', 'type': 'list_comprehension', 'children': ['267', '274']},{'id': '267', 'type': 'comparison_operator', 'children': ['268', '269'], 'value': 'in'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '269', 'type': 'attribute', 'children': ['270', '273']},{'id': '270', 'type': 'attribute', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '274', 'type': 'for_in_clause', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '276', 'type': 'subscript', 'children': ['277', '278']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '278', 'type': 'slice', 'children': ['279', '280']},{'id': '279', 'type': 'integer', 'children': [], 'value': '1'},{'id': '280', 'type': 'colon', 'children': []},{'id': '281', 'type': 'expression_statement', 'children': ['282']},{'id': '282', 'type': 'assignment', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '284', 'type': 'list_comprehension', 'children': ['285', '299']},{'id': '285', 'type': 'attribute', 'children': ['286', '298']},{'id': '286', 'type': 'call', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '288', 'type': 'argument_list', 'children': ['289']},{'id': '289', 'type': 'list_comprehension', 'children': ['290', '295']},{'id': '290', 'type': 'subscript', 'children': ['291', '294']},{'id': '291', 'type': 'attribute', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'att'},{'id': '295', 'type': 'for_in_clause', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '299', 'type': 'for_in_clause', 'children': ['300', '301']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'att'},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '302', 'type': 'return_statement', 'children': ['303']},{'id': '303', 'type': 'call', 'children': ['304', '307']},{'id': '304', 'type': 'attribute', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'fromrecords'},{'id': '307', 'type': 'argument_list', 'children': ['308', '322', '327', '330']},{'id': '308', 'type': 'call', 'children': ['309', '312']},{'id': '309', 'type': 'attribute', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'listunion'},{'id': '312', 'type': 'argument_list', 'children': ['313']},{'id': '313', 'type': 'list_comprehension', 'children': ['314', '319']},{'id': '314', 'type': 'call', 'children': ['315', '318']},{'id': '315', 'type': 'attribute', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'ar'},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'tolist'},{'id': '318', 'type': 'argument_list', 'children': []},{'id': '319', 'type': 'for_in_clause', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'ar'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '322', 'type': 'keyword_argument', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '324', 'type': 'attribute', 'children': ['325', '326']},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '327', 'type': 'keyword_argument', 'children': ['328', '329']},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '330', 'type': 'keyword_argument', 'children': ['331', '332']},{'id': '331', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '333', 'type': 'else_clause', 'children': ['334']},{'id': '334', 'type': 'block', 'children': ['335']},{'id': '335', 'type': 'return_statement', 'children': ['336']},{'id': '336', 'type': 'subscript', 'children': ['337', '338']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '338', 'type': 'integer', 'children': [], 'value': '0'} | def rowstack(seq, mode='nulls', nullvals=None):
'''
Vertically stack a sequence of numpy ndarrays with structured dtype
Analog of numpy.vstack
Implemented by the tabarray method
:func:`tabular.tab.tabarray.rowstack` which uses
:func:`tabular.tabarray.tab_rowstack`.
**Parameters**
**seq** : sequence of numpy recarrays
List, tuple, etc. of numpy recarrays to stack vertically.
**mode** : string in ['nulls', 'commons', 'abort']
Denotes how to proceed if the recarrays have different
dtypes, e.g. different sets of named columns.
* if `mode` == ``nulls``, the resulting set of columns is
determined by the union of the dtypes of all recarrays
to be stacked, and missing data is filled with null
values as defined by
:func:`tabular.spreadsheet.nullvalue`; this is the
default mode.
* elif `mode` == ``commons``, the resulting set of
columns is determined by the intersection of the dtypes
of all recarrays to be stacked, e.g. common columns.
* elif `mode` == ``abort``, raise an error when the
recarrays to stack have different dtypes.
**Returns**
**out** : numpy ndarray with structured dtype
Result of vertically stacking the arrays in `seq`.
**See also:** `numpy.vstack
<http://docs.scipy.org/doc/numpy/reference/generated/numpy.vstack.html>`_.
'''
if nullvals == None:
nullvals = utils.DEFAULT_NULLVALUEFORMAT
if len(seq) > 1:
assert mode in ['commons','nulls','abort'], \
('"mode" argument must either by "commons", "abort", or "nulls".')
if mode == 'abort':
if not all([set(l.dtype.names) == set(seq[0].dtype.names)
for l in seq]):
raise ValueError('Some column names are different.')
else:
mode = 'commons'
if mode == 'nulls':
names = utils.uniqify(utils.listunion([list(s.dtype.names)
for s in seq if s.dtype.names != None]))
formats = [max([s.dtype[att] for s in seq if s.dtype.names != None
and att in s.dtype.names]).str for att in names]
dtype = np.dtype(zip(names,formats))
return utils.fromarrays([utils.listunion([s[att].tolist()
if (s.dtype.names != None and att in s.dtype.names)
else [nullvals(format)] * len(s) for s in seq])
for (att, format) in zip(names, formats)], type=np.ndarray,
dtype=dtype)
elif mode == 'commons':
names = [x for x in seq[0].dtype.names
if all([x in l.dtype.names for l in seq[1:]])]
formats = [max([a.dtype[att] for a in seq]).str for att in names]
return utils.fromrecords(utils.listunion(
[ar.tolist() for ar in seq]), type=np.ndarray,
names=names, formats=formats)
else:
return seq[0] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'colstack'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '7', 'type': 'string', 'children': [], 'value': "'abort'"},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'returnnaming'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'block', 'children': ['12', '21', '46', '76', '95', '223']},{'id': '12', 'type': 'assert_statement', 'children': ['13', '20']},{'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': 'in'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '15', 'type': 'list', 'children': ['16', '17', '18', '19'], 'value': "['first','drop','abort','rename']"},{'id': '16', 'type': 'string', 'children': [], 'value': "'first'"},{'id': '17', 'type': 'string', 'children': [], 'value': "'drop'"},{'id': '18', 'type': 'string', 'children': [], 'value': "'abort'"},{'id': '19', 'type': 'string', 'children': [], 'value': "'rename'"},{'id': '20', 'type': 'string', 'children': [], 'value': '\'mode argument must take on value "first","drop", "rename", or "abort".\''},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'AllNames'},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'uniqify'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'listunion'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'list_comprehension', 'children': ['35', '43']},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'attribute', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '43', 'type': 'for_in_clause', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'NameList'},{'id': '49', 'type': 'list_comprehension', 'children': ['50', '73']},{'id': '50', 'type': 'tuple', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '52', 'type': 'list_comprehension', 'children': ['53', '54', '63']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '54', 'type': 'for_in_clause', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '56', 'type': 'call', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '63', 'type': 'if_clause', 'children': ['64']},{'id': '64', 'type': 'comparison_operator', 'children': ['65', '66'], 'value': 'in'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '66', 'type': 'attribute', 'children': ['67', '72']},{'id': '67', 'type': 'attribute', 'children': ['68', '71']},{'id': '68', 'type': 'subscript', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '73', 'type': 'for_in_clause', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'AllNames'},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'Commons'},{'id': '79', 'type': 'list_comprehension', 'children': ['80', '83', '86']},{'id': '80', 'type': 'subscript', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '82', 'type': 'integer', 'children': [], 'value': '0'},{'id': '83', 'type': 'for_in_clause', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'NameList'},{'id': '86', 'type': 'if_clause', 'children': ['87']},{'id': '87', 'type': 'comparison_operator', 'children': ['88', '94'], 'value': '>'},{'id': '88', 'type': 'call', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'subscript', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '93', 'type': 'integer', 'children': [], 'value': '1'},{'id': '94', 'type': 'integer', 'children': [], 'value': '1'},{'id': '95', 'type': 'if_statement', 'children': ['96', '106', '206']},{'id': '96', 'type': 'boolean_operator', 'children': ['97', '103'], 'value': 'or'},{'id': '97', 'type': 'comparison_operator', 'children': ['98', '102'], 'value': '>'},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'Commons'},{'id': '102', 'type': 'integer', 'children': [], 'value': '0'},{'id': '103', 'type': 'comparison_operator', 'children': ['104', '105'], 'value': '=='},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '105', 'type': 'string', 'children': [], 'value': "'first'"},{'id': '106', 'type': 'block', 'children': ['107']},{'id': '107', 'type': 'if_statement', 'children': ['108', '111', '119', '143']},{'id': '108', 'type': 'comparison_operator', 'children': ['109', '110'], 'value': '=='},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '110', 'type': 'string', 'children': [], 'value': "'abort'"},{'id': '111', 'type': 'block', 'children': ['112']},{'id': '112', 'type': 'raise_statement', 'children': ['113']},{'id': '113', 'type': 'call', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '115', 'type': 'argument_list', 'children': ['116']},{'id': '116', 'type': 'binary_operator', 'children': ['117', '118'], 'value': '+'},{'id': '117', 'type': 'string', 'children': [], 'value': "'There are common column names with differing '"},{'id': '118', 'type': 'string', 'children': [], 'value': "'values in the columns'"},{'id': '119', 'type': 'elif_clause', 'children': ['120', '123']},{'id': '120', 'type': 'comparison_operator', 'children': ['121', '122'], 'value': '=='},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '122', 'type': 'string', 'children': [], 'value': "'drop'"},{'id': '123', 'type': 'block', 'children': ['124']},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'assignment', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '127', 'type': 'list_comprehension', 'children': ['128', '134', '139']},{'id': '128', 'type': 'tuple', 'children': ['129', '132', '133']},{'id': '129', 'type': 'subscript', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '131', 'type': 'integer', 'children': [], 'value': '0'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '134', 'type': 'for_in_clause', 'children': ['135', '138']},{'id': '135', 'type': 'tuple_pattern', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'NameList'},{'id': '139', 'type': 'if_clause', 'children': ['140']},{'id': '140', 'type': 'comparison_operator', 'children': ['141', '142'], 'value': 'not'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'Commons'},{'id': '143', 'type': 'elif_clause', 'children': ['144', '147']},{'id': '144', 'type': 'comparison_operator', 'children': ['145', '146'], 'value': '=='},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '146', 'type': 'string', 'children': [], 'value': "'rename'"},{'id': '147', 'type': 'block', 'children': ['148', '155']},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'assignment', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'NameDict'},{'id': '151', 'type': 'call', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'NameList'},{'id': '155', 'type': 'expression_statement', 'children': ['156']},{'id': '156', 'type': 'assignment', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '158', 'type': 'call', 'children': ['159', '162']},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'listunion'},{'id': '162', 'type': 'argument_list', 'children': ['163']},{'id': '163', 'type': 'list_comprehension', 'children': ['164', '197', '198']},{'id': '164', 'type': 'list_comprehension', 'children': ['165', '190']},{'id': '165', 'type': 'conditional_expression', 'children': ['166', '170', '178', '179'], 'value': 'if'},{'id': '166', 'type': 'tuple', 'children': ['167', '168', '169']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '170', 'type': 'comparison_operator', 'children': ['171', '177'], 'value': '=='},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'subscript', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'NameDict'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '177', 'type': 'integer', 'children': [], 'value': '1'},{'id': '178', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '179', 'type': 'tuple', 'children': ['180', '181', '182']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '182', 'type': 'binary_operator', 'children': ['183', '186'], 'value': '+'},{'id': '183', 'type': 'binary_operator', 'children': ['184', '185'], 'value': '+'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '185', 'type': 'string', 'children': [], 'value': "'_'"},{'id': '186', 'type': 'call', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '188', 'type': 'argument_list', 'children': ['189']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '190', 'type': 'for_in_clause', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '192', 'type': 'attribute', 'children': ['193', '196']},{'id': '193', 'type': 'attribute', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '197', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '198', 'type': 'for_in_clause', 'children': ['199', '202']},{'id': '199', 'type': 'tuple_pattern', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '202', 'type': 'call', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '204', 'type': 'argument_list', 'children': ['205']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '206', 'type': 'else_clause', 'children': ['207']},{'id': '207', 'type': 'block', 'children': ['208']},{'id': '208', 'type': 'expression_statement', 'children': ['209']},{'id': '209', 'type': 'assignment', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '211', 'type': 'list_comprehension', 'children': ['212', '218']},{'id': '212', 'type': 'tuple', 'children': ['213', '216', '217']},{'id': '213', 'type': 'subscript', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '215', 'type': 'integer', 'children': [], 'value': '0'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '218', 'type': 'for_in_clause', 'children': ['219', '222']},{'id': '219', 'type': 'tuple_pattern', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'NameList'},{'id': '223', 'type': 'if_statement', 'children': ['224', '225', '260']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'returnnaming'},{'id': '225', 'type': 'block', 'children': ['226']},{'id': '226', 'type': 'return_statement', 'children': ['227']},{'id': '227', 'type': 'expression_list', 'children': ['228', '259']},{'id': '228', 'type': 'call', 'children': ['229', '232']},{'id': '229', 'type': 'attribute', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'fromarrays'},{'id': '232', 'type': 'argument_list', 'children': ['233', '245', '250']},{'id': '233', 'type': 'list_comprehension', 'children': ['234', '239']},{'id': '234', 'type': 'subscript', 'children': ['235', '238']},{'id': '235', 'type': 'subscript', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '239', 'type': 'for_in_clause', 'children': ['240', '244']},{'id': '240', 'type': 'tuple_pattern', 'children': ['241', '242', '243']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '245', 'type': 'keyword_argument', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '247', 'type': 'attribute', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '250', 'type': 'keyword_argument', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '252', 'type': 'subscript', 'children': ['253', '258']},{'id': '253', 'type': 'call', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '255', 'type': 'argument_list', 'children': ['256']},{'id': '256', 'type': 'list_splat', 'children': ['257']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '258', 'type': 'integer', 'children': [], 'value': '2'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '260', 'type': 'else_clause', 'children': ['261']},{'id': '261', 'type': 'block', 'children': ['262']},{'id': '262', 'type': 'return_statement', 'children': ['263']},{'id': '263', 'type': 'call', 'children': ['264', '267']},{'id': '264', 'type': 'attribute', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'fromarrays'},{'id': '267', 'type': 'argument_list', 'children': ['268', '280', '285']},{'id': '268', 'type': 'list_comprehension', 'children': ['269', '274']},{'id': '269', 'type': 'subscript', 'children': ['270', '273']},{'id': '270', 'type': 'subscript', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '274', 'type': 'for_in_clause', 'children': ['275', '279']},{'id': '275', 'type': 'tuple_pattern', 'children': ['276', '277', '278']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '280', 'type': 'keyword_argument', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '282', 'type': 'attribute', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '285', 'type': 'keyword_argument', 'children': ['286', '287']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '287', 'type': 'subscript', 'children': ['288', '293']},{'id': '288', 'type': 'call', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '290', 'type': 'argument_list', 'children': ['291']},{'id': '291', 'type': 'list_splat', 'children': ['292']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '293', 'type': 'integer', 'children': [], 'value': '2'} | def colstack(seq, mode='abort',returnnaming=False):
assert mode in ['first','drop','abort','rename'], \
'mode argument must take on value "first","drop", "rename", or "abort".'
AllNames = utils.uniqify(utils.listunion(
[list(l.dtype.names) for l in seq]))
NameList = [(x, [i for i in range(len(seq)) if x in seq[i].dtype.names])
for x in AllNames]
Commons = [x[0] for x in NameList if len(x[1]) > 1]
if len(Commons) > 0 or mode == 'first':
if mode == 'abort':
raise ValueError('There are common column names with differing ' +
'values in the columns')
elif mode == 'drop':
Names = [(L[0], x,x) for (x, L) in NameList if x not in Commons]
elif mode == 'rename':
NameDict = dict(NameList)
Names = utils.listunion([[(i,n,n) if len(NameDict[n]) == 1 else \
(i,n,n + '_' + str(i)) for n in s.dtype.names] \
for (i,s) in enumerate(seq)])
else:
Names = [(L[0], x,x) for (x, L) in NameList]
if returnnaming:
return utils.fromarrays([seq[i][x] for (i, x,y) in Names],
type= np.ndarray,names=zip(*Names)[2]),Names
else:
return utils.fromarrays([seq[i][x] for (i, x,y) in Names],
type= np.ndarray,names=zip(*Names)[2]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'getjp2image'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'sourceId'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'observatory'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'instrument'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'detector'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'measurement'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'block', 'children': ['21', '23', '27', '31', '66', '97', '125', '153', '181', '209', '215']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'string', 'children': [], 'value': "'''\n Helioviewer.org and JHelioviewer operate off of JPEG2000 formatted image data generated from science-quality FITS files. Use the APIs below to interact directly with these intermediary JPEG2000 files.\n Download a JP2 image for the specified datasource that is the closest match in time to the `date` requested.\n Either `sourceId` must be specified, or the combination of `observatory`, `instrument`, `detector`, and `measurement`.\n Request Parameters:\n Parameter\tRequired\tType\tExample\tDescription\n date\tRequired\tstring\t2014-01-01T23:59:59Z\tDesired date/time of the JP2 image. ISO 8601 combined UTC date and time UTC format.\n sourceId\tOptional\tnumber\t14\tUnique image datasource identifier.\n observatory\tOptional\tstring\tSDO\tObservatory name.\n instrument\tOptional\tstring\tAIA\tInstrument name.\n detector\tOptional\tstring\tAIA\tDetector name.\n measurement\tOptional\tstring\t335\tMeasurement name.\n jpip\tOptional\tboolean\tfalse\tOptionally return a JPIP URI instead of the binary data of the image itself.\n json\tOptional\tboolean\tfalse\tOptionally return a JSON object.\n EXAMPLE: http://helioviewer.org/api/v1/getJP2Image/?date=2014-01-01T23:59:59Z&sourceId=14&jpip=true\n '''"},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'base_url'},{'id': '26', 'type': 'string', 'children': [], 'value': "'http://helioviewer.org/api/v1/getJP2Image/?'"},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'req_url'},{'id': '30', 'type': 'string', 'children': [], 'value': "''"},{'id': '31', 'type': 'try_statement', 'children': ['32', '59']},{'id': '32', 'type': 'block', 'children': ['33', '38', '53']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'validate_iso8601'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '38', 'type': 'if_statement', 'children': ['39', '48']},{'id': '39', 'type': 'not_operator', 'children': ['40']},{'id': '40', 'type': 'comparison_operator', 'children': ['41', '47'], 'value': '=='},{'id': '41', 'type': 'subscript', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '43', 'type': 'slice', 'children': ['44', '46']},{'id': '44', 'type': 'unary_operator', 'children': ['45'], 'value': '-'},{'id': '45', 'type': 'integer', 'children': [], 'value': '1'},{'id': '46', 'type': 'colon', 'children': []},{'id': '47', 'type': 'string', 'children': [], 'value': "'Z'"},{'id': '48', 'type': 'block', 'children': ['49']},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'augmented_assignment', 'children': ['51', '52'], 'value': '+='},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '52', 'type': 'string', 'children': [], 'value': "'Z'"},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'augmented_assignment', 'children': ['55', '56'], 'value': '+='},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'base_url'},{'id': '56', 'type': 'binary_operator', 'children': ['57', '58'], 'value': '+'},{'id': '57', 'type': 'string', 'children': [], 'value': "'date='"},{'id': '58', 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['118']},{'id': '118', 'type': 'augmented_assignment', 'children': ['119', '120'], 'value': '+='},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'base_url'},{'id': '120', 'type': 'binary_operator', 'children': ['121', '124'], 'value': '+'},{'id': '121', 'type': 'binary_operator', 'children': ['122', '123'], 'value': '+'},{'id': '122', 'type': 'string', 'children': [], 'value': '"observatory="'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'observatory'},{'id': '124', 'type': 'string', 'children': [], 'value': '"&"'},{'id': '125', 'type': 'if_statement', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'instrument'},{'id': '127', 'type': 'block', 'children': ['128']},{'id': '128', 'type': 'if_statement', 'children': ['129', '135', '143']},{'id': '129', 'type': 'not_operator', 'children': ['130']},{'id': '130', 'type': 'call', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 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[], 'value': 'base_url'},{'id': '204', 'type': 'binary_operator', 'children': ['205', '208'], 'value': '+'},{'id': '205', 'type': 'binary_operator', 'children': ['206', '207'], 'value': '+'},{'id': '206', 'type': 'string', 'children': [], 'value': '"measurement="'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'detector'},{'id': '208', 'type': 'string', 'children': [], 'value': '"&"'},{'id': '209', 'type': 'expression_statement', 'children': ['210']},{'id': '210', 'type': 'augmented_assignment', 'children': ['211', '212'], 'value': '+='},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'req_url'},{'id': '212', 'type': 'binary_operator', 'children': ['213', '214'], 'value': '+'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'base_url'},{'id': '214', 'type': 'string', 'children': [], 'value': '"jpip=true"'},{'id': '215', 'type': 'return_statement', 'children': ['216']},{'id': '216', 'type': 'call', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'dispatch_http_get'},{'id': '218', 'type': 'argument_list', 'children': ['219']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'req_url'} | def getjp2image(date,
sourceId=None,
observatory=None,
instrument=None,
detector=None,
measurement=None):
'''
Helioviewer.org and JHelioviewer operate off of JPEG2000 formatted image data generated from science-quality FITS files. Use the APIs below to interact directly with these intermediary JPEG2000 files.
Download a JP2 image for the specified datasource that is the closest match in time to the `date` requested.
Either `sourceId` must be specified, or the combination of `observatory`, `instrument`, `detector`, and `measurement`.
Request Parameters:
Parameter Required Type Example Description
date Required string 2014-01-01T23:59:59Z Desired date/time of the JP2 image. ISO 8601 combined UTC date and time UTC format.
sourceId Optional number 14 Unique image datasource identifier.
observatory Optional string SDO Observatory name.
instrument Optional string AIA Instrument name.
detector Optional string AIA Detector name.
measurement Optional string 335 Measurement name.
jpip Optional boolean false Optionally return a JPIP URI instead of the binary data of the image itself.
json Optional boolean false Optionally return a JSON object.
EXAMPLE: http://helioviewer.org/api/v1/getJP2Image/?date=2014-01-01T23:59:59Z&sourceId=14&jpip=true
'''
base_url = 'http://helioviewer.org/api/v1/getJP2Image/?'
req_url = ''
try:
validate_iso8601(date)
if not date[-1:] == 'Z':
date += 'Z'
base_url += 'date=' + date
except:
raise ValueError(
"Your date input is not in iso8601 format. ex: 2014-01-01T23:59:59")
if sourceId:
if not isinstance(sourceId, int):
logger.error("The sourceId argument should be an int, ignoring it")
else:
base_url += "sourceId=" + str(sourceId) + "&"
if observatory:
if not isinstance(observatory, str):
logger.error(
"The observatory argument should be a str, ignoring it")
else:
base_url += "observatory=" + observatory + "&"
if instrument:
if not isinstance(instrument, str):
logger.error(
"The instrument argument should be a str, ignoring it")
else:
base_url += "instrument=" + instrument + "&"
if detector:
if not isinstance(detector, str):
logger.error("The detector argument should be a str, ignoring it")
else:
base_url += "detector=" + detector + "&"
if measurement:
if not isinstance(measurement, str):
logger.error(
"The measurement argument should be a str, ignoring it")
else:
base_url += "measurement=" + detector + "&"
req_url += base_url + "jpip=true"
return dispatch_http_get(req_url) |
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'identifier', 'children': [], 'value': 'load_module'},{'id': '32', 'type': 'identifier', 'children': [], 'value': '_CONTEXT'},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'possible_type'},{'id': '36', 'type': 'conditional_expression', 'children': ['37', '42', '47'], 'value': 'if'},{'id': '37', 'type': 'subscript', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'pairs'},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'cntxt'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'TYPE'},{'id': '42', 'type': 'comparison_operator', 'children': ['43', '46'], 'value': 'in'},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'cntxt'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'TYPE'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'pairs'},{'id': '47', 'type': 'None', 'children': []},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'target_class'},{'id': '51', 'type': 'conditional_expression', 'children': ['52', '58', '63'], 'value': 'if'},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '54', 'type': 'argument_list', 'children': ['55', '56', '57']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'load_module'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'possible_type'},{'id': '57', 'type': 'None', 'children': []},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '60', 'type': 'argument_list', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'possible_type'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '63', 'type': 'None', 'children': []},{'id': '64', 'type': 'if_statement', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'target_class'},{'id': '66', 'type': 'block', 'children': ['67']},{'id': '67', 'type': 'return_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'target_class'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'dictionary_splat', 'children': ['72']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'pairs'},{'id': '73', 'type': 'for_statement', 'children': ['74', '75', '78']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'type_exception'},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'cntxt'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'TYPE_EXCEPTIONS'},{'id': '78', 'type': 'block', 'children': ['79', '97', '105', '111', '117', '135']},{'id': '79', 'type': 'if_statement', 'children': ['80', '86']},{'id': '80', 'type': 'not_operator', 'children': ['81']},{'id': '81', 'type': 'call', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '83', 'type': 'argument_list', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'load_module'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'type_exception'},{'id': '86', 'type': 'block', 'children': ['87']},{'id': '87', 'type': 'raise_statement', 'children': ['88']},{'id': '88', 'type': 'call', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'UNKNOWN_TYPE_EXCEPTION'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'type_exception'},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'target_class'},{'id': '100', 'type': 'call', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '102', 'type': 'argument_list', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'load_module'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'type_exception'},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'assignment', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'target_strict'},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'target_class'},{'id': '110', 'type': 'identifier', 'children': [], 'value': '_strict'},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'assignment', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'target_class'},{'id': '115', 'type': 'identifier', 'children': [], 'value': '_strict'},{'id': '116', 'type': 'False', 'children': []},{'id': '117', 'type': 'try_statement', 'children': ['118', '127']},{'id': '118', 'type': 'block', 'children': ['119']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'rval'},{'id': '122', 'type': 'call', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'target_class'},{'id': '124', 'type': 'argument_list', 'children': ['125']},{'id': '125', 'type': 'dictionary_splat', 'children': ['126']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'pairs'},{'id': '127', 'type': 'finally_clause', 'children': ['128']},{'id': '128', 'type': 'block', 'children': ['129']},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '134']},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'target_class'},{'id': '133', 'type': 'identifier', 'children': [], 'value': '_strict'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'target_strict'},{'id': '135', 'type': 'if_statement', 'children': ['136', '140']},{'id': '136', 'type': 'call', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'is_valid'},{'id': '138', 'type': 'argument_list', 'children': ['139']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'rval'},{'id': '140', 'type': 'block', 'children': ['141']},{'id': '141', 'type': 'return_statement', 'children': ['142']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'rval'},{'id': '143', 'type': 'if_statement', 'children': ['144', '152']},{'id': '144', 'type': 'boolean_operator', 'children': ['145', '149'], 'value': 'and'},{'id': '145', 'type': 'not_operator', 'children': ['146']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'cntxt'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'TYPE'},{'id': '149', 'type': 'attribute', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'cntxt'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'TYPE_EXCEPTIONS'},{'id': '152', 'type': 'block', 'children': ['153']},{'id': '153', 'type': 'return_statement', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '164']},{'id': '155', 'type': 'call', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '157', 'type': 'argument_list', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'load_module'},{'id': '159', 'type': 'subscript', 'children': ['160', '163']},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'cntxt'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'TYPE_EXCEPTIONS'},{'id': '163', 'type': 'integer', 'children': [], 'value': '0'},{'id': '164', 'type': 'argument_list', 'children': ['165']},{'id': '165', 'type': 'dictionary_splat', 'children': ['166']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'pairs'},{'id': '167', 'type': 'if_statement', 'children': ['168', '173', '179']},{'id': '168', 'type': 'comparison_operator', 'children': ['169', '172'], 'value': 'in'},{'id': '169', 'type': 'attribute', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'cntxt'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'TYPE'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'pairs'},{'id': '173', 'type': 'block', 'children': ['174']},{'id': '174', 'type': 'raise_statement', 'children': ['175']},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '177', 'type': 'argument_list', 'children': ['178']},{'id': '178', 'type': 'string', 'children': [], 'value': 'f\'Unknown reference type: "{cntxt.TYPE}": "{pairs[cntxt.TYPE]}"\''},{'id': '179', 'type': 'else_clause', 'children': ['180']},{'id': '180', 'type': 'block', 'children': ['181']},{'id': '181', 'type': 'raise_statement', 'children': ['182']},{'id': '182', 'type': 'call', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'string', 'children': [], 'value': 'f\'Missing "{cntxt.TYPE}" element\''} | def loads_loader(load_module: types.ModuleType, pairs: Dict[str, str]) -> Optional[JSGValidateable]:
cntxt = load_module._CONTEXT
possible_type = pairs[cntxt.TYPE] if cntxt.TYPE in pairs else None
target_class = getattr(load_module, possible_type, None) if isinstance(possible_type, str) else None
if target_class:
return target_class(**pairs)
for type_exception in cntxt.TYPE_EXCEPTIONS:
if not hasattr(load_module, type_exception):
raise ValueError(UNKNOWN_TYPE_EXCEPTION.format(type_exception))
target_class = getattr(load_module, type_exception)
target_strict = target_class._strict
target_class._strict = False
try:
rval = target_class(**pairs)
finally:
target_class._strict = target_strict
if is_valid(rval):
return rval
if not cntxt.TYPE and cntxt.TYPE_EXCEPTIONS:
return getattr(load_module, cntxt.TYPE_EXCEPTIONS[0])(**pairs)
if cntxt.TYPE in pairs:
raise ValueError(f'Unknown reference type: "{cntxt.TYPE}": "{pairs[cntxt.TYPE]}"')
else:
raise ValueError(f'Missing "{cntxt.TYPE}" element') |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_cred_def'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'typed_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '7', 'type': 'type', 'children': ['8']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '9', 'type': 'type', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '11', 'type': 'block', 'children': ['12', '20', '29', '191', '199']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '17', 'type': 'argument_list', 'children': ['18', '19']},{'id': '18', 'type': 'string', 'children': [], 'value': "'_BaseAgent.get_cred_def >>> cd_id: %s'"},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'rv_json'},{'id': '23', 'type': 'call', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'dictionary', 'children': []},{'id': '29', 'type': 'with_statement', 'children': ['30', '35']},{'id': '30', 'type': 'with_clause', 'children': ['31']},{'id': '31', 'type': 'with_item', 'children': ['32']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'CRED_DEF_CACHE'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'lock'},{'id': '35', 'type': 'block', 'children': ['36', '70', '83', '93', '102', '137', '172', '183']},{'id': '36', 'type': 'if_statement', 'children': ['37', '40']},{'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': 'in'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'CRED_DEF_CACHE'},{'id': '40', 'type': 'block', 'children': ['41', '49', '60', '68']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '46', 'type': 'argument_list', 'children': ['47', '48']},{'id': '47', 'type': 'string', 'children': [], 'value': "'_BaseAgent.get_cred_def: got cred def for %s from cache'"},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'rv_json'},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'subscript', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'CRED_DEF_CACHE'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '65', 'type': 'argument_list', 'children': ['66', '67']},{'id': '66', 'type': 'string', 'children': [], 'value': "'_BaseAgent.get_cred_def <<< %s'"},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'rv_json'},{'id': '68', 'type': 'return_statement', 'children': ['69']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'rv_json'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'req_json'},{'id': '73', 'type': 'await', 'children': ['74']},{'id': '74', 'type': 'call', 'children': ['75', '78']},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'ledger'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'build_get_cred_def_request'},{'id': '78', 'type': 'argument_list', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'did'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'assignment', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'resp_json'},{'id': '86', 'type': 'await', 'children': ['87']},{'id': '87', 'type': 'call', 'children': ['88', '91']},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '90', 'type': 'identifier', 'children': [], 'value': '_submit'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'req_json'},{'id': '93', 'type': 'expression_statement', 'children': ['94']},{'id': '94', 'type': 'assignment', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '96', 'type': 'call', 'children': ['97', '100']},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'loads'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'resp_json'},{'id': '102', 'type': 'if_statement', 'children': ['103', '118']},{'id': '103', 'type': 'not_operator', 'children': ['104']},{'id': '104', 'type': '()', 'children': ['105']},{'id': '105', 'type': 'boolean_operator', 'children': ['106', '109'], 'value': 'and'},{'id': '106', 'type': 'comparison_operator', 'children': ['107', '108'], 'value': 'in'},{'id': '107', 'type': 'string', 'children': [], 'value': "'result'"},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '109', 'type': 'call', 'children': ['110', '115']},{'id': '110', 'type': 'attribute', 'children': ['111', '114']},{'id': '111', 'type': 'subscript', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '113', 'type': 'string', 'children': [], 'value': "'result'"},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '115', 'type': 'argument_list', 'children': ['116', '117']},{'id': '116', 'type': 'string', 'children': [], 'value': "'data'"},{'id': '117', 'type': 'None', 'children': []},{'id': '118', 'type': 'block', 'children': ['119', '127']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'call', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '124', 'type': 'argument_list', 'children': ['125', '126']},{'id': '125', 'type': 'string', 'children': [], 'value': "'_BaseAgent.get_cred_def: <!< no cred def exists on %s'"},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '127', 'type': 'raise_statement', 'children': ['128']},{'id': '128', 'type': 'call', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'AbsentCredDef'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'string', 'children': [], 'value': "'No cred def exists on {}'"},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '137', 'type': 'try_statement', 'children': ['138', '151']},{'id': '138', 'type': 'block', 'children': ['139']},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'assignment', 'children': ['141', '144']},{'id': '141', 'type': 'tuple_pattern', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'rv_json'},{'id': '144', 'type': 'await', 'children': ['145']},{'id': '145', 'type': 'call', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'ledger'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'parse_get_cred_def_response'},{'id': '149', 'type': 'argument_list', 'children': ['150']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'resp_json'},{'id': '151', 'type': 'except_clause', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'IndyError'},{'id': '153', 'type': 'block', 'children': ['154', '162']},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'call', 'children': ['156', '159']},{'id': '156', 'type': 'attribute', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '159', 'type': 'argument_list', 'children': ['160', '161']},{'id': '160', 'type': 'string', 'children': [], 'value': "'_BaseAgent.get_cred_def: <!< no cred def exists on %s'"},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '162', 'type': 'raise_statement', 'children': ['163']},{'id': '163', 'type': 'call', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'AbsentCredDef'},{'id': '165', 'type': 'argument_list', 'children': ['166']},{'id': '166', 'type': 'call', 'children': ['167', '170']},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'string', 'children': [], 'value': "'No cred def exists on {}'"},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '170', 'type': 'argument_list', 'children': ['171']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '172', 'type': 'expression_statement', 'children': ['173']},{'id': '173', 'type': 'assignment', 'children': ['174', '177']},{'id': '174', 'type': 'subscript', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'CRED_DEF_CACHE'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '177', 'type': 'call', 'children': ['178', '181']},{'id': '178', 'type': 'attribute', 'children': ['179', '180']},{'id': 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'attribute', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '196', 'type': 'argument_list', 'children': ['197', '198']},{'id': '197', 'type': 'string', 'children': [], 'value': "'_BaseAgent.get_cred_def <<< %s'"},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'rv_json'},{'id': '199', 'type': 'return_statement', 'children': ['200']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'rv_json'} | async def get_cred_def(self, cd_id: str) -> str:
LOGGER.debug('_BaseAgent.get_cred_def >>> cd_id: %s', cd_id)
rv_json = json.dumps({})
with CRED_DEF_CACHE.lock:
if cd_id in CRED_DEF_CACHE:
LOGGER.info('_BaseAgent.get_cred_def: got cred def for %s from cache', cd_id)
rv_json = json.dumps(CRED_DEF_CACHE[cd_id])
LOGGER.debug('_BaseAgent.get_cred_def <<< %s', rv_json)
return rv_json
req_json = await ledger.build_get_cred_def_request(self.did, cd_id)
resp_json = await self._submit(req_json)
resp = json.loads(resp_json)
if not ('result' in resp and resp['result'].get('data', None)):
LOGGER.debug('_BaseAgent.get_cred_def: <!< no cred def exists on %s', cd_id)
raise AbsentCredDef('No cred def exists on {}'.format(cd_id))
try:
(_, rv_json) = await ledger.parse_get_cred_def_response(resp_json)
except IndyError:
LOGGER.debug('_BaseAgent.get_cred_def: <!< no cred def exists on %s', cd_id)
raise AbsentCredDef('No cred def exists on {}'.format(cd_id))
CRED_DEF_CACHE[cd_id] = json.loads(rv_json)
LOGGER.info('_BaseAgent.get_cred_def: got cred def %s from ledger', cd_id)
LOGGER.debug('_BaseAgent.get_cred_def <<< %s', rv_json)
return rv_json |
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'value': "'Conversion from {i} to {o}'"},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '202', 'type': 'argument_list', 'children': ['203', '206']},{'id': '203', 'type': 'keyword_argument', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'current_format'},{'id': '206', 'type': 'keyword_argument', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'out_nexson_format'},{'id': '209', 'type': 'expression_statement', 'children': ['210']},{'id': '210', 'type': 'assignment', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'blob'},{'id': '212', 'type': 'call', 'children': ['213', '216']},{'id': '213', 'type': 'attribute', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 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out_nexson_format,
current_format=None,
remove_old_structs=True,
pristine_if_invalid=False,
sort_arbitrary=False):
if not current_format:
current_format = detect_nexson_version(blob)
out_nexson_format = resolve_nexson_format(out_nexson_format)
if current_format == out_nexson_format:
if sort_arbitrary:
sort_arbitrarily_ordered_nexson(blob)
return blob
two2zero = _is_by_id_hbf(out_nexson_format) and _is_badgerfish_version(current_format)
zero2two = _is_by_id_hbf(current_format) and _is_badgerfish_version(out_nexson_format)
if two2zero or zero2two:
blob = convert_nexson_format(blob,
DIRECT_HONEY_BADGERFISH,
current_format=current_format,
remove_old_structs=remove_old_structs,
pristine_if_invalid=pristine_if_invalid)
current_format = DIRECT_HONEY_BADGERFISH
ccdict = {'output_format': out_nexson_format,
'input_format': current_format,
'remove_old_structs': remove_old_structs,
'pristine_if_invalid': pristine_if_invalid}
ccfg = ConversionConfig(ccdict)
if _is_badgerfish_version(current_format):
converter = Badgerfish2DirectNexson(ccfg)
elif _is_badgerfish_version(out_nexson_format):
assert _is_direct_hbf(current_format)
converter = Direct2BadgerfishNexson(ccfg)
elif _is_direct_hbf(current_format) and (out_nexson_format == BY_ID_HONEY_BADGERFISH):
converter = Direct2OptimalNexson(ccfg)
elif _is_direct_hbf(out_nexson_format) and (current_format == BY_ID_HONEY_BADGERFISH):
converter = Optimal2DirectNexson(ccfg)
else:
raise NotImplementedError('Conversion from {i} to {o}'.format(i=current_format, o=out_nexson_format))
blob = converter.convert(blob)
if sort_arbitrary:
sort_arbitrarily_ordered_nexson(blob)
return blob |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_inplace_sort_by_id'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'unsorted_list'},{'id': '5', 'type': 'block', 'children': ['6', '15', '30', '36', '41']},{'id': '6', 'type': 'if_statement', 'children': ['7', '13']},{'id': '7', 'type': 'not_operator', 'children': ['8']},{'id': '8', 'type': 'call', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '10', 'type': 'argument_list', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'unsorted_list'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '13', 'type': 'block', 'children': ['14']},{'id': '14', 'type': 'return_statement', 'children': []},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '18', 'type': 'list_comprehension', 'children': ['19', '27']},{'id': '19', 'type': 'tuple', 'children': ['20', '26']},{'id': '20', 'type': 'call', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '24', 'type': 'argument_list', 'children': ['25']},{'id': '25', 'type': 'string', 'children': [], 'value': "'@id'"},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '27', 'type': 'for_in_clause', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'unsorted_list'},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '35', 'type': 'argument_list', 'children': []},{'id': '36', 'type': 'delete_statement', 'children': ['37']},{'id': '37', 'type': 'subscript', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'unsorted_list'},{'id': '39', 'type': 'slice', 'children': ['40']},{'id': '40', 'type': 'colon', 'children': []},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'unsorted_list'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'list_comprehension', 'children': ['48', '51']},{'id': '48', 'type': 'subscript', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '50', 'type': 'integer', 'children': [], 'value': '1'},{'id': '51', 'type': 'for_in_clause', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'sorted_list'} | def _inplace_sort_by_id(unsorted_list):
if not isinstance(unsorted_list, list):
return
sorted_list = [(i.get('@id'), i) for i in unsorted_list]
sorted_list.sort()
del unsorted_list[:]
unsorted_list.extend([i[1] for i in sorted_list]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'cull_nonmatching_trees'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'nexson'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'tree_id'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'curr_version'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'block', 'children': ['10', '22', '37', '44', '50', '54', '117', '134']},{'id': '10', 'type': 'if_statement', 'children': ['11', '14']},{'id': '11', 'type': 'comparison_operator', 'children': ['12', '13'], 'value': 'is'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'curr_version'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'curr_version'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'detect_nexson_version'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'nexson'},{'id': '22', 'type': 'if_statement', 'children': ['23', '28']},{'id': '23', 'type': 'not_operator', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': '_is_by_id_hbf'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'curr_version'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'nexson'},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'convert_nexson_format'},{'id': '34', 'type': 'argument_list', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'nexson'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'BY_ID_HONEY_BADGERFISH'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'nexml_el'},{'id': '40', 'type': 'call', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'get_nexml_el'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'nexson'},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'tree_groups'},{'id': '47', 'type': 'subscript', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'nexml_el'},{'id': '49', 'type': 'string', 'children': [], 'value': "'treesById'"},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'tree_groups_to_del'},{'id': '53', 'type': 'list', 'children': [], 'value': '[]'},{'id': '54', 'type': 'for_statement', 'children': ['55', '58', '63']},{'id': '55', 'type': 'pattern_list', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'tgi'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'tree_group'},{'id': '58', 'type': 'call', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'tree_groups'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '62', 'type': 'argument_list', 'children': []},{'id': '63', 'type': 'block', 'children': ['64', '70']},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'tbi'},{'id': '67', 'type': 'subscript', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'tree_group'},{'id': '69', 'type': 'string', 'children': [], 'value': "'treeById'"},{'id': '70', 'type': 'if_statement', 'children': ['71', '74', '108']},{'id': '71', 'type': 'comparison_operator', 'children': ['72', '73'], 'value': 'in'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'tree_id'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'tbi'},{'id': '74', 'type': 'block', 'children': ['75', '91']},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'trees_to_del'},{'id': '78', 'type': 'list_comprehension', 'children': ['79', '80', '87']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '80', 'type': 'for_in_clause', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'tbi'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '86', 'type': 'argument_list', 'children': []},{'id': '87', 'type': 'if_clause', 'children': ['88']},{'id': '88', 'type': 'comparison_operator', 'children': ['89', '90'], 'value': '!='},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'tree_id'},{'id': '91', 'type': 'for_statement', 'children': ['92', '93', '94']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'tid'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'trees_to_del'},{'id': '94', 'type': 'block', 'children': ['95', '104']},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'call', 'children': ['97', '102']},{'id': '97', 'type': 'attribute', 'children': ['98', '101']},{'id': '98', 'type': 'subscript', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'tree_group'},{'id': '100', 'type': 'string', 'children': [], 'value': "'^ot:treeElementOrder'"},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '102', 'type': 'argument_list', 'children': ['103']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'tid'},{'id': '104', 'type': 'delete_statement', 'children': ['105']},{'id': '105', 'type': 'subscript', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'tbi'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'tid'},{'id': '108', 'type': 'else_clause', 'children': ['109']},{'id': '109', 'type': 'block', 'children': ['110']},{'id': '110', 'type': 'expression_statement', 'children': ['111']},{'id': '111', 'type': 'call', 'children': ['112', '115']},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'tree_groups_to_del'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '115', 'type': 'argument_list', 'children': ['116']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'tgi'},{'id': '117', 'type': 'for_statement', 'children': ['118', '119', '120']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'tgid'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'tree_groups_to_del'},{'id': '120', 'type': 'block', 'children': ['121', '130']},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'call', 'children': ['123', '128']},{'id': '123', 'type': 'attribute', 'children': ['124', '127']},{'id': '124', 'type': 'subscript', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'nexml_el'},{'id': '126', 'type': 'string', 'children': [], 'value': "'^ot:treesElementOrder'"},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'remove'},{'id': '128', 'type': 'argument_list', 'children': ['129']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'tgid'},{'id': '130', 'type': 'delete_statement', 'children': ['131']},{'id': '131', 'type': 'subscript', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'tree_groups'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'tgid'},{'id': '134', 'type': 'return_statement', 'children': ['135']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'nexson'} | def cull_nonmatching_trees(nexson, tree_id, curr_version=None):
if curr_version is None:
curr_version = detect_nexson_version(nexson)
if not _is_by_id_hbf(curr_version):
nexson = convert_nexson_format(nexson, BY_ID_HONEY_BADGERFISH)
nexml_el = get_nexml_el(nexson)
tree_groups = nexml_el['treesById']
tree_groups_to_del = []
for tgi, tree_group in tree_groups.items():
tbi = tree_group['treeById']
if tree_id in tbi:
trees_to_del = [i for i in tbi.keys() if i != tree_id]
for tid in trees_to_del:
tree_group['^ot:treeElementOrder'].remove(tid)
del tbi[tid]
else:
tree_groups_to_del.append(tgi)
for tgid in tree_groups_to_del:
nexml_el['^ot:treesElementOrder'].remove(tgid)
del tree_groups[tgid]
return nexson |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18', '30']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_validate'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'typed_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '7', 'type': 'type', 'children': ['8']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '9', 'type': 'typed_default_parameter', 'children': ['10', '11', '17']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '11', 'type': 'type', 'children': ['12']},{'id': '12', 'type': 'generic_type', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'Optional'},{'id': '14', 'type': 'type_parameter', 'children': ['15']},{'id': '15', 'type': 'type', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'Logger'},{'id': '17', 'type': 'None', 'children': []},{'id': '18', 'type': 'type', 'children': ['19']},{'id': '19', 'type': 'generic_type', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'Tuple'},{'id': '21', 'type': 'type_parameter', 'children': ['22', '24']},{'id': '22', 'type': 'type', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '24', 'type': 'type', 'children': ['25']},{'id': '25', 'type': 'generic_type', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '27', 'type': 'type_parameter', 'children': ['28']},{'id': '28', 'type': 'type', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '30', 'type': 'block', 'children': ['31', '35', '133', '147']},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '34', 'type': 'list', 'children': [], 'value': '[]'},{'id': '35', 'type': 'if_statement', 'children': ['36', '42', '50']},{'id': '36', 'type': 'not_operator', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '39', 'type': 'argument_list', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '42', 'type': 'block', 'children': ['43']},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'string', 'children': [], 'value': 'f"{self._variable_name}: {repr(val)} is not an array"'},{'id': '50', 'type': 'else_clause', 'children': ['51']},{'id': '51', 'type': 'block', 'children': ['52', '91', '110']},{'id': '52', 'type': 'for_statement', 'children': ['53', '54', '62']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '56', 'type': 'argument_list', 'children': ['57', '58']},{'id': '57', 'type': 'integer', 'children': [], 'value': '0'},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '62', 'type': 'block', 'children': ['63', '69']},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '66', 'type': 'subscript', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '69', 'type': 'if_statement', 'children': ['70', '83']},{'id': '70', 'type': 'not_operator', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'conforms'},{'id': '73', 'type': 'argument_list', 'children': ['74', '75', '78']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '77', 'type': 'identifier', 'children': [], 'value': '_type'},{'id': '78', 'type': 'attribute', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '81', 'type': 'identifier', 'children': [], 'value': '_context'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'NAMESPACE'},{'id': '83', 'type': 'block', 'children': ['84']},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'string', 'children': [], 'value': 'f"{self._variable_name} element {i}: {v} is not a {self._type.__name__}"'},{'id': '91', 'type': 'if_statement', 'children': ['92', '100']},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '97'], 'value': '<'},{'id': '93', 'type': 'call', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '99', 'type': 'identifier', 'children': [], 'value': '_min'},{'id': '100', 'type': 'block', 'children': ['101']},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '106', 'type': 'argument_list', 'children': ['107']},{'id': '107', 'type': 'concatenated_string', 'children': ['108', '109']},{'id': '108', 'type': 'string', 'children': [], 'value': 'f"{self._variable_name}: at least {self._min} value{\'s\' if self._min > 1 else \'\'} required - "'},{'id': '109', 'type': 'string', 'children': [], 'value': 'f"element has {len(val) if len(val) else \'none\'}"'},{'id': '110', 'type': 'if_statement', 'children': ['111', '125']},{'id': '111', 'type': 'boolean_operator', 'children': ['112', '117'], 'value': 'and'},{'id': '112', 'type': 'comparison_operator', 'children': ['113', '116'], 'value': 'is'},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '115', 'type': 'identifier', 'children': [], 'value': '_max'},{'id': '116', 'type': 'None', 'children': []},{'id': '117', 'type': 'comparison_operator', 'children': ['118', '122'], 'value': '>'},{'id': '118', 'type': 'call', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '120', 'type': 'argument_list', 'children': ['121']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '124', 'type': 'identifier', 'children': [], 'value': '_max'},{'id': '125', 'type': 'block', 'children': ['126']},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'call', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '131', 'type': 'argument_list', 'children': ['132']},{'id': '132', 'type': 'string', 'children': [], 'value': 'f"{self._variable_name}: no more than {self._max} values permitted - element has {len(val)}"'},{'id': '133', 'type': 'if_statement', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '135', 'type': 'block', 'children': ['136']},{'id': '136', 'type': 'for_statement', 'children': ['137', '138', '139']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '139', 'type': 'block', 'children': ['140']},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'call', 'children': ['142', '145']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '145', 'type': 'argument_list', 'children': ['146']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '147', 'type': 'return_statement', 'children': ['148']},{'id': '148', 'type': 'expression_list', 'children': ['149', '154']},{'id': '149', 'type': 'not_operator', 'children': ['150']},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'errors'} | def _validate(self, val: list, log: Optional[Logger] = None) -> Tuple[bool, List[str]]:
errors = []
if not isinstance(val, list):
errors.append(f"{self._variable_name}: {repr(val)} is not an array")
else:
for i in range(0, len(val)):
v = val[i]
if not conforms(v, self._type, self._context.NAMESPACE):
errors.append(f"{self._variable_name} element {i}: {v} is not a {self._type.__name__}")
if len(val) < self._min:
errors.append(
f"{self._variable_name}: at least {self._min} value{'s' if self._min > 1 else ''} required - "
f"element has {len(val) if len(val) else 'none'}")
if self._max is not None and len(val) > self._max:
errors.append(
f"{self._variable_name}: no more than {self._max} values permitted - element has {len(val)}")
if log:
for error in errors:
log.log(error)
return not bool(errors), errors |
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'type': 'block', 'children': ['17', '26', '35', '72', '176']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '22', 'type': 'argument_list', 'children': ['23', '24', '25']},{'id': '23', 'type': 'string', 'children': [], 'value': "'Issuer._sync_revoc >>> rr_id: %s, rr_size: %s'"},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'rr_size'},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '31']},{'id': '28', 'type': 'tuple_pattern', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'rev_reg_id2cred_def_id__tag'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '35', 'type': 'try_statement', 'children': ['36', '45']},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'await', 'children': ['39']},{'id': '39', 'type': 'call', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'get_cred_def'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '45', 'type': 'except_clause', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'AbsentCredDef'},{'id': '47', 'type': 'block', 'children': ['48', '59']},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '53', 'type': 'argument_list', 'children': ['54', '55', '58']},{'id': '54', 'type': 'string', 'children': [], 'value': "'Issuer._sync_revoc: <!< tails tree %s may be for another ledger; no cred def found on %s'"},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '57', 'type': 'identifier', 'children': [], 'value': '_dir_tails'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '59', 'type': 'raise_statement', 'children': ['60']},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'AbsentCredDef'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'string', 'children': [], 'value': "'Tails tree {} may be for another ledger; no cred def found on {}'"},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '67', 'type': 'argument_list', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '70', 'type': 'identifier', 'children': [], 'value': '_dir_tails'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '72', 'type': 'with_statement', 'children': ['73', '78']},{'id': '73', 'type': 'with_clause', 'children': ['74']},{'id': '74', 'type': 'with_item', 'children': ['75']},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'REVO_CACHE'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'lock'},{'id': '78', 'type': 'block', 'children': ['79', '89', '100']},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'revo_cache_entry'},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'REVO_CACHE'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '86', 'type': 'argument_list', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '88', 'type': 'None', 'children': []},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'assignment', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '92', 'type': 'conditional_expression', 'children': ['93', '94', '97'], 'value': 'if'},{'id': '93', 'type': 'None', 'children': []},{'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': 'is'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'revo_cache_entry'},{'id': '96', 'type': 'None', 'children': []},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'revo_cache_entry'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '100', 'type': 'if_statement', 'children': ['101', '104']},{'id': '101', 'type': 'comparison_operator', 'children': ['102', '103'], 'value': 'is'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '103', 'type': 'None', 'children': []},{'id': '104', 'type': 'block', 'children': ['105', '151']},{'id': '105', 'type': 'try_statement', 'children': ['106', '123']},{'id': '106', 'type': 'block', 'children': ['107']},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'assignment', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '110', 'type': 'await', 'children': ['111']},{'id': '111', 'type': 'call', 'children': ['112', '122']},{'id': '112', 'type': 'attribute', 'children': ['113', '121']},{'id': '113', 'type': 'call', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'Tails'},{'id': '115', 'type': 'argument_list', 'children': ['116', '119', '120']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '118', 'type': 'identifier', 'children': [], 'value': '_dir_tails'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '122', 'type': 'argument_list', 'children': []},{'id': '123', 'type': 'except_clause', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'AbsentTails'},{'id': '125', 'type': 'block', 'children': ['126', '135']},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'await', 'children': ['128']},{'id': '128', 'type': 'call', 'children': ['129', '132']},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '131', 'type': 'identifier', 'children': [], 'value': '_create_rev_reg'},{'id': '132', 'type': 'argument_list', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'rr_size'},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'assignment', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '138', 'type': 'await', 'children': ['139']},{'id': '139', 'type': 'call', 'children': ['140', '150']},{'id': '140', 'type': 'attribute', 'children': ['141', '149']},{'id': '141', 'type': 'call', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'Tails'},{'id': '143', 'type': 'argument_list', 'children': ['144', '147', '148']},{'id': '144', 'type': 'attribute', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '146', 'type': 'identifier', 'children': [], 'value': '_dir_tails'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '150', 'type': 'argument_list', 'children': []},{'id': '151', 'type': 'if_statement', 'children': ['152', '155', '166']},{'id': '152', 'type': 'comparison_operator', 'children': ['153', '154'], 'value': 'is'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'revo_cache_entry'},{'id': '154', 'type': 'None', 'children': []},{'id': '155', 'type': 'block', 'children': ['156']},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'assignment', 'children': ['158', '161']},{'id': '158', 'type': 'subscript', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'REVO_CACHE'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '161', 'type': 'call', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'RevoCacheEntry'},{'id': '163', 'type': 'argument_list', 'children': ['164', '165']},{'id': '164', 'type': 'None', 'children': []},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '166', 'type': 'else_clause', 'children': ['167']},{'id': '167', 'type': 'block', 'children': ['168']},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'assignment', 'children': ['170', '175']},{'id': '170', 'type': 'attribute', 'children': ['171', '174']},{'id': '171', 'type': 'subscript', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'REVO_CACHE'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'rr_id'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '176', 'type': 'expression_statement', 'children': ['177']},{'id': '177', 'type': 'call', 'children': ['178', '181']},{'id': '178', 'type': 'attribute', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '181', 'type': 'argument_list', 'children': ['182']},{'id': '182', 'type': 'string', 'children': [], 'value': "'Issuer._sync_revoc <<<'"} | async def _sync_revoc(self, rr_id: str, rr_size: int = None) -> None:
LOGGER.debug('Issuer._sync_revoc >>> rr_id: %s, rr_size: %s', rr_id, rr_size)
(cd_id, tag) = rev_reg_id2cred_def_id__tag(rr_id)
try:
await self.get_cred_def(cd_id)
except AbsentCredDef:
LOGGER.debug(
'Issuer._sync_revoc: <!< tails tree %s may be for another ledger; no cred def found on %s',
self._dir_tails,
cd_id)
raise AbsentCredDef('Tails tree {} may be for another ledger; no cred def found on {}'.format(
self._dir_tails,
cd_id))
with REVO_CACHE.lock:
revo_cache_entry = REVO_CACHE.get(rr_id, None)
tails = None if revo_cache_entry is None else revo_cache_entry.tails
if tails is None:
try:
tails = await Tails(self._dir_tails, cd_id, tag).open()
except AbsentTails:
await self._create_rev_reg(rr_id, rr_size)
tails = await Tails(self._dir_tails, cd_id, tag).open()
if revo_cache_entry is None:
REVO_CACHE[rr_id] = RevoCacheEntry(None, tails)
else:
REVO_CACHE[rr_id].tails = tails
LOGGER.debug('Issuer._sync_revoc <<<') |
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['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'new_ni'},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'deepcopy'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'ni'},{'id': '40', 'type': 'if_statement', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '42', 'type': 'block', 'children': ['43', '51']},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': '__check_prefix_conflict'},{'id': '48', 'type': 'argument_list', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'ni'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'call', 'children': ['53', '58']},{'id': '53', 'type': 'attribute', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'new_ni'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'prefixes'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '64', 'type': 'identifier', 'children': [], 'value': '__merge_schema_locations'},{'id': '65', 'type': 'argument_list', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'new_ni'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'schema_location'},{'id': '68', 'type': 'for_statement', 'children': ['69', '70', '73']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'new_ni'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'prefixes'},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '81']},{'id': '76', 'type': 'subscript', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '79', 'type': 'identifier', 'children': [], 'value': '__prefix_map'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'new_ni'},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'assignment', 'children': ['84', '91']},{'id': '84', 'type': 'subscript', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '87', 'type': 'identifier', 'children': [], 'value': '__ns_uri_map'},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'new_ni'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'new_ni'},{'id': '92', 'type': 'else_clause', 'children': ['93']},{'id': '93', 'type': 'block', 'children': ['94', '105', '114']},{'id': '94', 'type': 'if_statement', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '96', 'type': 'block', 'children': ['97']},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'call', 'children': ['99', '102']},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '101', 'type': 'identifier', 'children': [], 'value': '__check_prefix_conflict'},{'id': '102', 'type': 'argument_list', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'assignment', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'ni'},{'id': '108', 'type': 'call', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': '_NamespaceInfo'},{'id': '110', 'type': 'argument_list', 'children': ['111', '112', '113']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'schema_location'},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '118', 'type': 'identifier', 'children': [], 'value': '__add_namespaceinfo'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'ni'} | def add_namespace_uri(self, ns_uri, prefix=None, schema_location=None):
assert ns_uri
if ns_uri in self.__ns_uri_map:
ni = self.__lookup_uri(ns_uri)
new_ni = copy.deepcopy(ni)
if prefix:
self.__check_prefix_conflict(ni, prefix)
new_ni.prefixes.add(prefix)
self.__merge_schema_locations(new_ni, schema_location)
for p in new_ni.prefixes:
self.__prefix_map[p] = new_ni
self.__ns_uri_map[new_ni.uri] = new_ni
else:
if prefix:
self.__check_prefix_conflict(ns_uri, prefix)
ni = _NamespaceInfo(ns_uri, prefix, schema_location)
self.__add_namespaceinfo(ni) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_schemaloc_string'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ns_uris'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '13', 'type': 'string', 'children': [], 'value': '"\\n"'},{'id': '14', 'type': 'block', 'children': ['15', '30', '40', '44', '74', '80']},{'id': '15', 'type': 'if_statement', 'children': ['16', '18']},{'id': '16', 'type': 'not_operator', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'ns_uris'},{'id': '18', 'type': 'block', 'children': ['19']},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'ns_uris'},{'id': '22', 'type': 'call', 'children': ['23', '26']},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'iterkeys'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '29', 'type': 'identifier', 'children': [], 'value': '__ns_uri_map'},{'id': '30', 'type': 'if_statement', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'ns_uris'},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'ns_uris'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'schemalocs'},{'id': '43', 'type': 'list', 'children': [], 'value': '[]'},{'id': '44', 'type': 'for_statement', 'children': ['45', '46', '47']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'ns_uris'},{'id': '47', 'type': 'block', 'children': ['48', '57']},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'ni'},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'identifier', 'children': [], 'value': '__lookup_uri'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '57', 'type': 'if_statement', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'ni'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'schema_location'},{'id': '61', 'type': 'block', 'children': ['62']},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'schemalocs'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'string', 'children': [], 'value': '"{0.uri} {0.schema_location}"'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'ni'},{'id': '74', 'type': 'if_statement', 'children': ['75', '77']},{'id': '75', 'type': 'not_operator', 'children': ['76']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'schemalocs'},{'id': '77', 'type': 'block', 'children': ['78']},{'id': '78', 'type': 'return_statement', 'children': ['79']},{'id': '79', 'type': 'string', 'children': [], 'value': '""'},{'id': '80', 'type': 'return_statement', 'children': ['81']},{'id': '81', 'type': 'call', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'string', 'children': [], 'value': '\'xsi:schemaLocation="{0}"\''},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'call', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'schemalocs'} | def get_schemaloc_string(self, ns_uris=None, sort=False, delim="\n"):
if not ns_uris:
ns_uris = six.iterkeys(self.__ns_uri_map)
if sort:
ns_uris = sorted(ns_uris)
schemalocs = []
for ns_uri in ns_uris:
ni = self.__lookup_uri(ns_uri)
if ni.schema_location:
schemalocs.append("{0.uri} {0.schema_location}".format(ni))
if not schemalocs:
return ""
return 'xsi:schemaLocation="{0}"'.format(delim.join(schemalocs)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'tab_join'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'ToMerge'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'keycols'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'nullvals'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'renamer'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'returnrenaming'},{'id': '16', 'type': 'False', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'block', 'children': ['21', '23', '49', '76', '103', '168', '172', '235', '244', '250']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'string', 'children': [], 'value': "'''\n Database-join for tabular arrays.\n Wrapper for :func:`tabular.spreadsheet.join` that deals with the coloring \n and returns the result as a tabarray.\n Method calls::\n data = tabular.spreadsheet.join\n '''"},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '28']},{'id': '25', 'type': 'list_pattern', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'Result'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'Renaming'},{'id': '28', 'type': 'call', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'spreadsheet'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '32', 'type': 'argument_list', 'children': ['33', '34', '37', '40', '43', '46']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'ToMerge'},{'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'keycols'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'keycols'},{'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'nullvals'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'nullvals'},{'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'renamer'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'renamer'},{'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'returnrenaming'},{'id': '45', 'type': 'True', 'children': []},{'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '49', 'type': 'if_statement', 'children': ['50', '55', '64']},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '52', 'type': 'argument_list', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'ToMerge'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'ToMerge'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '63', 'type': 'argument_list', 'children': []},{'id': '64', 'type': 'else_clause', 'children': ['65']},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'call', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '74', 'type': 'argument_list', 'children': ['75']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'ToMerge'},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'Colorings'},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'list_comprehension', 'children': ['83', '100']},{'id': '83', 'type': 'conditional_expression', 'children': ['84', '91', '99'], 'value': 'if'},{'id': '84', 'type': 'tuple', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '86', 'type': 'attribute', 'children': ['87', '90']},{'id': '87', 'type': 'subscript', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'ToMerge'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'coloring'},{'id': '91', 'type': 'comparison_operator', 'children': ['92', '93'], 'value': 'in'},{'id': '92', 'type': 'string', 'children': [], 'value': "'coloring'"},{'id': '93', 'type': 'call', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'dir'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'subscript', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'ToMerge'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '99', 'type': 'dictionary', 'children': []},{'id': '100', 'type': 'for_in_clause', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '103', 'type': 'for_statement', 'children': ['104', '105', '106']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'Names'},{'id': '106', 'type': 'block', 'children': ['107']},{'id': '107', 'type': 'if_statement', 'children': ['108', '115']},{'id': '108', 'type': 'comparison_operator', 'children': ['109', '110'], 'value': 'in'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '110', 'type': 'call', 'children': ['111', '114']},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'Renaming'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '114', 'type': 'argument_list', 'children': []},{'id': '115', 'type': 'block', 'children': ['116', '122']},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '119', 'type': 'subscript', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'ToMerge'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '122', 'type': 'expression_statement', 'children': ['123']},{'id': '123', 'type': 'assignment', 'children': ['124', '127', '128']},{'id': '124', 'type': 'subscript', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'Colorings'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '127', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '128', 'type': 'call', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'list_comprehension', 'children': ['132', '159']},{'id': '132', 'type': 'tuple', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '134', 'type': 'list_comprehension', 'children': ['135', '152']},{'id': '135', 'type': 'conditional_expression', 'children': ['136', '137', '147'], 'value': 'if'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '137', 'type': 'not_operator', 'children': ['138']},{'id': '138', 'type': 'comparison_operator', 'children': ['139', '140'], 'value': 'in'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '140', 'type': 'call', 'children': ['141', '146']},{'id': '141', 'type': 'attribute', 'children': ['142', '145']},{'id': '142', 'type': 'subscript', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'Renaming'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '146', 'type': 'argument_list', 'children': []},{'id': '147', 'type': 'subscript', 'children': ['148', '151']},{'id': '148', 'type': 'subscript', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'Renaming'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '152', 'type': 'for_in_clause', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '154', 'type': 'subscript', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'coloring'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '159', 'type': 'for_in_clause', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '161', 'type': 'call', 'children': ['162', '167']},{'id': '162', 'type': 'attribute', 'children': ['163', '166']},{'id': '163', 'type': 'subscript', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'Colorings'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '167', 'type': 'argument_list', 'children': []},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'assignment', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'Coloring'},{'id': '171', 'type': 'dictionary', 'children': []},{'id': '172', 'type': 'for_statement', 'children': ['173', '174', '179']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '174', 'type': 'call', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'Colorings'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '178', 'type': 'argument_list', 'children': []},{'id': '179', 'type': 'block', 'children': ['180']},{'id': '180', 'type': 'for_statement', 'children': ['181', '182', '189']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '182', 'type': 'call', 'children': ['183', '188']},{'id': '183', 'type': 'attribute', 'children': ['184', '187']},{'id': '184', 'type': 'subscript', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'Colorings'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '188', 'type': 'argument_list', 'children': []},{'id': '189', 'type': 'block', 'children': ['190']},{'id': '190', 'type': 'if_statement', 'children': ['191', '198', '218']},{'id': '191', 'type': 'comparison_operator', 'children': ['192', '193'], 'value': 'in'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '193', 'type': 'call', 'children': ['194', '197']},{'id': '194', 'type': 'attribute', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'Coloring'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '197', 'type': 'argument_list', 'children': []},{'id': '198', 'type': 'block', 'children': ['199']},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '204']},{'id': '201', 'type': 'subscript', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'Coloring'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '204', 'type': 'call', 'children': ['205', '208']},{'id': '205', 'type': 'attribute', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'uniqify'},{'id': '208', 'type': 'argument_list', 'children': ['209']},{'id': '209', 'type': 'binary_operator', 'children': ['210', '213'], 'value': '+'},{'id': '210', 'type': 'subscript', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'Coloring'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '213', 'type': 'subscript', 'children': ['214', '217']},{'id': '214', 'type': 'subscript', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'Colorings'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '218', 'type': 'else_clause', 'children': ['219']},{'id': '219', 'type': 'block', 'children': ['220']},{'id': '220', 'type': 'expression_statement', 'children': ['221']},{'id': '221', 'type': 'assignment', 'children': ['222', '225']},{'id': '222', 'type': 'subscript', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'Coloring'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '225', 'type': 'call', 'children': ['226', '229']},{'id': '226', 'type': 'attribute', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'uniqify'},{'id': '229', 'type': 'argument_list', 'children': ['230']},{'id': '230', 'type': 'subscript', 'children': ['231', '234']},{'id': '231', 'type': 'subscript', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'Colorings'},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '235', 'type': 'expression_statement', 'children': ['236']},{'id': '236', 'type': 'assignment', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'Result'},{'id': '238', 'type': 'call', 'children': ['239', '242']},{'id': '239', 'type': 'attribute', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'Result'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'view'},{'id': '242', 'type': 'argument_list', 'children': ['243']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'tabarray'},{'id': '244', 'type': 'expression_statement', 'children': ['245']},{'id': '245', 'type': 'assignment', 'children': ['246', '249']},{'id': '246', 'type': 'attribute', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'Result'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'coloring'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'Coloring'},{'id': '250', 'type': 'if_statement', 'children': ['251', '252', '257']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'returnrenaming'},{'id': '252', 'type': 'block', 'children': ['253']},{'id': '253', 'type': 'return_statement', 'children': ['254']},{'id': '254', 'type': 'list', 'children': ['255', '256'], 'value': '[Result,Renaming]'},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'Result'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'Renaming'},{'id': '257', 'type': 'else_clause', 'children': ['258']},{'id': '258', 'type': 'block', 'children': ['259']},{'id': '259', 'type': 'return_statement', 'children': ['260']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'Result'} | def tab_join(ToMerge, keycols=None, nullvals=None, renamer=None,
returnrenaming=False, Names=None):
'''
Database-join for tabular arrays.
Wrapper for :func:`tabular.spreadsheet.join` that deals with the coloring
and returns the result as a tabarray.
Method calls::
data = tabular.spreadsheet.join
'''
[Result,Renaming] = spreadsheet.join(ToMerge, keycols=keycols,
nullvals=nullvals, renamer=renamer, returnrenaming=True, Names=Names)
if isinstance(ToMerge,dict):
Names = ToMerge.keys()
else:
Names = range(len(ToMerge))
Colorings = dict([(k,ToMerge[k].coloring) if 'coloring' in dir(ToMerge[k])
else {} for k in Names])
for k in Names:
if k in Renaming.keys():
l = ToMerge[k]
Colorings[k] = \
dict([(g, [n if not n in Renaming[k].keys() else Renaming[k][n]
for n in l.coloring[g]]) for g in Colorings[k].keys()])
Coloring = {}
for k in Colorings.keys():
for j in Colorings[k].keys():
if j in Coloring.keys():
Coloring[j] = utils.uniqify(Coloring[j] + Colorings[k][j])
else:
Coloring[j] = utils.uniqify(Colorings[k][j])
Result = Result.view(tabarray)
Result.coloring = Coloring
if returnrenaming:
return [Result,Renaming]
else:
return Result |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '26']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'aggregate'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'On'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'AggFuncDict'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'AggFunc'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 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'type': 'assignment', 'children': ['32', '35']},{'id': '32', 'type': 'list_pattern', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'spreadsheet'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'aggregate'},{'id': '39', 'type': 'argument_list', 'children': ['40', '43', '46', '49', '52', '55', '58']},{'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'On'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'On'},{'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'AggFuncDict'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'AggFuncDict'},{'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'AggFunc'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'AggFunc'},{'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'AggList'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'AggList'},{'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'returnsort'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'returnsort'},{'id': '58', 'type': 'keyword_argument', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'keyfuncdict'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'keyfuncdict'},{'id': '61', 'type': 'else_clause', 'children': ['62']},{'id': '62', 'type': 'block', 'children': ['63']},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '66', 'type': 'call', 'children': ['67', '70']},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'spreadsheet'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'aggregate'},{'id': '70', 'type': 'argument_list', 'children': ['71', '74', '77', '80', '83', '86', '89', '92']},{'id': '71', 'type': 'keyword_argument', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '74', 'type': 'keyword_argument', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'On'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'On'},{'id': '77', 'type': 'keyword_argument', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'AggFuncDict'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'AggFuncDict'},{'id': '80', 'type': 'keyword_argument', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'AggFunc'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'AggFunc'},{'id': '83', 'type': 'keyword_argument', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'AggList'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'AggList'},{'id': '86', 'type': 'keyword_argument', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'returnsort'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'returnsort'},{'id': '89', 'type': 'keyword_argument', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'KeepOthers'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'KeepOthers'},{'id': '92', 'type': 'keyword_argument', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'keyfuncdict'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'keyfuncdict'},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '98', 'type': 'call', 'children': ['99', '102']},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'view'},{'id': '102', 'type': 'argument_list', 'children': ['103']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'tabarray'},{'id': '104', 'type': 'expression_statement', 'children': ['105']},{'id': '105', 'type': 'assignment', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'coloring'},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'coloring'},{'id': '112', 'type': 'if_statement', 'children': ['113', '114', '119']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'returnsort'},{'id': '114', 'type': 'block', 'children': ['115']},{'id': '115', 'type': 'return_statement', 'children': ['116']},{'id': '116', 'type': 'list', 'children': ['117', '118'], 'value': '[data, s]'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '119', 'type': 'else_clause', 'children': ['120']},{'id': '120', 'type': 'block', 'children': ['121']},{'id': '121', 'type': 'return_statement', 'children': ['122']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'data'} | def aggregate(self, On=None, AggFuncDict=None, AggFunc=None, AggList =
None, returnsort=False,KeepOthers=True, keyfuncdict=None):
if returnsort:
[data, s] = spreadsheet.aggregate(X=self,
On=On,
AggFuncDict=AggFuncDict,
AggFunc=AggFunc,
AggList=AggList,
returnsort=returnsort,
keyfuncdict=keyfuncdict)
else:
data = spreadsheet.aggregate(X=self, On=On, AggFuncDict=AggFuncDict,
AggFunc=AggFunc, AggList = AggList, returnsort=returnsort,
KeepOthers=KeepOthers,
keyfuncdict=keyfuncdict)
data = data.view(tabarray)
data.coloring = self.coloring
if returnsort:
return [data, s]
else:
return data |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'argsort'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '9', '12']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '7', 'type': 'unary_operator', 'children': ['8'], 'value': '-'},{'id': '8', 'type': 'integer', 'children': [], 'value': '1'},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'kind'},{'id': '11', 'type': 'string', 'children': [], 'value': "'quicksort'"},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '14', 'type': 'None', 'children': []},{'id': '15', 'type': 'block', 'children': ['16', '33', '44']},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'index_array'},{'id': '19', 'type': 'call', 'children': ['20', '27']},{'id': '20', 'type': 'attribute', 'children': ['21', '26']},{'id': '21', 'type': 'attribute', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'core'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'fromnumeric'},{'id': '26', 'type': 'identifier', 'children': [], 'value': '_wrapit'},{'id': '27', 'type': 'argument_list', 'children': ['28', '29', '30', '31', '32']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '29', 'type': 'string', 'children': [], 'value': "'argsort'"},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'kind'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'index_array'},{'id': '36', 'type': 'call', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'index_array'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'view'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'ndarray'},{'id': '44', 'type': 'return_statement', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'index_array'} | def argsort(self, axis=-1, kind='quicksort', order=None):
index_array = np.core.fromnumeric._wrapit(self, 'argsort', axis,
kind, order)
index_array = index_array.view(np.ndarray)
return index_array |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_finalize_namespaces'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ns_dict'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '33', '55', '61', '84', '95']},{'id': '9', 'type': 'if_statement', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'ns_dict'},{'id': '11', 'type': 'block', 'children': ['12']},{'id': '12', 'type': 'for_statement', 'children': ['13', '16', '22']},{'id': '13', 'type': 'pattern_list', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'ns'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'alias'},{'id': '16', 'type': 'call', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'iteritems'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'ns_dict'},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '30']},{'id': '25', 'type': 'attribute', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': '_collected_namespaces'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'add_namespace_uri'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'ns'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'alias'},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '40']},{'id': '35', 'type': 'attribute', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '38', 'type': 'identifier', 'children': [], 'value': '_collected_namespaces'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'add_namespace_uri'},{'id': '40', 'type': 'argument_list', 'children': ['41', '48']},{'id': '41', 'type': 'keyword_argument', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'idgen'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'get_id_namespace'},{'id': '47', 'type': 'argument_list', 'children': []},{'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '50', 'type': 'call', 'children': ['51', '54']},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'idgen'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'get_id_namespace_alias'},{'id': '54', 'type': 'argument_list', 'children': []},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '59', 'type': 'identifier', 'children': [], 'value': '_fix_example_namespace'},{'id': '60', 'type': 'argument_list', 'children': []},{'id': '61', 'type': 'for_statement', 'children': ['62', '65', '73']},{'id': '62', 'type': 'pattern_list', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '65', 'type': 'call', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'iteritems'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '72', 'type': 'identifier', 'children': [], 'value': '_input_namespaces'},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'call', 'children': ['76', '81']},{'id': '76', 'type': 'attribute', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '79', 'type': 'identifier', 'children': [], 'value': '_collected_namespaces'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'add_namespace_uri'},{'id': '81', 'type': 'argument_list', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '91']},{'id': '86', 'type': 'attribute', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '89', 'type': 'identifier', 'children': [], 'value': '_collected_namespaces'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'import_from'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'namespaces'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'XML_NAMESPACES'},{'id': '95', 'type': 'for_statement', 'children': ['96', '97', '102']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '97', 'type': 'attribute', 'children': ['98', '101']},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '100', 'type': 'identifier', 'children': [], 'value': '_collected_namespaces'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'namespace_uris'},{'id': '102', 'type': 'block', 'children': ['103', '114', '118', '129', '153', '165']},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'assignment', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'preferred_prefix'},{'id': '106', 'type': 'call', 'children': ['107', '112']},{'id': '107', 'type': 'attribute', 'children': ['108', '111']},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '110', 'type': 'identifier', 'children': [], 'value': '_collected_namespaces'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'preferred_prefix_for_namespace'},{'id': '112', 'type': 'argument_list', 'children': ['113']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '114', 'type': 'if_statement', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'preferred_prefix'},{'id': '116', 'type': 'block', 'children': ['117']},{'id': '117', 'type': 'continue_statement', 'children': []},{'id': '118', 'type': 'expression_statement', 'children': ['119']},{'id': '119', 'type': 'assignment', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'prefixes'},{'id': '121', 'type': 'call', 'children': ['122', '127']},{'id': '122', 'type': 'attribute', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '125', 'type': 'identifier', 'children': [], 'value': '_collected_namespaces'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'get_prefixes'},{'id': '127', 'type': 'argument_list', 'children': ['128']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '129', 'type': 'if_statement', 'children': ['130', '131', '142']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'prefixes'},{'id': '131', 'type': 'block', 'children': ['132']},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '135', 'type': 'call', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '137', 'type': 'argument_list', 'children': ['138']},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'iter'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'prefixes'},{'id': '142', 'type': 'else_clause', 'children': ['143']},{'id': '143', 'type': 'block', 'children': ['144']},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '147', 'type': 'call', 'children': ['148', '151']},{'id': '148', 'type': 'attribute', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'namespaces'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'lookup_name'},{'id': '151', 'type': 'argument_list', 'children': ['152']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '153', 'type': 'if_statement', 'children': ['154', '157']},{'id': '154', 'type': 'comparison_operator', 'children': ['155', '156'], 'value': 'is'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '156', 'type': 'None', 'children': []},{'id': '157', 'type': 'block', 'children': ['158']},{'id': '158', 'type': 'raise_statement', 'children': ['159']},{'id': '159', 'type': 'call', 'children': ['160', '163']},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'namespaces'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'NoPrefixesError'},{'id': '163', 'type': 'argument_list', 'children': ['164']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '165', 'type': 'expression_statement', 'children': ['166']},{'id': '166', 'type': 'call', 'children': ['167', '172']},{'id': '167', 'type': 'attribute', 'children': ['168', '171']},{'id': '168', 'type': 'attribute', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '170', 'type': 'identifier', 'children': [], 'value': '_collected_namespaces'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'set_preferred_prefix_for_namespace'},{'id': '172', 'type': 'argument_list', 'children': ['173', '176', '179']},{'id': '173', 'type': 'keyword_argument', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'ns_uri'},{'id': '176', 'type': 'keyword_argument', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '179', 'type': 'keyword_argument', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'add_if_not_exist'},{'id': '181', 'type': 'True', 'children': []} | def _finalize_namespaces(self, ns_dict=None):
if ns_dict:
for ns, alias in six.iteritems(ns_dict):
self._collected_namespaces.add_namespace_uri(ns, alias)
self._collected_namespaces.add_namespace_uri(
ns_uri=idgen.get_id_namespace(),
prefix=idgen.get_id_namespace_alias()
)
self._fix_example_namespace()
for prefix, uri in six.iteritems(self._input_namespaces):
self._collected_namespaces.add_namespace_uri(uri, prefix)
self._collected_namespaces.import_from(namespaces.XML_NAMESPACES)
for ns_uri in self._collected_namespaces.namespace_uris:
preferred_prefix = self._collected_namespaces.preferred_prefix_for_namespace(ns_uri)
if preferred_prefix:
continue
prefixes = self._collected_namespaces.get_prefixes(ns_uri)
if prefixes:
prefix = next(iter(prefixes))
else:
prefix = namespaces.lookup_name(ns_uri)
if prefix is None:
raise namespaces.NoPrefixesError(ns_uri)
self._collected_namespaces.set_preferred_prefix_for_namespace(
ns_uri=ns_uri,
prefix=prefix,
add_if_not_exist=True
) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'update_empty_fields'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'dictionary_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '7', 'type': 'block', 'children': ['8', '26', '44', '62', '93', '111', '127', '144', '162']},{'id': '8', 'type': 'if_statement', 'children': ['9', '14']},{'id': '9', 'type': 'comparison_operator', 'children': ['10', '13'], 'value': 'is'},{'id': '10', 'type': 'attribute', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '12', 'type': 'identifier', 'children': [], 'value': '_is_deprecated'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '19', 'type': 'identifier', 'children': [], 'value': '_is_deprecated'},{'id': '20', 'type': 'call', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '24', 'type': 'argument_list', 'children': ['25']},{'id': '25', 'type': 'string', 'children': [], 'value': "'is_deprecated'"},{'id': '26', 'type': 'if_statement', 'children': ['27', '32']},{'id': '27', 'type': 'comparison_operator', 'children': ['28', '31'], 'value': 'is'},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': '_is_dubious'},{'id': '31', 'type': 'None', 'children': []},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '37', 'type': 'identifier', 'children': [], 'value': '_is_dubious'},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'string', 'children': [], 'value': "'is_dubious'"},{'id': '44', 'type': 'if_statement', 'children': ['45', '50']},{'id': '45', 'type': 'comparison_operator', 'children': ['46', '49'], 'value': 'is'},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '48', 'type': 'identifier', 'children': [], 'value': '_is_synonym'},{'id': '49', 'type': 'None', 'children': []},{'id': '50', 'type': 'block', 'children': ['51']},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '55', 'type': 'identifier', 'children': [], 'value': '_is_synonym'},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'string', 'children': [], 'value': "'is_synonym'"},{'id': '62', 'type': 'if_statement', 'children': ['63', '68']},{'id': '63', 'type': 'comparison_operator', 'children': ['64', '67'], 'value': 'is'},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '66', 'type': 'identifier', 'children': [], 'value': '_synonyms'},{'id': '67', 'type': 'identifier', 'children': [], 'value': '_EMPTY_TUPLE'},{'id': '68', 'type': 'block', 'children': ['69', '80']},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '73', 'type': 'identifier', 'children': [], 'value': '_synonyms'},{'id': '74', 'type': 'call', 'children': ['75', '78']},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '78', 'type': 'argument_list', 'children': ['79']},{'id': '79', 'type': 'string', 'children': [], 'value': "'synonyms'"},{'id': '80', 'type': 'if_statement', 'children': ['81', '86']},{'id': '81', 'type': 'comparison_operator', 'children': ['82', '85'], 'value': 'is'},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '84', 'type': 'identifier', 'children': [], 'value': '_synonyms'},{'id': '85', 'type': 'None', 'children': []},{'id': '86', 'type': 'block', 'children': ['87']},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '92']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '91', 'type': 'identifier', 'children': [], 'value': '_synonyms'},{'id': '92', 'type': 'identifier', 'children': [], 'value': '_EMPTY_TUPLE'},{'id': '93', 'type': 'if_statement', 'children': ['94', '99']},{'id': '94', 'type': 'comparison_operator', 'children': ['95', '98'], 'value': 'is'},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'rank'},{'id': '98', 'type': 'None', 'children': []},{'id': '99', 'type': 'block', 'children': ['100']},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'assignment', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '104', 'type': 'identifier', 'children': [], 'value': '_rank'},{'id': '105', 'type': 'call', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '109', 'type': 'argument_list', 'children': ['110']},{'id': '110', 'type': 'string', 'children': [], 'value': "'rank'"},{'id': '111', 'type': 'if_statement', 'children': ['112', '115']},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '114', 'type': 'identifier', 'children': [], 'value': '_nomenclature_code'},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '120', 'type': 'identifier', 'children': [], 'value': '_nomenclature_code'},{'id': '121', 'type': 'call', 'children': ['122', '125']},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'string', 'children': [], 'value': "'nomenclature_code'"},{'id': '127', 'type': 'if_statement', 'children': ['128', '132']},{'id': '128', 'type': 'not_operator', 'children': ['129']},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '131', 'type': 'identifier', 'children': [], 'value': '_unique_name'},{'id': '132', 'type': 'block', 'children': ['133']},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '138']},{'id': '135', 'type': 'attribute', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '137', 'type': 'identifier', 'children': [], 'value': '_unique_name'},{'id': '138', 'type': 'call', 'children': ['139', '142']},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '142', 'type': 'argument_list', 'children': ['143']},{'id': '143', 'type': 'string', 'children': [], 'value': "'unique_name'"},{'id': '144', 'type': 'if_statement', 'children': ['145', '150']},{'id': '145', 'type': 'comparison_operator', 'children': ['146', '149'], 'value': 'is'},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '148', 'type': 'identifier', 'children': [], 'value': '_taxonomic_lineage'},{'id': '149', 'type': 'None', 'children': []},{'id': '150', 'type': 'block', 'children': ['151']},{'id': '151', 'type': 'expression_statement', 'children': ['152']},{'id': '152', 'type': 'assignment', 'children': ['153', '156']},{'id': '153', 'type': 'attribute', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '155', 'type': 'identifier', 'children': [], 'value': '_taxonomic_lineage'},{'id': '156', 'type': 'call', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'string', 'children': [], 'value': "'taxonomic_lineage'"},{'id': '162', 'type': 'if_statement', 'children': ['163', '168']},{'id': '163', 'type': 'comparison_operator', 'children': ['164', '167'], 'value': 'is'},{'id': '164', 'type': 'attribute', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '166', 'type': 'identifier', 'children': [], 'value': '_parent'},{'id': '167', 'type': 'None', 'children': []},{'id': '168', 'type': 'block', 'children': ['169', '180']},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'assignment', 'children': ['171', '174']},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '173', 'type': 'identifier', 'children': [], 'value': '_parent'},{'id': '174', 'type': 'call', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '178', 'type': 'argument_list', 'children': ['179']},{'id': '179', 'type': 'string', 'children': [], 'value': "'parent'"},{'id': '180', 'type': 'if_statement', 'children': ['181', '196']},{'id': '181', 'type': 'boolean_operator', 'children': ['182', '193'], 'value': 'and'},{'id': '182', 'type': 'boolean_operator', 'children': ['183', '188'], 'value': 'and'},{'id': '183', 'type': 'comparison_operator', 'children': ['184', '187'], 'value': 'is'},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '186', 'type': 'identifier', 'children': [], 'value': '_parent'},{'id': '187', 'type': 'None', 'children': []},{'id': '188', 'type': 'comparison_operator', 'children': ['189', '192'], 'value': 'is'},{'id': '189', 'type': 'attribute', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '191', 'type': 'identifier', 'children': [], 'value': '_taxomachine_wrapper'},{'id': '192', 'type': 'None', 'children': []},{'id': '193', 'type': 'attribute', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '195', 'type': 'identifier', 'children': [], 'value': '_taxonomic_lineage'},{'id': '196', 'type': 'block', 'children': ['197']},{'id': '197', 'type': 'expression_statement', 'children': ['198']},{'id': '198', 'type': 'call', 'children': ['199', '202']},{'id': '199', 'type': 'attribute', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '201', 'type': 'identifier', 'children': [], 'value': '_fill_parent_attr'},{'id': '202', 'type': 'argument_list', 'children': []} | def update_empty_fields(self, **kwargs):
if self._is_deprecated is None:
self._is_deprecated = kwargs.get('is_deprecated')
if self._is_dubious is None:
self._is_dubious = kwargs.get('is_dubious')
if self._is_synonym is None:
self._is_synonym = kwargs.get('is_synonym')
if self._synonyms is _EMPTY_TUPLE:
self._synonyms = kwargs.get('synonyms')
if self._synonyms is None:
self._synonyms = _EMPTY_TUPLE
if self.rank is None:
self._rank = kwargs.get('rank')
if self._nomenclature_code:
self._nomenclature_code = kwargs.get('nomenclature_code')
if not self._unique_name:
self._unique_name = kwargs.get('unique_name')
if self._taxonomic_lineage is None:
self._taxonomic_lineage = kwargs.get('taxonomic_lineage')
if self._parent is None:
self._parent = kwargs.get('parent')
if self._parent is None and self._taxomachine_wrapper is not None and self._taxonomic_lineage:
self._fill_parent_attr() |
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'type': 'identifier', 'children': [], 'value': 'filt_dflt_incl'},{'id': '16', 'type': 'type', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '18', 'type': 'False', 'children': []},{'id': '19', 'type': 'type', 'children': ['20']},{'id': '20', 'type': 'tuple', 'children': ['21', '24']},{'id': '21', 'type': 'subscript', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'Set'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '25', 'type': 'block', 'children': ['26', '35', '44', '48', '63', '72', '78', '118', '305', '321', '332', '340']},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '31', 'type': 'argument_list', 'children': ['32', '33', '34']},{'id': '32', 'type': 'string', 'children': [], 'value': "'HolderProver.get_creds >>> proof_req_json: %s, filt: %s'"},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'proof_req_json'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '35', 'type': 'if_statement', 'children': ['36', '39']},{'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': 'is'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '38', 'type': 'None', 'children': []},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '43', 'type': 'dictionary', 'children': []},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '47', 'type': 'None', 'children': []},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'creds_json'},{'id': '51', 'type': 'await', 'children': ['52']},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'anoncreds'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'prover_get_credentials_for_proof_req'},{'id': '56', 'type': 'argument_list', 'children': ['57', '62']},{'id': '57', 'type': 'attribute', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'wallet'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'handle'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'proof_req_json'},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'creds'},{'id': '66', 'type': 'call', 'children': ['67', '70']},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'loads'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'creds_json'},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'cred_ids'},{'id': '75', 'type': 'call', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '77', 'type': 'argument_list', 'children': []},{'id': '78', 'type': 'if_statement', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '80', 'type': 'block', 'children': ['81']},{'id': '81', 'type': 'for_statement', 'children': ['82', '83', '84']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '84', 'type': 'block', 'children': ['85']},{'id': '85', 'type': 'try_statement', 'children': ['86', '100']},{'id': '86', 'type': 'block', 'children': ['87']},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'call', 'children': ['89', '92']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'loads'},{'id': '92', 'type': 'argument_list', 'children': ['93']},{'id': '93', 'type': 'await', 'children': ['94']},{'id': '94', 'type': 'call', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'get_cred_def'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '100', 'type': 'except_clause', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'AbsentCredDef'},{'id': '102', 'type': 'block', 'children': ['103', '111']},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '108']},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '108', 'type': 'argument_list', 'children': ['109', '110']},{'id': '109', 'type': 'string', 'children': [], 'value': "'HolderProver.get_creds: ignoring filter criterion, no cred def on %s'"},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'call', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '116', 'type': 'argument_list', 'children': ['117']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'cd_id'},{'id': '118', 'type': 'for_statement', 'children': ['119', '120', '133']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'inner_creds'},{'id': '120', 'type': 'call', 'children': ['121', '132']},{'id': '121', 'type': 'attribute', 'children': ['122', '131']},{'id': '122', 'type': 'dictionary', 'children': ['123', '127']},{'id': '123', 'type': 'dictionary_splat', 'children': ['124']},{'id': '124', 'type': 'subscript', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'creds'},{'id': '126', 'type': 'string', 'children': [], 'value': "'attrs'"},{'id': '127', 'type': 'dictionary_splat', 'children': ['128']},{'id': '128', 'type': 'subscript', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'creds'},{'id': '130', 'type': 'string', 'children': [], 'value': "'predicates'"},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '132', 'type': 'argument_list', 'children': []},{'id': '133', 'type': 'block', 'children': ['134']},{'id': '134', 'type': 'for_statement', 'children': ['135', '136', '137']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'cred'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'inner_creds'},{'id': '137', 'type': 'block', 'children': ['138', '144']},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'cred_info'},{'id': '141', 'type': 'subscript', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'cred'},{'id': '143', 'type': 'string', 'children': [], 'value': "'cred_info'"},{'id': '144', 'type': 'if_statement', 'children': ['145', '146', '294']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '146', 'type': 'block', 'children': ['147', '153', '171', '225', '285']},{'id': '147', 'type': 'expression_statement', 'children': ['148']},{'id': '148', 'type': 'assignment', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'cred_cd_id'},{'id': '150', 'type': 'subscript', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'cred_info'},{'id': '152', 'type': 'string', 'children': [], 'value': "'cred_def_id'"},{'id': '153', 'type': 'if_statement', 'children': ['154', '157']},{'id': '154', 'type': 'comparison_operator', 'children': ['155', '156'], 'value': 'not'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'cred_cd_id'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '157', 'type': 'block', 'children': ['158', '170']},{'id': '158', 'type': 'if_statement', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'filt_dflt_incl'},{'id': '160', 'type': 'block', 'children': ['161']},{'id': '161', 'type': 'expression_statement', 'children': ['162']},{'id': '162', 'type': 'call', 'children': ['163', '166']},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'cred_ids'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '166', 'type': 'argument_list', 'children': ['167']},{'id': '167', 'type': 'subscript', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'cred_info'},{'id': '169', 'type': 'string', 'children': [], 'value': "'referent'"},{'id': '170', 'type': 'continue_statement', 'children': []},{'id': '171', 'type': 'if_statement', 'children': ['172', '180']},{'id': '172', 'type': 'comparison_operator', 'children': ['173', '174'], 'value': 'in'},{'id': '173', 'type': 'string', 'children': [], 'value': "'attr-match'"},{'id': '174', 'type': '()', 'children': ['175']},{'id': '175', 'type': 'boolean_operator', 'children': ['176', '179'], 'value': 'or'},{'id': '176', 'type': 'subscript', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'cred_cd_id'},{'id': '179', 'type': 'dictionary', 'children': []},{'id': '180', 'type': 'block', 'children': ['181']},{'id': '181', 'type': 'if_statement', 'children': ['182', '223']},{'id': '182', 'type': 'not_operator', 'children': ['183']},{'id': '183', 'type': 'comparison_operator', 'children': ['184', '216'], 'value': '<='},{'id': '184', 'type': 'call', 'children': ['185', '215']},{'id': '185', 'type': 'attribute', 'children': ['186', '214']},{'id': '186', 'type': 'dictionary_comprehension', 'children': ['187', '203']},{'id': '187', 'type': 'pair', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '189', 'type': 'call', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '191', 'type': 'argument_list', 'children': ['192']},{'id': '192', 'type': 'subscript', 'children': ['193', '202']},{'id': '193', 'type': 'call', 'children': ['194', '199']},{'id': '194', 'type': 'attribute', 'children': ['195', '198']},{'id': '195', 'type': 'subscript', 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'children': [], 'value': 'get'},{'id': '211', 'type': 'argument_list', 'children': ['212', '213']},{'id': '212', 'type': 'string', 'children': [], 'value': "'attr-match'"},{'id': '213', 'type': 'dictionary', 'children': []},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '215', 'type': 'argument_list', 'children': []},{'id': '216', 'type': 'call', 'children': ['217', '222']},{'id': '217', 'type': 'attribute', 'children': ['218', '221']},{'id': '218', 'type': 'subscript', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'cred_info'},{'id': '220', 'type': 'string', 'children': [], 'value': "'attrs'"},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '222', 'type': 'argument_list', 'children': []},{'id': '223', 'type': 'block', 'children': ['224']},{'id': '224', 'type': 'continue_statement', 'children': []},{'id': '225', 'type': 'if_statement', 'children': ['226', '234']},{'id': '226', 'type': 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'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '257', 'type': 'subscript', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'cred_info'},{'id': '259', 'type': 'string', 'children': [], 'value': "'attrs'"},{'id': '260', 'type': '()', 'children': ['261']},{'id': '261', 'type': 'comparison_operator', 'children': ['262', '270'], 'value': '<'},{'id': '262', 'type': 'call', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '264', 'type': 'argument_list', 'children': ['265']},{'id': '265', 'type': 'subscript', 'children': ['266', '269']},{'id': '266', 'type': 'subscript', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'cred_info'},{'id': '268', 'type': 'string', 'children': [], 'value': "'attrs'"},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '270', 'type': 'call', 'children': ['271', '272']},{'id': '271', 'type': 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'subscript', 'children': ['303', '304']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'cred_info'},{'id': '304', 'type': 'string', 'children': [], 'value': "'referent'"},{'id': '305', 'type': 'if_statement', 'children': ['306', '307']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'filt'},{'id': '307', 'type': 'block', 'children': ['308']},{'id': '308', 'type': 'expression_statement', 'children': ['309']},{'id': '309', 'type': 'assignment', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'creds'},{'id': '311', 'type': 'call', 'children': ['312', '315']},{'id': '312', 'type': 'attribute', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'loads'},{'id': '315', 'type': 'argument_list', 'children': ['316']},{'id': '316', 'type': 'call', 'children': ['317', '318']},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'prune_creds_json'},{'id': '318', 'type': 'argument_list', 'children': ['319', '320']},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'creds'},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'cred_ids'},{'id': '321', 'type': 'expression_statement', 'children': ['322']},{'id': '322', 'type': 'assignment', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '324', 'type': 'tuple', 'children': ['325', '326']},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'cred_ids'},{'id': '326', 'type': 'call', 'children': ['327', '330']},{'id': '327', 'type': 'attribute', 'children': ['328', '329']},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '330', 'type': 'argument_list', 'children': ['331']},{'id': '331', 'type': 'identifier', 'children': [], 'value': 'creds'},{'id': '332', 'type': 'expression_statement', 'children': ['333']},{'id': '333', 'type': 'call', 'children': ['334', '337']},{'id': '334', 'type': 'attribute', 'children': ['335', '336']},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'LOGGER'},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '337', 'type': 'argument_list', 'children': ['338', '339']},{'id': '338', 'type': 'string', 'children': [], 'value': "'HolderProver.get_creds <<< %s'"},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '340', 'type': 'return_statement', 'children': ['341']},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'rv'} | async def get_creds(self, proof_req_json: str, filt: dict = None, filt_dflt_incl: bool = False) -> (Set[str], str):
LOGGER.debug('HolderProver.get_creds >>> proof_req_json: %s, filt: %s', proof_req_json, filt)
if filt is None:
filt = {}
rv = None
creds_json = await anoncreds.prover_get_credentials_for_proof_req(self.wallet.handle, proof_req_json)
creds = json.loads(creds_json)
cred_ids = set()
if filt:
for cd_id in filt:
try:
json.loads(await self.get_cred_def(cd_id))
except AbsentCredDef:
LOGGER.warning('HolderProver.get_creds: ignoring filter criterion, no cred def on %s', cd_id)
filt.pop(cd_id)
for inner_creds in {**creds['attrs'], **creds['predicates']}.values():
for cred in inner_creds:
cred_info = cred['cred_info']
if filt:
cred_cd_id = cred_info['cred_def_id']
if cred_cd_id not in filt:
if filt_dflt_incl:
cred_ids.add(cred_info['referent'])
continue
if 'attr-match' in (filt[cred_cd_id] or {}):
if not {k: str(filt[cred_cd_id].get('attr-match', {})[k])
for k in filt[cred_cd_id].get('attr-match', {})}.items() <= cred_info['attrs'].items():
continue
if 'minima' in (filt[cred_cd_id] or {}):
minima = filt[cred_cd_id].get('minima', {})
try:
if any((attr not in cred_info['attrs'])
or (int(cred_info['attrs'][attr]) < int(minima[attr]))
for attr in minima):
continue
except ValueError:
continue
cred_ids.add(cred_info['referent'])
else:
cred_ids.add(cred_info['referent'])
if filt:
creds = json.loads(prune_creds_json(creds, cred_ids))
rv = (cred_ids, json.dumps(creds))
LOGGER.debug('HolderProver.get_creds <<< %s', rv)
return rv |
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[], 'value': '[]'},{'id': '89', 'type': 'block', 'children': ['90', '98', '109']},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'call', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '93', 'type': 'argument_list', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'before'},{'id': '95', 'type': 'keyword_argument', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '97', 'type': 'string', 'children': [], 'value': "' '"},{'id': '98', 'type': 'for_statement', 'children': ['99', '100', '101']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'processor'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '101', 'type': 'block', 'children': ['102']},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'processor'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'display_metrics'},{'id': '107', 'type': 'argument_list', 'children': ['108']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'metrics'},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'call', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '112', 'type': 'argument_list', 'children': ['113']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'after'},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'assignment', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '117', 'type': 'dictionary', 'children': []},{'id': '118', 'type': 'for_statement', 'children': ['119', '120', '121']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'metrics'},{'id': '121', 'type': 'block', 'children': ['122', '130', '136', '152', '160']},{'id': '122', 'type': 'expression_statement', 'children': ['123']},{'id': '123', 'type': 'assignment', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '125', 'type': 'subscript', 'children': ['126', '129']},{'id': '126', 'type': 'subscript', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'metrics'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '129', 'type': 'string', 'children': [], 'value': "'language'"},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'assignment', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'has_key'},{'id': '133', 'type': 'comparison_operator', 'children': ['134', '135'], 'value': 'in'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '136', 'type': 'if_statement', 'children': ['137', '139']},{'id': '137', 'type': 'not_operator', 'children': ['138']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'has_key'},{'id': '139', 'type': 'block', 'children': ['140']},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '145']},{'id': '142', 'type': 'subscript', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '145', 'type': 'dictionary', 'children': ['146', '149']},{'id': '146', 'type': 'pair', 'children': ['147', '148']},{'id': '147', 'type': 'string', 'children': [], 'value': "'file_count'"},{'id': '148', 'type': 'integer', 'children': [], 'value': '0'},{'id': '149', 'type': 'pair', 'children': ['150', '151']},{'id': '150', 'type': 'string', 'children': [], 'value': "'language'"},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'augmented_assignment', 'children': ['154', '159'], 'value': '+='},{'id': '154', 'type': 'subscript', 'children': ['155', '158']},{'id': '155', 'type': 'subscript', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '158', 'type': 'string', 'children': [], 'value': "'file_count'"},{'id': '159', 'type': 'integer', 'children': [], 'value': '1'},{'id': '160', 'type': 'for_statement', 'children': ['161', '162', '165']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '162', 'type': 'subscript', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'metrics'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '165', 'type': 'block', 'children': ['166', '175', '187']},{'id': '166', 'type': 'if_statement', 'children': ['167', '173']},{'id': '167', 'type': 'comparison_operator', 'children': ['168', '169'], 'value': 'not'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '169', 'type': 'list', 'children': ['170', '171', '172'], 'value': "['sloc', 'comments', 'mccabe']"},{'id': '170', 'type': 'string', 'children': [], 'value': "'sloc'"},{'id': '171', 'type': 'string', 'children': [], 'value': "'comments'"},{'id': '172', 'type': 'string', 'children': [], 'value': "'mccabe'"},{'id': '173', 'type': 'block', 'children': ['174']},{'id': '174', 'type': 'continue_statement', 'children': []},{'id': '175', 'type': 'if_statement', 'children': ['176', '178']},{'id': '176', 'type': 'not_operator', 'children': ['177']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'has_key'},{'id': '178', 'type': 'block', 'children': ['179']},{'id': '179', 'type': 'expression_statement', 'children': ['180']},{'id': '180', 'type': 'assignment', 'children': ['181', '186']},{'id': '181', 'type': 'subscript', 'children': ['182', '185']},{'id': '182', 'type': 'subscript', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '186', 'type': 'integer', 'children': [], 'value': '0'},{'id': '187', 'type': 'expression_statement', 'children': ['188']},{'id': '188', 'type': 'augmented_assignment', 'children': ['189', '194'], 'value': '+='},{'id': '189', 'type': 'subscript', 'children': ['190', '193']},{'id': '190', 'type': 'subscript', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '194', 'type': 'subscript', 'children': ['195', '198']},{'id': '195', 'type': 'subscript', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'metrics'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '202', 'type': 'dictionary', 'children': ['203']},{'id': '203', 'type': 'pair', 'children': ['204', '205']},{'id': '204', 'type': 'string', 'children': [], 'value': "'language'"},{'id': '205', 'type': 'string', 'children': [], 'value': "'Total'"},{'id': '206', 'type': 'for_statement', 'children': ['207', '208', '209']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '209', 'type': 'block', 'children': ['210']},{'id': '210', 'type': 'for_statement', 'children': ['211', '212', '215']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '212', 'type': 'subscript', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '215', 'type': 'block', 'children': ['216', '222', '233']},{'id': '216', 'type': 'if_statement', 'children': ['217', '220']},{'id': '217', 'type': 'comparison_operator', 'children': ['218', '219'], 'value': '=='},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '219', 'type': 'string', 'children': [], 'value': "'language'"},{'id': '220', 'type': 'block', 'children': ['221']},{'id': '221', 'type': 'continue_statement', 'children': []},{'id': '222', 'type': 'if_statement', 'children': ['223', '226']},{'id': '223', 'type': 'comparison_operator', 'children': ['224', '225'], 'value': 'not'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '226', 'type': 'block', 'children': ['227']},{'id': '227', 'type': 'expression_statement', 'children': ['228']},{'id': '228', 'type': 'assignment', 'children': ['229', '232']},{'id': '229', 'type': 'subscript', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '232', 'type': 'integer', 'children': [], 'value': '0'},{'id': '233', 'type': 'expression_statement', 'children': ['234']},{'id': '234', 'type': 'augmented_assignment', 'children': ['235', '238'], 'value': '+='},{'id': '235', 'type': 'subscript', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '238', 'type': 'subscript', 'children': ['239', '242']},{'id': '239', 'type': 'subscript', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '243', 'type': 'expression_statement', 'children': ['244']},{'id': '244', 'type': 'call', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '246', 'type': 'argument_list', 'children': ['247']},{'id': '247', 'type': 'string', 'children': [], 'value': "'Metrics Summary:'"},{'id': '248', 'type': 'expression_statement', 'children': ['249']},{'id': '249', 'type': 'call', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'display_header'},{'id': '251', 'type': 'argument_list', 'children': ['252', '253', '254']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '253', 'type': 'string', 'children': [], 'value': "'Files'"},{'id': '254', 'type': 'string', 'children': [], 'value': "''"},{'id': '255', 'type': 'expression_statement', 'children': ['256']},{'id': '256', 'type': 'call', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'display_separator'},{'id': '258', 'type': 'argument_list', 'children': ['259', '260', '263']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '260', 'type': 'binary_operator', 'children': ['261', '262'], 'value': '*'},{'id': '261', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '262', 'type': 'integer', 'children': [], 'value': '5'},{'id': '263', 'type': 'string', 'children': [], 'value': "''"},{'id': '264', 'type': 'for_statement', 'children': ['265', '266', '279']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '266', 'type': 'call', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '268', 'type': 'argument_list', 'children': ['269', '274']},{'id': '269', 'type': 'call', 'children': ['270', '273']},{'id': '270', 'type': 'attribute', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '273', 'type': 'argument_list', 'children': []},{'id': '274', 'type': 'keyword_argument', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '276', 'type': 'attribute', 'children': ['277', '278']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '279', 'type': 'block', 'children': ['280']},{'id': '280', 'type': 'expression_statement', 'children': ['281']},{'id': '281', 'type': 'call', 'children': ['282', '283']},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'display_metrics'},{'id': '283', 'type': 'argument_list', 'children': ['284', '285', '292', '293']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '285', 'type': 'binary_operator', 'children': ['286', '287'], 'value': '%'},{'id': '286', 'type': 'string', 'children': [], 'value': "'%5d'"},{'id': '287', 'type': 'subscript', 'children': ['288', '291']},{'id': '288', 'type': 'subscript', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '291', 'type': 'string', 'children': [], 'value': "'file_count'"},{'id': '292', 'type': 'string', 'children': [], 'value': "''"},{'id': '293', 'type': 'subscript', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'summary'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '296', 'type': 'expression_statement', 'children': ['297']},{'id': '297', 'type': 'call', 'children': ['298', '299']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'display_separator'},{'id': '299', 'type': 'argument_list', 'children': ['300', '301', '304']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '301', 'type': 'binary_operator', 'children': ['302', '303'], 'value': '*'},{'id': '302', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '303', 'type': 'integer', 'children': [], 'value': '5'},{'id': '304', 'type': 'string', 'children': [], 'value': "''"},{'id': '305', 'type': 'expression_statement', 'children': ['306']},{'id': '306', 'type': 'call', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'display_metrics'},{'id': '308', 'type': 'argument_list', 'children': ['309', '310', '315', '316']},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'processors'},{'id': '310', 'type': 'binary_operator', 'children': ['311', '312'], 'value': '%'},{'id': '311', 'type': 'string', 'children': [], 'value': "'%5d'"},{'id': '312', 'type': 'subscript', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '314', 'type': 'string', 'children': [], 'value': "'file_count'"},{'id': '315', 'type': 'string', 'children': [], 'value': "''"},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'total'} | def summary(processors, metrics, context):
def display_header(processors, before='', after=''):
print(before, end=' ')
for processor in processors:
processor.display_header()
print(after)
def display_separator(processors, before='', after=''):
print(before, end=' ')
for processor in processors:
processor.display_separator()
print(after)
def display_metrics(processors, before='', after='', metrics=[]):
print(before, end=' ')
for processor in processors:
processor.display_metrics(metrics)
print(after)
summary = {}
for m in metrics:
lang = metrics[m]['language']
has_key = lang in summary
if not has_key:
summary[lang] = {'file_count': 0, 'language': lang}
summary[lang]['file_count'] += 1
for i in metrics[m]:
if i not in ['sloc', 'comments', 'mccabe']:
continue
if not has_key:
summary[lang][i] = 0
summary[lang][i] += metrics[m][i]
total = {'language': 'Total'}
for m in summary:
for i in summary[m]:
if i == 'language':
continue
if i not in total:
total[i] = 0
total[i] += summary[m][i]
print('Metrics Summary:')
display_header(processors, 'Files', '')
display_separator(processors, '-'*5, '')
for k in sorted(summary.keys(), key=str.lower):
display_metrics(processors, '%5d' %
summary[k]['file_count'], '', summary[k])
display_separator(processors, '-'*5, '')
display_metrics(processors, '%5d' % total['file_count'],
'', total) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'run_experiment'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'experiment'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'roleouts'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'episodes'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'in_cloud'},{'id': '9', 'type': 'False', 'children': []},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'dynProfile'},{'id': '12', 'type': 'None', 'children': []},{'id': '13', 'type': 'block', 'children': ['14', '396', '441']},{'id': '14', 'type': 'function_definition', 'children': ['15', '16', '17']},{'id': '15', 'type': 'function_name', 'children': [], 'value': 'run'},{'id': '16', 'type': 'parameters', 'children': []},{'id': '17', 'type': 'block', 'children': ['18', '42', '51', '59', '68', '77', '86', '93', '391']},{'id': '18', 'type': 'if_statement', 'children': ['19', '22', '32']},{'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': 'is'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'dynProfile'},{'id': '21', 'type': 'None', 'children': []},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'maxsteps'},{'id': '26', 'type': 'call', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'experiment'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'profile'},{'id': '32', 'type': 'else_clause', 'children': ['33']},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'maxsteps'},{'id': '37', 'type': 'subscript', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'dynProfile'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '41', 'type': 'integer', 'children': [], 'value': '1'},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'na'},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'experiment'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'agents'},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'ni'},{'id': '54', 'type': 'binary_operator', 'children': ['55', '58'], 'value': '*'},{'id': '55', 'type': 'binary_operator', 'children': ['56', '57'], 'value': '*'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'roleouts'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'episodes'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'maxsteps'},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'all_action'},{'id': '62', 'type': 'call', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'tuple', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'na'},{'id': '67', 'type': 'integer', 'children': [], 'value': '0'},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'all_reward'},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'tuple', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'na'},{'id': '76', 'type': 'integer', 'children': [], 'value': '0'},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'epsilon'},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'tuple', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'na'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'ni'},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'vmarkup'},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'vectorize'},{'id': '91', 'type': 'argument_list', 'children': 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'job_id'},{'id': '405', 'type': 'call', 'children': ['406', '409']},{'id': '406', 'type': 'attribute', 'children': ['407', '408']},{'id': '407', 'type': 'identifier', 'children': [], 'value': 'cloud'},{'id': '408', 'type': 'identifier', 'children': [], 'value': 'call'},{'id': '409', 'type': 'argument_list', 'children': ['410', '411']},{'id': '410', 'type': 'identifier', 'children': [], 'value': 'run'},{'id': '411', 'type': 'keyword_argument', 'children': ['412', '413']},{'id': '412', 'type': 'identifier', 'children': [], 'value': '_high_cpu'},{'id': '413', 'type': 'False', 'children': []},{'id': '414', 'type': 'expression_statement', 'children': ['415']},{'id': '415', 'type': 'assignment', 'children': ['416', '417']},{'id': '416', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '417', 'type': 'call', 'children': ['418', '421']},{'id': '418', 'type': 'attribute', 'children': ['419', '420']},{'id': '419', 'type': 'identifier', 'children': [], 'value': 'cloud'},{'id': '420', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '421', 'type': 'argument_list', 'children': ['422']},{'id': '422', 'type': 'identifier', 'children': [], 'value': 'job_id'},{'id': '423', 'type': 'expression_statement', 'children': ['424']},{'id': '424', 'type': 'assignment', 'children': ['425', '429']},{'id': '425', 'type': 'pattern_list', 'children': ['426', '427', '428']},{'id': '426', 'type': 'identifier', 'children': [], 'value': 'all_action'},{'id': '427', 'type': 'identifier', 'children': [], 'value': 'all_reward'},{'id': '428', 'type': 'identifier', 'children': [], 'value': 'epsilon'},{'id': '429', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '430', 'type': 'else_clause', 'children': ['431']},{'id': '431', 'type': 'block', 'children': ['432']},{'id': '432', 'type': 'expression_statement', 'children': ['433']},{'id': '433', 'type': 'assignment', 'children': ['434', '438']},{'id': '434', 'type': 'pattern_list', 'children': ['435', '436', '437']},{'id': '435', 'type': 'identifier', 'children': [], 'value': 'all_action'},{'id': '436', 'type': 'identifier', 'children': [], 'value': 'all_reward'},{'id': '437', 'type': 'identifier', 'children': [], 'value': 'epsilon'},{'id': '438', 'type': 'call', 'children': ['439', '440']},{'id': '439', 'type': 'identifier', 'children': [], 'value': 'run'},{'id': '440', 'type': 'argument_list', 'children': []},{'id': '441', 'type': 'return_statement', 'children': ['442']},{'id': '442', 'type': 'expression_list', 'children': ['443', '444', '445']},{'id': '443', 'type': 'identifier', 'children': [], 'value': 'all_action'},{'id': '444', 'type': 'identifier', 'children': [], 'value': 'all_reward'},{'id': '445', 'type': 'identifier', 'children': [], 'value': 'epsilon'} | def run_experiment(experiment, roleouts, episodes, in_cloud=False,
dynProfile=None):
def run():
if dynProfile is None:
maxsteps = len(experiment.profile)
else:
maxsteps = dynProfile.shape[1]
na = len(experiment.agents)
ni = roleouts * episodes * maxsteps
all_action = zeros((na, 0))
all_reward = zeros((na, 0))
epsilon = zeros((na, ni))
vmarkup = vectorize(get_markup)
for roleout in range(roleouts):
if dynProfile is not None:
i = roleout * episodes
experiment.profile = dynProfile[i:i + episodes, :]
experiment.doEpisodes(episodes)
nei = episodes * maxsteps
epi_action = zeros((0, nei))
epi_reward = zeros((0, nei))
for i, (task, agent) in \
enumerate(zip(experiment.tasks, experiment.agents)):
action = copy(agent.history["action"])
reward = copy(agent.history["reward"])
for j in range(nei):
if isinstance(agent.learner, DirectSearchLearner):
action[j, :] = task.denormalize(action[j, :])
k = nei * roleout
epsilon[i, k:k + nei] = agent.learner.explorer.sigma[0]
elif isinstance(agent.learner, ValueBasedLearner):
action[j, :] = vmarkup(action[j, :], task)
k = nei * roleout
epsilon[i, k:k + nei] = agent.learner.explorer.epsilon
else:
action = vmarkup(action, task)
epi_action = c_[epi_action.T, action[:, 0].flatten()].T
epi_reward = c_[epi_reward.T, reward.flatten()].T
if hasattr(agent, "module"):
print "PARAMS:", agent.module.params
agent.learn()
agent.reset()
all_action = c_[all_action, epi_action]
all_reward = c_[all_reward, epi_reward]
return all_action, all_reward, epsilon
if in_cloud:
import cloud
job_id = cloud.call(run, _high_cpu=False)
result = cloud.result(job_id)
all_action, all_reward, epsilon = result
else:
all_action, all_reward, epsilon = run()
return all_action, all_reward, epsilon |
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'value': 'POLYNOMIAL'},{'id': '162', 'type': 'block', 'children': ['163']},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'assignment', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '166', 'type': 'call', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'polyval'},{'id': '168', 'type': 'argument_list', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'p_cost'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '171', 'type': 'else_clause', 'children': ['172']},{'id': '172', 'type': 'block', 'children': ['173']},{'id': '173', 'type': 'raise_statement', 'children': ['174']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '175', 'type': 'if_statement', 'children': ['176', '179', '183']},{'id': '176', 'type': 'attribute', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'is_load'},{'id': '179', 'type': 'block', 'children': ['180']},{'id': '180', 'type': 'return_statement', 'children': ['181']},{'id': '181', 'type': 'unary_operator', 'children': ['182'], 'value': '-'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '183', 'type': 'else_clause', 'children': ['184']},{'id': '184', 'type': 'block', 'children': ['185']},{'id': '185', 'type': 'return_statement', 'children': ['186']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'result'} | def total_cost(self, p=None, p_cost=None, pcost_model=None):
p = self.p if p is None else p
p_cost = self.p_cost if p_cost is None else p_cost
pcost_model = self.pcost_model if pcost_model is None else pcost_model
p = 0.0 if not self.online else p
if pcost_model == PW_LINEAR:
n_segments = len(p_cost) - 1
for i in range(n_segments):
x1, y1 = p_cost[i]
x2, y2 = p_cost[i + 1]
m = (y2 - y1) / (x2 - x1)
c = y1 - m * x1
if x1 <= p <= x2:
result = m*p + c
break
else:
logger.error("Value [%f] outside pwl cost curve [%s]." %
(p, p_cost[-1][0]))
result = m*p + c
elif pcost_model == POLYNOMIAL:
result = polyval(p_cost, p)
else:
raise ValueError
if self.is_load:
return -result
else:
return result |
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'195', 'type': 'not_operator', 'children': ['196']},{'id': '196', 'type': 'call', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '198', 'type': 'argument_list', 'children': ['199']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'p_offers'},{'id': '200', 'type': 'not_operator', 'children': ['201']},{'id': '201', 'type': 'call', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '203', 'type': 'argument_list', 'children': ['204']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'q_offers'},{'id': '205', 'type': 'block', 'children': ['206', '217']},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'call', 'children': ['208', '211']},{'id': '208', 'type': 'attribute', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '211', 'type': 'argument_list', 'children': ['212']},{'id': '212', 'type': 'binary_operator', 'children': ['213', '214'], 'value': '%'},{'id': '213', 'type': 'string', 'children': [], 'value': '"No valid offers for generator [%s], shutting down."'},{'id': '214', 'type': 'attribute', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'assignment', 'children': ['219', '222']},{'id': '219', 'type': 'attribute', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'online'},{'id': '222', 'type': 'False', 'children': []},{'id': '223', 'type': 'expression_statement', 'children': ['224']},{'id': '224', 'type': 'call', 'children': ['225', '228']},{'id': '225', 'type': 'attribute', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '227', 'type': 'identifier', 'children': [], 'value': '_adjust_limits'},{'id': '228', 'type': 'argument_list', 'children': []} | def offers_to_pwl(self, offers):
assert not self.is_load
g_offers = [offer for offer in offers if offer.generator == self]
gt_zero = [offr for offr in g_offers if round(offr.quantity, 4) > 0.0]
valid = [offer for offer in gt_zero if not offer.withheld]
p_offers = [v for v in valid if not v.reactive]
q_offers = [v for v in valid if v.reactive]
if p_offers:
self.p_cost = self._offbids_to_points(p_offers)
self.pcost_model = PW_LINEAR
self.online = True
else:
self.p_cost = [(0.0, 0.0), (self.p_max, 0.0)]
self.pcost_model = PW_LINEAR
if q_offers:
self.p_min = 0.0
self.p_max = 0.0
self.online = True
else:
self.online = False
if q_offers:
self.q_cost = self._offbids_to_points(q_offers)
self.qcost_model = PW_LINEAR
else:
self.q_cost = None
self.qcost_model = PW_LINEAR
if not len(p_offers) and not len(q_offers):
logger.info("No valid offers for generator [%s], shutting down." %
self.name)
self.online = False
self._adjust_limits() |
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'194', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'q_max'},{'id': '196', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '197', 'type': 'expression_statement', 'children': ['198']},{'id': '198', 'type': 'assignment', 'children': ['199', '202']},{'id': '199', 'type': 'attribute', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'qcost_model'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'PW_LINEAR'},{'id': '203', 'type': 'expression_statement', 'children': ['204']},{'id': '204', 'type': 'call', 'children': ['205', '208']},{'id': '205', 'type': 'attribute', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '207', 'type': 'identifier', 'children': [], 'value': '_adjust_limits'},{'id': '208', 'type': 'argument_list', 'children': []} | def bids_to_pwl(self, bids):
assert self.is_load
vl_bids = [bid for bid in bids if bid.vLoad == self]
gt_zero = [bid for bid in vl_bids if round(bid.quantity, 4) > 0.0]
valid_bids = [bid for bid in gt_zero if not bid.withheld]
p_bids = [v for v in valid_bids if not v.reactive]
q_bids = [v for v in valid_bids if v.reactive]
if p_bids:
self.p_cost = self._offbids_to_points(p_bids, True)
self.pcost_model = PW_LINEAR
self.online = True
else:
self.p_cost = [(0.0, 0.0), (self.p_max, 0.0)]
self.pcost_model = PW_LINEAR
logger.info("No valid active power bids for dispatchable load "
"[%s], shutting down." % self.name)
self.online = False
if q_bids:
self.q_cost = self._offbids_to_points(q_bids, True)
self.qcost_model = PW_LINEAR
self.online = True
else:
self.q_cost = [(self.q_min, 0.0), (0.0, 0.0), (self.q_max, 0.0)]
self.qcost_model = PW_LINEAR
self._adjust_limits() |
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'type': 'block', 'children': ['136']},{'id': '136', 'type': 'if_statement', 'children': ['137', '141']},{'id': '137', 'type': 'comparison_operator', 'children': ['138', '139'], 'value': 'not'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'last_token'},{'id': '139', 'type': 'list', 'children': ['140'], 'value': "['\\\\']"},{'id': '140', 'type': 'string', 'children': [], 'value': "'\\\\'"},{'id': '141', 'type': 'block', 'children': ['142']},{'id': '142', 'type': 'expression_statement', 'children': ['143']},{'id': '143', 'type': 'assignment', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'key_token'},{'id': '145', 'type': 'True', 'children': []},{'id': '146', 'type': 'elif_clause', 'children': ['147', '151']},{'id': '147', 'type': 'comparison_operator', 'children': ['148', '149'], 'value': 'in'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '149', 'type': 'list', 'children': ['150'], 'value': "['\\\\']"},{'id': '150', 'type': 'string', 'children': [], 'value': "'\\\\'"},{'id': '151', 'type': 'block', 'children': ['152']},{'id': '152', 'type': 'pass_statement', 'children': []},{'id': '153', 'type': 'elif_clause', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'key_token'},{'id': '155', 'type': 'block', 'children': ['156', '160']},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'assignment', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '160', 'type': 'expression_statement', 'children': ['161']},{'id': '161', 'type': 'assignment', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'key_token'},{'id': '163', 'type': 'False', 'children': []},{'id': '164', 'type': 'else_clause', 'children': ['165']},{'id': '165', 'type': 'block', 'children': ['166']},{'id': '166', 'type': 'if_statement', 'children': ['167', '170', '188', '227']},{'id': '167', 'type': 'comparison_operator', 'children': ['168', '169'], 'value': '=='},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '169', 'type': 'string', 'children': [], 'value': '"+="'},{'id': '170', 'type': 'block', 'children': ['171']},{'id': '171', 'type': 'if_statement', 'children': ['172', '179']},{'id': '172', 'type': 'not_operator', 'children': ['173']},{'id': '173', 'type': 'call', 'children': ['174', '177']},{'id': '174', 'type': 'attribute', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'has_key'},{'id': '177', 'type': 'argument_list', 'children': ['178']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '179', 'type': 'block', 'children': ['180']},{'id': '180', 'type': 'expression_statement', 'children': ['181']},{'id': '181', 'type': 'assignment', 'children': ['182', '185']},{'id': '182', 'type': 'subscript', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '185', 'type': 'call', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '187', 'type': 'argument_list', 'children': []},{'id': '188', 'type': 'elif_clause', 'children': ['189', '192']},{'id': '189', 'type': 'comparison_operator', 'children': ['190', '191'], 'value': '=='},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '191', 'type': 'string', 'children': [], 'value': '"="'},{'id': '192', 'type': 'block', 'children': ['193']},{'id': '193', 'type': 'if_statement', 'children': ['194', '204', '217']},{'id': '194', 'type': 'boolean_operator', 'children': ['195', '198'], 'value': 'and'},{'id': '195', 'type': 'comparison_operator', 'children': ['196', '197'], 'value': '=='},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '197', 'type': 'string', 'children': [], 'value': '"TAGFILES"'},{'id': '198', 'type': 'call', 'children': ['199', '202']},{'id': '199', 'type': 'attribute', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'has_key'},{'id': '202', 'type': 'argument_list', 'children': ['203']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '204', 'type': 'block', 'children': ['205', '213']},{'id': '205', 'type': 'expression_statement', 'children': ['206']},{'id': '206', 'type': 'call', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'append_data'},{'id': '208', 'type': 'argument_list', 'children': ['209', '210', '211', '212']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '211', 'type': 'False', 'children': []},{'id': '212', 'type': 'string', 'children': [], 'value': '"="'},{'id': '213', 'type': 'expression_statement', 'children': ['214']},{'id': '214', 'type': 'assignment', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'new_data'},{'id': '216', 'type': 'False', 'children': []},{'id': '217', 'type': 'else_clause', 'children': ['218']},{'id': '218', 'type': 'block', 'children': ['219']},{'id': '219', 'type': 'expression_statement', 'children': ['220']},{'id': '220', 'type': 'assignment', 'children': ['221', '224']},{'id': '221', 'type': 'subscript', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '224', 'type': 'call', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '226', 'type': 'argument_list', 'children': []},{'id': '227', 'type': 'else_clause', 'children': ['228']},{'id': '228', 'type': 'block', 'children': ['229', '237']},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'call', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'append_data'},{'id': '232', 'type': 'argument_list', 'children': ['233', '234', '235', '236']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'new_data'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '237', 'type': 'expression_statement', 'children': ['238']},{'id': '238', 'type': 'assignment', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'new_data'},{'id': '240', 'type': 'True', 'children': []},{'id': '241', 'type': 'expression_statement', 'children': ['242']},{'id': '242', 'type': 'assignment', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'last_token'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '245', 'type': 'expression_statement', 'children': ['246']},{'id': '246', 'type': 'assignment', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '248', 'type': 'call', 'children': ['249', '252']},{'id': '249', 'type': 'attribute', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'lex'},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'get_token'},{'id': '252', 'type': 'argument_list', 'children': []},{'id': '253', 'type': 'if_statement', 'children': ['254', '261']},{'id': '254', 'type': 'boolean_operator', 'children': ['255', '258'], 'value': 'and'},{'id': '255', 'type': 'comparison_operator', 'children': ['256', '257'], 'value': '=='},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'last_token'},{'id': '257', 'type': 'string', 'children': [], 'value': "'\\\\'"},{'id': '258', 'type': 'comparison_operator', 'children': ['259', '260'], 'value': '!='},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '260', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '261', 'type': 'block', 'children': ['262', '266']},{'id': '262', 'type': 'expression_statement', 'children': ['263']},{'id': '263', 'type': 'assignment', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'new_data'},{'id': '265', 'type': 'False', 'children': []},{'id': '266', 'type': 'expression_statement', 'children': ['267']},{'id': '267', 'type': 'call', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'append_data'},{'id': '269', 'type': 'argument_list', 'children': ['270', '271', '272', '273']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'new_data'},{'id': '273', 'type': 'string', 'children': [], 'value': "'\\\\'"},{'id': '274', 'type': 'for_statement', 'children': ['275', '278', '283']},{'id': '275', 'type': 'tuple_pattern', 'children': ['276', '277']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '278', 'type': 'call', 'children': ['279', '282']},{'id': '279', 'type': 'attribute', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '282', 'type': 'argument_list', 'children': []},{'id': '283', 'type': 'block', 'children': ['284', '299', '309']},{'id': '284', 'type': 'if_statement', 'children': ['285', '291']},{'id': '285', 'type': 'comparison_operator', 'children': ['286', '290'], 'value': '=='},{'id': '286', 'type': 'call', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '288', 'type': 'argument_list', 'children': ['289']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '290', 'type': 'integer', 'children': [], 'value': '0'},{'id': '291', 'type': 'block', 'children': ['292']},{'id': '292', 'type': 'expression_statement', 'children': ['293']},{'id': '293', 'type': 'call', 'children': ['294', '297']},{'id': '294', 'type': 'attribute', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '297', 'type': 'argument_list', 'children': ['298']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '299', 'type': 'if_statement', 'children': ['300', '307']},{'id': '300', 'type': 'comparison_operator', 'children': ['301', '302'], 'value': 'in'},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '302', 'type': 'list', 'children': ['303', '304', '305', '306'], 'value': '["INPUT", "FILE_PATTERNS", "EXCLUDE_PATTERNS", "TAGFILES"]'},{'id': '303', 'type': 'string', 'children': [], 'value': '"INPUT"'},{'id': '304', 'type': 'string', 'children': [], 'value': '"FILE_PATTERNS"'},{'id': '305', 'type': 'string', 'children': [], 'value': '"EXCLUDE_PATTERNS"'},{'id': '306', 'type': 'string', 'children': [], 'value': '"TAGFILES"'},{'id': '307', 'type': 'block', 'children': ['308']},{'id': '308', 'type': 'continue_statement', 'children': []},{'id': '309', 'type': 'if_statement', 'children': ['310', '316']},{'id': '310', 'type': 'comparison_operator', 'children': ['311', '315'], 'value': '=='},{'id': '311', 'type': 'call', 'children': ['312', '313']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '313', 'type': 'argument_list', 'children': ['314']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '315', 'type': 'integer', 'children': [], 'value': '1'},{'id': '316', 'type': 'block', 'children': ['317']},{'id': '317', 'type': 'expression_statement', 'children': ['318']},{'id': '318', 'type': 'assignment', 'children': ['319', '322']},{'id': '319', 'type': 'subscript', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '322', 'type': 'subscript', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '324', 'type': 'integer', 'children': [], 'value': '0'},{'id': '325', 'type': 'return_statement', 'children': ['326']},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'data'} | def DoxyfileParse(file_contents):
data = {}
import shlex
lex = shlex.shlex(instream = file_contents, posix = True)
lex.wordchars += "*+./-:"
lex.whitespace = lex.whitespace.replace("\n", "")
lex.escape = ""
lineno = lex.lineno
token = lex.get_token()
key = token
last_token = ""
key_token = False
next_key = False
new_data = True
def append_data(data, key, new_data, token):
if new_data or len(data[key]) == 0:
data[key].append(token)
else:
data[key][-1] += token
while token:
if token in ['\n']:
if last_token not in ['\\']:
key_token = True
elif token in ['\\']:
pass
elif key_token:
key = token
key_token = False
else:
if token == "+=":
if not data.has_key(key):
data[key] = list()
elif token == "=":
if key == "TAGFILES" and data.has_key(key):
append_data( data, key, False, "=" )
new_data=False
else:
data[key] = list()
else:
append_data( data, key, new_data, token )
new_data = True
last_token = token
token = lex.get_token()
if last_token == '\\' and token != '\n':
new_data = False
append_data( data, key, new_data, '\\' )
for (k, v) in data.items():
if len(v) == 0:
data.pop(k)
if k in ["INPUT", "FILE_PATTERNS", "EXCLUDE_PATTERNS", "TAGFILES"]:
continue
if len(v) == 1:
data[k] = v[0]
return data |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'DoxySourceScan'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'env'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '7', 'type': 'block', 'children': ['8', '37', '42', '46', '57', '78', '88', '98', '112', '282', '333', '393', '398', '403', '408', '424']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'default_file_patterns'},{'id': '11', 'type': 'list', 'children': ['12', '13', '14', '15', '16', '17', '18', '19', '20', '21', '22', '23', '24', '25', '26', '27', '28', '29', '30', '31', '32', '33', '34', '35', '36'], 'value': "[\n '*.c', '*.cc', '*.cxx', '*.cpp', '*.c++', '*.java', '*.ii', '*.ixx',\n '*.ipp', '*.i++', '*.inl', '*.h', '*.hh ', '*.hxx', '*.hpp', '*.h++',\n '*.idl', '*.odl', '*.cs', '*.php', '*.php3', '*.inc', '*.m', '*.mm',\n '*.py',\n ]"},{'id': '12', 'type': 'string', 'children': [], 'value': "'*.c'"},{'id': '13', 'type': 'string', 'children': [], 'value': "'*.cc'"},{'id': '14', 'type': 'string', 'children': [], 'value': "'*.cxx'"},{'id': '15', 'type': 'string', 'children': [], 'value': "'*.cpp'"},{'id': '16', 'type': 'string', 'children': [], 'value': "'*.c++'"},{'id': '17', 'type': 'string', 'children': [], 'value': "'*.java'"},{'id': '18', 'type': 'string', 'children': [], 'value': "'*.ii'"},{'id': '19', 'type': 'string', 'children': [], 'value': "'*.ixx'"},{'id': '20', 'type': 'string', 'children': [], 'value': "'*.ipp'"},{'id': '21', 'type': 'string', 'children': [], 'value': "'*.i++'"},{'id': '22', 'type': 'string', 'children': [], 'value': "'*.inl'"},{'id': '23', 'type': 'string', 'children': [], 'value': "'*.h'"},{'id': '24', 'type': 'string', 'children': [], 'value': "'*.hh '"},{'id': '25', 'type': 'string', 'children': [], 'value': "'*.hxx'"},{'id': '26', 'type': 'string', 'children': [], 'value': "'*.hpp'"},{'id': '27', 'type': 'string', 'children': [], 'value': "'*.h++'"},{'id': '28', 'type': 'string', 'children': [], 'value': "'*.idl'"},{'id': '29', 'type': 'string', 'children': [], 'value': "'*.odl'"},{'id': '30', 'type': 'string', 'children': [], 'value': "'*.cs'"},{'id': '31', 'type': 'string', 'children': [], 'value': "'*.php'"},{'id': '32', 'type': 'string', 'children': [], 'value': "'*.php3'"},{'id': '33', 'type': 'string', 'children': [], 'value': "'*.inc'"},{'id': '34', 'type': 'string', 'children': [], 'value': "'*.m'"},{'id': '35', 'type': 'string', 'children': [], 'value': "'*.mm'"},{'id': '36', 'type': 'string', 'children': [], 'value': "'*.py'"},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'default_exclude_patterns'},{'id': '40', 'type': 'list', 'children': ['41'], 'value': "[\n '*~',\n ]"},{'id': '41', 'type': 'string', 'children': [], 'value': "'*~'"},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '45', 'type': 'list', 'children': [], 'value': '[]'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '49', 'type': 'call', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'DoxyfileParse'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'get_contents'},{'id': '56', 'type': 'argument_list', 'children': []},{'id': '57', 'type': 'if_statement', 'children': ['58', '67', '72']},{'id': '58', 'type': 'comparison_operator', 'children': ['59', '66'], 'value': '=='},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '63', 'type': 'argument_list', 'children': ['64', '65']},{'id': '64', 'type': 'string', 'children': [], 'value': '"RECURSIVE"'},{'id': '65', 'type': 'string', 'children': [], 'value': '"NO"'},{'id': '66', 'type': 'string', 'children': [], 'value': '"YES"'},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '71', 'type': 'True', 'children': []},{'id': '72', 'type': 'else_clause', 'children': ['73']},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '77', 'type': 'False', 'children': []},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'assignment', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'file_patterns'},{'id': '81', 'type': 'call', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '85', 'type': 'argument_list', 'children': ['86', '87']},{'id': '86', 'type': 'string', 'children': [], 'value': '"FILE_PATTERNS"'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'default_file_patterns'},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'assignment', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'exclude_patterns'},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '95', 'type': 'argument_list', 'children': ['96', '97']},{'id': '96', 'type': 'string', 'children': [], 'value': '"EXCLUDE_PATTERNS"'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'default_exclude_patterns'},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'conf_dir'},{'id': '101', 'type': 'call', 'children': ['102', '107']},{'id': '102', 'type': 'attribute', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'dirname'},{'id': '107', 'type': 'argument_list', 'children': ['108']},{'id': '108', 'type': 'call', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '110', 'type': 'argument_list', 'children': ['111']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '112', 'type': 'for_statement', 'children': ['113', '114', '121']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '118', 'type': 'argument_list', 'children': ['119', '120']},{'id': '119', 'type': 'string', 'children': [], 'value': '"INPUT"'},{'id': '120', 'type': 'list', 'children': [], 'value': '[]'},{'id': '121', 'type': 'block', 'children': ['122', '145']},{'id': '122', 'type': 'if_statement', 'children': ['123', '132']},{'id': '123', 'type': 'not_operator', 'children': ['124']},{'id': '124', 'type': 'call', 'children': ['125', '130']},{'id': '125', 'type': 'attribute', 'children': ['126', '129']},{'id': '126', 'type': 'attribute', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'isabs'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '132', 'type': 'block', 'children': ['133']},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '136', 'type': 'call', 'children': ['137', '142']},{'id': '137', 'type': 'attribute', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '142', 'type': 'argument_list', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'conf_dir'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '145', 'type': 'if_statement', 'children': ['146', '154', '162']},{'id': '146', 'type': 'call', 'children': ['147', '152']},{'id': '147', 'type': 'attribute', 'children': ['148', '151']},{'id': '148', 'type': 'attribute', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'isfile'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '154', 'type': 'block', 'children': ['155']},{'id': '155', 'type': 'expression_statement', 'children': ['156']},{'id': '156', 'type': 'call', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '160', 'type': 'argument_list', 'children': ['161']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '162', 'type': 'elif_clause', 'children': ['163', '171']},{'id': '163', 'type': 'call', 'children': ['164', '169']},{'id': '164', 'type': 'attribute', 'children': ['165', '168']},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'isdir'},{'id': '169', 'type': 'argument_list', 'children': ['170']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '171', 'type': 'block', 'children': ['172']},{'id': '172', 'type': 'if_statement', 'children': ['173', '174', '257']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '174', 'type': 'block', 'children': ['175']},{'id': '175', 'type': 'for_statement', 'children': ['176', '180', '186']},{'id': '176', 'type': 'pattern_list', 'children': ['177', '178', '179']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'dirs'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '180', 'type': 'call', 'children': ['181', '184']},{'id': '181', 'type': 'attribute', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'walk'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '186', 'type': 'block', 'children': ['187']},{'id': '187', 'type': 'for_statement', 'children': ['188', '189', '190']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '190', 'type': 'block', 'children': ['191', '203', '225', '244']},{'id': '191', 'type': 'expression_statement', 'children': ['192']},{'id': '192', 'type': 'assignment', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '194', 'type': 'call', 'children': ['195', '200']},{'id': '195', 'type': 'attribute', 'children': ['196', '199']},{'id': '196', 'type': 'attribute', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '200', 'type': 'argument_list', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '203', 'type': 'expression_statement', 'children': ['204']},{'id': '204', 'type': 'assignment', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'pattern_check'},{'id': '206', 'type': 'call', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'reduce'},{'id': '208', 'type': 'argument_list', 'children': ['209', '223', '224']},{'id': '209', 'type': 'lambda', 'children': ['210', '213']},{'id': '210', 'type': 'lambda_parameters', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '213', 'type': 'boolean_operator', 'children': ['214', '215'], 'value': 'or'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '215', 'type': 'call', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '217', 'type': 'argument_list', 'children': ['218']},{'id': '218', 'type': 'call', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'fnmatch'},{'id': '220', 'type': 'argument_list', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'file_patterns'},{'id': '224', 'type': 'False', 'children': []},{'id': '225', 'type': 'expression_statement', 'children': ['226']},{'id': '226', 'type': 'assignment', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'exclude_check'},{'id': '228', 'type': 'call', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'reduce'},{'id': '230', 'type': 'argument_list', 'children': ['231', '242', '243']},{'id': '231', 'type': 'lambda', 'children': ['232', '235']},{'id': '232', 'type': 'lambda_parameters', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '235', 'type': 'boolean_operator', 'children': ['236', '237'], 'value': 'and'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '237', 'type': 'call', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'fnmatch'},{'id': '239', 'type': 'argument_list', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'exclude_patterns'},{'id': '243', 'type': 'True', 'children': []},{'id': '244', 'type': 'if_statement', 'children': ['245', '249']},{'id': '245', 'type': 'boolean_operator', 'children': ['246', '247'], 'value': 'and'},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'pattern_check'},{'id': '247', 'type': 'not_operator', 'children': ['248']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'exclude_check'},{'id': '249', 'type': 'block', 'children': ['250']},{'id': '250', 'type': 'expression_statement', 'children': ['251']},{'id': '251', 'type': 'call', 'children': ['252', '255']},{'id': '252', 'type': 'attribute', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '255', 'type': 'argument_list', 'children': ['256']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '257', 'type': 'else_clause', 'children': ['258']},{'id': '258', 'type': 'block', 'children': ['259']},{'id': '259', 'type': 'for_statement', 'children': ['260', '261', '262']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'file_patterns'},{'id': '262', 'type': 'block', 'children': ['263']},{'id': '263', 'type': 'expression_statement', 'children': ['264']},{'id': '264', 'type': 'call', 'children': ['265', '268']},{'id': '265', 'type': 'attribute', 'children': ['266', '267']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '268', 'type': 'argument_list', 'children': ['269']},{'id': '269', 'type': 'call', 'children': ['270', '273']},{'id': '270', 'type': 'attribute', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'glob'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'glob'},{'id': '273', 'type': 'argument_list', 'children': ['274']},{'id': '274', 'type': 'call', 'children': ['275', '278']},{'id': '275', 'type': 'attribute', 'children': ['276', '277']},{'id': '276', 'type': 'string', 'children': [], 'value': '"/"'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '278', 'type': 'argument_list', 'children': ['279']},{'id': '279', 'type': 'list', 'children': ['280', '281'], 'value': '[node, pattern]'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '282', 'type': 'for_statement', 'children': ['283', '284', '291']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '284', 'type': 'call', 'children': ['285', '288']},{'id': '285', 'type': 'attribute', 'children': ['286', '287']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '288', 'type': 'argument_list', 'children': ['289', '290']},{'id': '289', 'type': 'string', 'children': [], 'value': '"TAGFILES"'},{'id': '290', 'type': 'list', 'children': [], 'value': '[]'},{'id': '291', 'type': 'block', 'children': ['292', '303', '326']},{'id': '292', 'type': 'expression_statement', 'children': ['293']},{'id': '293', 'type': 'assignment', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '295', 'type': 'subscript', 'children': ['296', '302']},{'id': '296', 'type': 'call', 'children': ['297', '300']},{'id': '297', 'type': 'attribute', 'children': ['298', '299']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '300', 'type': 'argument_list', 'children': ['301']},{'id': '301', 'type': 'string', 'children': [], 'value': '"="'},{'id': '302', 'type': 'integer', 'children': [], 'value': '0'},{'id': '303', 'type': 'if_statement', 'children': ['304', '313']},{'id': '304', 'type': 'not_operator', 'children': ['305']},{'id': '305', 'type': 'call', 'children': ['306', '311']},{'id': '306', 'type': 'attribute', 'children': ['307', '310']},{'id': '307', 'type': 'attribute', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'isabs'},{'id': '311', 'type': 'argument_list', 'children': ['312']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '313', 'type': 'block', 'children': ['314']},{'id': '314', 'type': 'expression_statement', 'children': ['315']},{'id': '315', 'type': 'assignment', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '317', 'type': 'call', 'children': ['318', '323']},{'id': '318', 'type': 'attribute', 'children': ['319', '322']},{'id': '319', 'type': 'attribute', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '323', 'type': 'argument_list', 'children': ['324', '325']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'conf_dir'},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '326', 'type': 'expression_statement', 'children': ['327']},{'id': '327', 'type': 'call', 'children': ['328', '331']},{'id': '328', 'type': 'attribute', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '331', 'type': 'argument_list', 'children': ['332']},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '333', 'type': 'function_definition', 'children': ['334', '335', '337']},{'id': '334', 'type': 'function_name', 'children': [], 'value': 'append_additional_source'},{'id': '335', 'type': 'parameters', 'children': ['336']},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'option'},{'id': '337', 'type': 'block', 'children': ['338', '348']},{'id': '338', 'type': 'expression_statement', 'children': ['339']},{'id': '339', 'type': 'assignment', 'children': ['340', '341']},{'id': '340', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '341', 'type': 'call', 'children': ['342', '345']},{'id': '342', 'type': 'attribute', 'children': ['343', '344']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '344', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '345', 'type': 'argument_list', 'children': ['346', '347']},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'option'},{'id': '347', 'type': 'string', 'children': [], 'value': '""'},{'id': '348', 'type': 'if_statement', 'children': ['349', '352']},{'id': '349', 'type': 'comparison_operator', 'children': ['350', '351'], 'value': '!='},{'id': '350', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '351', 'type': 'string', 'children': [], 'value': '""'},{'id': '352', 'type': 'block', 'children': ['353', '376']},{'id': '353', 'type': 'if_statement', 'children': ['354', '363']},{'id': '354', 'type': 'not_operator', 'children': ['355']},{'id': '355', 'type': 'call', 'children': ['356', '361']},{'id': '356', 'type': 'attribute', 'children': ['357', '360']},{'id': '357', 'type': 'attribute', 'children': ['358', '359']},{'id': '358', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '359', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'isabs'},{'id': '361', 'type': 'argument_list', 'children': ['362']},{'id': '362', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '363', 'type': 'block', 'children': ['364']},{'id': '364', 'type': 'expression_statement', 'children': ['365']},{'id': '365', 'type': 'assignment', 'children': ['366', '367']},{'id': '366', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '367', 'type': 'call', 'children': ['368', '373']},{'id': '368', 'type': 'attribute', 'children': ['369', '372']},{'id': '369', 'type': 'attribute', 'children': ['370', '371']},{'id': '370', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '371', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '372', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '373', 'type': 'argument_list', 'children': ['374', '375']},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'conf_dir'},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '376', 'type': 'if_statement', 'children': ['377', '385']},{'id': '377', 'type': 'call', 'children': ['378', '383']},{'id': '378', 'type': 'attribute', 'children': ['379', '382']},{'id': '379', 'type': 'attribute', 'children': ['380', '381']},{'id': '380', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '381', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'isfile'},{'id': '383', 'type': 'argument_list', 'children': ['384']},{'id': '384', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '385', 'type': 'block', 'children': ['386']},{'id': '386', 'type': 'expression_statement', 'children': ['387']},{'id': '387', 'type': 'call', 'children': ['388', '391']},{'id': '388', 'type': 'attribute', 'children': ['389', '390']},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '390', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '391', 'type': 'argument_list', 'children': ['392']},{'id': '392', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '393', 'type': 'expression_statement', 'children': ['394']},{'id': '394', 'type': 'call', 'children': ['395', '396']},{'id': '395', 'type': 'identifier', 'children': [], 'value': 'append_additional_source'},{'id': '396', 'type': 'argument_list', 'children': ['397']},{'id': '397', 'type': 'string', 'children': [], 'value': '"HTML_STYLESHEET"'},{'id': '398', 'type': 'expression_statement', 'children': ['399']},{'id': '399', 'type': 'call', 'children': ['400', '401']},{'id': '400', 'type': 'identifier', 'children': [], 'value': 'append_additional_source'},{'id': '401', 'type': 'argument_list', 'children': ['402']},{'id': '402', 'type': 'string', 'children': [], 'value': '"HTML_HEADER"'},{'id': '403', 'type': 'expression_statement', 'children': ['404']},{'id': '404', 'type': 'call', 'children': ['405', '406']},{'id': '405', 'type': 'identifier', 'children': [], 'value': 'append_additional_source'},{'id': '406', 'type': 'argument_list', 'children': ['407']},{'id': '407', 'type': 'string', 'children': [], 'value': '"HTML_FOOTER"'},{'id': '408', 'type': 'expression_statement', 'children': ['409']},{'id': '409', 'type': 'assignment', 'children': ['410', '411']},{'id': '410', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '411', 'type': 'call', 'children': ['412', '413']},{'id': '412', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '413', 'type': 'argument_list', 'children': ['414', '423']},{'id': '414', 'type': 'lambda', 'children': ['415', '417']},{'id': '415', 'type': 'lambda_parameters', 'children': ['416']},{'id': '416', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '417', 'type': 'call', 'children': ['418', '421']},{'id': '418', 'type': 'attribute', 'children': ['419', '420']},{'id': '419', 'type': 'identifier', 'children': [], 'value': 'env'},{'id': '420', 'type': 'identifier', 'children': [], 'value': 'File'},{'id': '421', 'type': 'argument_list', 'children': ['422']},{'id': '422', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '423', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '424', 'type': 'return_statement', 'children': ['425']},{'id': '425', 'type': 'identifier', 'children': [], 'value': 'sources'} | def DoxySourceScan(node, env, path):
default_file_patterns = [
'*.c', '*.cc', '*.cxx', '*.cpp', '*.c++', '*.java', '*.ii', '*.ixx',
'*.ipp', '*.i++', '*.inl', '*.h', '*.hh ', '*.hxx', '*.hpp', '*.h++',
'*.idl', '*.odl', '*.cs', '*.php', '*.php3', '*.inc', '*.m', '*.mm',
'*.py',
]
default_exclude_patterns = [
'*~',
]
sources = []
data = DoxyfileParse(node.get_contents())
if data.get("RECURSIVE", "NO") == "YES":
recursive = True
else:
recursive = False
file_patterns = data.get("FILE_PATTERNS", default_file_patterns)
exclude_patterns = data.get("EXCLUDE_PATTERNS", default_exclude_patterns)
conf_dir = os.path.dirname(str(node))
for node in data.get("INPUT", []):
if not os.path.isabs(node):
node = os.path.join(conf_dir, node)
if os.path.isfile(node):
sources.append(node)
elif os.path.isdir(node):
if recursive:
for root, dirs, files in os.walk(node):
for f in files:
filename = os.path.join(root, f)
pattern_check = reduce(lambda x, y: x or bool(fnmatch(filename, y)), file_patterns, False)
exclude_check = reduce(lambda x, y: x and fnmatch(filename, y), exclude_patterns, True)
if pattern_check and not exclude_check:
sources.append(filename)
else:
for pattern in file_patterns:
sources.extend(glob.glob("/".join([node, pattern])))
for node in data.get("TAGFILES", []):
file = node.split("=")[0]
if not os.path.isabs(file):
file = os.path.join(conf_dir, file)
sources.append(file)
def append_additional_source(option):
file = data.get(option, "")
if file != "":
if not os.path.isabs(file):
file = os.path.join(conf_dir, file)
if os.path.isfile(file):
sources.append(file)
append_additional_source("HTML_STYLESHEET")
append_additional_source("HTML_HEADER")
append_additional_source("HTML_FOOTER")
sources = map( lambda path: env.File(path), sources )
return sources |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_quadratic_costs'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ipol'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'nxyz'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'base_mva'},{'id': '9', 'type': 'block', 'children': ['10', '17', '24', '38', '61', '89', '117', '126', '316']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'npol'},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'ipol'},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'rnpol'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'npol'},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'gpol'},{'id': '27', 'type': 'list_comprehension', 'children': ['28', '29', '32']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '29', 'type': 'for_in_clause', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '32', 'type': 'if_clause', 'children': ['33']},{'id': '33', 'type': 'comparison_operator', 'children': ['34', '37'], 'value': '=='},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'pcost_model'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'POLYNOMIAL'},{'id': '38', 'type': 'if_statement', 'children': ['39', '53']},{'id': '39', 'type': 'list_comprehension', 'children': ['40', '41', '44']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '41', 'type': 'for_in_clause', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'gpol'},{'id': '44', 'type': 'if_clause', 'children': ['45']},{'id': '45', 'type': 'comparison_operator', 'children': ['46', '52'], 'value': '>'},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'p_cost'},{'id': '52', 'type': 'integer', 'children': [], 'value': '3'},{'id': '53', 'type': 'block', 'children': ['54']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'call', 'children': ['56', '59']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'string', 'children': [], 'value': '"Order of polynomial cost greater than quadratic."'},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'iqdr'},{'id': '64', 'type': 'list_comprehension', 'children': ['65', '66', '74']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '66', 'type': 'for_in_clause', 'children': ['67', '70']},{'id': '67', 'type': 'pattern_list', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '74', 'type': 'if_clause', 'children': ['75']},{'id': '75', 'type': 'boolean_operator', 'children': ['76', '81'], 'value': 'and'},{'id': '76', 'type': 'comparison_operator', 'children': ['77', '80'], 'value': '=='},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'pcost_model'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'POLYNOMIAL'},{'id': '81', 'type': 'comparison_operator', 'children': ['82', '88'], 'value': '=='},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'p_cost'},{'id': '88', 'type': 'integer', 'children': [], 'value': '3'},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'assignment', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'ilin'},{'id': '92', 'type': 'list_comprehension', 'children': ['93', '94', '102']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '94', 'type': 'for_in_clause', 'children': ['95', '98']},{'id': '95', 'type': 'pattern_list', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '102', 'type': 'if_clause', 'children': ['103']},{'id': '103', 'type': 'boolean_operator', 'children': ['104', '109'], 'value': 'and'},{'id': '104', 'type': 'comparison_operator', 'children': ['105', '108'], 'value': '=='},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'pcost_model'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'POLYNOMIAL'},{'id': '109', 'type': 'comparison_operator', 'children': ['110', '116'], 'value': '=='},{'id': '110', 'type': 'call', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '112', 'type': 'argument_list', 'children': ['113']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'p_cost'},{'id': '116', 'type': 'integer', 'children': [], 'value': '2'},{'id': '117', 'type': 'expression_statement', 'children': ['118']},{'id': '118', 'type': 'assignment', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'polycf'},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 'tuple', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'npol'},{'id': '125', 'type': 'integer', 'children': [], 'value': '3'},{'id': '126', 'type': 'if_statement', 'children': ['127', '130', '292']},{'id': '127', 'type': 'comparison_operator', 'children': ['128', '129'], 'value': '>'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'npol'},{'id': '129', 'type': 'integer', 'children': [], 'value': '0'},{'id': '130', 'type': 'block', 'children': ['131', '159', '192', '206', '217', '241', '261', '269']},{'id': '131', 'type': 'if_statement', 'children': ['132', '138']},{'id': '132', 'type': 'comparison_operator', 'children': ['133', '137'], 'value': '>'},{'id': '133', 'type': 'call', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'iqdr'},{'id': '137', 'type': 'integer', 'children': [], 'value': '0'},{'id': '138', 'type': 'block', 'children': ['139']},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'assignment', 'children': ['141', '146']},{'id': '141', 'type': 'subscript', 'children': ['142', '143', '144']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'polycf'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'iqdr'},{'id': '144', 'type': 'slice', 'children': ['145']},{'id': '145', 'type': 'colon', 'children': []},{'id': '146', 'type': 'call', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '148', 'type': 'argument_list', 'children': ['149']},{'id': '149', 'type': 'list_comprehension', 'children': ['150', '156']},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'attribute', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'p_cost'},{'id': '156', 'type': 'for_in_clause', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '159', 'type': 'if_statement', 'children': ['160', '166']},{'id': '160', 'type': 'comparison_operator', 'children': ['161', '165'], 'value': '>'},{'id': '161', 'type': 'call', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '163', 'type': 'argument_list', 'children': ['164']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'ilin'},{'id': '165', 'type': 'integer', 'children': [], 'value': '0'},{'id': '166', 'type': 'block', 'children': ['167']},{'id': '167', 'type': 'expression_statement', 'children': ['168']},{'id': '168', 'type': 'assignment', 'children': ['169', '175']},{'id': '169', 'type': 'subscript', 'children': ['170', '171', '172']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'polycf'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'ilin'},{'id': '172', 'type': 'slice', 'children': ['173', '174']},{'id': '173', 'type': 'integer', 'children': [], 'value': '1'},{'id': '174', 'type': 'colon', 'children': []},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '177', 'type': 'argument_list', 'children': ['178']},{'id': '178', 'type': 'list_comprehension', 'children': ['179', '189']},{'id': '179', 'type': 'call', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '181', 'type': 'argument_list', 'children': ['182']},{'id': '182', 'type': 'subscript', 'children': ['183', '186']},{'id': '183', 'type': 'attribute', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'p_cost'},{'id': '186', 'type': 'slice', 'children': ['187', '188']},{'id': '187', 'type': 'colon', 'children': []},{'id': '188', 'type': 'integer', 'children': [], 'value': '2'},{'id': '189', 'type': 'for_in_clause', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '192', 'type': 'expression_statement', 'children': ['193']},{'id': '193', 'type': 'assignment', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'polycf'},{'id': '195', 'type': 'binary_operator', 'children': ['196', '197'], 'value': '*'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'polycf'},{'id': '197', 'type': 'call', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '199', 'type': 'argument_list', 'children': ['200']},{'id': '200', 'type': 'list', 'children': ['201', '204', '205'], 'value': '[base_mva**2, base_mva, 1]'},{'id': '201', 'type': 'binary_operator', 'children': ['202', '203'], 'value': '**'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'base_mva'},{'id': '203', 'type': 'integer', 'children': [], 'value': '2'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'base_mva'},{'id': '205', 'type': 'integer', 'children': [], 'value': '1'},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'assignment', 'children': ['208', '209']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'Pg'},{'id': '209', 'type': 'call', 'children': ['210', '215']},{'id': '210', 'type': 'attribute', 'children': ['211', '214']},{'id': '211', 'type': 'attribute', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'om'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'get_var'},{'id': '215', 'type': 'argument_list', 'children': ['216']},{'id': '216', 'type': 'string', 'children': [], 'value': '"Pg"'},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'assignment', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'Npol'},{'id': '220', 'type': 'call', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'csr_matrix'},{'id': '222', 'type': 'argument_list', 'children': ['223', '238']},{'id': '223', 'type': 'tuple', 'children': ['224', '228']},{'id': '224', 'type': 'call', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'ones'},{'id': '226', 'type': 'argument_list', 'children': ['227']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'npol'},{'id': '228', 'type': 'tuple', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'rnpol'},{'id': '230', 'type': 'binary_operator', 'children': ['231', '234'], 'value': '+'},{'id': '231', 'type': 'attribute', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'Pg'},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'i1'},{'id': '234', 'type': 'call', 'children': ['235', '236']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '236', 'type': 'argument_list', 'children': ['237']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'ipol'},{'id': '238', 'type': 'tuple', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'npol'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'nxyz'},{'id': '241', 'type': 'expression_statement', 'children': ['242']},{'id': '242', 'type': 'assignment', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'Hpol'},{'id': '244', 'type': 'call', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'csr_matrix'},{'id': '246', 'type': 'argument_list', 'children': ['247', '258']},{'id': '247', 'type': 'tuple', 'children': ['248', '255']},{'id': '248', 'type': 'binary_operator', 'children': ['249', '250'], 'value': '*'},{'id': '249', 'type': 'integer', 'children': [], 'value': '2'},{'id': '250', 'type': 'subscript', 'children': ['251', '252', '254']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'polycf'},{'id': '252', 'type': 'slice', 'children': ['253']},{'id': '253', 'type': 'colon', 'children': []},{'id': '254', 'type': 'integer', 'children': [], 'value': '0'},{'id': '255', 'type': 'tuple', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'rnpol'},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'rnpol'},{'id': '258', 'type': 'tuple', 'children': ['259', '260']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'npol'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'npol'},{'id': '261', 'type': 'expression_statement', 'children': ['262']},{'id': '262', 'type': 'assignment', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'Cpol'},{'id': '264', 'type': 'subscript', 'children': ['265', '266', '268']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'polycf'},{'id': '266', 'type': 'slice', 'children': ['267']},{'id': '267', 'type': 'colon', 'children': []},{'id': '268', 'type': 'integer', 'children': [], 'value': '1'},{'id': '269', 'type': 'expression_statement', 'children': ['270']},{'id': '270', 'type': 'assignment', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'fparm_pol'},{'id': '272', 'type': 'attribute', 'children': ['273', '291']},{'id': '273', 'type': '()', 'children': ['274']},{'id': '274', 'type': 'binary_operator', 'children': ['275', '279'], 'value': '*'},{'id': '275', 'type': 'call', 'children': ['276', '277']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'ones'},{'id': '277', 'type': 'argument_list', 'children': ['278']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'npol'},{'id': '279', 'type': 'call', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '281', 'type': 'argument_list', 'children': ['282']},{'id': '282', 'type': 'list', 'children': ['283', '285', '287', '289'], 'value': '[[1], [0], [0], [1]]'},{'id': '283', 'type': 'list', 'children': ['284'], 'value': '[1]'},{'id': '284', 'type': 'integer', 'children': [], 'value': '1'},{'id': '285', 'type': 'list', 'children': ['286'], 'value': '[0]'},{'id': '286', 'type': 'integer', 'children': [], 'value': '0'},{'id': '287', 'type': 'list', 'children': ['288'], 'value': '[0]'},{'id': '288', 'type': 'integer', 'children': [], 'value': '0'},{'id': '289', 'type': 'list', 'children': ['290'], 'value': '[1]'},{'id': '290', 'type': 'integer', 'children': [], 'value': '1'},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '292', 'type': 'else_clause', 'children': ['293']},{'id': '293', 'type': 'block', 'children': ['294', '300', '307']},{'id': '294', 'type': 'expression_statement', 'children': ['295']},{'id': '295', 'type': 'assignment', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'Npol'},{'id': '297', 'type': 'assignment', 'children': ['298', '299']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'Hpol'},{'id': '299', 'type': 'None', 'children': []},{'id': '300', 'type': 'expression_statement', 'children': ['301']},{'id': '301', 'type': 'assignment', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'Cpol'},{'id': '303', 'type': 'call', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '305', 'type': 'argument_list', 'children': ['306']},{'id': '306', 'type': 'list', 'children': [], 'value': '[]'},{'id': '307', 'type': 'expression_statement', 'children': ['308']},{'id': '308', 'type': 'assignment', 'children': ['309', '310']},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'fparm_pol'},{'id': '310', 'type': 'call', 'children': ['311', '312']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '312', 'type': 'argument_list', 'children': ['313']},{'id': '313', 'type': 'tuple', 'children': ['314', '315']},{'id': '314', 'type': 'integer', 'children': [], 'value': '0'},{'id': '315', 'type': 'integer', 'children': [], 'value': '4'},{'id': '316', 'type': 'return_statement', 'children': ['317']},{'id': '317', 'type': 'expression_list', 'children': ['318', '319', '320', '321', '322', '323']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'Npol'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'Hpol'},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'Cpol'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'fparm_pol'},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'polycf'},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'npol'} | def _quadratic_costs(self, generators, ipol, nxyz, base_mva):
npol = len(ipol)
rnpol = range(npol)
gpol = [g for g in generators if g.pcost_model == POLYNOMIAL]
if [g for g in gpol if len(g.p_cost) > 3]:
logger.error("Order of polynomial cost greater than quadratic.")
iqdr = [i for i, g in enumerate(generators)
if g.pcost_model == POLYNOMIAL and len(g.p_cost) == 3]
ilin = [i for i, g in enumerate(generators)
if g.pcost_model == POLYNOMIAL and len(g.p_cost) == 2]
polycf = zeros((npol, 3))
if npol > 0:
if len(iqdr) > 0:
polycf[iqdr, :] = array([list(g.p_cost)
for g in generators])
if len(ilin) > 0:
polycf[ilin, 1:] = array([list(g.p_cost[:2])
for g in generators])
polycf = polycf * array([base_mva**2, base_mva, 1])
Pg = self.om.get_var("Pg")
Npol = csr_matrix((ones(npol), (rnpol, Pg.i1 + array(ipol))),
(npol, nxyz))
Hpol = csr_matrix((2 * polycf[:, 0], (rnpol, rnpol)), (npol, npol))
Cpol = polycf[:, 1]
fparm_pol = (ones(npol) * array([[1], [0], [0], [1]])).T
else:
Npol = Hpol = None
Cpol = array([])
fparm_pol = zeros((0, 4))
return Npol, Hpol, Cpol, fparm_pol, polycf, npol |
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'55']},{'id': '46', 'type': 'pattern_list', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'gen'},{'id': '49', 'type': 'call', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'identifier', 'children': [], 'value': '_gn'},{'id': '55', 'type': 'block', 'children': ['56', '68']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'gen'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '61', 'type': 'binary_operator', 'children': ['62', '65'], 'value': '*'},{'id': '62', 'type': 'subscript', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'Pgen'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '67', 'type': 'identifier', 'children': [], 'value': '_base_mva'},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'gen'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '73', 'type': 'binary_operator', 'children': ['74', '77'], 'value': '*'},{'id': '74', 'type': 'subscript', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'Qgen'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '79', 'type': 'identifier', 'children': [], 'value': '_base_mva'},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'Sbus'},{'id': '83', 'type': 'call', 'children': ['84', '91']},{'id': '84', 'type': 'attribute', 'children': ['85', '90']},{'id': '85', 'type': 'attribute', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'om'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'case'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'getSbus'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': 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'children': [], 'value': 'self'},{'id': '123', 'type': 'identifier', 'children': [], 'value': '_Vm'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'i1'},{'id': '125', 'type': 'colon', 'children': []},{'id': '126', 'type': 'binary_operator', 'children': ['127', '132'], 'value': '+'},{'id': '127', 'type': 'attribute', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '130', 'type': 'identifier', 'children': [], 'value': '_Vm'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'iN'},{'id': '132', 'type': 'integer', 'children': [], 'value': '1'},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'V'},{'id': '136', 'type': 'binary_operator', 'children': ['137', '138'], 'value': '*'},{'id': '137', 'type': 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[], 'value': 'real'},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'mis'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'imag'},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'flow_max'},{'id': '173', 'type': 'call', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '175', 'type': 'argument_list', 'children': ['176']},{'id': '176', 'type': 'list_comprehension', 'children': ['177', '187']},{'id': '177', 'type': 'binary_operator', 'children': ['178', '186'], 'value': '**'},{'id': '178', 'type': '()', 'children': ['179']},{'id': '179', 'type': 'binary_operator', 'children': ['180', '183'], 'value': '/'},{'id': '180', 'type': 'attribute', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'rate_a'},{'id': '183', 'type': 'attribute', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '185', 'type': 'identifier', 'children': [], 'value': '_base_mva'},{'id': '186', 'type': 'integer', 'children': [], 'value': '2'},{'id': '187', 'type': 'for_in_clause', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '189', 'type': 'attribute', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '191', 'type': 'identifier', 'children': [], 'value': '_ln'},{'id': '192', 'type': 'for_statement', 'children': ['193', '196', '200']},{'id': '193', 'type': 'pattern_list', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '196', 'type': 'call', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '198', 'type': 'argument_list', 'children': ['199']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'flow_max'},{'id': '200', 'type': 'block', 'children': ['201']},{'id': '201', 'type': 'if_statement', 'children': ['202', '205']},{'id': '202', 'type': 'comparison_operator', 'children': ['203', '204'], 'value': '=='},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '204', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '205', 'type': 'block', 'children': ['206']},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'assignment', 'children': ['208', '211']},{'id': '208', 'type': 'subscript', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'flow_max'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'Inf'},{'id': '212', 'type': 'if_statement', 'children': ['213', '218', '258']},{'id': '213', 'type': 'comparison_operator', 'children': ['214', '217'], 'value': '=='},{'id': '214', 'type': 'attribute', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'flow_lim'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'IFLOW'},{'id': '218', 'type': 'block', 'children': ['219', '227', '235']},{'id': '219', 'type': 'expression_statement', 'children': ['220']},{'id': '220', 'type': 'assignment', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'If'},{'id': '222', 'type': 'binary_operator', 'children': ['223', '226'], 'value': '*'},{'id': '223', 'type': 'attribute', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '225', 'type': 'identifier', 'children': [], 'value': '_Yf'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'V'},{'id': '227', 'type': 'expression_statement', 'children': ['228']},{'id': '228', 'type': 'assignment', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'It'},{'id': '230', 'type': 'binary_operator', 'children': ['231', '234'], 'value': '*'},{'id': '231', 'type': 'attribute', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '233', 'type': 'identifier', 'children': [], 'value': '_Yt'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'V'},{'id': '235', 'type': 'expression_statement', 'children': ['236']},{'id': '236', 'type': 'assignment', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '238', 'type': 'subscript', 'children': ['239', '240', '249']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'r_'},{'id': '240', 'type': 'binary_operator', 'children': ['241', '248'], 'value': '-'},{'id': '241', 'type': '()', 'children': ['242']},{'id': '242', 'type': 'binary_operator', 'children': ['243', '244'], 'value': '*'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'If'},{'id': '244', 'type': 'call', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'conj'},{'id': '246', 'type': 'argument_list', 'children': ['247']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'If'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'flow_max'},{'id': '249', 'type': 'binary_operator', 'children': ['250', '257'], 'value': '-'},{'id': '250', 'type': '()', 'children': ['251']},{'id': '251', 'type': 'binary_operator', 'children': ['252', '253'], 'value': '*'},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'It'},{'id': '253', 'type': 'call', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'conj'},{'id': '255', 'type': 'argument_list', 'children': ['256']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'It'},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'flow_max'},{'id': '258', 'type': 'else_clause', 'children': ['259']},{'id': '259', 'type': 'block', 'children': ['260', '274', '288', '303', '318']},{'id': '260', 'type': 'expression_statement', 'children': ['261']},{'id': '261', 'type': 'assignment', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'i_fbus'},{'id': '263', 'type': 'list_comprehension', 'children': ['264', '269']},{'id': '264', 'type': 'attribute', 'children': ['265', '268']},{'id': '265', 'type': 'attribute', 'children': ['266', '267']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'from_bus'},{'id': '268', 'type': 'identifier', 'children': [], 'value': '_i'},{'id': '269', 'type': 'for_in_clause', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '271', 'type': 'attribute', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '273', 'type': 'identifier', 'children': [], 'value': '_ln'},{'id': '274', 'type': 'expression_statement', 'children': ['275']},{'id': '275', 'type': 'assignment', 'children': ['276', '277']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'i_tbus'},{'id': '277', 'type': 'list_comprehension', 'children': ['278', '283']},{'id': '278', 'type': 'attribute', 'children': ['279', '282']},{'id': '279', 'type': 'attribute', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'to_bus'},{'id': '282', 'type': 'identifier', 'children': [], 'value': '_i'},{'id': '283', 'type': 'for_in_clause', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '285', 'type': 'attribute', 'children': ['286', '287']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '287', 'type': 'identifier', 'children': [], 'value': '_ln'},{'id': '288', 'type': 'expression_statement', 'children': ['289']},{'id': '289', 'type': 'assignment', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'Sf'},{'id': '291', 'type': 'binary_operator', 'children': ['292', '295'], 'value': '*'},{'id': '292', 'type': 'subscript', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'V'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'i_fbus'},{'id': '295', 'type': 'call', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'conj'},{'id': '297', 'type': 'argument_list', 'children': ['298']},{'id': '298', 'type': 'binary_operator', 'children': ['299', '302'], 'value': '*'},{'id': '299', 'type': 'attribute', 'children': ['300', '301']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '301', 'type': 'identifier', 'children': [], 'value': '_Yf'},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'V'},{'id': '303', 'type': 'expression_statement', 'children': ['304']},{'id': '304', 'type': 'assignment', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'St'},{'id': '306', 'type': 'binary_operator', 'children': ['307', '310'], 'value': '*'},{'id': '307', 'type': 'subscript', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'V'},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'i_tbus'},{'id': '310', 'type': 'call', 'children': ['311', '312']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'conj'},{'id': '312', 'type': 'argument_list', 'children': ['313']},{'id': '313', 'type': 'binary_operator', 'children': ['314', '317'], 'value': '*'},{'id': '314', 'type': 'attribute', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '316', 'type': 'identifier', 'children': [], 'value': '_Yt'},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'V'},{'id': '318', 'type': 'if_statement', 'children': ['319', '324', '348', '380']},{'id': '319', 'type': 'comparison_operator', 'children': ['320', '323'], 'value': '=='},{'id': '320', 'type': 'attribute', 'children': ['321', '322']},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'flow_lim'},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'PFLOW'},{'id': '324', 'type': 'block', 'children': ['325']},{'id': '325', 'type': 'expression_statement', 'children': ['326']},{'id': '326', 'type': 'assignment', 'children': ['327', '328']},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '328', 'type': 'subscript', 'children': ['329', '330', '339']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'r_'},{'id': '330', 'type': 'binary_operator', 'children': ['331', '338'], 'value': '-'},{'id': '331', 'type': 'binary_operator', 'children': ['332', '337'], 'value': '**'},{'id': '332', 'type': 'call', 'children': ['333', '336']},{'id': '333', 'type': 'attribute', 'children': ['334', '335']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'Sf'},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'real'},{'id': '336', 'type': 'argument_list', 'children': []},{'id': '337', 'type': 'integer', 'children': [], 'value': '2'},{'id': '338', 'type': 'identifier', 'children': [], 'value': 'flow_max'},{'id': '339', 'type': 'binary_operator', 'children': ['340', '347'], 'value': '-'},{'id': '340', 'type': 'binary_operator', 'children': ['341', '346'], 'value': '**'},{'id': '341', 'type': 'call', 'children': ['342', '345']},{'id': '342', 'type': 'attribute', 'children': ['343', '344']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'St'},{'id': '344', 'type': 'identifier', 'children': [], 'value': 'real'},{'id': '345', 'type': 'argument_list', 'children': []},{'id': '346', 'type': 'integer', 'children': [], 'value': '2'},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'flow_max'},{'id': '348', 'type': 'elif_clause', 'children': ['349', '354']},{'id': '349', 'type': 'comparison_operator', 'children': ['350', '353'], 'value': '=='},{'id': '350', 'type': 'attribute', 'children': ['351', '352']},{'id': '351', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'flow_lim'},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'SFLOW'},{'id': '354', 'type': 'block', 'children': ['355']},{'id': '355', 'type': 'expression_statement', 'children': ['356']},{'id': '356', 'type': 'assignment', 'children': ['357', '358']},{'id': '357', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '358', 'type': 'attribute', 'children': ['359', '379']},{'id': '359', 'type': 'subscript', 'children': ['360', '361', '370']},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'r_'},{'id': '361', 'type': 'binary_operator', 'children': ['362', '369'], 'value': '-'},{'id': '362', 'type': '()', 'children': ['363']},{'id': '363', 'type': 'binary_operator', 'children': ['364', '365'], 'value': '*'},{'id': '364', 'type': 'identifier', 'children': [], 'value': 'Sf'},{'id': '365', 'type': 'call', 'children': ['366', '367']},{'id': '366', 'type': 'identifier', 'children': [], 'value': 'conj'},{'id': '367', 'type': 'argument_list', 'children': ['368']},{'id': '368', 'type': 'identifier', 'children': [], 'value': 'Sf'},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'flow_max'},{'id': '370', 'type': 'binary_operator', 'children': ['371', '378'], 'value': '-'},{'id': '371', 'type': '()', 'children': ['372']},{'id': '372', 'type': 'binary_operator', 'children': ['373', '374'], 'value': '*'},{'id': '373', 'type': 'identifier', 'children': [], 'value': 'St'},{'id': '374', 'type': 'call', 'children': ['375', '376']},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'conj'},{'id': '376', 'type': 'argument_list', 'children': ['377']},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'St'},{'id': '378', 'type': 'identifier', 'children': [], 'value': 'flow_max'},{'id': '379', 'type': 'identifier', 'children': [], 'value': 'real'},{'id': '380', 'type': 'else_clause', 'children': ['381']},{'id': '381', 'type': 'block', 'children': ['382']},{'id': '382', 'type': 'raise_statement', 'children': ['383']},{'id': '383', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '384', 'type': 'return_statement', 'children': ['385']},{'id': '385', 'type': 'expression_list', 'children': ['386', '387']},{'id': '386', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'g'} | def _gh(self, x):
Pgen = x[self._Pg.i1:self._Pg.iN + 1]
Qgen = x[self._Qg.i1:self._Qg.iN + 1]
for i, gen in enumerate(self._gn):
gen.p = Pgen[i] * self._base_mva
gen.q = Qgen[i] * self._base_mva
Sbus = self.om.case.getSbus(self._bs)
Vang = x[self._Va.i1:self._Va.iN + 1]
Vmag = x[self._Vm.i1:self._Vm.iN + 1]
V = Vmag * exp(1j * Vang)
mis = V * conj(self._Ybus * V) - Sbus
g = r_[mis.real,
mis.imag]
flow_max = array([(l.rate_a / self._base_mva)**2 for l in self._ln])
for i, v in enumerate(flow_max):
if v == 0.0:
flow_max[i] = Inf
if self.flow_lim == IFLOW:
If = self._Yf * V
It = self._Yt * V
h = r_[(If * conj(If)) - flow_max,
(It * conj(It)) - flow_max]
else:
i_fbus = [e.from_bus._i for e in self._ln]
i_tbus = [e.to_bus._i for e in self._ln]
Sf = V[i_fbus] * conj(self._Yf * V)
St = V[i_tbus] * conj(self._Yt * V)
if self.flow_lim == PFLOW:
h = r_[Sf.real()**2 - flow_max,
St.real()**2 - flow_max]
elif self.flow_lim == SFLOW:
h = r_[(Sf * conj(Sf)) - flow_max,
(St * conj(St)) - flow_max].real
else:
raise ValueError
return h, g |
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['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'case'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'online_generators'},{'id': '19', 'type': 'if_clause', 'children': ['20']},{'id': '20', 'type': 'comparison_operator', 'children': ['21', '26'], 'value': '!='},{'id': '21', 'type': 'attribute', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'bus'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'REFERENCE'},{'id': '27', 'type': 'assert_statement', 'children': ['28']},{'id': '28', 'type': 'comparison_operator', 'children': ['29', '33'], 'value': '=='},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'gs'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'binary_operator', 'children': ['44', '45'], 'value': '%'},{'id': '44', 'type': 'string', 'children': [], 'value': '"Action: %s"'},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '49', 'type': 'for_statement', 'children': ['50', '53', '57']},{'id': '50', 'type': 'pattern_list', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'gs'},{'id': '57', 'type': 'block', 'children': ['58']},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '63', 'type': 'subscript', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '79']},{'id': '68', 'type': 'attribute', 'children': ['69', '78']},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'NewtonPF'},{'id': '71', 'type': 'argument_list', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'case'},{'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '77', 'type': 'False', 'children': []},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'solve'},{'id': '79', 'type': 'argument_list', 'children': []},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '91']},{'id': '82', 'type': 'subscript', 'children': ['83', '86', '88']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '85', 'type': 'identifier', 'children': [], 'value': '_Pg'},{'id': '86', 'type': 'slice', 'children': ['87']},{'id': '87', 'type': 'colon', 'children': []},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '90', 'type': 'identifier', 'children': [], 'value': '_step'},{'id': '91', 'type': 'list_comprehension', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '95', 'type': 'for_in_clause', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '97', 'type': 'attribute', 'children': ['98', '101']},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'case'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'online_generators'},{'id': '102', 'type': 'if_statement', 'children': ['103', '115']},{'id': '103', 'type': 'comparison_operator', 'children': ['104', '107'], 'value': '!='},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '106', 'type': 'identifier', 'children': [], 'value': '_step'},{'id': '107', 'type': 'binary_operator', 'children': ['108', '114'], 'value': '-'},{'id': '108', 'type': 'call', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '110', 'type': 'argument_list', 'children': ['111']},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'profile'},{'id': '114', 'type': 'integer', 'children': [], 'value': '1'},{'id': '115', 'type': 'block', 'children': ['116', '134']},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'pq_buses'},{'id': '119', 'type': 'list_comprehension', 'children': ['120', '121', '128']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '121', 'type': 'for_in_clause', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '123', 'type': 'attribute', 'children': ['124', '127']},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'case'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'buses'},{'id': '128', 'type': 'if_clause', 'children': ['129']},{'id': '129', 'type': 'comparison_operator', 'children': ['130', '133'], 'value': '=='},{'id': '130', 'type': 'attribute', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'PQ'},{'id': '134', 'type': 'for_statement', 'children': ['135', '138', '142']},{'id': '135', 'type': 'pattern_list', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'pq_buses'},{'id': '142', 'type': 'block', 'children': ['143']},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'assignment', 'children': ['145', '148']},{'id': '145', 'type': 'attribute', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'p_demand'},{'id': '148', 'type': 'binary_operator', 'children': ['149', '154'], 'value': '*'},{'id': '149', 'type': 'subscript', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '152', 'type': 'identifier', 'children': [], 'value': '_Pd0'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '154', 'type': 'subscript', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'profile'},{'id': '158', 'type': 'binary_operator', 'children': ['159', '162'], 'value': '+'},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '161', 'type': 'identifier', 'children': [], 'value': '_step'},{'id': '162', 'type': 'integer', 'children': [], 'value': '1'},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'augmented_assignment', 'children': ['165', '168'], 'value': '+='},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '167', 'type': 'identifier', 'children': [], 'value': '_step'},{'id': '168', 'type': 'integer', 'children': [], 'value': '1'},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'call', 'children': ['171', '174']},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '174', 'type': 'argument_list', 'children': ['175']},{'id': '175', 'type': 'binary_operator', 'children': ['176', '177'], 'value': '%'},{'id': '176', 'type': 'string', 'children': [], 'value': '"Entering step %d."'},{'id': '177', 'type': 'attribute', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '179', 'type': 'identifier', 'children': [], 'value': '_step'} | def performAction(self, action):
gs = [g for g in self.case.online_generators if g.bus.type !=REFERENCE]
assert len(action) == len(gs)
logger.info("Action: %s" % list(action))
for i, g in enumerate(gs):
g.p = action[i]
NewtonPF(self.case, verbose=False).solve()
self._Pg[:, self._step] = [g.p for g in self.case.online_generators]
if self._step != len(self.profile) - 1:
pq_buses = [b for b in self.case.buses if b.type == PQ]
for i, b in enumerate(pq_buses):
b.p_demand = self._Pd0[i] * self.profile[self._step + 1]
self._step += 1
logger.info("Entering step %d." % self._step) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20', '28']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'blt'},{'id': '3', 'type': 'parameters', 'children': ['4', '12']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'generic_type', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '9', 'type': 'type_parameter', 'children': ['10']},{'id': '10', 'type': 'type', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'SYM'},{'id': '12', 'type': 'typed_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '14', 'type': 'type', 'children': ['15']},{'id': '15', 'type': 'generic_type', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '17', 'type': 'type_parameter', 'children': ['18']},{'id': '18', 'type': 'type', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'SYM'},{'id': '20', 'type': 'type', 'children': ['21']},{'id': '21', 'type': 'generic_type', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'Dict'},{'id': '23', 'type': 'type_parameter', 'children': ['24', '26']},{'id': '24', 'type': 'type', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '26', 'type': 'type', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'Any'},{'id': '28', 'type': 'block', 'children': ['29', '39', '58']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'J'},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'ca'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'jacobian'},{'id': '36', 'type': 'argument_list', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '49']},{'id': '41', 'type': 'pattern_list', 'children': ['42', '43', '44', '45', '46', '47', '48']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'nblock'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'rowperm'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'colperm'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'rowblock'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'colblock'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'coarserow'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'coarsecol'},{'id': '49', 'type': 'call', 'children': ['50', '57']},{'id': '50', 'type': 'attribute', 'children': ['51', '56']},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'J'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'sparsity'},{'id': '55', 'type': 'argument_list', 'children': []},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'btf'},{'id': '57', 'type': 'argument_list', 'children': []},{'id': '58', 'type': 'return_statement', 'children': ['59']},{'id': '59', 'type': 'dictionary', 'children': ['60', '63', '66', '69', '72', '75', '78', '81']},{'id': '60', 'type': 'pair', 'children': ['61', '62']},{'id': '61', 'type': 'string', 'children': [], 'value': "'J'"},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'J'},{'id': '63', 'type': 'pair', 'children': ['64', '65']},{'id': '64', 'type': 'string', 'children': [], 'value': "'nblock'"},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'nblock'},{'id': '66', 'type': 'pair', 'children': ['67', '68']},{'id': '67', 'type': 'string', 'children': [], 'value': "'rowperm'"},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'rowperm'},{'id': '69', 'type': 'pair', 'children': ['70', '71']},{'id': '70', 'type': 'string', 'children': [], 'value': "'colperm'"},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'colperm'},{'id': '72', 'type': 'pair', 'children': ['73', '74']},{'id': '73', 'type': 'string', 'children': [], 'value': "'rowblock'"},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'rowblock'},{'id': '75', 'type': 'pair', 'children': ['76', '77']},{'id': '76', 'type': 'string', 'children': [], 'value': "'colblock'"},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'colblock'},{'id': '78', 'type': 'pair', 'children': ['79', '80']},{'id': '79', 'type': 'string', 'children': [], 'value': "'coarserow'"},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'coarserow'},{'id': '81', 'type': 'pair', 'children': ['82', '83']},{'id': '82', 'type': 'string', 'children': [], 'value': "'coarsecol'"},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'coarsecol'} | def blt(f: List[SYM], x: List[SYM]) -> Dict[str, Any]:
J = ca.jacobian(f, x)
nblock, rowperm, colperm, rowblock, colblock, coarserow, coarsecol = J.sparsity().btf()
return {
'J': J,
'nblock': nblock,
'rowperm': rowperm,
'colperm': colperm,
'rowblock': rowblock,
'colblock': colblock,
'coarserow': coarserow,
'coarsecol': coarsecol
} |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_generators'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '13']},{'id': '8', 'type': 'attribute', 'children': ['9', '12']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '13', 'type': 'argument_list', 'children': ['14']},{'id': '14', 'type': 'keyword_argument', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '16', 'type': 'lambda', 'children': ['17', '19']},{'id': '17', 'type': 'lambda_parameters', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'gn'},{'id': '19', 'type': 'attribute', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'gn'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'bus'},{'id': '23', 'type': 'identifier', 'children': [], 'value': '_i'} | def sort_generators(self):
self.generators.sort(key=lambda gn: gn.bus._i) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'create'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'dotdata'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'prog'},{'id': '8', 'type': 'string', 'children': [], 'value': '"dot"'},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '11', 'type': 'string', 'children': [], 'value': '"xdot"'},{'id': '12', 'type': 'block', 'children': ['13', '18', '24', '30', '44', '71', '81', '88', '96', '103', '109', '120', '149', '155', '161', '167', '190', '196', '208', '261', '269', '299', '306']},{'id': '13', 'type': 'import_statement', 'children': ['14', '16']},{'id': '14', 'type': 'dotted_name', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '16', 'type': 'dotted_name', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'tempfile'},{'id': '18', 'type': 'import_from_statement', 'children': ['19', '22']},{'id': '19', 'type': 'dotted_name', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'dot2tex'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'dotparsing'},{'id': '22', 'type': 'dotted_name', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'find_graphviz'},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'progs'},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'find_graphviz'},{'id': '29', 'type': 'argument_list', 'children': []},{'id': '30', 'type': 'if_statement', 'children': ['31', '34']},{'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': 'is'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'progs'},{'id': '33', 'type': 'None', 'children': []},{'id': '34', 'type': 'block', 'children': ['35', '42']},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'string', 'children': [], 'value': '"GraphViz executables not found."'},{'id': '42', 'type': 'return_statement', 'children': ['43']},{'id': '43', 'type': 'None', 'children': []},{'id': '44', 'type': 'if_statement', 'children': ['45', '52']},{'id': '45', 'type': 'not_operator', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'progs'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'has_key'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'prog'},{'id': '52', 'type': 'block', 'children': ['53', '69']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'binary_operator', 'children': ['60', '61', '62'], 'value': '%'},{'id': '60', 'type': 'string', 'children': [], 'value': "'Invalid program [%s]. Available programs are: %s'"},{'id': '61', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '62', 'type': 'tuple', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'prog'},{'id': '64', 'type': 'call', 'children': ['65', '68']},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'progs'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '68', 'type': 'argument_list', 'children': []},{'id': '69', 'type': 'return_statement', 'children': ['70']},{'id': '70', 'type': 'None', 'children': []},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'assignment', 'children': ['73', '76']},{'id': '73', 'type': 'pattern_list', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'tmp_fd'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'tmp_name'},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'tempfile'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'mkstemp'},{'id': '80', 'type': 'argument_list', 'children': []},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'tmp_fd'},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'assignment', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'dot_fd'},{'id': '91', 'type': 'call', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '93', 'type': 'argument_list', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'tmp_name'},{'id': '95', 'type': 'string', 'children': [], 'value': '"w+b"'},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'call', 'children': ['98', '101']},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'dot_fd'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'dotdata'},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '108']},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'dot_fd'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '108', 'type': 'argument_list', 'children': []},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'assignment', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'tmp_dir'},{'id': '112', 'type': 'call', 'children': ['113', '118']},{'id': '113', 'type': 'attribute', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'dirname'},{'id': '118', 'type': 'argument_list', 'children': ['119']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'tmp_name'},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'assignment', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '123', 'type': 'call', 'children': ['124', '127']},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'Popen'},{'id': '127', 'type': 'argument_list', 'children': ['128', '136', '139', '144']},{'id': '128', 'type': 'tuple', 'children': ['129', '132', '135']},{'id': '129', 'type': 'subscript', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'progs'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'prog'},{'id': '132', 'type': 'binary_operator', 'children': ['133', '134'], 'value': '+'},{'id': '133', 'type': 'string', 'children': [], 'value': "'-T'"},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'tmp_name'},{'id': '136', 'type': 'keyword_argument', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'cwd'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'tmp_dir'},{'id': '139', 'type': 'keyword_argument', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'PIPE'},{'id': '144', 'type': 'keyword_argument', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'subprocess'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'PIPE'},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'assignment', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '152', 'type': 'attribute', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '155', 'type': 'expression_statement', 'children': ['156']},{'id': '156', 'type': 'assignment', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '161', 'type': 'expression_statement', 'children': ['162']},{'id': '162', 'type': 'assignment', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'stdout_output'},{'id': '164', 'type': 'call', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '166', 'type': 'argument_list', 'children': []},{'id': '167', 'type': 'while_statement', 'children': ['168', '169']},{'id': '168', 'type': 'True', 'children': []},{'id': '169', 'type': 'block', 'children': ['170', '178', '183']},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '173', 'type': 'call', 'children': ['174', '177']},{'id': '174', 'type': 'attribute', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'read'},{'id': '177', 'type': 'argument_list', 'children': []},{'id': '178', 'type': 'if_statement', 'children': ['179', '181']},{'id': '179', 'type': 'not_operator', 'children': ['180']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '181', 'type': 'block', 'children': ['182']},{'id': '182', 'type': 'break_statement', 'children': []},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'call', 'children': ['185', '188']},{'id': '185', 'type': 'attribute', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'stdout_output'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '188', 'type': 'argument_list', 'children': ['189']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '190', 'type': 'expression_statement', 'children': ['191']},{'id': '191', 'type': 'call', 'children': ['192', '195']},{'id': '192', 'type': 'attribute', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '195', 'type': 'argument_list', 'children': []},{'id': '196', 'type': 'if_statement', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'stdout_output'},{'id': '198', 'type': 'block', 'children': ['199']},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'stdout_output'},{'id': '202', 'type': 'call', 'children': ['203', '206']},{'id': '203', 'type': 'attribute', 'children': ['204', '205']},{'id': '204', 'type': 'string', 'children': [], 'value': "''"},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '206', 'type': 'argument_list', 'children': ['207']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'stdout_output'},{'id': '208', 'type': 'if_statement', 'children': ['209', '213']},{'id': '209', 'type': 'not_operator', 'children': ['210']},{'id': '210', 'type': 'attribute', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'closed'},{'id': '213', 'type': 'block', 'children': ['214', '220', '243', '249']},{'id': '214', 'type': 'expression_statement', 'children': ['215']},{'id': '215', 'type': 'assignment', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'stderr_output'},{'id': '217', 'type': 'call', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '219', 'type': 'argument_list', 'children': []},{'id': '220', 'type': 'while_statement', 'children': ['221', '222']},{'id': '221', 'type': 'True', 'children': []},{'id': '222', 'type': 'block', 'children': ['223', '231', '236']},{'id': '223', 'type': 'expression_statement', 'children': ['224']},{'id': '224', 'type': 'assignment', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '226', 'type': 'call', 'children': ['227', '230']},{'id': '227', 'type': 'attribute', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'read'},{'id': '230', 'type': 'argument_list', 'children': []},{'id': '231', 'type': 'if_statement', 'children': ['232', '234']},{'id': '232', 'type': 'not_operator', 'children': ['233']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '234', 'type': 'block', 'children': ['235']},{'id': '235', 'type': 'break_statement', 'children': []},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'call', 'children': ['238', '241']},{'id': '238', 'type': 'attribute', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'stderr_output'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '241', 'type': 'argument_list', 'children': ['242']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '243', 'type': 'expression_statement', 'children': ['244']},{'id': '244', 'type': 'call', 'children': ['245', '248']},{'id': '245', 'type': 'attribute', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '248', 'type': 'argument_list', 'children': []},{'id': '249', 'type': 'if_statement', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'stderr_output'},{'id': '251', 'type': 'block', 'children': ['252']},{'id': '252', 'type': 'expression_statement', 'children': ['253']},{'id': '253', 'type': 'assignment', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'stderr_output'},{'id': '255', 'type': 'call', 'children': ['256', '259']},{'id': '256', 'type': 'attribute', 'children': ['257', '258']},{'id': '257', 'type': 'string', 'children': [], 'value': "''"},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '259', 'type': 'argument_list', 'children': ['260']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'stderr_output'},{'id': '261', 'type': 'expression_statement', 'children': ['262']},{'id': '262', 'type': 'assignment', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'status'},{'id': '264', 'type': 'call', 'children': ['265', '268']},{'id': '265', 'type': 'attribute', 'children': ['266', '267']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'wait'},{'id': '268', 'type': 'argument_list', 'children': []},{'id': '269', 'type': 'if_statement', 'children': ['270', '273', '288']},{'id': '270', 'type': 'comparison_operator', 'children': ['271', '272'], 'value': '!='},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'status'},{'id': '272', 'type': 'integer', 'children': [], 'value': '0'},{'id': '273', 'type': 'block', 'children': ['274']},{'id': '274', 'type': 'expression_statement', 'children': ['275']},{'id': '275', 'type': 'call', 'children': ['276', '279']},{'id': '276', 'type': 'attribute', 'children': ['277', '278']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '279', 'type': 'argument_list', 'children': ['280']},{'id': '280', 'type': 'binary_operator', 'children': ['281', '284'], 'value': '%'},{'id': '281', 'type': 'concatenated_string', 'children': ['282', '283']},{'id': '282', 'type': 'string', 'children': [], 'value': '"Program [%s] terminated with status: %d. stderr "'},{'id': '283', 'type': 'string', 'children': [], 'value': '"follows: %s"'},{'id': '284', 'type': 'tuple', 'children': ['285', '286', '287']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'prog'},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'status'},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'stderr_output'},{'id': '288', 'type': 'elif_clause', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'stderr_output'},{'id': '290', 'type': 'block', 'children': ['291']},{'id': '291', 'type': 'expression_statement', 'children': ['292']},{'id': '292', 'type': 'call', 'children': ['293', '296']},{'id': '293', 'type': 'attribute', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '296', 'type': 'argument_list', 'children': ['297', '298']},{'id': '297', 'type': 'string', 'children': [], 'value': '"%s"'},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'stderr_output'},{'id': '299', 'type': 'expression_statement', 'children': ['300']},{'id': '300', 'type': 'call', 'children': ['301', '304']},{'id': '301', 'type': 'attribute', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'unlink'},{'id': '304', 'type': 'argument_list', 'children': ['305']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'tmp_name'},{'id': '306', 'type': 'return_statement', 'children': ['307']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'stdout_output'} | def create(self, dotdata, prog="dot", format="xdot"):
import os, tempfile
from dot2tex.dotparsing import find_graphviz
progs = find_graphviz()
if progs is None:
logger.warning("GraphViz executables not found.")
return None
if not progs.has_key(prog):
logger.warning('Invalid program [%s]. Available programs are: %s' % \
(prog, progs.keys()))
return None
tmp_fd, tmp_name = tempfile.mkstemp()
os.close(tmp_fd)
dot_fd = file(tmp_name, "w+b")
dot_fd.write(dotdata)
dot_fd.close()
tmp_dir = os.path.dirname(tmp_name)
p = subprocess.Popen((progs[prog], '-T'+format, tmp_name),
cwd=tmp_dir, stderr=subprocess.PIPE, stdout=subprocess.PIPE)
stderr = p.stderr
stdout = p.stdout
stdout_output = list()
while True:
data = stdout.read()
if not data:
break
stdout_output.append(data)
stdout.close()
if stdout_output:
stdout_output = ''.join(stdout_output)
if not stderr.closed:
stderr_output = list()
while True:
data = stderr.read()
if not data:
break
stderr_output.append(data)
stderr.close()
if stderr_output:
stderr_output = ''.join(stderr_output)
status = p.wait()
if status != 0 :
logger.error("Program [%s] terminated with status: %d. stderr " \
"follows: %s" % ( prog, status, stderr_output ) )
elif stderr_output:
logger.error( "%s", stderr_output )
os.unlink(tmp_name)
return stdout_output |
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'block', 'children': ['15', '23']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '18', 'type': 'binary_operator', 'children': ['19', '20'], 'value': '+'},{'id': '19', 'type': 'string', 'children': [], 'value': '"\\n"'},{'id': '20', 'type': 'binary_operator', 'children': ['21', '22'], 'value': '*'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '22', 'type': 'string', 'children': [], 'value': '" "'},{'id': '23', 'type': 'if_statement', 'children': ['24', '28', '106']},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '28', 'type': 'block', 'children': ['29', '52', '73', '85']},{'id': '29', 'type': 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'type': 'assignment', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '49', 'type': 'binary_operator', 'children': ['50', '51'], 'value': '+'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '51', 'type': 'string', 'children': [], 'value': '" "'},{'id': '52', 'type': 'if_statement', 'children': ['53', '66']},{'id': '53', 'type': 'boolean_operator', 'children': ['54', '58'], 'value': 'or'},{'id': '54', 'type': 'not_operator', 'children': ['55']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'tail'},{'id': '58', 'type': 'not_operator', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '65']},{'id': '60', 'type': 'attribute', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'tail'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '65', 'type': 'argument_list', 'children': []},{'id': '66', 'type': 'block', 'children': ['67']},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'assignment', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'tail'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '73', 'type': 'for_statement', 'children': ['74', '75', '76']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '76', 'type': 'block', 'children': ['77']},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'call', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '80', 'type': 'argument_list', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '82', 'type': 'binary_operator', 'children': ['83', '84'], 'value': '+'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '84', 'type': 'integer', 'children': [], 'value': '1'},{'id': '85', 'type': 'if_statement', 'children': ['86', '99']},{'id': '86', 'type': 'boolean_operator', 'children': ['87', '91'], 'value': 'or'},{'id': '87', 'type': 'not_operator', 'children': ['88']},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'tail'},{'id': '91', 'type': 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'block', 'children': ['108']},{'id': '108', 'type': 'if_statement', 'children': ['109', '125']},{'id': '109', 'type': 'boolean_operator', 'children': ['110', '111'], 'value': 'and'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '111', 'type': '()', 'children': ['112']},{'id': '112', 'type': 'boolean_operator', 'children': ['113', '117'], 'value': 'or'},{'id': '113', 'type': 'not_operator', 'children': ['114']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'tail'},{'id': '117', 'type': 'not_operator', 'children': ['118']},{'id': '118', 'type': 'call', 'children': ['119', '124']},{'id': '119', 'type': 'attribute', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'tail'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '124', 'type': 'argument_list', 'children': []},{'id': '125', 'type': 'block', 'children': ['126']},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'elem'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'tail'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '135', 'type': 'call', 'children': ['136', '139']},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'Element'},{'id': '139', 'type': 'argument_list', 'children': ['140']},{'id': '140', 'type': 'string', 'children': [], 'value': "'metrics'"},{'id': '141', 'type': 'expression_statement', 'children': ['142']},{'id': '142', 'type': 'assignment', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '144', 'type': 'call', 'children': ['145', '148']},{'id': '145', 'type': 'attribute', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'Element'},{'id': '148', 'type': 'argument_list', 'children': ['149']},{'id': '149', 'type': 'string', 'children': [], 'value': "'files'"},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'call', 'children': ['152', '155']},{'id': '152', 'type': 'attribute', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '155', 'type': 'argument_list', 'children': ['156']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '157', 'type': 'for_statement', 'children': ['158', '159', '164']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '159', 'type': 'call', 'children': ['160', '163']},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'file_metrics'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '163', 'type': 'argument_list', 'children': []},{'id': '164', 'type': 'block', 'children': ['165', '186']},{'id': '165', 'type': 'expression_statement', 'children': ['166']},{'id': '166', 'type': 'assignment', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'tmp_file'},{'id': '168', 'type': 'call', 'children': ['169', '172']},{'id': '169', 'type': 'attribute', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'SubElement'},{'id': '172', 'type': 'argument_list', 'children': ['173', '174', '175']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '174', 'type': 'string', 'children': [], 'value': '"file"'},{'id': '175', 'type': 'dictionary', 'children': ['176', '179']},{'id': '176', 'type': 'pair', 'children': ['177', '178']},{'id': '177', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '179', 'type': 'pair', 'children': ['180', '181']},{'id': '180', 'type': 'string', 'children': [], 'value': "'language'"},{'id': '181', 'type': 'subscript', 'children': ['182', '185']},{'id': '182', 'type': 'subscript', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'file_metrics'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '185', 'type': 'string', 'children': [], 'value': "'language'"},{'id': '186', 'type': 'for_statement', 'children': ['187', '188', '195']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '188', 'type': 'call', 'children': ['189', '194']},{'id': '189', 'type': 'attribute', 'children': ['190', '193']},{'id': '190', 'type': 'subscript', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'file_metrics'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '194', 'type': 'argument_list', 'children': []},{'id': '195', 'type': 'block', 'children': ['196', '202']},{'id': '196', 'type': 'if_statement', 'children': ['197', '200']},{'id': '197', 'type': 'comparison_operator', 'children': ['198', '199'], 'value': '=='},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '199', 'type': 'string', 'children': [], 'value': "'language'"},{'id': '200', 'type': 'block', 'children': ['201']},{'id': '201', 'type': 'continue_statement', 'children': []},{'id': '202', 'type': 'expression_statement', 'children': ['203']},{'id': '203', 'type': 'assignment', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'tmp_metric'},{'id': '205', 'type': 'call', 'children': ['206', '209']},{'id': '206', 'type': 'attribute', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'SubElement'},{'id': '209', 'type': 'argument_list', 'children': ['210', '211', '212']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'tmp_file'},{'id': '211', 'type': 'string', 'children': [], 'value': '"metric"'},{'id': '212', 'type': 'dictionary', 'children': ['213', '216']},{'id': '213', 'type': 'pair', 'children': ['214', '215']},{'id': '214', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '216', 'type': 'pair', 'children': ['217', '218']},{'id': '217', 'type': 'string', 'children': [], 'value': "'value'"},{'id': '218', 'type': 'call', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '220', 'type': 'argument_list', 'children': ['221']},{'id': '221', 'type': 'subscript', 'children': ['222', '225']},{'id': '222', 'type': 'subscript', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'file_metrics'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '226', 'type': 'if_statement', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'build_metrics'},{'id': '228', 'type': 'block', 'children': ['229', '238']},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'assignment', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'build'},{'id': '232', 'type': 'call', 'children': ['233', '236']},{'id': '233', 'type': 'attribute', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'Element'},{'id': '236', 'type': 'argument_list', 'children': ['237']},{'id': '237', 'type': 'string', 'children': [], 'value': "'build'"},{'id': '238', 'type': 'expression_statement', 'children': ['239']},{'id': '239', 'type': 'call', 'children': ['240', '243']},{'id': '240', 'type': 'attribute', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '243', 'type': 'argument_list', 'children': ['244']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'build'},{'id': '245', 'type': 'expression_statement', 'children': ['246']},{'id': '246', 'type': 'call', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '248', 'type': 'argument_list', 'children': ['249']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '250', 'type': 'if_statement', 'children': ['251', '252', '265']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'PY3'},{'id': '252', 'type': 'block', 'children': ['253']},{'id': '253', 'type': 'expression_statement', 'children': ['254']},{'id': '254', 'type': 'assignment', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'body'},{'id': '256', 'type': 'call', 'children': ['257', '260']},{'id': '257', 'type': 'attribute', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'tostring'},{'id': '260', 'type': 'argument_list', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '262', 'type': 'keyword_argument', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '264', 'type': 'string', 'children': [], 'value': "'unicode'"},{'id': '265', 'type': 'else_clause', 'children': ['266']},{'id': '266', 'type': 'block', 'children': ['267']},{'id': '267', 'type': 'expression_statement', 'children': ['268']},{'id': '268', 'type': 'assignment', 'children': ['269', '270']},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'body'},{'id': '270', 'type': 'call', 'children': ['271', '274']},{'id': '271', 'type': 'attribute', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'ET'},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'tostring'},{'id': '274', 'type': 'argument_list', 'children': ['275']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '276', 'type': 'return_statement', 'children': ['277']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'body'} | def format(file_metrics, build_metrics):
def indent(elem, level=0):
i = "\n" + level*" "
if len(elem):
if not elem.text or not elem.text.strip():
elem.text = i + " "
if not elem.tail or not elem.tail.strip():
elem.tail = i
for elem in elem:
indent(elem, level+1)
if not elem.tail or not elem.tail.strip():
elem.tail = i
else:
if level and (not elem.tail or not elem.tail.strip()):
elem.tail = i
root = ET.Element('metrics')
files = ET.Element('files')
root.append(files)
for key in file_metrics.keys():
tmp_file = ET.SubElement(files, "file",
{'name': key, 'language': file_metrics[key]['language']})
for name in file_metrics[key].keys():
if name == 'language':
continue
tmp_metric = ET.SubElement(tmp_file, "metric",
{'name': name, 'value': str(file_metrics[key][name])})
if build_metrics:
build = ET.Element('build')
root.append(build)
indent(root)
if PY3:
body = ET.tostring(root, encoding='unicode')
else:
body = ET.tostring(root)
return body |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'governor'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'Xgov'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'Vgov'},{'id': '8', 'type': 'block', 'children': ['9', '15', '25', '34', '52', '70', '77', '84', '91', '98', '105', '112', '119', '126', '133', '140', '147', '154', '161', '168', '175', '199', '216', '229', '233', '269', '305', '309', '313', '349', '385', '398']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'governors'},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'governors'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'omegas'},{'id': '18', 'type': 'binary_operator', 'children': ['19', '22'], 'value': '*'},{'id': '19', 'type': 'binary_operator', 'children': ['20', '21'], 'value': '*'},{'id': '20', 'type': 'integer', 'children': [], 'value': '2'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'freq'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'Xgov'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'typ1'},{'id': '37', 'type': 'list_comprehension', 'children': ['38', '43', '46']},{'id': '38', 'type': 'attribute', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'generator'},{'id': '42', 'type': 'identifier', 'children': [], 'value': '_i'},{'id': '43', 'type': 'for_in_clause', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'governors'},{'id': '46', 'type': 'if_clause', 'children': ['47']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '51'], 'value': '=='},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'CONST_POWER'},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '55', 'type': 'list_comprehension', 'children': ['56', '61', '64']},{'id': '56', 'type': 'attribute', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'generator'},{'id': '60', 'type': 'identifier', 'children': [], 'value': '_i'},{'id': '61', 'type': 'for_in_clause', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'governors'},{'id': '64', 'type': 'if_clause', 'children': ['65']},{'id': '65', 'type': 'comparison_operator', 'children': ['66', '69'], 'value': '=='},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'GENERAL_IEEE'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '76']},{'id': '72', 'type': 'subscript', 'children': ['73', '74', '75']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'typ1'},{'id': '75', 'type': 'integer', 'children': [], 'value': '0'},{'id': '76', 'type': 'integer', 'children': [], 'value': '0'},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'Pm'},{'id': '80', 'type': 'subscript', 'children': ['81', '82', '83']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'Xgov'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '83', 'type': 'integer', 'children': [], 'value': '0'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'P'},{'id': '87', 'type': 'subscript', 'children': ['88', '89', '90']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'Xgov'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '90', 'type': 'integer', 'children': [], 'value': '1'},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '94', 'type': 'subscript', 'children': ['95', '96', '97']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'Xgov'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '97', 'type': 'integer', 'children': [], 'value': '2'},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'z'},{'id': '101', 'type': 'subscript', 'children': ['102', '103', '104']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'Xgov'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '104', 'type': 'integer', 'children': [], 'value': '3'},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'assignment', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'K'},{'id': '108', 'type': 'subscript', 'children': ['109', '110', '111']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '111', 'type': 'integer', 'children': [], 'value': '0'},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'T1'},{'id': '115', 'type': 'subscript', 'children': ['116', '117', '118']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '118', 'type': 'integer', 'children': [], 'value': '1'},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'T2'},{'id': '122', 'type': 'subscript', 'children': ['123', '124', '125']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '125', 'type': 'integer', 'children': [], 'value': '2'},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'assignment', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'T3'},{'id': '129', 'type': 'subscript', 'children': ['130', '131', '132']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '132', 'type': 'integer', 'children': [], 'value': '3'},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'Pup'},{'id': '136', 'type': 'subscript', 'children': ['137', '138', '139']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '139', 'type': 'integer', 'children': [], 'value': '4'},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'Pdown'},{'id': '143', 'type': 'subscript', 'children': ['144', '145', '146']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '146', 'type': 'integer', 'children': [], 'value': '5'},{'id': '147', 'type': 'expression_statement', 'children': ['148']},{'id': '148', 'type': 'assignment', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'Pmax'},{'id': '150', 'type': 'subscript', 'children': ['151', '152', '153']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '153', 'type': 'integer', 'children': [], 'value': '6'},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'assignment', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'Pmin'},{'id': '157', 'type': 'subscript', 'children': ['158', '159', '160']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '160', 'type': 'integer', 'children': [], 'value': '7'},{'id': '161', 'type': 'expression_statement', 'children': ['162']},{'id': '162', 'type': 'assignment', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'P0'},{'id': '164', 'type': 'subscript', 'children': ['165', '166', '167']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'Pgov'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '167', 'type': 'integer', 'children': [], 'value': '8'},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'assignment', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'omega'},{'id': '171', 'type': 'subscript', 'children': ['172', '173', '174']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'Vgov'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '174', 'type': 'integer', 'children': [], 'value': '0'},{'id': '175', 'type': 'expression_statement', 'children': ['176']},{'id': '176', 'type': 'assignment', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'dx'},{'id': '178', 'type': 'binary_operator', 'children': ['179', '180'], 'value': '*'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'K'},{'id': '180', 'type': '()', 'children': ['181']},{'id': '181', 'type': 'binary_operator', 'children': ['182', '188'], 'value': '+'},{'id': '182', 'type': 'binary_operator', 'children': ['183', '187'], 'value': '*'},{'id': '183', 'type': 'binary_operator', 'children': ['184', '186'], 'value': '/'},{'id': '184', 'type': 'unary_operator', 'children': ['185'], 'value': '-'},{'id': '185', 'type': 'integer', 'children': [], 'value': '1'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'T1'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '188', 'type': 'binary_operator', 'children': ['189', '195'], 'value': '*'},{'id': '189', 'type': '()', 'children': ['190']},{'id': '190', 'type': 'binary_operator', 'children': ['191', '192'], 'value': '-'},{'id': '191', 'type': 'integer', 'children': [], 'value': '1'},{'id': '192', 'type': 'binary_operator', 'children': ['193', '194'], 'value': '/'},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'T2'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'T1'},{'id': '195', 'type': '()', 'children': ['196']},{'id': '196', 'type': 'binary_operator', 'children': ['197', '198'], 'value': '-'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'omega'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'omegas'},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'assignment', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'dP'},{'id': '202', 'type': 'binary_operator', 'children': ['203', '208'], 'value': '+'},{'id': '203', 'type': 'binary_operator', 'children': ['204', '207'], 'value': '*'},{'id': '204', 'type': 'binary_operator', 'children': ['205', '206'], 'value': '/'},{'id': '205', 'type': 'integer', 'children': [], 'value': '1'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'T1'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '208', 'type': 'binary_operator', 'children': ['209', '212'], 'value': '*'},{'id': '209', 'type': 'binary_operator', 'children': ['210', '211'], 'value': '/'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'T2'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'T1'},{'id': '212', 'type': '()', 'children': ['213']},{'id': '213', 'type': 'binary_operator', 'children': ['214', '215'], 'value': '-'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'omega'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'omegas'},{'id': '216', 'type': 'expression_statement', 'children': ['217']},{'id': '217', 'type': 'assignment', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '219', 'type': 'binary_operator', 'children': ['220', '223'], 'value': '*'},{'id': '220', 'type': 'binary_operator', 'children': ['221', '222'], 'value': '/'},{'id': '221', 'type': 'integer', 'children': [], 'value': '1'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'T3'},{'id': '223', 'type': '()', 'children': ['224']},{'id': '224', 'type': 'binary_operator', 'children': ['225', '228'], 'value': '-'},{'id': '225', 'type': 'binary_operator', 'children': ['226', '227'], 'value': '-'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'P0'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'P'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'Pm'},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'assignment', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'y2'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '233', 'type': 'if_statement', 'children': ['234', '245']},{'id': '234', 'type': 'comparison_operator', 'children': ['235', '244'], 'value': '>='},{'id': '235', 'type': 'call', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '237', 'type': 'argument_list', 'children': ['238']},{'id': '238', 'type': 'call', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '240', 'type': 'argument_list', 'children': ['241']},{'id': '241', 'type': 'comparison_operator', 'children': ['242', '243'], 'value': '>'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'Pup'},{'id': '244', 'type': 'integer', 'children': [], 'value': '1'},{'id': '245', 'type': 'block', 'children': ['246']},{'id': '246', 'type': 'expression_statement', 'children': ['247']},{'id': '247', 'type': 'assignment', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'y2'},{'id': '249', 'type': 'binary_operator', 'children': ['250', '261'], 'value': '+'},{'id': '250', 'type': 'binary_operator', 'children': ['251', '260'], 'value': '*'},{'id': '251', 'type': '()', 'children': ['252']},{'id': '252', 'type': 'binary_operator', 'children': ['253', '254'], 'value': '-'},{'id': '253', 'type': 'integer', 'children': [], 'value': '1'},{'id': '254', 'type': 'call', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '256', 'type': 'argument_list', 'children': ['257']},{'id': '257', 'type': 'comparison_operator', 'children': ['258', '259'], 'value': '>'},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'Pup'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'y2'},{'id': '261', 'type': 'binary_operator', 'children': ['262', '268'], 'value': '*'},{'id': '262', 'type': 'call', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '264', 'type': 'argument_list', 'children': ['265']},{'id': '265', 'type': 'comparison_operator', 'children': ['266', '267'], 'value': '>'},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'Pup'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'Pup'},{'id': '269', 'type': 'if_statement', 'children': ['270', '281']},{'id': '270', 'type': 'comparison_operator', 'children': ['271', '280'], 'value': '>='},{'id': '271', 'type': 'call', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '273', 'type': 'argument_list', 'children': ['274']},{'id': '274', 'type': 'call', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '276', 'type': 'argument_list', 'children': ['277']},{'id': '277', 'type': 'comparison_operator', 'children': ['278', '279'], 'value': '<'},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'Pdown'},{'id': '280', 'type': 'integer', 'children': [], 'value': '1'},{'id': '281', 'type': 'block', 'children': ['282']},{'id': '282', 'type': 'expression_statement', 'children': ['283']},{'id': '283', 'type': 'assignment', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'y2'},{'id': '285', 'type': 'binary_operator', 'children': ['286', '297'], 'value': '+'},{'id': '286', 'type': 'binary_operator', 'children': ['287', '296'], 'value': '*'},{'id': '287', 'type': '()', 'children': ['288']},{'id': '288', 'type': 'binary_operator', 'children': ['289', '290'], 'value': '-'},{'id': '289', 'type': 'integer', 'children': [], 'value': '1'},{'id': '290', 'type': 'call', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '292', 'type': 'argument_list', 'children': ['293']},{'id': '293', 'type': 'comparison_operator', 'children': ['294', '295'], 'value': '<'},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'Pdown'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'y2'},{'id': '297', 'type': 'binary_operator', 'children': ['298', '304'], 'value': '*'},{'id': '298', 'type': 'call', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '300', 'type': 'argument_list', 'children': ['301']},{'id': '301', 'type': 'comparison_operator', 'children': ['302', '303'], 'value': '<'},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'Pdown'},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'Pdown'},{'id': '305', 'type': 'expression_statement', 'children': ['306']},{'id': '306', 'type': 'assignment', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'dz'},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'y2'},{'id': '309', 'type': 'expression_statement', 'children': ['310']},{'id': '310', 'type': 'assignment', 'children': ['311', '312']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'dPm'},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'y2'},{'id': '313', 'type': 'if_statement', 'children': ['314', '325']},{'id': '314', 'type': 'comparison_operator', 'children': ['315', '324'], 'value': '>='},{'id': '315', 'type': 'call', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '317', 'type': 'argument_list', 'children': ['318']},{'id': '318', 'type': 'call', 'children': ['319', '320']},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '320', 'type': 'argument_list', 'children': ['321']},{'id': '321', 'type': 'comparison_operator', 'children': ['322', '323'], 'value': '>'},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'z'},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'Pmax'},{'id': '324', 'type': 'integer', 'children': [], 'value': '1'},{'id': '325', 'type': 'block', 'children': ['326']},{'id': '326', 'type': 'expression_statement', 'children': ['327']},{'id': '327', 'type': 'assignment', 'children': ['328', '329']},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'dPm'},{'id': '329', 'type': 'binary_operator', 'children': ['330', '341'], 'value': '+'},{'id': '330', 'type': 'binary_operator', 'children': ['331', '340'], 'value': '*'},{'id': '331', 'type': '()', 'children': ['332']},{'id': '332', 'type': 'binary_operator', 'children': ['333', '334'], 'value': '-'},{'id': '333', 'type': 'integer', 'children': [], 'value': '1'},{'id': '334', 'type': 'call', 'children': ['335', '336']},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '336', 'type': 'argument_list', 'children': ['337']},{'id': '337', 'type': 'comparison_operator', 'children': ['338', '339'], 'value': '>'},{'id': '338', 'type': 'identifier', 'children': [], 'value': 'z'},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'Pmax'},{'id': '340', 'type': 'identifier', 'children': [], 'value': 'dPm'},{'id': '341', 'type': 'binary_operator', 'children': ['342', '348'], 'value': '*'},{'id': '342', 'type': 'call', 'children': ['343', '344']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '344', 'type': 'argument_list', 'children': ['345']},{'id': '345', 'type': 'comparison_operator', 'children': ['346', '347'], 'value': '>'},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'z'},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'Pmax'},{'id': '348', 'type': 'integer', 'children': [], 'value': '0'},{'id': '349', 'type': 'if_statement', 'children': ['350', '361']},{'id': '350', 'type': 'comparison_operator', 'children': ['351', '360'], 'value': '>='},{'id': '351', 'type': 'call', 'children': ['352', '353']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '353', 'type': 'argument_list', 'children': ['354']},{'id': '354', 'type': 'call', 'children': ['355', '356']},{'id': '355', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '356', 'type': 'argument_list', 'children': ['357']},{'id': '357', 'type': 'comparison_operator', 'children': ['358', '359'], 'value': '<'},{'id': '358', 'type': 'identifier', 'children': [], 'value': 'z'},{'id': '359', 'type': 'identifier', 'children': [], 'value': 'Pmin'},{'id': '360', 'type': 'integer', 'children': [], 'value': '1'},{'id': '361', 'type': 'block', 'children': ['362']},{'id': '362', 'type': 'expression_statement', 'children': ['363']},{'id': '363', 'type': 'assignment', 'children': ['364', '365']},{'id': '364', 'type': 'identifier', 'children': [], 'value': 'dPm'},{'id': '365', 'type': 'binary_operator', 'children': ['366', '377'], 'value': '+'},{'id': '366', 'type': 'binary_operator', 'children': ['367', '376'], 'value': '*'},{'id': '367', 'type': '()', 'children': ['368']},{'id': '368', 'type': 'binary_operator', 'children': ['369', '370'], 'value': '-'},{'id': '369', 'type': 'integer', 'children': [], 'value': '1'},{'id': '370', 'type': 'call', 'children': ['371', '372']},{'id': '371', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '372', 'type': 'argument_list', 'children': ['373']},{'id': '373', 'type': 'comparison_operator', 'children': ['374', '375'], 'value': '<'},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'z'},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'Pmin'},{'id': '376', 'type': 'identifier', 'children': [], 'value': 'dPm'},{'id': '377', 'type': 'binary_operator', 'children': ['378', '384'], 'value': '*'},{'id': '378', 'type': 'call', 'children': ['379', '380']},{'id': '379', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'},{'id': '380', 'type': 'argument_list', 'children': ['381']},{'id': '381', 'type': 'comparison_operator', 'children': ['382', '383'], 'value': '<'},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'z'},{'id': '383', 'type': 'identifier', 'children': [], 'value': 'Pmin'},{'id': '384', 'type': 'integer', 'children': [], 'value': '0'},{'id': '385', 'type': 'expression_statement', 'children': ['386']},{'id': '386', 'type': 'assignment', 'children': ['387', '392']},{'id': '387', 'type': 'subscript', 'children': ['388', '389', '390']},{'id': '388', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '390', 'type': 'slice', 'children': ['391']},{'id': '391', 'type': 'colon', 'children': []},{'id': '392', 'type': 'subscript', 'children': ['393', '394', '395', '396', '397']},{'id': '393', 'type': 'identifier', 'children': [], 'value': 'c_'},{'id': '394', 'type': 'identifier', 'children': [], 'value': 'dPm'},{'id': '395', 'type': 'identifier', 'children': [], 'value': 'dP'},{'id': '396', 'type': 'identifier', 'children': [], 'value': 'dx'},{'id': '397', 'type': 'identifier', 'children': [], 'value': 'dz'},{'id': '398', 'type': 'return_statement', 'children': ['399']},{'id': '399', 'type': 'identifier', 'children': [], 'value': 'F'} | def governor(self, Xgov, Pgov, Vgov):
governors = self.governors
omegas = 2 * pi * self.freq
F = zeros(Xgov.shape)
typ1 = [g.generator._i for g in governors if g.model == CONST_POWER]
typ2 = [g.generator._i for g in governors if g.model == GENERAL_IEEE]
F[typ1, 0] = 0
Pm = Xgov[typ2, 0]
P = Xgov[typ2, 1]
x = Xgov[typ2, 2]
z = Xgov[typ2, 3]
K = Pgov[typ2, 0]
T1 = Pgov[typ2, 1]
T2 = Pgov[typ2, 2]
T3 = Pgov[typ2, 3]
Pup = Pgov[typ2, 4]
Pdown = Pgov[typ2, 5]
Pmax = Pgov[typ2, 6]
Pmin = Pgov[typ2, 7]
P0 = Pgov[typ2, 8]
omega = Vgov[typ2, 0]
dx = K * (-1 / T1 * x + (1 - T2 / T1) * (omega - omegas))
dP = 1 / T1 * x + T2 / T1 * (omega - omegas)
y = 1 / T3 * (P0 - P - Pm)
y2 = y
if sum(flatnonzero(y > Pup)) >= 1:
y2 = (1 - flatnonzero(y > Pup)) * y2 + flatnonzero(y > Pup) * Pup
if sum(flatnonzero(y < Pdown)) >= 1:
y2 = (1 - flatnonzero(y<Pdown)) * y2 + flatnonzero(y<Pdown) * Pdown
dz = y2
dPm = y2
if sum(flatnonzero(z > Pmax)) >= 1:
dPm = (1 - flatnonzero(z > Pmax)) * dPm + flatnonzero(z > Pmax) * 0
if sum(flatnonzero(z < Pmin)) >= 1:
dPm = (1 - flatnonzero(z < Pmin)) * dPm + flatnonzero(z < Pmin) * 0
F[typ2, :] = c_[dPm, dP, dx, dz]
return F |
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'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'dyn_generators'},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'omegas'},{'id': '19', 'type': 'binary_operator', 'children': ['20', '23'], 'value': '*'},{'id': '20', 'type': 'binary_operator', 'children': ['21', '22'], 'value': '*'},{'id': '21', 'type': 'integer', 'children': [], 'value': '2'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'freq'},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'Xgen'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'typ1'},{'id': '38', 'type': 'list_comprehension', 'children': ['39', '42', '45']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '41', 'type': 'identifier', 'children': [], 'value': '_i'},{'id': '42', 'type': 'for_in_clause', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '45', 'type': 'if_clause', 'children': ['46']},{'id': '46', 'type': 'comparison_operator', 'children': ['47', '50'], 'value': '=='},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'CLASSICAL'},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '54', 'type': 'list_comprehension', 'children': ['55', '58', '61']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 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'binary_operator', 'children': ['368', '369'], 'value': '-'},{'id': '368', 'type': 'identifier', 'children': [], 'value': 'Efd'},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'Eq_tr'},{'id': '370', 'type': 'binary_operator', 'children': ['371', '375'], 'value': '*'},{'id': '371', 'type': '()', 'children': ['372']},{'id': '372', 'type': 'binary_operator', 'children': ['373', '374'], 'value': '-'},{'id': '373', 'type': 'identifier', 'children': [], 'value': 'xd'},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'xd_tr'},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'Id'},{'id': '376', 'type': 'expression_statement', 'children': ['377']},{'id': '377', 'type': 'assignment', 'children': ['378', '379']},{'id': '378', 'type': 'identifier', 'children': [], 'value': 'dEd'},{'id': '379', 'type': 'binary_operator', 'children': ['380', '383'], 'value': '*'},{'id': '380', 'type': 'binary_operator', 'children': ['381', '382'], 'value': '/'},{'id': '381', 'type': 'integer', 'children': [], 'value': '1'},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'Tq0_tr'},{'id': '383', 'type': '()', 'children': ['384']},{'id': '384', 'type': 'binary_operator', 'children': ['385', '387'], 'value': '-'},{'id': '385', 'type': 'unary_operator', 'children': ['386'], 'value': '-'},{'id': '386', 'type': 'identifier', 'children': [], 'value': 'Ed_tr'},{'id': '387', 'type': 'binary_operator', 'children': ['388', '392'], 'value': '*'},{'id': '388', 'type': '()', 'children': ['389']},{'id': '389', 'type': 'binary_operator', 'children': ['390', '391'], 'value': '-'},{'id': '390', 'type': 'identifier', 'children': [], 'value': 'xq'},{'id': '391', 'type': 'identifier', 'children': [], 'value': 'xq_tr'},{'id': '392', 'type': 'identifier', 'children': [], 'value': 'Iq'},{'id': '393', 'type': 'expression_statement', 'children': ['394']},{'id': '394', 'type': 'assignment', 'children': ['395', '400']},{'id': '395', 'type': 'subscript', 'children': ['396', '397', '398']},{'id': '396', 'type': 'identifier', 'children': [], 'value': 'F'},{'id': '397', 'type': 'identifier', 'children': [], 'value': 'typ2'},{'id': '398', 'type': 'slice', 'children': ['399']},{'id': '399', 'type': 'colon', 'children': []},{'id': '400', 'type': 'subscript', 'children': ['401', '402', '403', '404', '405']},{'id': '401', 'type': 'identifier', 'children': [], 'value': 'c_'},{'id': '402', 'type': 'identifier', 'children': [], 'value': 'ddelta'},{'id': '403', 'type': 'identifier', 'children': [], 'value': 'domega'},{'id': '404', 'type': 'identifier', 'children': [], 'value': 'dEq'},{'id': '405', 'type': 'identifier', 'children': [], 'value': 'dEd'},{'id': '406', 'type': 'return_statement', 'children': ['407']},{'id': '407', 'type': 'identifier', 'children': [], 'value': 'F'} | def generator(self, Xgen, Xexc, Xgov, Vgen):
generators = self.dyn_generators
omegas = 2 * pi * self.freq
F = zeros(Xgen.shape)
typ1 = [g._i for g in generators if g.model == CLASSICAL]
typ2 = [g._i for g in generators if g.model == FOURTH_ORDER]
omega = Xgen[typ1, 1]
Pm0 = Xgov[typ1, 0]
H = array([g.h for g in generators])[typ1]
D = array([g.d for g in generators])[typ1]
Pe = Vgen[typ1, 2]
ddelta = omega = omegas
domega = pi * self.freq / H * (-D * (omega - omegas) + Pm0 - Pe)
dEq = zeros(len(typ1))
F[typ1, :] = c_[ddelta, domega, dEq]
omega = Xgen[typ2, 1]
Eq_tr = Xgen[typ2, 2]
Ed_tr = Xgen[typ2, 3]
H = array([g.h for g in generators])
D = array([g.d for g in generators])
xd = array([g.xd for g in generators])
xq = array([g.xq for g in generators])
xd_tr = array([g.xd_tr for g in generators])
xq_tr = array([g.xq_tr for g in generators])
Td0_tr = array([g.td for g in generators])
Tq0_tr = array([g.tq for g in generators])
Id = Vgen[typ2, 0]
Iq = Vgen[typ2, 1]
Pe = Vgen[typ2, 2]
Efd = Xexc[typ2, 0]
Pm = Xgov[typ2, 0]
ddelta = omega - omegas
domega = pi * self.freq / H * (-D * (omega - omegas) + Pm - Pe)
dEq = 1 / Td0_tr * (Efd - Eq_tr + (xd - xd_tr) * Id)
dEd = 1 / Tq0_tr * (-Ed_tr - (xq - xq_tr) * Iq)
F[typ2, :] = c_[ddelta, domega, dEq, dEd]
return F |
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'list_comprehension', 'children': ['15', '16', '24']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '16', 'type': 'for_in_clause', 'children': ['17', '20']},{'id': '17', 'type': 'pattern_list', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'gn'},{'id': '24', 'type': 'if_clause', 'children': ['25']},{'id': '25', 'type': 'boolean_operator', 'children': ['26', '29'], 'value': 'and'},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'is_load'},{'id': '29', 'type': '()', 'children': ['30']},{'id': '30', 'type': 'boolean_operator', 'children': ['31', '36'], 'value': 'or'},{'id': '31', 'type': 'comparison_operator', 'children': ['32', '35'], 'value': '!='},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'q_min'},{'id': '35', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '36', 'type': 'comparison_operator', 'children': ['37', '40'], 'value': '!='},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'q_max'},{'id': '40', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'vl'},{'id': '44', 'type': 'list_comprehension', 'children': ['45', '48']},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'gn'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '48', 'type': 'for_in_clause', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'ivl'},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'nvl'},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'vl'},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'ng'},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'gn'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'Pg'},{'id': '68', 'type': 'binary_operator', 'children': ['69', '79'], 'value': '/'},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'list_comprehension', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '76', 'type': 'for_in_clause', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'vl'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'base_mva'},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'Qg'},{'id': '83', 'type': 'binary_operator', 'children': ['84', '94'], 'value': '/'},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'list_comprehension', 'children': ['88', '91']},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '91', 'type': 'for_in_clause', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'vl'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'base_mva'},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'Pmin'},{'id': '98', 'type': 'binary_operator', 'children': ['99', '109'], 'value': '/'},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'list_comprehension', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'p_min'},{'id': '106', 'type': 'for_in_clause', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'vl'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'base_mva'},{'id': '110', 'type': 'expression_statement', 'children': ['111']},{'id': '111', 'type': 'assignment', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'Qmin'},{'id': '113', 'type': 'binary_operator', 'children': ['114', '124'], 'value': '/'},{'id': '114', 'type': 'call', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '116', 'type': 'argument_list', 'children': ['117']},{'id': '117', 'type': 'list_comprehension', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'q_min'},{'id': '121', 'type': 'for_in_clause', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'vl'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'base_mva'},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'Qmax'},{'id': '128', 'type': 'binary_operator', 'children': ['129', '139'], 'value': '/'},{'id': '129', 'type': 'call', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '131', 'type': 'argument_list', 'children': ['132']},{'id': '132', 'type': 'list_comprehension', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'q_max'},{'id': '136', 'type': 'for_in_clause', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'vl'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'base_mva'},{'id': '140', 'type': 'for_statement', 'children': ['141', '142', '143']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'vl'},{'id': '143', 'type': 'block', 'children': ['144']},{'id': '144', 'type': 'if_statement', 'children': ['145', '156']},{'id': '145', 'type': 'boolean_operator', 'children': ['146', '151'], 'value': 'and'},{'id': '146', 'type': 'comparison_operator', 'children': ['147', '150'], 'value': '!='},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'qmin'},{'id': '150', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '151', 'type': 'comparison_operator', 'children': ['152', '155'], 'value': '!='},{'id': '152', 'type': 'attribute', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'q_max'},{'id': '155', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '156', 'type': 'block', 'children': ['157']},{'id': '157', 'type': 'expression_statement', 'children': ['158']},{'id': '158', 'type': 'call', 'children': ['159', '162']},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '162', 'type': 'argument_list', 'children': ['163']},{'id': '163', 'type': 'concatenated_string', 'children': ['164', '165']},{'id': '164', 'type': 'string', 'children': [], 'value': '"Either Qmin or Qmax must be equal to zero for "'},{'id': '165', 'type': 'string', 'children': [], 'value': '"each dispatchable load."'},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'Qlim'},{'id': '169', 'type': 'binary_operator', 'children': ['170', '176'], 'value': '+'},{'id': '170', 'type': 'binary_operator', 'children': ['171', '175'], 'value': '*'},{'id': '171', 'type': '()', 'children': ['172']},{'id': '172', 'type': 'comparison_operator', 'children': ['173', '174'], 'value': '=='},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'Qmin'},{'id': '174', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'Qmax'},{'id': '176', 'type': 'binary_operator', 'children': ['177', '181'], 'value': '*'},{'id': '177', 'type': '()', 'children': ['178']},{'id': '178', 'type': 'comparison_operator', 'children': ['179', '180'], 'value': '=='},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'Qmax'},{'id': '180', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'Qmin'},{'id': '182', 'type': 'if_statement', 'children': ['183', '198']},{'id': '183', 'type': 'call', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '185', 'type': 'argument_list', 'children': ['186']},{'id': '186', 'type': 'comparison_operator', 'children': ['187', '197'], 'value': '>'},{'id': '187', 'type': 'call', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '189', 'type': 'argument_list', 'children': ['190']},{'id': '190', 'type': 'binary_operator', 'children': ['191', '192'], 'value': '-'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'Qg'},{'id': '192', 'type': 'binary_operator', 'children': ['193', '196'], 'value': '/'},{'id': '193', 'type': 'binary_operator', 'children': ['194', '195'], 'value': '*'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'Pg'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'Qlim'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'Pmin'},{'id': '197', 'type': 'float', 'children': [], 'value': '1e-6'},{'id': '198', 'type': 'block', 'children': ['199']},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'call', 'children': ['201', '204']},{'id': '201', 'type': 'attribute', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '204', 'type': 'argument_list', 'children': ['205']},{'id': '205', 'type': 'concatenated_string', 'children': ['206', '207', '208']},{'id': '206', 'type': 'string', 'children': [], 'value': '"For a dispatchable load, PG and QG must be "'},{'id': '207', 'type': 'string', 'children': [], 'value': '"consistent with the power factor defined by "'},{'id': '208', 'type': 'string', 'children': [], 'value': '"PMIN and the Q limits."'},{'id': '209', 'type': 'if_statement', 'children': ['210', '213', '298']},{'id': '210', 'type': 'comparison_operator', 'children': ['211', '212'], 'value': '>'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'nvl'},{'id': '212', 'type': 'integer', 'children': [], 'value': '0'},{'id': '213', 'type': 'block', 'children': ['214', '218', '222', '230', '237', '245', '260', '269', '287', '294']},{'id': '214', 'type': 'expression_statement', 'children': ['215']},{'id': '215', 'type': 'assignment', 'children': ['216', '217']},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'xx'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'Pmin'},{'id': '218', 'type': 'expression_statement', 'children': ['219']},{'id': '219', 'type': 'assignment', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'yy'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'Qlim'},{'id': '222', 'type': 'expression_statement', 'children': ['223']},{'id': '223', 'type': 'assignment', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'pftheta'},{'id': '225', 'type': 'call', 'children': ['226', '227']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'arctan2'},{'id': '227', 'type': 'argument_list', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'yy'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'xx'},{'id': '230', 'type': 'expression_statement', 'children': ['231']},{'id': '231', 'type': 'assignment', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'pc'},{'id': '233', 'type': 'call', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'sin'},{'id': '235', 'type': 'argument_list', 'children': ['236']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'pftheta'},{'id': '237', 'type': 'expression_statement', 'children': ['238']},{'id': '238', 'type': 'assignment', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'qc'},{'id': '240', 'type': 'unary_operator', 'children': ['241'], 'value': '-'},{'id': '241', 'type': 'call', 'children': ['242', '243']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'cos'},{'id': '243', 'type': 'argument_list', 'children': ['244']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'pftheta'},{'id': '245', 'type': 'expression_statement', 'children': ['246']},{'id': '246', 'type': 'assignment', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'ii'},{'id': '248', 'type': 'call', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '250', 'type': 'argument_list', 'children': ['251']},{'id': '251', 'type': 'list', 'children': ['252', '256'], 'value': '[range(nvl), range(nvl)]'},{'id': '252', 'type': 'call', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '254', 'type': 'argument_list', 'children': ['255']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'nvl'},{'id': '256', 'type': 'call', 'children': ['257', '258']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '258', 'type': 'argument_list', 'children': ['259']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'nvl'},{'id': '260', 'type': 'expression_statement', 'children': ['261']},{'id': '261', 'type': 'assignment', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'jj'},{'id': '263', 'type': 'subscript', 'children': ['264', '265', '266']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'r_'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'ivl'},{'id': '266', 'type': 'binary_operator', 'children': ['267', '268'], 'value': '+'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'ivl'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'ng'},{'id': '269', 'type': 'expression_statement', 'children': ['270']},{'id': '270', 'type': 'assignment', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'Avl'},{'id': '272', 'type': 'call', 'children': ['273', '274']},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'csr_matrix'},{'id': '274', 'type': 'argument_list', 'children': ['275', '279', '282']},{'id': '275', 'type': 'subscript', 'children': ['276', '277', '278']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'r_'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'pc'},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'qc'},{'id': '279', 'type': 'tuple', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'ii'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'jj'},{'id': '282', 'type': 'tuple', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'nvl'},{'id': '284', 'type': 'binary_operator', 'children': ['285', '286'], 'value': '*'},{'id': '285', 'type': 'integer', 'children': [], 'value': '2'},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'ng'},{'id': '287', 'type': 'expression_statement', 'children': ['288']},{'id': '288', 'type': 'assignment', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'lvl'},{'id': '290', 'type': 'call', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '292', 'type': 'argument_list', 'children': ['293']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'nvl'},{'id': '294', 'type': 'expression_statement', 'children': ['295']},{'id': '295', 'type': 'assignment', 'children': ['296', '297']},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'uvl'},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'lvl'},{'id': '298', 'type': 'else_clause', 'children': ['299']},{'id': '299', 'type': 'block', 'children': ['300', '311', '318']},{'id': '300', 'type': 'expression_statement', 'children': ['301']},{'id': '301', 'type': 'assignment', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'Avl'},{'id': '303', 'type': 'call', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '305', 'type': 'argument_list', 'children': ['306']},{'id': '306', 'type': 'tuple', 'children': ['307', '308']},{'id': '307', 'type': 'integer', 'children': [], 'value': '0'},{'id': '308', 'type': 'binary_operator', 'children': ['309', '310'], 'value': '*'},{'id': '309', 'type': 'integer', 'children': [], 'value': '2'},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'ng'},{'id': '311', 'type': 'expression_statement', 'children': ['312']},{'id': '312', 'type': 'assignment', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'lvl'},{'id': '314', 'type': 'call', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '316', 'type': 'argument_list', 'children': ['317']},{'id': '317', 'type': 'list', 'children': [], 'value': '[]'},{'id': '318', 'type': 'expression_statement', 'children': ['319']},{'id': '319', 'type': 'assignment', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'uvl'},{'id': '321', 'type': 'call', 'children': ['322', '323']},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '323', 'type': 'argument_list', 'children': ['324']},{'id': '324', 'type': 'list', 'children': [], 'value': '[]'},{'id': '325', 'type': 'return_statement', 'children': ['326']},{'id': '326', 'type': 'call', 'children': ['327', '328']},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'LinearConstraint'},{'id': '328', 'type': 'argument_list', 'children': ['329', '330', '331', '332', '333']},{'id': '329', 'type': 'string', 'children': [], 'value': '"vl"'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'Avl'},{'id': '331', 'type': 'identifier', 'children': [], 'value': 'lvl'},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'uvl'},{'id': '333', 'type': 'list', 'children': ['334', '335'], 'value': '["Pg", "Qg"]'},{'id': '334', 'type': 'string', 'children': [], 'value': '"Pg"'},{'id': '335', 'type': 'string', 'children': [], 'value': '"Qg"'} | def _const_pf_constraints(self, gn, base_mva):
ivl = array([i for i, g in enumerate(gn)
if g.is_load and (g.q_min != 0.0 or g.q_max != 0.0)])
vl = [gn[i] for i in ivl]
nvl = len(vl)
ng = len(gn)
Pg = array([g.p for g in vl]) / base_mva
Qg = array([g.q for g in vl]) / base_mva
Pmin = array([g.p_min for g in vl]) / base_mva
Qmin = array([g.q_min for g in vl]) / base_mva
Qmax = array([g.q_max for g in vl]) / base_mva
for g in vl:
if g.qmin != 0.0 and g.q_max != 0.0:
logger.error("Either Qmin or Qmax must be equal to zero for "
"each dispatchable load.")
Qlim = (Qmin == 0.0) * Qmax + (Qmax == 0.0) * Qmin
if any( abs(Qg - Pg * Qlim / Pmin) > 1e-6 ):
logger.error("For a dispatchable load, PG and QG must be "
"consistent with the power factor defined by "
"PMIN and the Q limits.")
if nvl > 0:
xx = Pmin
yy = Qlim
pftheta = arctan2(yy, xx)
pc = sin(pftheta)
qc = -cos(pftheta)
ii = array([range(nvl), range(nvl)])
jj = r_[ivl, ivl + ng]
Avl = csr_matrix(r_[pc, qc], (ii, jj), (nvl, 2 * ng))
lvl = zeros(nvl)
uvl = lvl
else:
Avl = zeros((0, 2 * ng))
lvl = array([])
uvl = array([])
return LinearConstraint("vl", Avl, lvl, uvl, ["Pg", "Qg"]) |
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'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'branches'},{'id': '34', 'type': 'if_clause', 'children': ['35']},{'id': '35', 'type': 'boolean_operator', 'children': ['36', '48'], 'value': 'or'},{'id': '36', 'type': '()', 'children': ['37']},{'id': '37', 'type': 'boolean_operator', 'children': ['38', '41'], 'value': 'and'},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'ang_min'},{'id': '41', 'type': '()', 'children': ['42']},{'id': '42', 'type': 'comparison_operator', 'children': ['43', '46'], 'value': '>'},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'ang_min'},{'id': '46', 'type': 'unary_operator', 'children': ['47'], 'value': '-'},{'id': '47', 'type': 'float', 'children': [], 'value': '360.0'},{'id': '48', 'type': '()', 'children': ['49']},{'id': '49', 'type': 'boolean_operator', 'children': ['50', '53'], 'value': 'and'},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'ang_max'},{'id': '53', 'type': '()', 'children': ['54']},{'id': '54', 'type': 'comparison_operator', 'children': ['55', '58'], 'value': '<'},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'ang_max'},{'id': '58', 'type': 'float', 'children': [], 'value': '360.0'},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'iangl'},{'id': '62', 'type': 'subscript', 'children': ['63', '82']},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'list_comprehension', 'children': ['67', '68', '76']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '68', 'type': 'for_in_clause', 'children': ['69', '72']},{'id': '69', 'type': 'pattern_list', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '72', 'type': 'call', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '74', 'type': 'argument_list', 'children': ['75']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'branches'},{'id': '76', 'type': 'if_clause', 'children': ['77']},{'id': '77', 'type': 'comparison_operator', 'children': ['78', '81'], 'value': 'is'},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'ang_min'},{'id': '81', 'type': 'None', 'children': []},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'iang'},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'assignment', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'iangh'},{'id': '86', 'type': 'subscript', 'children': ['87', '106']},{'id': '87', 'type': 'call', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'list_comprehension', 'children': ['91', '92', '100']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '92', 'type': 'for_in_clause', 'children': ['93', '96']},{'id': '93', 'type': 'pattern_list', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'branches'},{'id': '100', 'type': 'if_clause', 'children': ['101']},{'id': '101', 'type': 'comparison_operator', 'children': ['102', '105'], 'value': 'is'},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'ang_max'},{'id': '105', 'type': 'None', 'children': []},{'id': '106', 'type': 'identifier', 'children': [], 'value': 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'identifier', 'children': [], 'value': 'array'},{'id': '137', 'type': 'argument_list', 'children': ['138']},{'id': '138', 'type': 'list_comprehension', 'children': ['139', '144']},{'id': '139', 'type': 'attribute', 'children': ['140', '143']},{'id': '140', 'type': 'attribute', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'from_bus'},{'id': '143', 'type': 'identifier', 'children': [], 'value': '_i'},{'id': '144', 'type': 'for_in_clause', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'branches'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'iang'},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'assignment', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'jjt'},{'id': '151', 'type': 'subscript', 'children': ['152', '164']},{'id': '152', 'type': 'call', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '154', 'type': 'argument_list', 'children': ['155']},{'id': '155', 'type': 'list_comprehension', 'children': ['156', '161']},{'id': '156', 'type': 'attribute', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'to_bus'},{'id': '160', 'type': 'identifier', 'children': [], 'value': '_i'},{'id': '161', 'type': 'for_in_clause', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'branches'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'iang'},{'id': '165', 'type': 'expression_statement', 'children': ['166']},{'id': '166', 'type': 'assignment', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'jj'},{'id': '168', 'type': 'subscript', 'children': ['169', '170', '171']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'r_'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'jjf'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'jjt'},{'id': '172', 'type': 'expression_statement', 'children': ['173']},{'id': '173', 'type': 'assignment', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'Aang'},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'csr_matrix'},{'id': '177', 'type': 'argument_list', 'children': ['178', '189']},{'id': '178', 'type': 'subscript', 'children': ['179', '180', '184']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'r_'},{'id': '180', 'type': 'call', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'ones'},{'id': '182', 'type': 'argument_list', 'children': ['183']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'nang'},{'id': '184', 'type': 'unary_operator', 'children': ['185'], 'value': '-'},{'id': '185', 'type': 'call', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'ones'},{'id': '187', 'type': 'argument_list', 'children': ['188']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'nang'},{'id': '189', 'type': 'tuple', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'ii'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'jj'},{'id': '192', 'type': 'expression_statement', 'children': ['193']},{'id': '193', 'type': 'assignment', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'uang'},{'id': '195', 'type': 'binary_operator', 'children': ['196', '197'], 'value': '*'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'Inf'},{'id': '197', 'type': 'call', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'ones'},{'id': '199', 'type': 'argument_list', 'children': ['200']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'nang'},{'id': '201', 'type': 'expression_statement', 'children': ['202']},{'id': '202', 'type': 'assignment', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '204', 'type': 'unary_operator', 'children': ['205'], 'value': '-'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'uang'},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'assignment', 'children': ['208', '211']},{'id': '208', 'type': 'subscript', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'iangl'},{'id': '211', 'type': 'subscript', 'children': ['212', '227']},{'id': '212', 'type': 'call', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '214', 'type': 'argument_list', 'children': ['215']},{'id': '215', 'type': 'list_comprehension', 'children': ['216', '224']},{'id': '216', 'type': 'binary_operator', 'children': ['217', '220'], 'value': '*'},{'id': '217', 'type': 'attribute', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'ang_min'},{'id': '220', 'type': '()', 'children': ['221']},{'id': '221', 'type': 'binary_operator', 'children': ['222', '223'], 'value': '/'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '223', 'type': 'float', 'children': [], 'value': '180.0'},{'id': '224', 'type': 'for_in_clause', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'branches'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'iangl'},{'id': '228', 'type': 'expression_statement', 'children': ['229']},{'id': '229', 'type': 'assignment', 'children': ['230', '233']},{'id': '230', 'type': 'subscript', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'uang'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'iangh'},{'id': '233', 'type': 'subscript', 'children': ['234', '249']},{'id': '234', 'type': 'call', 'children': ['235', '236']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '236', 'type': 'argument_list', 'children': ['237']},{'id': '237', 'type': 'list_comprehension', 'children': ['238', '246']},{'id': '238', 'type': 'binary_operator', 'children': ['239', '242'], 'value': '*'},{'id': '239', 'type': 'attribute', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'ang_max'},{'id': '242', 'type': '()', 'children': ['243']},{'id': '243', 'type': 'binary_operator', 'children': ['244', '245'], 'value': '/'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '245', 'type': 'float', 'children': [], 'value': '180.0'},{'id': '246', 'type': 'for_in_clause', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'branches'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'iangh'},{'id': '250', 'type': 'else_clause', 'children': ['251']},{'id': '251', 'type': 'block', 'children': ['252', '261', '268']},{'id': '252', 'type': 'expression_statement', 'children': ['253']},{'id': '253', 'type': 'assignment', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'Aang'},{'id': '255', 'type': 'call', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '257', 'type': 'argument_list', 'children': ['258']},{'id': '258', 'type': 'tuple', 'children': ['259', '260']},{'id': '259', 'type': 'integer', 'children': [], 'value': '0'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'nb'},{'id': '261', 'type': 'expression_statement', 'children': ['262']},{'id': '262', 'type': 'assignment', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '264', 'type': 'call', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '266', 'type': 'argument_list', 'children': ['267']},{'id': '267', 'type': 'list', 'children': [], 'value': '[]'},{'id': '268', 'type': 'expression_statement', 'children': ['269']},{'id': '269', 'type': 'assignment', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'uang'},{'id': '271', 'type': 'call', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '273', 'type': 'argument_list', 'children': ['274']},{'id': '274', 'type': 'list', 'children': [], 'value': '[]'},{'id': '275', 'type': 'else_clause', 'children': ['276']},{'id': '276', 'type': 'block', 'children': ['277', '286', '293']},{'id': '277', 'type': 'expression_statement', 'children': ['278']},{'id': '278', 'type': 'assignment', 'children': ['279', '280']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'Aang'},{'id': '280', 'type': 'call', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '282', 'type': 'argument_list', 'children': ['283']},{'id': '283', 'type': 'tuple', 'children': ['284', '285']},{'id': '284', 'type': 'integer', 'children': [], 'value': '0'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'nb'},{'id': '286', 'type': 'expression_statement', 'children': ['287']},{'id': '287', 'type': 'assignment', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '289', 'type': 'call', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '291', 'type': 'argument_list', 'children': ['292']},{'id': '292', 'type': 'list', 'children': [], 'value': '[]'},{'id': '293', 'type': 'expression_statement', 'children': ['294']},{'id': '294', 'type': 'assignment', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'uang'},{'id': '296', 'type': 'call', 'children': ['297', '298']},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '298', 'type': 'argument_list', 'children': ['299']},{'id': '299', 'type': 'list', 'children': [], 'value': '[]'},{'id': '300', 'type': 'return_statement', 'children': ['301']},{'id': '301', 'type': 'call', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'LinearConstraint'},{'id': '303', 'type': 'argument_list', 'children': ['304', '305', '306', '307', '308']},{'id': '304', 'type': 'string', 'children': [], 'value': '"ang"'},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'Aang'},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'lang'},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'uang'},{'id': '308', 'type': 'list', 'children': ['309'], 'value': '["Va"]'},{'id': '309', 'type': 'string', 'children': [], 'value': '"Va"'} | def _voltage_angle_diff_limit(self, buses, branches):
nb = len(buses)
if not self.ignore_ang_lim:
iang = [i for i, b in enumerate(branches)
if (b.ang_min and (b.ang_min > -360.0))
or (b.ang_max and (b.ang_max < 360.0))]
iangl = array([i for i, b in enumerate(branches)
if b.ang_min is not None])[iang]
iangh = array([i for i, b in enumerate(branches)
if b.ang_max is not None])[iang]
nang = len(iang)
if nang > 0:
ii = range(nang) + range(nang)
jjf = array([b.from_bus._i for b in branches])[iang]
jjt = array([b.to_bus._i for b in branches])[iang]
jj = r_[jjf, jjt]
Aang = csr_matrix(r_[ones(nang), -ones(nang)], (ii, jj))
uang = Inf * ones(nang)
lang = -uang
lang[iangl] = array([b.ang_min * (pi / 180.0)
for b in branches])[iangl]
uang[iangh] = array([b.ang_max * (pi / 180.0)
for b in branches])[iangh]
else:
Aang = zeros((0, nb))
lang = array([])
uang = array([])
else:
Aang = zeros((0, nb))
lang = array([])
uang = array([])
return LinearConstraint("ang", Aang, lang, uang, ["Va"]) |
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'identifier', 'children': [], 'value': 'offers'},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'if_statement', 'children': ['18', '29']},{'id': '18', 'type': 'boolean_operator', 'children': ['19', '22'], 'value': 'and'},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'offer'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'accepted'},{'id': '22', 'type': 'comparison_operator', 'children': ['23', '26'], 'value': '<'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'offer'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'clearedPrice'},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'offer'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'price'},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'offer'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'clearedPrice'},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'offer'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'price'},{'id': '38', 'type': 'if_statement', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'guaranteeBidPrice'},{'id': '42', 'type': 'block', 'children': ['43']},{'id': '43', 'type': 'for_statement', 'children': ['44', '45', '48']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'bids'},{'id': '48', 'type': 'block', 'children': ['49']},{'id': '49', 'type': 'if_statement', 'children': ['50', '61']},{'id': '50', 'type': 'boolean_operator', 'children': ['51', '54'], 'value': 'and'},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'accepted'},{'id': '54', 'type': 'comparison_operator', 'children': ['55', '58'], 'value': '>'},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'clearedPrice'},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'price'},{'id': '61', 'type': 'block', 'children': ['62']},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'assignment', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'clearedPrice'},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'price'},{'id': '70', 'type': 'if_statement', 'children': ['71', '79']},{'id': '71', 'type': 'call', 'children': ['72', '77']},{'id': '72', 'type': 'attribute', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'limits'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'has_key'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'string', 'children': [], 'value': '"maxClearedOffer"'},{'id': '79', 'type': 'block', 'children': ['80', '88']},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'maxClearedOffer'},{'id': '83', 'type': 'subscript', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'limits'},{'id': '87', 'type': 'string', 'children': [], 'value': '"maxClearedOffer"'},{'id': '88', 'type': 'for_statement', 'children': ['89', '90', '93']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'offer'},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'offers'},{'id': '93', 'type': 'block', 'children': ['94']},{'id': '94', 'type': 'if_statement', 'children': ['95', '100']},{'id': '95', 'type': 'comparison_operator', 'children': ['96', '99'], 'value': '>'},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'offer'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'clearedPrice'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'maxClearedOffer'},{'id': '100', 'type': 'block', 'children': ['101']},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'assignment', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'offer'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'clearedPrice'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'maxClearedOffer'},{'id': '107', 'type': 'if_statement', 'children': ['108', '116']},{'id': '108', 'type': 'call', 'children': ['109', '114']},{'id': '109', 'type': 'attribute', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'limits'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'has_key'},{'id': '114', 'type': 'argument_list', 'children': ['115']},{'id': '115', 'type': 'string', 'children': [], 'value': '"minClearedBid"'},{'id': '116', 'type': 'block', 'children': ['117', '125']},{'id': '117', 'type': 'expression_statement', 'children': ['118']},{'id': '118', 'type': 'assignment', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'minClearedBid'},{'id': '120', 'type': 'subscript', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'limits'},{'id': '124', 'type': 'string', 'children': [], 'value': '"minClearedBid"'},{'id': '125', 'type': 'for_statement', 'children': ['126', '127', '130']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'bids'},{'id': '130', 'type': 'block', 'children': ['131']},{'id': '131', 'type': 'if_statement', 'children': ['132', '137']},{'id': '132', 'type': 'comparison_operator', 'children': ['133', '136'], 'value': '<'},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 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'149', 'type': 'identifier', 'children': [], 'value': 'DISCRIMINATIVE'},{'id': '150', 'type': 'block', 'children': ['151']},{'id': '151', 'type': 'for_statement', 'children': ['152', '153', '158']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '153', 'type': 'attribute', 'children': ['154', '157']},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'case'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'generators'},{'id': '158', 'type': 'block', 'children': ['159', '175', '201', '217']},{'id': '159', 'type': 'expression_statement', 'children': ['160']},{'id': '160', 'type': 'assignment', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'gOffers'},{'id': '162', 'type': 'list_comprehension', 'children': ['163', '164', '169']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'of'},{'id': '164', 'type': 'for_in_clause', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'of'},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'offers'},{'id': '169', 'type': 'if_clause', 'children': ['170']},{'id': '170', 'type': 'comparison_operator', 'children': ['171', '174'], 'value': '=='},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'of'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'generator'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '175', 'type': 'if_statement', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'gOffers'},{'id': '177', 'type': 'block', 'children': ['178', '191']},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'assignment', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'uniformPrice'},{'id': '181', 'type': 'call', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '183', 'type': 'argument_list', 'children': ['184']},{'id': '184', 'type': 'list_comprehension', 'children': ['185', '188']},{'id': '185', 'type': 'attribute', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'of'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'clearedPrice'},{'id': '188', 'type': 'for_in_clause', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'of'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'gOffers'},{'id': '191', 'type': 'for_statement', 'children': ['192', '193', '194']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 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'children': [], 'value': 'bid'},{'id': '208', 'type': 'attribute', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'bids'},{'id': '211', 'type': 'if_clause', 'children': ['212']},{'id': '212', 'type': 'comparison_operator', 'children': ['213', '216'], 'value': '=='},{'id': '213', 'type': 'attribute', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'vLoad'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '217', 'type': 'if_statement', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'gBids'},{'id': '219', 'type': 'block', 'children': ['220', '233']},{'id': '220', 'type': 'expression_statement', 'children': ['221']},{'id': '221', 'type': 'assignment', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'uniformPrice'},{'id': '223', 'type': 'call', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '225', 'type': 'argument_list', 'children': ['226']},{'id': '226', 'type': 'list_comprehension', 'children': ['227', '230']},{'id': '227', 'type': 'attribute', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'cleared_price'},{'id': '230', 'type': 'for_in_clause', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'gBids'},{'id': '233', 'type': 'for_statement', 'children': ['234', '235', '236']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'gBids'},{'id': '236', 'type': 'block', 'children': ['237']},{'id': '237', 'type': 'expression_statement', 'children': ['238']},{'id': '238', 'type': 'assignment', 'children': ['239', '242']},{'id': '239', 'type': 'attribute', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'bid'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'clearedPrice'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'uniformPrice'} | def _clipPrices(self):
if self.guaranteeOfferPrice:
for offer in self.offers:
if offer.accepted and offer.clearedPrice < offer.price:
offer.clearedPrice = offer.price
if self.guaranteeBidPrice:
for bid in self.bids:
if bid.accepted and bid.clearedPrice > bid.price:
bid.clearedPrice = bid.price
if self.limits.has_key("maxClearedOffer"):
maxClearedOffer = self.limits["maxClearedOffer"]
for offer in self.offers:
if offer.clearedPrice > maxClearedOffer:
offer.clearedPrice = maxClearedOffer
if self.limits.has_key("minClearedBid"):
minClearedBid = self.limits["minClearedBid"]
for bid in self.bids:
if bid.clearedPrice < minClearedBid:
bid.clearedPrice = minClearedBid
if self.auctionType != DISCRIMINATIVE:
for g in self.case.generators:
gOffers = [of for of in self.offers if of.generator == g]
if gOffers:
uniformPrice = max([of.clearedPrice for of in gOffers])
for of in gOffers:
of.clearedPrice = uniformPrice
gBids = [bid for bid in self.bids if bid.vLoad == g]
if gBids:
uniformPrice = min([bid.cleared_price for bid in gBids])
for bid in gBids:
bid.clearedPrice = uniformPrice |
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'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'gpuarray'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'to_gpu_async'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'wavelet_filter'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'detail_coeffs'},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'gpuarray'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'empty'},{'id': '56', 'type': 'argument_list', 'children': ['57', '71']},{'id': '57', 'type': 'list', 'children': ['58', '61', '66'], 'value': 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'type': 'identifier', 'children': [], 'value': 'gpu_out2'},{'id': '119', 'type': 'call', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'gpuarray'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'empty_like'},{'id': '123', 'type': 'argument_list', 'children': ['124']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'gpu_in1'},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'gpu_scale'},{'id': '128', 'type': 'call', 'children': ['129', '132']},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'gpuarray'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '132', 'type': 'argument_list', 'children': ['133', 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'store_smoothed'},{'id': '388', 'type': 'block', 'children': ['389']},{'id': '389', 'type': 'return_statement', 'children': ['390']},{'id': '390', 'type': 'expression_list', 'children': ['391', '396']},{'id': '391', 'type': 'call', 'children': ['392', '395']},{'id': '392', 'type': 'attribute', 'children': ['393', '394']},{'id': '393', 'type': 'identifier', 'children': [], 'value': 'detail_coeffs'},{'id': '394', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '395', 'type': 'argument_list', 'children': []},{'id': '396', 'type': 'call', 'children': ['397', '400']},{'id': '397', 'type': 'attribute', 'children': ['398', '399']},{'id': '398', 'type': 'identifier', 'children': [], 'value': 'gpu_in1'},{'id': '399', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '400', 'type': 'argument_list', 'children': []},{'id': '401', 'type': 'else_clause', 'children': ['402']},{'id': '402', 'type': 'block', 'children': ['403']},{'id': '403', 'type': 'return_statement', 'children': ['404']},{'id': '404', 'type': 'call', 'children': ['405', '408']},{'id': '405', 'type': 'attribute', 'children': ['406', '407']},{'id': '406', 'type': 'identifier', 'children': [], 'value': 'detail_coeffs'},{'id': '407', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '408', 'type': 'argument_list', 'children': []} | def gpu_iuwt_decomposition(in1, scale_count, scale_adjust, store_smoothed, store_on_gpu):
ker = SourceModule(
)
wavelet_filter = (1./16)*np.array([1,4,6,4,1], dtype=np.float32)
wavelet_filter = gpuarray.to_gpu_async(wavelet_filter)
detail_coeffs = gpuarray.empty([scale_count-scale_adjust, in1.shape[0], in1.shape[1]], np.float32)
try:
gpu_in1 = gpuarray.to_gpu_async(in1.astype(np.float32))
except:
gpu_in1 = in1
gpu_tmp = gpuarray.empty_like(gpu_in1)
gpu_out1 = gpuarray.empty_like(gpu_in1)
gpu_out2 = gpuarray.empty_like(gpu_in1)
gpu_scale = gpuarray.zeros([1], np.int32)
gpu_adjust = gpuarray.zeros([1], np.int32)
gpu_adjust += scale_adjust
gpu_a_trous_row_kernel, gpu_a_trous_col_kernel = gpu_a_trous()
gpu_store_detail_coeffs = ker.get_function("gpu_store_detail_coeffs")
grid_rows = int(in1.shape[0]//32)
grid_cols = int(in1.shape[1]//32)
if scale_adjust>0:
for i in range(0, scale_adjust):
gpu_a_trous_row_kernel(gpu_in1, gpu_tmp, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
gpu_a_trous_col_kernel(gpu_tmp, gpu_out1, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
gpu_in1, gpu_out1 = gpu_out1, gpu_in1
gpu_scale += 1
for i in range(scale_adjust, scale_count):
gpu_a_trous_row_kernel(gpu_in1, gpu_tmp, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
gpu_a_trous_col_kernel(gpu_tmp, gpu_out1, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
gpu_a_trous_row_kernel(gpu_out1, gpu_tmp, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
gpu_a_trous_col_kernel(gpu_tmp, gpu_out2, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
gpu_store_detail_coeffs(gpu_in1, gpu_out2, detail_coeffs, gpu_scale, gpu_adjust,
block=(32,32,1), grid=(grid_cols, grid_rows, int(scale_count)))
gpu_in1, gpu_out1 = gpu_out1, gpu_in1
gpu_scale += 1
if store_on_gpu:
return detail_coeffs
elif store_smoothed:
return detail_coeffs.get(), gpu_in1.get()
else:
return detail_coeffs.get() |
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'block', 'children': ['321']},{'id': '321', 'type': 'return_statement', 'children': ['322']},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'recomposition'},{'id': '323', 'type': 'else_clause', 'children': ['324']},{'id': '324', 'type': 'block', 'children': ['325']},{'id': '325', 'type': 'return_statement', 'children': ['326']},{'id': '326', 'type': 'call', 'children': ['327', '330']},{'id': '327', 'type': 'attribute', 'children': ['328', '329']},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'recomposition'},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '330', 'type': 'argument_list', 'children': []} | def gpu_iuwt_recomposition(in1, scale_adjust, store_on_gpu, smoothed_array):
wavelet_filter = (1./16)*np.array([1,4,6,4,1], dtype=np.float32)
wavelet_filter = gpuarray.to_gpu_async(wavelet_filter)
max_scale = in1.shape[0] + scale_adjust
if smoothed_array is None:
recomposition = gpuarray.zeros([in1.shape[1], in1.shape[2]], np.float32)
else:
recomposition = gpuarray.to_gpu(smoothed_array.astype(np.float32))
try:
gpu_in1 = gpuarray.to_gpu_async(in1.astype(np.float32))
except:
gpu_in1 = in1
gpu_tmp = gpuarray.empty_like(recomposition)
gpu_scale = gpuarray.zeros([1], np.int32)
gpu_scale += max_scale-1
gpu_a_trous_row_kernel, gpu_a_trous_col_kernel = gpu_a_trous()
grid_rows = int(in1.shape[1]//32)
grid_cols = int(in1.shape[2]//32)
for i in range(max_scale-1, scale_adjust-1, -1):
gpu_a_trous_row_kernel(recomposition, gpu_tmp, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
gpu_a_trous_col_kernel(gpu_tmp, recomposition, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
recomposition = recomposition[:,:] + gpu_in1[i-scale_adjust,:,:]
gpu_scale -= 1
if scale_adjust>0:
for i in range(scale_adjust-1, -1, -1):
gpu_a_trous_row_kernel(recomposition, gpu_tmp, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
gpu_a_trous_col_kernel(gpu_tmp, recomposition, wavelet_filter, gpu_scale,
block=(32,32,1), grid=(grid_cols, grid_rows))
gpu_scale -= 1
if store_on_gpu:
return recomposition
else:
return recomposition.get() |
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'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'combination'},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '38', 'type': 'argument_list', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'variables'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'entries'},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'include'},{'id': '44', 'type': 'True', 'children': []},{'id': '45', 'type': 'for_statement', 'children': ['46', '47', '52']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'combination'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '51', 'type': 'argument_list', 'children': []},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'for_statement', 'children': ['54', '55', '58']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'reducer'},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'reducers'},{'id': '58', 'type': 'block', 'children': ['59', '95']},{'id': '59', 'type': 'if_statement', 'children': ['60', '65', '77']},{'id': '60', 'type': 'comparison_operator', 'children': ['61', '64'], 'value': '=='},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'reducer'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '64', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '69', 'type': 'not_operator', 'children': ['70']},{'id': '70', 'type': 'attribute', 'children': ['71', '76']},{'id': '71', 'type': 'subscript', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'combination'},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'reducer'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'variable'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '77', 'type': 'else_clause', 'children': ['78']},{'id': '78', 'type': 'block', 'children': ['79']},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'fnmatch'},{'id': '84', 'type': 'argument_list', 'children': ['85', '92']},{'id': '85', 'type': 'attribute', 'children': ['86', '91']},{'id': '86', 'type': 'subscript', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'combination'},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'reducer'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'variable'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'reducer'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '95', 'type': 'if_statement', 'children': ['96', '103']},{'id': '96', 'type': 'conditional_expression', 'children': ['97', '98', '101'], 'value': 'if'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'reducer'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'is_exclude'},{'id': '101', 'type': 'not_operator', 'children': ['102']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '103', 'type': 'block', 'children': ['104']},{'id': '104', 'type': 'expression_statement', 'children': ['105']},{'id': '105', 'type': 'assignment', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'include'},{'id': '107', 'type': 'False', 'children': []},{'id': '108', 'type': 'if_statement', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'include'},{'id': '110', 'type': 'block', 'children': ['111', '129', '146', '166']},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'assignment', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '118', 'type': 'generator_expression', 'children': ['119', '122', '125']},{'id': '119', 'type': 'attribute', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'alias'},{'id': '122', 'type': 'for_in_clause', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'entries'},{'id': '125', 'type': 'if_clause', 'children': ['126']},{'id': '126', 'type': 'attribute', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'alias'},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '132', 'type': 'call', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '134', 'type': 'argument_list', 'children': ['135']},{'id': '135', 'type': 'call', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '137', 'type': 'argument_list', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'variables'},{'id': '139', 'type': 'generator_expression', 'children': ['140', '143']},{'id': '140', 'type': 'attribute', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '143', 'type': 'for_in_clause', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'entries'},{'id': '146', 'type': 'if_statement', 'children': ['147', '156']},{'id': '147', 'type': 'boolean_operator', 'children': ['148', '151'], 'value': 'and'},{'id': '148', 'type': 'comparison_operator', 'children': ['149', '150'], 'value': 'in'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'matrix'},{'id': '151', 'type': 'comparison_operator', 'children': ['152', '153'], 'value': '!='},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '153', 'type': 'subscript', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'matrix'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '156', 'type': 'block', 'children': ['157']},{'id': '157', 'type': 'raise_statement', 'children': ['158']},{'id': '158', 'type': 'call', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'DuplicateEnvironment'},{'id': '160', 'type': 'argument_list', 'children': ['161', '162', '163']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '163', 'type': 'subscript', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'matrix'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '171']},{'id': '168', 'type': 'subscript', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'matrix'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '172', 'type': 'return_statement', 'children': ['173']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'matrix'} | def from_config(config):
matrix = {}
variables = config.keys()
for entries in product(*config.values()):
combination = dict(zip(variables, entries))
include = True
for value in combination.values():
for reducer in value.reducers:
if reducer.pattern == '-':
match = not combination[reducer.variable].value
else:
match = fnmatch(combination[reducer.variable].value, reducer.pattern)
if match if reducer.is_exclude else not match:
include = False
if include:
key = '-'.join(entry.alias for entry in entries if entry.alias)
data = dict(
zip(variables, (entry.value for entry in entries))
)
if key in matrix and data != matrix[key]:
raise DuplicateEnvironment(key, data, matrix[key])
matrix[key] = data
return matrix |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '71']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'moresane_by_scale'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26', '29', '32', '35', '38', '41', '44', '47', '50', '53', '56', '59', '62', '65', '68']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'start_scale'},{'id': '7', 'type': 'integer', 'children': [], 'value': '1'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'stop_scale'},{'id': '10', 'type': 'integer', 'children': [], 'value': '20'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'subregion'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'sigma_level'},{'id': '16', 'type': 'integer', 'children': [], 'value': '4'},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'loop_gain'},{'id': '19', 'type': 'float', 'children': [], 'value': '0.1'},{'id': '20', 'type': 'default_parameter', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'tolerance'},{'id': '22', 'type': 'float', 'children': [], 'value': '0.75'},{'id': '23', 'type': 'default_parameter', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'accuracy'},{'id': '25', 'type': 'float', 'children': [], 'value': '1e-6'},{'id': '26', 'type': 'default_parameter', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'major_loop_miter'},{'id': '28', 'type': 'integer', 'children': [], 'value': '100'},{'id': '29', 'type': 'default_parameter', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'minor_loop_miter'},{'id': '31', 'type': 'integer', 'children': [], 'value': '30'},{'id': '32', 'type': 'default_parameter', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'all_on_gpu'},{'id': '34', 'type': 'False', 'children': []},{'id': '35', 'type': 'default_parameter', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'decom_mode'},{'id': '37', 'type': 'string', 'children': [], 'value': '"ser"'},{'id': '38', 'type': 'default_parameter', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'core_count'},{'id': '40', 'type': 'integer', 'children': [], 'value': '1'},{'id': '41', 'type': 'default_parameter', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'conv_device'},{'id': '43', 'type': 'string', 'children': [], 'value': "'cpu'"},{'id': '44', 'type': 'default_parameter', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'conv_mode'},{'id': '46', 'type': 'string', 'children': [], 'value': "'linear'"},{'id': '47', 'type': 'default_parameter', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'extraction_mode'},{'id': '49', 'type': 'string', 'children': [], 'value': "'cpu'"},{'id': '50', 'type': 'default_parameter', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'enforce_positivity'},{'id': '52', 'type': 'False', 'children': []},{'id': '53', 'type': 'default_parameter', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'edge_suppression'},{'id': '55', 'type': 'False', 'children': []},{'id': '56', 'type': 'default_parameter', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'edge_offset'},{'id': '58', 'type': 'integer', 'children': [], 'value': '0'},{'id': '59', 'type': 'default_parameter', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'flux_threshold'},{'id': '61', 'type': 'integer', 'children': [], 'value': '0'},{'id': '62', 'type': 'default_parameter', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'neg_comp'},{'id': '64', 'type': 'False', 'children': []},{'id': '65', 'type': 'default_parameter', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'edge_excl'},{'id': '67', 'type': 'integer', 'children': [], 'value': '0'},{'id': '68', 'type': 'default_parameter', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'int_excl'},{'id': '70', 'type': 'integer', 'children': [], 'value': '0'},{'id': '71', 'type': 'block', 'children': ['72', '78', '82', '224', '230']},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'dirty_data'},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'dirty_data'},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'assignment', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'scale_count'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'start_scale'},{'id': '82', 'type': 'while_statement', 'children': ['83', '88']},{'id': '83', 'type': 'not_operator', 'children': ['84']},{'id': '84', 'type': '()', 'children': ['85']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'complete'},{'id': '88', 'type': 'block', 'children': ['89', '101', '170', '178', '182', '210']},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'call', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'string', 'children': [], 'value': '"MORESANE at scale {}"'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '99', 'type': 'argument_list', 'children': ['100']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'scale_count'},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'moresane'},{'id': '106', 'type': 'argument_list', 'children': ['107', '110', '113', '116', '119', '122', '125', '128', '131', '134', '137', '140', '143', '146', '149', '152', '155', '158', '161', '164', '167']},{'id': '107', 'type': 'keyword_argument', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'subregion'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'subregion'},{'id': '110', 'type': 'keyword_argument', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'scale_count'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'scale_count'},{'id': '113', 'type': 'keyword_argument', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'sigma_level'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'sigma_level'},{'id': '116', 'type': 'keyword_argument', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'loop_gain'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'loop_gain'},{'id': '119', 'type': 'keyword_argument', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'tolerance'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'tolerance'},{'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'accuracy'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'accuracy'},{'id': '125', 'type': 'keyword_argument', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'major_loop_miter'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'major_loop_miter'},{'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'minor_loop_miter'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'minor_loop_miter'},{'id': '131', 'type': 'keyword_argument', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'all_on_gpu'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'all_on_gpu'},{'id': '134', 'type': 'keyword_argument', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'decom_mode'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'decom_mode'},{'id': '137', 'type': 'keyword_argument', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'core_count'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'core_count'},{'id': '140', 'type': 'keyword_argument', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'conv_device'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'conv_device'},{'id': '143', 'type': 'keyword_argument', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'conv_mode'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'conv_mode'},{'id': '146', 'type': 'keyword_argument', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'extraction_mode'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'extraction_mode'},{'id': '149', 'type': 'keyword_argument', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'enforce_positivity'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'enforce_positivity'},{'id': '152', 'type': 'keyword_argument', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'edge_suppression'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'edge_suppression'},{'id': '155', 'type': 'keyword_argument', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'edge_offset'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'edge_offset'},{'id': '158', 'type': 'keyword_argument', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'flux_threshold'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'flux_threshold'},{'id': '161', 'type': 'keyword_argument', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'neg_comp'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'neg_comp'},{'id': '164', 'type': 'keyword_argument', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'edge_excl'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'edge_excl'},{'id': '167', 'type': 'keyword_argument', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'int_excl'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'int_excl'},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'dirty_data'},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'residual'},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'augmented_assignment', 'children': ['180', '181'], 'value': '+='},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'scale_count'},{'id': '181', 'type': 'integer', 'children': [], 'value': '1'},{'id': '182', 'type': 'if_statement', 'children': ['183', '201']},{'id': '183', 'type': '()', 'children': ['184']},{'id': '184', 'type': 'comparison_operator', 'children': ['185', '186'], 'value': '>'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'scale_count'},{'id': '186', 'type': 'binary_operator', 'children': ['187', '200'], 'value': '-'},{'id': '187', 'type': '()', 'children': ['188']},{'id': '188', 'type': 'call', 'children': ['189', '192']},{'id': '189', 'type': 'attribute', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'log2'},{'id': '192', 'type': 'argument_list', 'children': ['193']},{'id': '193', 'type': 'subscript', 'children': ['194', '199']},{'id': '194', 'type': 'attribute', 'children': ['195', '198']},{'id': '195', 'type': 'attribute', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'dirty_data'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '199', 'type': 'integer', 'children': [], 'value': '0'},{'id': '200', 'type': 'integer', 'children': [], 'value': '1'},{'id': '201', 'type': 'block', 'children': ['202', '209']},{'id': '202', 'type': 'expression_statement', 'children': ['203']},{'id': '203', 'type': 'call', 'children': ['204', '207']},{'id': '204', 'type': 'attribute', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '207', 'type': 'argument_list', 'children': ['208']},{'id': '208', 'type': 'string', 'children': [], 'value': '"Maximum scale reached - finished."'},{'id': '209', 'type': 'break_statement', 'children': []},{'id': '210', 'type': 'if_statement', 'children': ['211', '215']},{'id': '211', 'type': '()', 'children': ['212']},{'id': '212', 'type': 'comparison_operator', 'children': ['213', '214'], 'value': '>'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'scale_count'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'stop_scale'},{'id': '215', 'type': 'block', 'children': ['216', '223']},{'id': '216', 'type': 'expression_statement', 'children': ['217']},{'id': '217', 'type': 'call', 'children': ['218', '221']},{'id': '218', 'type': 'attribute', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '221', 'type': 'argument_list', 'children': ['222']},{'id': '222', 'type': 'string', 'children': [], 'value': '"Maximum scale reached - finished."'},{'id': '223', 'type': 'break_statement', 'children': []},{'id': '224', 'type': 'expression_statement', 'children': ['225']},{'id': '225', 'type': 'assignment', 'children': ['226', '229']},{'id': '226', 'type': 'attribute', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'dirty_data'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'dirty_data'},{'id': '230', 'type': 'expression_statement', 'children': ['231']},{'id': '231', 'type': 'assignment', 'children': ['232', '235']},{'id': '232', 'type': 'attribute', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'complete'},{'id': '235', 'type': 'False', 'children': []} | def moresane_by_scale(self, start_scale=1, stop_scale=20, subregion=None, sigma_level=4, loop_gain=0.1,
tolerance=0.75, accuracy=1e-6, major_loop_miter=100, minor_loop_miter=30, all_on_gpu=False,
decom_mode="ser", core_count=1, conv_device='cpu', conv_mode='linear', extraction_mode='cpu',
enforce_positivity=False, edge_suppression=False,
edge_offset=0, flux_threshold=0, neg_comp=False, edge_excl=0, int_excl=0):
dirty_data = self.dirty_data
scale_count = start_scale
while not (self.complete):
logger.info("MORESANE at scale {}".format(scale_count))
self.moresane(subregion=subregion, scale_count=scale_count, sigma_level=sigma_level, loop_gain=loop_gain,
tolerance=tolerance, accuracy=accuracy, major_loop_miter=major_loop_miter,
minor_loop_miter=minor_loop_miter, all_on_gpu=all_on_gpu, decom_mode=decom_mode,
core_count=core_count, conv_device=conv_device, conv_mode=conv_mode,
extraction_mode=extraction_mode, enforce_positivity=enforce_positivity,
edge_suppression=edge_suppression, edge_offset=edge_offset,
flux_threshold=flux_threshold, neg_comp=neg_comp,
edge_excl=edge_excl, int_excl=int_excl)
self.dirty_data = self.residual
scale_count += 1
if (scale_count>(np.log2(self.dirty_data.shape[0]))-1):
logger.info("Maximum scale reached - finished.")
break
if (scale_count>stop_scale):
logger.info("Maximum scale reached - finished.")
break
self.dirty_data = dirty_data
self.complete = False |
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'children': [], 'value': 'kwargs'},{'id': '16', 'type': 'block', 'children': ['17', '25', '35', '45', '53', '67', '85', '119', '158', '193', '238']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'parser'},{'id': '20', 'type': 'call', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'argparse'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'ArgumentParser'},{'id': '24', 'type': 'argument_list', 'children': []},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'parser'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'add_argument'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'string', 'children': [], 'value': "'--no_input'"},{'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '34', 'type': 'string', 'children': [], 'value': "'store_true'"},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'parser'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'add_argument'},{'id': '40', 'type': 'argument_list', 'children': ['41', '42']},{'id': '41', 'type': 'string', 'children': [], 'value': "'--create_new'"},{'id': '42', 'type': 'keyword_argument', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'action'},{'id': '44', 'type': 'string', 'children': [], 'value': "'store_true'"},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '48', 'type': 'call', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'parser'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'parse_args'},{'id': '52', 'type': 'argument_list', 'children': []},{'id': '53', 'type': 'if_statement', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'no_input'},{'id': '57', 'type': 'block', 'children': ['58', '63']},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'string', 'children': [], 'value': "'Parameter --no_input was given'"},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'no_input'},{'id': '66', 'type': 'True', 'children': []},{'id': '67', 'type': 'if_statement', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'create_new'},{'id': '71', 'type': 'block', 'children': ['72', '77', '81']},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'string', 'children': [], 'value': "'Parameter --create_new was given'"},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'create_new'},{'id': '80', 'type': 'True', 'children': []},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'assignment', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'no_input'},{'id': '84', 'type': 'True', 'children': []},{'id': '85', 'type': 'function_definition', 'children': ['86', '87', '88']},{'id': '86', 'type': 'function_name', 'children': [], 'value': 'savefile_more_recent'},{'id': '87', 'type': 'parameters', 'children': []},{'id': '88', 'type': 'block', 'children': ['89', '100', '115']},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'assignment', 'children': ['91', '92']},{'id': 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'identifier', 'children': [], 'value': 'os'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'getmtime'},{'id': '109', 'type': 'argument_list', 'children': ['110']},{'id': '110', 'type': 'subscript', 'children': ['111', '114']},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'argv'},{'id': '114', 'type': 'integer', 'children': [], 'value': '0'},{'id': '115', 'type': 'return_statement', 'children': ['116']},{'id': '116', 'type': 'comparison_operator', 'children': ['117', '118'], 'value': '>'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'time_savefile'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'time_program'},{'id': '119', 'type': 'function_definition', 'children': ['120', '121', '122']},{'id': '120', 'type': 'function_name', 'children': [], 'value': 'load_pickle'},{'id': '121', 'type': 'parameters', 'children': []},{'id': '122', 'type': 'block', 'children': ['123', '146', '156']},{'id': '123', 'type': 'with_statement', 'children': ['124', '134']},{'id': '124', 'type': 'with_clause', 'children': ['125']},{'id': '125', 'type': 'with_item', 'children': ['126']},{'id': '126', 'type': 'as_pattern', 'children': ['127', '132']},{'id': '127', 'type': 'call', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '129', 'type': 'argument_list', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '131', 'type': 'string', 'children': [], 'value': "'rb'"},{'id': '132', 'type': 'as_pattern_target', 'children': ['133']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'of'},{'id': '134', 'type': 'block', 'children': ['135']},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'assignment', 'children': ['137', '140']},{'id': '137', 'type': 'pattern_list', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'statefile_version'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '140', 'type': 'call', 'children': ['141', '144']},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'pickle'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'load'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'of'},{'id': '146', 'type': 'if_statement', 'children': ['147', '150']},{'id': '147', 'type': 'comparison_operator', 'children': ['148', '149'], 'value': '!='},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'statefile_version'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'STATEFILE_VERSION'},{'id': '150', 'type': 'block', 'children': ['151']},{'id': '151', 'type': 'raise_statement', 'children': ['152']},{'id': '152', 'type': 'call', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'},{'id': '154', 'type': 'argument_list', 'children': ['155']},{'id': '155', 'type': 'string', 'children': [], 'value': "f'Wrong statefile version, please remove state file {filename}'"},{'id': '156', 'type': 'return_statement', 'children': ['157']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '158', 'type': 'function_definition', 'children': ['159', '160', '161']},{'id': '159', 'type': 'function_name', 'children': [], 'value': 'load'},{'id': '160', 'type': 'parameters', 'children': []},{'id': '161', 'type': 'block', 'children': ['162', '169', '177', '191']},{'id': '162', 'type': 'expression_statement', 'children': ['163']},{'id': '163', 'type': 'call', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '165', 'type': 'argument_list', 'children': ['166']},{'id': '166', 'type': 'binary_operator', 'children': ['167', '168'], 'value': '%'},{'id': '167', 'type': 'string', 'children': [], 'value': "'Loading %s'"},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'assignment', 'children': ['171', '174']},{'id': '171', 'type': 'pattern_list', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'obj_list'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '174', 'type': 'call', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'load_pickle'},{'id': '176', 'type': 'argument_list', 'children': []},{'id': '177', 'type': 'expression_statement', 'children': ['178']},{'id': '178', 'type': 'assignment', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'system'},{'id': '180', 'type': 'call', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'System'},{'id': '182', 'type': 'argument_list', 'children': ['183', '186', '189']},{'id': '183', 'type': 'keyword_argument', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'load_state'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'obj_list'},{'id': '186', 'type': 'keyword_argument', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '189', 'type': 'dictionary_splat', 'children': ['190']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '191', 'type': 'return_statement', 'children': ['192']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'system'},{'id': '193', 'type': 'function_definition', 'children': ['194', '195', '196']},{'id': '194', 'type': 'function_name', 'children': [], 'value': 'create'},{'id': '195', 'type': 'parameters', 'children': []},{'id': '196', 'type': 'block', 'children': ['197', '202', '206', '226']},{'id': '197', 'type': 'expression_statement', 'children': ['198']},{'id': '198', 'type': 'call', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '200', 'type': 'argument_list', 'children': ['201']},{'id': '201', 'type': 'string', 'children': [], 'value': "'Creating new system'"},{'id': '202', 'type': 'expression_statement', 'children': ['203']},{'id': '203', 'type': 'assignment', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '205', 'type': 'None', 'children': []},{'id': '206', 'type': 'if_statement', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '208', 'type': 'block', 'children': ['209']},{'id': '209', 'type': 'try_statement', 'children': ['210', '219']},{'id': '210', 'type': 'block', 'children': ['211']},{'id': '211', 'type': 'expression_statement', 'children': ['212']},{'id': '212', 'type': 'assignment', 'children': ['213', '216']},{'id': '213', 'type': 'pattern_list', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'obj_list'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '216', 'type': 'call', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'load_pickle'},{'id': '218', 'type': 'argument_list', 'children': []},{'id': '219', 'type': 'except_clause', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'FileNotFoundError'},{'id': '221', 'type': 'block', 'children': ['222']},{'id': '222', 'type': 'expression_statement', 'children': ['223']},{'id': '223', 'type': 'assignment', 'children': ['224', '225']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '225', 'type': 'None', 'children': []},{'id': '226', 'type': 'return_statement', 'children': ['227']},{'id': '227', 'type': 'call', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '229', 'type': 'argument_list', 'children': ['230', '233', '236']},{'id': '230', 'type': 'keyword_argument', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '233', 'type': 'keyword_argument', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'load_config'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '236', 'type': 'dictionary_splat', 'children': ['237']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '238', 'type': 'if_statement', 'children': ['239', '249', '304']},{'id': '239', 'type': 'boolean_operator', 'children': ['240', '241'], 'value': 'and'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '241', 'type': 'call', 'children': ['242', '247']},{'id': '242', 'type': 'attribute', 'children': ['243', '246']},{'id': '243', 'type': 'attribute', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'isfile'},{'id': '247', 'type': 'argument_list', 'children': ['248']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '249', 'type': 'block', 'children': ['250']},{'id': '250', 'type': 'if_statement', 'children': ['251', '257', '262']},{'id': '251', 'type': 'boolean_operator', 'children': ['252', '255'], 'value': 'and'},{'id': '252', 'type': 'call', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'savefile_more_recent'},{'id': '254', 'type': 'argument_list', 'children': []},{'id': '255', 'type': 'not_operator', 'children': ['256']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'create_new'},{'id': '257', 'type': 'block', 'children': ['258']},{'id': '258', 'type': 'return_statement', 'children': ['259']},{'id': '259', 'type': 'call', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'load'},{'id': '261', 'type': 'argument_list', 'children': []},{'id': '262', 'type': 'else_clause', 'children': ['263']},{'id': '263', 'type': 'block', 'children': ['264', '276']},{'id': '264', 'type': 'if_statement', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'no_input'},{'id': '266', 'type': 'block', 'children': ['267', '272']},{'id': '267', 'type': 'expression_statement', 'children': ['268']},{'id': '268', 'type': 'call', 'children': ['269', '270']},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '270', 'type': 'argument_list', 'children': ['271']},{'id': '271', 'type': 'string', 'children': [], 'value': "'Program file more recent. Loading that instead.'"},{'id': '272', 'type': 'return_statement', 'children': ['273']},{'id': '273', 'type': 'call', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'create'},{'id': '275', 'type': 'argument_list', 'children': []},{'id': '276', 'type': 'while_statement', 'children': ['277', '278']},{'id': '277', 'type': 'True', 'children': []},{'id': '278', 'type': 'block', 'children': ['279', '286']},{'id': '279', 'type': 'expression_statement', 'children': ['280']},{'id': '280', 'type': 'assignment', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'answer'},{'id': '282', 'type': 'call', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'input'},{'id': '284', 'type': 'argument_list', 'children': ['285']},{'id': '285', 'type': 'string', 'children': [], 'value': "'Program file more recent. Do you want to load it? (y/n) '"},{'id': '286', 'type': 'if_statement', 'children': ['287', '290', '295']},{'id': '287', 'type': 'comparison_operator', 'children': ['288', '289'], 'value': '=='},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'answer'},{'id': '289', 'type': 'string', 'children': [], 'value': "'y'"},{'id': '290', 'type': 'block', 'children': ['291']},{'id': '291', 'type': 'return_statement', 'children': ['292']},{'id': '292', 'type': 'call', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'create'},{'id': '294', 'type': 'argument_list', 'children': []},{'id': '295', 'type': 'elif_clause', 'children': ['296', '299']},{'id': '296', 'type': 'comparison_operator', 'children': ['297', '298'], 'value': '=='},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'answer'},{'id': '298', 'type': 'string', 'children': [], 'value': "'n'"},{'id': '299', 'type': 'block', 'children': ['300']},{'id': '300', 'type': 'return_statement', 'children': ['301']},{'id': '301', 'type': 'call', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'load'},{'id': '303', 'type': 'argument_list', 'children': []},{'id': '304', 'type': 'else_clause', 'children': ['305']},{'id': '305', 'type': 'block', 'children': ['306']},{'id': '306', 'type': 'return_statement', 'children': ['307']},{'id': '307', 'type': 'call', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'create'},{'id': '309', 'type': 'argument_list', 'children': []} | def load_or_create(cls, filename=None, no_input=False, create_new=False, **kwargs):
parser = argparse.ArgumentParser()
parser.add_argument('--no_input', action='store_true')
parser.add_argument('--create_new', action='store_true')
args = parser.parse_args()
if args.no_input:
print('Parameter --no_input was given')
no_input = True
if args.create_new:
print('Parameter --create_new was given')
create_new = True
no_input = True
def savefile_more_recent():
time_savefile = os.path.getmtime(filename)
time_program = os.path.getmtime(sys.argv[0])
return time_savefile > time_program
def load_pickle():
with open(filename, 'rb') as of:
statefile_version, data = pickle.load(of)
if statefile_version != STATEFILE_VERSION:
raise RuntimeError(f'Wrong statefile version, please remove state file {filename}')
return data
def load():
print('Loading %s' % filename)
obj_list, config = load_pickle()
system = System(load_state=obj_list, filename=filename, **kwargs)
return system
def create():
print('Creating new system')
config = None
if filename:
try:
obj_list, config = load_pickle()
except FileNotFoundError:
config = None
return cls(filename=filename, load_config=config, **kwargs)
if filename and os.path.isfile(filename):
if savefile_more_recent() and not create_new:
return load()
else:
if no_input:
print('Program file more recent. Loading that instead.')
return create()
while True:
answer = input('Program file more recent. Do you want to load it? (y/n) ')
if answer == 'y':
return create()
elif answer == 'n':
return load()
else:
return create() |
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'18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '19', 'type': 'argument_list', 'children': ['20', '21']},{'id': '20', 'type': 'string', 'children': [], 'value': '"Shutting down %s, please wait a moment."'},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '24', 'type': 'for_statement', 'children': ['25', '26', '31']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'threading'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '30', 'type': 'argument_list', 'children': []},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'if_statement', 'children': ['33', '38']},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '35', 'type': 'argument_list', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'TimerClass'},{'id': '38', 'type': 'block', 'children': ['39']},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'cancel'},{'id': '44', 'type': 'argument_list', 'children': []},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '52']},{'id': '47', 'type': 'attribute', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'string', 'children': [], 'value': "'Timers cancelled'"},{'id': '54', 'type': 'for_statement', 'children': ['55', '56', '59']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'objects'},{'id': '59', 'type': 'block', 'children': ['60']},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'cleanup'},{'id': '65', 'type': 'argument_list', 'children': []},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '73']},{'id': '68', 'type': 'attribute', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'string', 'children': [], 'value': "'Sensors etc cleanups done'"},{'id': '75', 'type': 'for_statement', 'children': ['76', '77', '90']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'ser'},{'id': '77', 'type': 'generator_expression', 'children': ['78', '79', '84']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '79', 'type': 'for_in_clause', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'services'},{'id': '84', 'type': 'if_clause', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '87', 'type': 'argument_list', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'AbstractUserService'},{'id': '90', 'type': 'block', 'children': ['91']},{'id': '91', 'type': 'expression_statement', 'children': 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'argument_list', 'children': []},{'id': '123', 'type': 'expression_statement', 'children': ['124']},{'id': '124', 'type': 'call', 'children': ['125', '130']},{'id': '125', 'type': 'attribute', 'children': ['126', '129']},{'id': '126', 'type': 'attribute', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'string', 'children': [], 'value': "'Worker thread really stopped'"},{'id': '132', 'type': 'for_statement', 'children': ['133', '134', '147']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'ser'},{'id': '134', 'type': 'generator_expression', 'children': ['135', '136', '141']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '136', 'type': 'for_in_clause', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'services'},{'id': '141', 'type': 'if_clause', 'children': ['142']},{'id': '142', 'type': 'call', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '144', 'type': 'argument_list', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'AbstractSystemService'},{'id': '147', 'type': 'block', 'children': ['148']},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'call', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'ser'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'cleanup_system'},{'id': '153', 'type': 'argument_list', 'children': []},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'call', 'children': ['156', '161']},{'id': '156', 'type': 'attribute', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '161', 'type': 'argument_list', 'children': ['162']},{'id': '162', 'type': 'string', 'children': [], 'value': "'System services cleaned up'"},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'assignment', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'threads'},{'id': '166', 'type': 'call', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '168', 'type': 'generator_expression', 'children': ['169', '172', '179']},{'id': '169', 'type': 'attribute', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '172', 'type': 'for_in_clause', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '174', 'type': 'call', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'threading'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '178', 'type': 'argument_list', 'children': []},{'id': '179', 'type': 'if_clause', 'children': ['180']},{'id': '180', 'type': 'boolean_operator', 'children': ['181', '186'], 'value': 'and'},{'id': '181', 'type': 'call', 'children': ['182', '185']},{'id': '182', 'type': 'attribute', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'is_alive'},{'id': '185', 'type': 'argument_list', 'children': []},{'id': '186', 'type': 'not_operator', 'children': ['187']},{'id': '187', 'type': 'attribute', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'daemon'},{'id': '190', 'type': 'if_statement', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'threads'},{'id': '192', 'type': 'block', 'children': ['193']},{'id': '193', 'type': 'expression_statement', 'children': ['194']},{'id': '194', 'type': 'call', 'children': ['195', '200']},{'id': '195', 'type': 'attribute', 'children': ['196', '199']},{'id': '196', 'type': 'attribute', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '200', 'type': 'argument_list', 'children': ['201', '204']},{'id': '201', 'type': 'concatenated_string', 'children': ['202', '203']},{'id': '202', 'type': 'string', 'children': [], 'value': "'After cleanup, we have still the following threads '"},{'id': '203', 'type': 'string', 'children': [], 'value': "'running: %s'"},{'id': '204', 'type': 'call', 'children': ['205', '208']},{'id': '205', 'type': 'attribute', 'children': ['206', '207']},{'id': '206', 'type': 'string', 'children': [], 'value': "', '"},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '208', 'type': 'argument_list', 'children': ['209']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'threads'} | def cleanup(self):
self.pre_exit_trigger = True
self.logger.info("Shutting down %s, please wait a moment.", self.name)
for t in threading.enumerate():
if isinstance(t, TimerClass):
t.cancel()
self.logger.debug('Timers cancelled')
for i in self.objects:
i.cleanup()
self.logger.debug('Sensors etc cleanups done')
for ser in (i for i in self.services if isinstance(i, AbstractUserService)):
ser.cleanup_system()
self.logger.debug('User services cleaned up')
if self.worker_thread.is_alive():
self.worker_thread.stop()
self.logger.debug('Worker thread really stopped')
for ser in (i for i in self.services if isinstance(i, AbstractSystemService)):
ser.cleanup_system()
self.logger.debug('System services cleaned up')
threads = list(t.name for t in threading.enumerate() if t.is_alive() and not t.daemon)
if threads:
self.logger.info('After cleanup, we have still the following threads '
'running: %s', ', '.join(threads)) |
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'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '17', 'type': 'string', 'children': [], 'value': "'program'"},{'id': '18', 'type': 'if_statement', 'children': ['19', '24', '29']},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '21', 'type': 'argument_list', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'AbstractSensor'},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '28', 'type': 'string', 'children': [], 'value': "'sensor'"},{'id': '29', 'type': 'elif_clause', 'children': ['30', '35']},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '32', 'type': 'argument_list', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'AbstractActuator'},{'id': '35', 'type': 'block', 'children': ['36']},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '39', 'type': 'string', 'children': [], 'value': "'actuator'"},{'id': '40', 'type': 'return_statement', 'children': ['41']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '42', 'type': 'if_statement', 'children': ['43', '44', '53']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '44', 'type': 'block', 'children': ['45']},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '50', 'type': 'argument_list', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '52', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '53', 'type': 'else_clause', 'children': ['54']},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '58', 'type': 'call', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'io'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'StringIO'},{'id': '62', 'type': 'argument_list', 'children': []},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'call', 'children': ['65', '68']},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'string', 'children': [], 'value': "'@startuml\\n'"},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'string', 'children': [], 'value': "'skinparam state {\\n'"},{'id': '77', 'type': 'for_statement', 'children': ['78', '81', '91']},{'id': '78', 'type': 'pattern_list', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '81', 'type': 'call', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '83', 'type': 'argument_list', 'children': ['84']},{'id': '84', 'type': 'call', 'children': ['85', '90']},{'id': '85', 'type': 'attribute', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'background_colors'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '90', 'type': 'argument_list', 'children': []},{'id': '91', 'type': 'block', 'children': ['92']},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'binary_operator', 'children': ['99', '100'], 'value': '%'},{'id': '99', 'type': 'string', 'children': [], 'value': "'BackGroundColor<<%s>> %s\\n'"},{'id': '100', 'type': 'tuple', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '108']},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'string', 'children': [], 'value': "'}\\n'"},{'id': '110', 'type': 'for_statement', 'children': ['111', '112', '117']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '112', 'type': 'attribute', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'system'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'objects'},{'id': '117', 'type': 'block', 'children': ['118', '130']},{'id': '118', 'type': 'if_statement', 'children': ['119', '128']},{'id': '119', 'type': 'boolean_operator', 'children': ['120', '125'], 'value': 'or'},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '122', 'type': 'argument_list', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'DefaultProgram'},{'id': '125', 'type': 'attribute', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'hide_in_uml'},{'id': '128', 'type': 'block', 'children': ['129']},{'id': '129', 'type': 'continue_statement', 'children': []},{'id': '130', 'type': 'if_statement', 'children': ['131', '136']},{'id': '131', 'type': 'call', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '133', 'type': 'argument_list', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'ProgrammableSystemObject'},{'id': '136', 'type': 'block', 'children': ['137', '152', '165', '221', '242', '276']},{'id': '137', 'type': 'expression_statement', 'children': ['138']},{'id': '138', 'type': 'call', 'children': ['139', '142']},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '142', 'type': 'argument_list', 'children': ['143']},{'id': '143', 'type': 'binary_operator', 'children': ['144', '145'], 'value': '%'},{'id': '144', 'type': 'string', 'children': [], 'value': '\'state "%s" as %s <<%s>>\\n\''},{'id': '145', 'type': 'tuple', 'children': ['146', '147', '148']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '148', 'type': 'call', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'get_type'},{'id': '150', 'type': 'argument_list', 'children': ['151']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'call', 'children': ['154', '157']},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '157', 'type': 'argument_list', 'children': ['158']},{'id': '158', 'type': 'binary_operator', 'children': ['159', '160'], 'value': '%'},{'id': '159', 'type': 'string', 'children': [], 'value': "'%s: %s\\n'"},{'id': '160', 'type': 'tuple', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '162', 'type': 'attribute', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'class_name'},{'id': '165', 'type': 'if_statement', 'children': ['166', '171', '201']},{'id': '166', 'type': 'call', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '168', 'type': 'argument_list', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'AbstractActuator'},{'id': '171', 'type': 'block', 'children': ['172']},{'id': '172', 'type': 'for_statement', 'children': ['173', '174', '180']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '174', 'type': 'call', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'reversed'},{'id': '176', 'type': 'argument_list', 'children': ['177']},{'id': '177', 'type': 'attribute', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'program_stack'},{'id': '180', 'type': 'block', 'children': ['181']},{'id': '181', 'type': 'expression_statement', 'children': ['182']},{'id': '182', 'type': 'call', 'children': ['183', '186']},{'id': '183', 'type': 'attribute', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '186', 'type': 'argument_list', 'children': ['187']},{'id': '187', 'type': 'binary_operator', 'children': ['188', '189'], 'value': '%'},{'id': '188', 'type': 'string', 'children': [], 'value': "'%s: %s :: %s\\n'"},{'id': '189', 'type': 'tuple', 'children': ['190', '191', '192']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '192', 'type': 'call', 'children': ['193', '198']},{'id': '193', 'type': 'attribute', 'children': ['194', '197']},{'id': '194', 'type': 'attribute', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'program_status'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '198', 'type': 'argument_list', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '200', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '201', 'type': 'elif_clause', 'children': ['202', '207']},{'id': '202', 'type': 'call', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '204', 'type': 'argument_list', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '206', 'type': 'string', 'children': [], 'value': "'status'"},{'id': '207', 'type': 'block', 'children': ['208']},{'id': '208', 'type': 'expression_statement', 'children': ['209']},{'id': '209', 'type': 'call', 'children': ['210', '213']},{'id': '210', 'type': 'attribute', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '213', 'type': 'argument_list', 'children': ['214']},{'id': '214', 'type': 'binary_operator', 'children': ['215', '216'], 'value': '%'},{'id': '215', 'type': 'string', 'children': [], 'value': "'%s: Status: %s\\n'"},{'id': '216', 'type': 'tuple', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '218', 'type': 'attribute', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'status'},{'id': '221', 'type': 'if_statement', 'children': ['222', '228']},{'id': '222', 'type': 'call', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '224', 'type': 'argument_list', 'children': ['225', '226', '227']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '226', 'type': 'string', 'children': [], 'value': "'is_program'"},{'id': '227', 'type': 'False', 'children': []},{'id': '228', 'type': 'block', 'children': ['229']},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'call', 'children': ['231', '234']},{'id': '231', 'type': 'attribute', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '234', 'type': 'argument_list', 'children': ['235']},{'id': '235', 'type': 'binary_operator', 'children': ['236', '237'], 'value': '%'},{'id': '236', 'type': 'string', 'children': [], 'value': "'%s: Priority: %s\\n'"},{'id': '237', 'type': 'tuple', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '239', 'type': 'attribute', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'priority'},{'id': '242', 'type': 'for_statement', 'children': ['243', '244', '247']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '244', 'type': 'attribute', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'actual_triggers'},{'id': '247', 'type': 'block', 'children': ['248', '260']},{'id': '248', 'type': 'if_statement', 'children': ['249', '258']},{'id': '249', 'type': 'boolean_operator', 'children': ['250', '255'], 'value': 'or'},{'id': '250', 'type': 'call', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '252', 'type': 'argument_list', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'DefaultProgram'},{'id': '255', 'type': 'attribute', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'hide_in_uml'},{'id': '258', 'type': 'block', 'children': ['259']},{'id': '259', 'type': 'continue_statement', 'children': []},{'id': '260', 'type': 'expression_statement', 'children': ['261']},{'id': '261', 'type': 'call', 'children': ['262', '265']},{'id': '262', 'type': 'attribute', 'children': ['263', '264']},{'id': '263', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '265', 'type': 'argument_list', 'children': ['266']},{'id': '266', 'type': 'binary_operator', 'children': ['267', '268'], 'value': '%'},{'id': '267', 'type': 'string', 'children': [], 'value': "'%s -[%s]-> %s\\n'"},{'id': '268', 'type': 'tuple', 'children': ['269', '270', '275']},{'id': '269', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '270', 'type': 'subscript', 'children': ['271', '274']},{'id': '271', 'type': 'attribute', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'arrow_colors'},{'id': '274', 'type': 'string', 'children': [], 'value': "'trigger'"},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '276', 'type': 'for_statement', 'children': ['277', '278', '281']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '278', 'type': 'attribute', 'children': ['279', '280']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'actual_targets'},{'id': '281', 'type': 'block', 'children': ['282', '288', '303', '317']},{'id': '282', 'type': 'if_statement', 'children': ['283', '286']},{'id': '283', 'type': 'attribute', 'children': ['284', '285']},{'id': '284', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'hide_in_uml'},{'id': '286', 'type': 'block', 'children': ['287']},{'id': '287', 'type': 'continue_statement', 'children': []},{'id': '288', 'type': 'if_statement', 'children': ['289', '292', '297']},{'id': '289', 'type': 'attribute', 'children': ['290', '291']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'active'},{'id': '292', 'type': 'block', 'children': ['293']},{'id': '293', 'type': 'expression_statement', 'children': ['294']},{'id': '294', 'type': 'assignment', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '296', 'type': 'string', 'children': [], 'value': "'active_target'"},{'id': '297', 'type': 'else_clause', 'children': ['298']},{'id': '298', 'type': 'block', 'children': ['299']},{'id': '299', 'type': 'expression_statement', 'children': ['300']},{'id': '300', 'type': 'assignment', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '302', 'type': 'string', 'children': [], 'value': "'inactive_target'"},{'id': '303', 'type': 'if_statement', 'children': ['304', '312']},{'id': '304', 'type': 'comparison_operator', 'children': ['305', '311'], 'value': '=='},{'id': '305', 'type': 'call', 'children': ['306', '307']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '307', 'type': 'argument_list', 'children': ['308', '309', '310']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '309', 'type': 'string', 'children': [], 'value': "'program'"},{'id': '310', 'type': 'None', 'children': []},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '312', 'type': 'block', 'children': ['313']},{'id': '313', 'type': 'expression_statement', 'children': ['314']},{'id': '314', 'type': 'assignment', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '316', 'type': 'string', 'children': [], 'value': "'controlled_target'"},{'id': '317', 'type': 'expression_statement', 'children': ['318']},{'id': '318', 'type': 'call', 'children': ['319', '322']},{'id': '319', 'type': 'attribute', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '322', 'type': 'argument_list', 'children': ['323']},{'id': '323', 'type': 'binary_operator', 'children': ['324', '325'], 'value': '%'},{'id': '324', 'type': 'string', 'children': [], 'value': "'%s -[%s]-> %s\\n'"},{'id': '325', 'type': 'tuple', 'children': ['326', '327', '332']},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '327', 'type': 'subscript', 'children': ['328', '331']},{'id': '328', 'type': 'attribute', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'arrow_colors'},{'id': '331', 'type': 'identifier', 'children': [], 'value': 'color'},{'id': '332', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '333', 'type': 'expression_statement', 'children': ['334']},{'id': '334', 'type': 'call', 'children': ['335', '338']},{'id': '335', 'type': 'attribute', 'children': ['336', '337']},{'id': '336', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '338', 'type': 'argument_list', 'children': ['339']},{'id': '339', 'type': 'string', 'children': [], 'value': "'@enduml\\n'"},{'id': '340', 'type': 'if_statement', 'children': ['341', '342', '349']},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '342', 'type': 'block', 'children': ['343']},{'id': '343', 'type': 'expression_statement', 'children': ['344']},{'id': '344', 'type': 'call', 'children': ['345', '348']},{'id': '345', 'type': 'attribute', 'children': ['346', '347']},{'id': '346', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '348', 'type': 'argument_list', 'children': []},{'id': '349', 'type': 'else_clause', 'children': ['350']},{'id': '350', 'type': 'block', 'children': ['351']},{'id': '351', 'type': 'return_statement', 'children': ['352']},{'id': '352', 'type': 'call', 'children': ['353', '356']},{'id': '353', 'type': 'attribute', 'children': ['354', '355']},{'id': '354', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '355', 'type': 'identifier', 'children': [], 'value': 'getvalue'},{'id': '356', 'type': 'argument_list', 'children': []} | def write_puml(self, filename=''):
def get_type(o):
type = 'program'
if isinstance(o, AbstractSensor):
type = 'sensor'
elif isinstance(o, AbstractActuator):
type = 'actuator'
return type
if filename:
s = open(filename, 'w')
else:
s = io.StringIO()
s.write('@startuml\n')
s.write('skinparam state {\n')
for k, v in list(self.background_colors.items()):
s.write('BackGroundColor<<%s>> %s\n' % (k, v))
s.write('}\n')
for o in self.system.objects:
if isinstance(o, DefaultProgram) or o.hide_in_uml:
continue
if isinstance(o, ProgrammableSystemObject):
s.write('state "%s" as %s <<%s>>\n' % (o, o, get_type(o)))
s.write('%s: %s\n' % (o, o.class_name))
if isinstance(o, AbstractActuator):
for p in reversed(o.program_stack):
s.write('%s: %s :: %s\n' % (o, p, o.program_status.get(p, '-')))
elif hasattr(o, 'status'):
s.write('%s: Status: %s\n' % (o, o.status))
if getattr(o, 'is_program', False):
s.write('%s: Priority: %s\n' % (o, o.priority))
for t in o.actual_triggers:
if isinstance(t, DefaultProgram) or t.hide_in_uml:
continue
s.write('%s -[%s]-> %s\n' % (t, self.arrow_colors['trigger'], o))
for t in o.actual_targets:
if t.hide_in_uml:
continue
if o.active:
color = 'active_target'
else:
color = 'inactive_target'
if getattr(t, 'program', None) == o:
color = 'controlled_target'
s.write('%s -[%s]-> %s\n' % (o, self.arrow_colors[color], t))
s.write('@enduml\n')
if filename:
s.close()
else:
return s.getvalue() |
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['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '17', 'type': 'integer', 'children': [], 'value': '0'},{'id': '18', 'type': 'if_statement', 'children': ['19', '22']},{'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': 'is'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '21', 'type': 'None', 'children': []},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'N'},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'call', 'children': ['46', '51']},{'id': '46', 'type': 'attribute', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '51', 'type': 'argument_list', 'children': []},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'n_classes'},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '63', 'type': 'if_statement', 'children': ['64', '68']},{'id': '64', 'type': 'not_operator', 'children': ['65']},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'sigma'},{'id': '68', 'type': 'block', 'children': ['69', '78']},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'sigma'},{'id': '74', 'type': 'call', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'median_kneighbour_distance'},{'id': '76', 'type': 'argument_list', 'children': ['77']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'assignment', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'gamma'},{'id': '83', 'type': 'binary_operator', 'children': ['84', '87'], 'value': '**'},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'sigma'},{'id': '87', 'type': 'unary_operator', 'children': ['88'], 'value': '-'},{'id': '88', 'type': 'integer', 'children': [], 'value': '2'},{'id': '89', 'type': 'if_statement', 'children': ['90', '94']},{'id': '90', 'type': 'not_operator', 'children': ['91']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'gamma'},{'id': '94', 'type': 'block', 'children': ['95']},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '100']},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'gamma'},{'id': '100', 'type': 'binary_operator', 'children': ['101', '104'], 'value': '**'},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'sigma'},{'id': '104', 'type': 'unary_operator', 'children': ['105'], 'value': '-'},{'id': '105', 'type': 'integer', 'children': [], 'value': '2'},{'id': '106', 'type': 'if_statement', 'children': ['107', '111']},{'id': '107', 'type': 'not_operator', 'children': ['108']},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'rho'},{'id': '111', 'type': 'block', 'children': ['112']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'rho'},{'id': '117', 'type': 'float', 'children': [], 'value': '0.1'},{'id': '118', 'type': 'if_statement', 'children': ['119', '124', '158']},{'id': '119', 'type': 'comparison_operator', 'children': ['120', '123'], 'value': 'is'},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'kernel_pos'},{'id': '123', 'type': 'None', 'children': []},{'id': '124', 'type': 'block', 'children': ['125', '135', '146']},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'B'},{'id': '128', 'type': 'call', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '130', 'type': 'argument_list', 'children': ['131', '134']},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'n_kernels_max'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'N'},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'assignment', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'kernel_idx'},{'id': '138', 'type': 'call', 'children': ['139', '144']},{'id': '139', 'type': 'attribute', 'children': ['140', '143']},{'id': '140', 'type': 'attribute', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'random'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'permutation'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'N'},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'assignment', 'children': ['148', '151']},{'id': '148', 'type': 'attribute', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'kernel_pos'},{'id': '151', 'type': 'subscript', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '153', 'type': 'subscript', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'kernel_idx'},{'id': '155', 'type': 'slice', 'children': ['156', '157']},{'id': '156', 'type': 'colon', 'children': []},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'B'},{'id': '158', 'type': 'else_clause', 'children': ['159']},{'id': '159', 'type': 'block', 'children': ['160']},{'id': '160', 'type': 'expression_statement', 'children': ['161']},{'id': '161', 'type': 'assignment', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'B'},{'id': '163', 'type': 'subscript', 'children': ['164', '169']},{'id': '164', 'type': 'attribute', 'children': ['165', '168']},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'kernel_pos'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '169', 'type': 'integer', 'children': [], 'value': '0'},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'Phi'},{'id': '173', 'type': 'call', 'children': ['174', '179']},{'id': '174', 'type': 'attribute', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'metrics'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'pairwise'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'rbf_kernel'},{'id': '179', 'type': 'argument_list', 'children': ['180', '181', '184']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '181', 'type': 'attribute', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'kernel_pos'},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'gamma'},{'id': '187', 'type': 'expression_statement', 'children': ['188']},{'id': '188', 'type': 'assignment', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'theta'},{'id': '190', 'type': 'dictionary', 'children': []},{'id': '191', 'type': 'expression_statement', 'children': ['192']},{'id': '192', 'type': 'assignment', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'Phi_PhiT'},{'id': '194', 'type': 'call', 'children': ['195', '198']},{'id': '195', 'type': 'attribute', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'dot'},{'id': '198', 'type': 'argument_list', 'children': ['199', '202']},{'id': '199', 'type': 'attribute', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'Phi'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'Phi'},{'id': '203', 'type': 'expression_statement', 'children': ['204']},{'id': '204', 'type': 'assignment', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'inverse_term'},{'id': '206', 'type': 'call', 'children': ['207', '212']},{'id': '207', 'type': 'attribute', 'children': ['208', '211']},{'id': '208', 'type': 'attribute', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'linalg'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'inv'},{'id': '212', 'type': 'argument_list', 'children': ['213']},{'id': '213', 'type': 'binary_operator', 'children': ['214', '215'], 'value': '+'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'Phi_PhiT'},{'id': '215', 'type': 'binary_operator', 'children': ['216', '219'], 'value': '*'},{'id': '216', 'type': 'attribute', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'rho'},{'id': '219', 'type': 'call', 'children': ['220', '223']},{'id': '220', 'type': 'attribute', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'eye'},{'id': '223', 'type': 'argument_list', 'children': ['224']},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'B'},{'id': '225', 'type': 'for_statement', 'children': ['226', '227', '230']},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '227', 'type': 'attribute', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '230', 'type': 'block', 'children': ['231', '243']},{'id': '231', 'type': 'expression_statement', 'children': ['232']},{'id': '232', 'type': 'assignment', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '234', 'type': 'call', 'children': ['235', '241']},{'id': '235', 'type': 'attribute', 'children': ['236', '240']},{'id': '236', 'type': '()', 'children': ['237']},{'id': '237', 'type': 'comparison_operator', 'children': ['238', '239'], 'value': '=='},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'astype'},{'id': '241', 'type': 'argument_list', 'children': ['242']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '243', 'type': 'expression_statement', 'children': ['244']},{'id': '244', 'type': 'assignment', 'children': ['245', '248']},{'id': '245', 'type': 'subscript', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'theta'},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '248', 'type': 'call', 'children': ['249', '252']},{'id': '249', 'type': 'attribute', 'children': ['250', '251']},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'dot'},{'id': '252', 'type': 'argument_list', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'inverse_term'},{'id': '254', 'type': 'call', 'children': ['255', '258']},{'id': '255', 'type': 'attribute', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'dot'},{'id': '258', 'type': 'argument_list', 'children': ['259', '262']},{'id': '259', 'type': 'attribute', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'Phi'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '263', 'type': 'expression_statement', 'children': ['264']},{'id': '264', 'type': 'assignment', 'children': ['265', '268']},{'id': '265', 'type': 'attribute', 'children': ['266', '267']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'theta'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'theta'} | def fit(self, X, y=None):
N = X.shape[0]
if y is None:
y = np.zeros(N)
self.classes = list(set(y))
self.classes.sort()
self.n_classes = len(self.classes)
if not self.sigma:
self.sigma = median_kneighbour_distance(X)
self.gamma = self.sigma**-2
if not self.gamma:
self.gamma = self.sigma**-2
if not self.rho:
self.rho = 0.1
if self.kernel_pos is None:
B = min(self.n_kernels_max, N)
kernel_idx = np.random.permutation(N)
self.kernel_pos = X[kernel_idx[:B]]
else:
B = self.kernel_pos.shape[0]
Phi = metrics.pairwise.rbf_kernel(X, self.kernel_pos, self.gamma)
theta = {}
Phi_PhiT = np.dot(Phi.T, Phi)
inverse_term = np.linalg.inv(Phi_PhiT + self.rho*np.eye(B))
for c in self.classes:
m = (y == c).astype(int)
theta[c] = np.dot(inverse_term, np.dot(Phi.T, m))
self.theta = theta |
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[], 'value': 'obsll'},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'predict_proba'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'X'},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '26']},{'id': '23', 'type': 'pattern_list', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'S'},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'obsll'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'tuple', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'S'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '47']},{'id': '42', 'type': 'subscript', 'children': ['43', '44', '45']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '44', 'type': 'integer', 'children': [], 'value': '0'},{'id': '45', 'type': 'slice', 'children': ['46']},{'id': '46', 'type': 'colon', 'children': []},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'pi'},{'id': '48', 'type': 'for_statement', 'children': ['49', '50', '55']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '52', 'type': 'argument_list', 'children': ['53', '54']},{'id': '53', 'type': 'integer', 'children': [], 'value': '1'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '55', 'type': 'block', 'children': ['56', '76', '93']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '63']},{'id': '58', 'type': 'subscript', 'children': ['59', '60', '61']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '61', 'type': 'slice', 'children': ['62']},{'id': '62', 'type': 'colon', 'children': []},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'dot'},{'id': '67', 'type': 'argument_list', 'children': ['68', '75']},{'id': '68', 'type': 'subscript', 'children': ['69', '70', '73']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '70', 'type': 'binary_operator', 'children': ['71', '72'], 'value': '-'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '72', 'type': 'integer', 'children': [], 'value': '1'},{'id': '73', 'type': 'slice', 'children': ['74']},{'id': '74', 'type': 'colon', 'children': []},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'A'},{'id': '76', 'type': 'for_statement', 'children': ['77', '78', '82']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '78', 'type': 'call', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'S'},{'id': '82', 'type': 'block', 'children': ['83']},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'augmented_assignment', 'children': ['85', '89'], 'value': '*='},{'id': '85', 'type': 'subscript', 'children': ['86', '87', '88']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '89', 'type': 'subscript', 'children': ['90', '91', '92']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'obsll'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '93', 'type': 'expression_statement', 'children': ['94']},{'id': '94', 'type': 'assignment', 'children': ['95', '100']},{'id': '95', 'type': 'subscript', 'children': ['96', '97', '98']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '98', 'type': 'slice', 'children': ['99']},{'id': '99', 'type': 'colon', 'children': []},{'id': '100', 'type': 'binary_operator', 'children': ['101', '106'], 'value': '/'},{'id': '101', 'type': 'subscript', 'children': ['102', '103', '104']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '104', 'type': 'slice', 'children': ['105']},{'id': '105', 'type': 'colon', 'children': []},{'id': '106', 'type': 'call', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'subscript', 'children': ['110', '111', '112']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '112', 'type': 'slice', 'children': ['113']},{'id': '113', 'type': 'colon', 'children': []},{'id': '114', 'type': 'if_statement', 'children': ['115', '118', '121']},{'id': '115', 'type': 'comparison_operator', 'children': ['116', '117'], 'value': '=='},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'inference'},{'id': '117', 'type': 'string', 'children': [], 'value': "'filtering'"},{'id': '118', 'type': 'block', 'children': ['119']},{'id': '119', 'type': 'return_statement', 'children': ['120']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '121', 'type': 'else_clause', 'children': ['122']},{'id': '122', 'type': 'block', 'children': ['123', '134', '145', '160', '232', '278']},{'id': '123', 'type': 'expression_statement', 'children': ['124']},{'id': '124', 'type': 'assignment', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'beta'},{'id': '126', 'type': 'call', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'zeros'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'tuple', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'S'},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'gamma'},{'id': '137', 'type': 'call', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': 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'1'},{'id': '170', 'type': 'unary_operator', 'children': ['171'], 'value': '-'},{'id': '171', 'type': 'integer', 'children': [], 'value': '1'},{'id': '172', 'type': 'block', 'children': ['173', '211']},{'id': '173', 'type': 'for_statement', 'children': ['174', '175', '179']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '177', 'type': 'argument_list', 'children': ['178']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'S'},{'id': '179', 'type': 'block', 'children': ['180']},{'id': '180', 'type': 'for_statement', 'children': ['181', '182', '186']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '182', 'type': 'call', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'S'},{'id': '186', 'type': 'block', 'children': ['187']},{'id': '187', 'type': 'expression_statement', 'children': ['188']},{'id': '188', 'type': 'augmented_assignment', 'children': ['189', '193'], 'value': '+='},{'id': '189', 'type': 'subscript', 'children': ['190', '191', '192']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'beta'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '193', 'type': 'binary_operator', 'children': ['194', '205'], 'value': '*'},{'id': '194', 'type': 'binary_operator', 'children': ['195', '199'], 'value': '*'},{'id': '195', 'type': 'subscript', 'children': ['196', '197', '198']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'A'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '199', 'type': 'subscript', 'children': ['200', '201', '204']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'obsll'},{'id': '201', 'type': 'binary_operator', 'children': ['202', '203'], 'value': '+'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '203', 'type': 'integer', 'children': [], 'value': '1'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '205', 'type': 'subscript', 'children': ['206', '207', '210']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'beta'},{'id': '207', 'type': 'binary_operator', 'children': ['208', '209'], 'value': '+'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '209', 'type': 'integer', 'children': [], 'value': '1'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '211', 'type': 'expression_statement', 'children': ['212']},{'id': '212', 'type': 'assignment', 'children': ['213', '218']},{'id': '213', 'type': 'subscript', 'children': ['214', '215', '216']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'beta'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '216', 'type': 'slice', 'children': ['217']},{'id': '217', 'type': 'colon', 'children': []},{'id': '218', 'type': 'binary_operator', 'children': ['219', '224'], 'value': '/'},{'id': '219', 'type': 'subscript', 'children': ['220', '221', '222']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'beta'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '222', 'type': 'slice', 'children': ['223']},{'id': '223', 'type': 'colon', 'children': []},{'id': '224', 'type': 'call', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '226', 'type': 'argument_list', 'children': ['227']},{'id': '227', 'type': 'subscript', 'children': ['228', '229', '230']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'beta'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '230', 'type': 'slice', 'children': ['231']},{'id': '231', 'type': 'colon', 'children': []},{'id': '232', 'type': 'for_statement', 'children': ['233', '234', '238']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '234', 'type': 'call', 'children': ['235', '236']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '236', 'type': 'argument_list', 'children': ['237']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'T'},{'id': '238', 'type': 'block', 'children': ['239', '257']},{'id': '239', 'type': 'expression_statement', 'children': ['240']},{'id': '240', 'type': 'assignment', 'children': ['241', '246']},{'id': '241', 'type': 'subscript', 'children': ['242', '243', '244']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'gamma'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '244', 'type': 'slice', 'children': ['245']},{'id': '245', 'type': 'colon', 'children': []},{'id': '246', 'type': 'binary_operator', 'children': ['247', '252'], 'value': '*'},{'id': '247', 'type': 'subscript', 'children': ['248', '249', '250']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'alpha'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '250', 'type': 'slice', 'children': ['251']},{'id': '251', 'type': 'colon', 'children': []},{'id': '252', 'type': 'subscript', 'children': ['253', '254', '255']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'beta'},{'id': '254', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '255', 'type': 'slice', 'children': ['256']},{'id': '256', 'type': 'colon', 'children': []},{'id': '257', 'type': 'expression_statement', 'children': ['258']},{'id': '258', 'type': 'assignment', 'children': ['259', '264']},{'id': '259', 'type': 'subscript', 'children': ['260', '261', '262']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'gamma'},{'id': '261', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '262', 'type': 'slice', 'children': ['263']},{'id': '263', 'type': 'colon', 'children': []},{'id': '264', 'type': 'binary_operator', 'children': ['265', '270'], 'value': '/'},{'id': '265', 'type': 'subscript', 'children': ['266', '267', '268']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'gamma'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '268', 'type': 'slice', 'children': ['269']},{'id': '269', 'type': 'colon', 'children': []},{'id': '270', 'type': 'call', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '272', 'type': 'argument_list', 'children': ['273']},{'id': '273', 'type': 'subscript', 'children': ['274', '275', '276']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'gamma'},{'id': '275', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '276', 'type': 'slice', 'children': ['277']},{'id': '277', 'type': 'colon', 'children': []},{'id': '278', 'type': 'return_statement', 'children': ['279']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'gamma'} | def predict_sequence(self, X, A, pi, inference='smoothing'):
obsll = self.predict_proba(X)
T, S = obsll.shape
alpha = np.zeros((T, S))
alpha[0, :] = pi
for t in range(1, T):
alpha[t, :] = np.dot(alpha[t-1, :], A)
for s in range(S):
alpha[t, s] *= obsll[t, s]
alpha[t, :] = alpha[t, :]/sum(alpha[t, :])
if inference == 'filtering':
return alpha
else:
beta = np.zeros((T, S))
gamma = np.zeros((T, S))
beta[T-1, :] = np.ones(S)
for t in range(T-2, -1, -1):
for i in range(S):
for j in range(S):
beta[t, i] += A[i, j]*obsll[t+1, j]*beta[t+1, j]
beta[t, :] = beta[t, :]/sum(beta[t, :])
for t in range(T):
gamma[t, :] = alpha[t, :]*beta[t, :]
gamma[t, :] = gamma[t, :]/sum(gamma[t, :])
return gamma |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_bgcolor'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'colname'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'cmap'},{'id': '8', 'type': 'string', 'children': [], 'value': "'copper'"},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '11', 'type': 'string', 'children': [], 'value': "'absmax'"},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'threshold'},{'id': '14', 'type': 'integer', 'children': [], 'value': '2'},{'id': '15', 'type': 'block', 'children': ['16', '28', '38', '47', '148', '164', '179', '189', '216', '227', '231']},{'id': '16', 'type': 'try_statement', 'children': ['17', '25']},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'cmap'},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'cmap_builder'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'cmap'},{'id': '25', 'type': 'except_clause', 'children': ['26']},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'pass_statement', 'children': []},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '31', 'type': 'attribute', 'children': ['32', '37']},{'id': '32', 'type': 'subscript', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'colname'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '38', 'type': 'if_statement', 'children': ['39', '45']},{'id': '39', 'type': 'comparison_operator', 'children': ['40', '44'], 'value': '=='},{'id': '40', 'type': 'call', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '44', 'type': 'integer', 'children': [], 'value': '0'},{'id': '45', 'type': 'block', 'children': ['46']},{'id': '46', 'type': 'return_statement', 'children': []},{'id': '47', 'type': 'if_statement', 'children': ['48', '51', '69', '121']},{'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': '=='},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '50', 'type': 'string', 'children': [], 'value': "'clip'"},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '55', 'type': 'list_comprehension', 'children': ['56', '66']},{'id': '56', 'type': 'binary_operator', 'children': ['57', '62'], 'value': '/'},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '59', 'type': 'argument_list', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'threshold'},{'id': '62', 'type': 'call', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'threshold'},{'id': '66', 'type': 'for_in_clause', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '69', 'type': 'elif_clause', 'children': ['70', '73']},{'id': '70', 'type': 'comparison_operator', 'children': ['71', '72'], 'value': '=='},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '72', 'type': 'string', 'children': [], 'value': "'absmax'"},{'id': '73', 'type': 'block', 'children': ['74', '85', '96', '105']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'call', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '84', 'type': 'argument_list', 'children': []},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'M'},{'id': '88', 'type': 'call', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '95', 'type': 'argument_list', 'children': []},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'assignment', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'M'},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'list', 'children': ['103', '104'], 'value': '[m, M]'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'M'},{'id': '105', 'type': 'if_statement', 'children': ['106', '109']},{'id': '106', 'type': 'comparison_operator', 'children': ['107', '108'], 'value': '!='},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'M'},{'id': '108', 'type': 'integer', 'children': [], 'value': '0'},{'id': '109', 'type': 'block', 'children': ['110']},{'id': '110', 'type': 'expression_statement', 'children': ['111']},{'id': '111', 'type': 'assignment', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '113', 'type': 'binary_operator', 'children': ['114', '120'], 'value': '/'},{'id': '114', 'type': '()', 'children': ['115']},{'id': '115', 'type': 'binary_operator', 'children': ['116', '119'], 'value': '+'},{'id': '116', 'type': 'binary_operator', 'children': ['117', '118'], 'value': '/'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'M'},{'id': '119', 'type': 'integer', 'children': [], 'value': '1'},{'id': '120', 'type': 'float', 'children': [], 'value': '2.'},{'id': '121', 'type': 'elif_clause', 'children': ['122', '125']},{'id': '122', 'type': 'comparison_operator', 'children': ['123', '124'], 'value': '=='},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '124', 'type': 'string', 'children': [], 'value': "'max'"},{'id': '125', 'type': 'block', 'children': ['126']},{'id': '126', 'type': 'if_statement', 'children': ['127', '134']},{'id': '127', 'type': 'comparison_operator', 'children': ['128', '133'], 'value': '!='},{'id': '128', 'type': 'call', 'children': ['129', '132']},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '132', 'type': 'argument_list', 'children': []},{'id': '133', 'type': 'integer', 'children': [], 'value': '0'},{'id': '134', 'type': 'block', 'children': ['135']},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'assignment', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '138', 'type': 'binary_operator', 'children': ['139', '140'], 'value': '/'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '140', 'type': 'call', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '142', 'type': 'argument_list', 'children': ['143']},{'id': '143', 'type': 'call', 'children': ['144', '147']},{'id': '144', 'type': 'attribute', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '147', 'type': 'argument_list', 'children': []},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'assignment', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'rgbcolors'},{'id': '151', 'type': 'list_comprehension', 'children': ['152', '161']},{'id': '152', 'type': 'subscript', 'children': ['153', '157']},{'id': '153', 'type': 'call', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'cmap'},{'id': '155', 'type': 'argument_list', 'children': ['156']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '157', 'type': 'slice', 'children': ['158', '159', '160']},{'id': '158', 'type': 'integer', 'children': [], 'value': '0'},{'id': '159', 'type': 'colon', 'children': []},{'id': '160', 'type': 'integer', 'children': [], 'value': '3'},{'id': '161', 'type': 'for_in_clause', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'hexcolors'},{'id': '167', 'type': 'list_comprehension', 'children': ['168', '176']},{'id': '168', 'type': 'call', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'rgb2hex'},{'id': '170', 'type': 'argument_list', 'children': ['171', '173']},{'id': '171', 'type': 'list_splat', 'children': ['172']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '173', 'type': 'keyword_argument', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'normalised'},{'id': '175', 'type': 'True', 'children': []},{'id': '176', 'type': 'for_in_clause', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'rgbcolors'},{'id': '179', 'type': 'expression_statement', 'children': ['180']},{'id': '180', 'type': 'assignment', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '182', 'type': 'attribute', 'children': ['183', '188']},{'id': '183', 'type': 'subscript', 'children': ['184', '187']},{'id': '184', 'type': 'attribute', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'colname'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '189', 'type': 'function_definition', 'children': ['190', '191', '193']},{'id': '190', 'type': 'function_name', 'children': [], 'value': 'prec'},{'id': '191', 'type': 'parameters', 'children': ['192']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '193', 'type': 'block', 'children': ['194']},{'id': '194', 'type': 'try_statement', 'children': ['195', '212']},{'id': '195', 'type': 'block', 'children': ['196', '210']},{'id': '196', 'type': 'expression_statement', 'children': ['197']},{'id': '197', 'type': 'assignment', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '199', 'type': 'call', 'children': ['200', '203']},{'id': '200', 'type': 'attribute', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'easydev'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'precision'},{'id': '203', 'type': 'argument_list', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '205', 'type': 'subscript', 'children': ['206', '209']},{'id': '206', 'type': 'attribute', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'pd_options'},{'id': '209', 'type': 'string', 'children': [], 'value': "'precision'"},{'id': '210', 'type': 'return_statement', 'children': ['211']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '212', 'type': 'except_clause', 'children': ['213']},{'id': '213', 'type': 'block', 'children': ['214']},{'id': '214', 'type': 'return_statement', 'children': ['215']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '216', 'type': 'expression_statement', 'children': ['217']},{'id': '217', 'type': 'assignment', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '219', 'type': 'list_comprehension', 'children': ['220', '224']},{'id': '220', 'type': 'call', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'prec'},{'id': '222', 'type': 'argument_list', 'children': ['223']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '224', 'type': 'for_in_clause', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '227', 'type': 'expression_statement', 'children': ['228']},{'id': '228', 'type': 'assignment', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'html_formatter'},{'id': '230', 'type': 'string', 'children': [], 'value': '\'<p style="background-color:{0}">{1}</p>\''},{'id': '231', 'type': 'expression_statement', 'children': ['232']},{'id': '232', 'type': 'assignment', 'children': ['233', '238']},{'id': '233', 'type': 'subscript', 'children': ['234', '237']},{'id': '234', 'type': 'attribute', 'children': ['235', '236']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'colname'},{'id': '238', 'type': 'list_comprehension', 'children': ['239', '246']},{'id': '239', 'type': 'call', 'children': ['240', '243']},{'id': '240', 'type': 'attribute', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'html_formatter'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '243', 'type': 'argument_list', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '246', 'type': 'for_in_clause', 'children': ['247', '250']},{'id': '247', 'type': 'pattern_list', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '250', 'type': 'call', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '252', 'type': 'argument_list', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'hexcolors'},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'data'} | def add_bgcolor(self, colname, cmap='copper', mode='absmax',
threshold=2):
try:
cmap = cmap_builder(cmap)
except:
pass
data = self.df[colname].values
if len(data) == 0:
return
if mode == 'clip':
data = [min(x, threshold)/float(threshold) for x in data]
elif mode == 'absmax':
m = abs(data.min())
M = abs(data.max())
M = max([m, M])
if M != 0:
data = (data / M + 1)/2.
elif mode == 'max':
if data.max() != 0:
data = data / float(data.max())
rgbcolors = [cmap(x)[0:3] for x in data]
hexcolors = [rgb2hex(*x, normalised=True) for x in rgbcolors]
data = self.df[colname].values
def prec(x):
try:
x = easydev.precision(x, self.pd_options['precision'])
return x
except:
return x
data = [prec(x) for x in data]
html_formatter = '<p style="background-color:{0}">{1}</p>'
self.df[colname] = [html_formatter.format(x, y)
for x, y in zip(hexcolors, data)] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'list'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'page'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'block', 'children': ['21', '27', '45', '65']},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'schema'},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'LIST_SCHEMA'},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '30', 'type': 'call', 'children': ['31', '36']},{'id': '31', 'type': 'attribute', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '36', 'type': 'argument_list', 'children': ['37', '40', '41', '42', '43', '44']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'page'},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '50']},{'id': '47', 'type': 'pattern_list', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'cs'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '50', 'type': 'call', 'children': ['51', '56']},{'id': '51', 'type': 'attribute', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '56', 'type': 'argument_list', 'children': ['57', '58', '59', '62']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'schema'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'many'},{'id': '61', 'type': 'True', 'children': []},{'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'links'},{'id': '64', 'type': 'True', 'children': []},{'id': '65', 'type': 'return_statement', 'children': ['66']},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'Page'},{'id': '68', 'type': 'argument_list', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'cs'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'l'} | def list(self, filter=None, type=None, sort=None, limit=None, page=None):
schema = self.LIST_SCHEMA
resp = self.service.list(self.base, filter, type, sort, limit, page)
cs, l = self.service.decode(schema, resp, many=True, links=True)
return Page(cs, l) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'signup_handler'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '5', 'type': 'list_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '9', 'type': 'block', 'children': ['10', '20', '27', '36', '45', '70', '79', '302', '313', '331']},{'id': '10', 'type': 'if_statement', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'current_user'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'is_authenticated'},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'return_statement', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'redirect'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'oauth_token'},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'token_getter'},{'id': '25', 'type': 'argument_list', 'children': ['26']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '27', 'type': 'if_statement', 'children': ['28', '30']},{'id': '28', 'type': 'not_operator', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'oauth_token'},{'id': '30', 'type': 'block', 'children': ['31']},{'id': '31', 'type': 'return_statement', 'children': ['32']},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'redirect'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'session_prefix'},{'id': '39', 'type': 'call', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'token_session_key'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '45', 'type': 'if_statement', 'children': ['46', '56']},{'id': '46', 'type': 'not_operator', 'children': ['47']},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '51', 'type': 'argument_list', 'children': ['52', '55']},{'id': '52', 'type': 'binary_operator', 'children': ['53', '54'], 'value': '+'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'session_prefix'},{'id': '54', 'type': 'string', 'children': [], 'value': "'_autoregister'"},{'id': '55', 'type': 'False', 'children': []},{'id': '56', 'type': 'block', 'children': ['57']},{'id': '57', 'type': 'return_statement', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'redirect'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'url_for'},{'id': '63', 'type': 'argument_list', 'children': ['64', '65']},{'id': '64', 'type': 'string', 'children': [], 'value': "'.login'"},{'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'remote_app'},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'form'},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'create_registrationform'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'form'},{'id': '79', 'type': 'if_statement', 'children': ['80', '85']},{'id': '80', 'type': 'call', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'form'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'validate_on_submit'},{'id': '84', 'type': 'argument_list', 'children': []},{'id': '85', 'type': 'block', 'children': ['86', '97', '108', '115', '126', '136', '154', '164', '175', '237', '258', '268', '278', '287']},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'account_info'},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'binary_operator', 'children': ['95', '96'], 'value': '+'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'session_prefix'},{'id': '96', 'type': 'string', 'children': [], 'value': "'_account_info'"},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '100', 'type': 'call', 'children': ['101', '104']},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': 'binary_operator', 'children': ['106', '107'], 'value': '+'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'session_prefix'},{'id': '107', 'type': 'string', 'children': [], 'value': "'_response'"},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'assignment', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '111', 'type': 'call', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'oauth_register'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'form'},{'id': '115', 'type': 'if_statement', 'children': ['116', '119']},{'id': '116', 'type': 'comparison_operator', 'children': ['117', '118'], 'value': 'is'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '118', 'type': 'None', 'children': []},{'id': '119', 'type': 'block', 'children': ['120']},{'id': '120', 'type': 'raise_statement', 'children': ['121']},{'id': '121', 'type': 'call', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'OAuthError'},{'id': '123', 'type': 'argument_list', 'children': ['124', '125']},{'id': '124', 'type': 'string', 'children': [], 'value': "'Could not create user.'"},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '126', 'type': 'expression_statement', 'children': ['127']},{'id': '127', 'type': 'call', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '131', 'type': 'argument_list', 'children': ['132', '135']},{'id': '132', 'type': 'binary_operator', 'children': ['133', '134'], 'value': '+'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'session_prefix'},{'id': '134', 'type': 'string', 'children': [], 'value': "'_autoregister'"},{'id': '135', 'type': 'None', 'children': []},{'id': '136', 'type': 'expression_statement', 'children': ['137']},{'id': '137', 'type': 'assignment', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '139', 'type': 'call', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'token_setter'},{'id': '141', 'type': 'argument_list', 'children': ['142', '143', '146', '151']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '143', 'type': 'subscript', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'oauth_token'},{'id': '145', 'type': 'integer', 'children': [], 'value': '0'},{'id': '146', 'type': 'keyword_argument', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'secret'},{'id': '148', 'type': 'subscript', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'oauth_token'},{'id': '150', 'type': 'integer', 'children': [], 'value': '1'},{'id': '151', 'type': 'keyword_argument', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'assignment', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'handlers'},{'id': '157', 'type': 'subscript', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'current_oauthclient'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'signup_handlers'},{'id': '161', 'type': 'attribute', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '164', 'type': 'if_statement', 'children': ['165', '168']},{'id': '165', 'type': 'comparison_operator', 'children': ['166', '167'], 'value': 'is'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '167', 'type': 'None', 'children': []},{'id': '168', 'type': 'block', 'children': ['169']},{'id': '169', 'type': 'raise_statement', 'children': ['170']},{'id': '170', 'type': 'call', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'OAuthError'},{'id': '172', 'type': 'argument_list', 'children': ['173', '174']},{'id': '173', 'type': 'string', 'children': [], 'value': "'Could not create token for user.'"},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '175', 'type': 'if_statement', 'children': ['176', '182', '227']},{'id': '176', 'type': 'not_operator', 'children': ['177']},{'id': '177', 'type': 'attribute', 'children': ['178', '181']},{'id': '178', 'type': 'attribute', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'remote_account'},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'extra_data'},{'id': '182', 'type': 'block', 'children': ['183', '193', '209', '217']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'assignment', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'account_setup'},{'id': '186', 'type': 'call', 'children': ['187', '190']},{'id': '187', 'type': 'subscript', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'handlers'},{'id': '189', 'type': 'string', 'children': [], 'value': "'setup'"},{'id': '190', 'type': 'argument_list', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '193', 'type': 'expression_statement', 'children': ['194']},{'id': '194', 'type': 'call', 'children': ['195', '198']},{'id': '195', 'type': 'attribute', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'account_setup_received'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'send'},{'id': '198', 'type': 'argument_list', 'children': ['199', '200', '203', '206']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '200', 'type': 'keyword_argument', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '203', 'type': 'keyword_argument', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '206', 'type': 'keyword_argument', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'account_setup'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'account_setup'},{'id': '209', 'type': 'expression_statement', 'children': ['210']},{'id': '210', 'type': 'call', 'children': ['211', '216']},{'id': '211', 'type': 'attribute', 'children': ['212', '215']},{'id': '212', 'type': 'attribute', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'db'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'commit'},{'id': '216', 'type': 'argument_list', 'children': []},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'call', 'children': ['219', '222']},{'id': '219', 'type': 'attribute', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'account_setup_committed'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'send'},{'id': '222', 'type': 'argument_list', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '224', 'type': 'keyword_argument', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'token'},{'id': '227', 'type': 'else_clause', 'children': ['228']},{'id': '228', 'type': 'block', 'children': ['229']},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'call', 'children': ['231', '236']},{'id': '231', 'type': 'attribute', 'children': ['232', '235']},{'id': '232', 'type': 'attribute', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'db'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'commit'},{'id': '236', 'type': 'argument_list', 'children': []},{'id': '237', 'type': 'if_statement', 'children': ['238', '249']},{'id': '238', 'type': 'not_operator', 'children': ['239']},{'id': '239', 'type': 'call', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'oauth_authenticate'},{'id': '241', 'type': 'argument_list', 'children': ['242', '245', '246']},{'id': '242', 'type': 'attribute', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'consumer_key'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '246', 'type': 'keyword_argument', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'require_existing_link'},{'id': '248', 'type': 'False', 'children': []},{'id': '249', 'type': 'block', 'children': ['250']},{'id': '250', 'type': 'return_statement', 'children': ['251']},{'id': '251', 'type': 'call', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'redirect'},{'id': '253', 'type': 'argument_list', 'children': ['254']},{'id': '254', 'type': 'call', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'url_for'},{'id': '256', 'type': 'argument_list', 'children': ['257']},{'id': '257', 'type': 'string', 'children': [], 'value': "'security.login'"},{'id': '258', 'type': 'expression_statement', 'children': ['259']},{'id': '259', 'type': 'call', 'children': ['260', '263']},{'id': '260', 'type': 'attribute', 'children': ['261', '262']},{'id': '261', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '263', 'type': 'argument_list', 'children': ['264', '267']},{'id': '264', 'type': 'binary_operator', 'children': ['265', '266'], 'value': '+'},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'session_prefix'},{'id': '266', 'type': 'string', 'children': [], 'value': "'_account_info'"},{'id': '267', 'type': 'None', 'children': []},{'id': '268', 'type': 'expression_statement', 'children': ['269']},{'id': '269', 'type': 'call', 'children': ['270', '273']},{'id': '270', 'type': 'attribute', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '273', 'type': 'argument_list', 'children': ['274', '277']},{'id': '274', 'type': 'binary_operator', 'children': ['275', '276'], 'value': '+'},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'session_prefix'},{'id': '276', 'type': 'string', 'children': [], 'value': "'_response'"},{'id': '277', 'type': 'None', 'children': []},{'id': '278', 'type': 'expression_statement', 'children': ['279']},{'id': '279', 'type': 'assignment', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'next_url'},{'id': '281', 'type': 'call', 'children': ['282', '283']},{'id': '282', 'type': 'identifier', 'children': [], 'value': 'get_session_next_url'},{'id': '283', 'type': 'argument_list', 'children': ['284']},{'id': '284', 'type': 'attribute', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '287', 'type': 'if_statement', 'children': ['288', '289', '295']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'next_url'},{'id': '289', 'type': 'block', 'children': ['290']},{'id': '290', 'type': 'return_statement', 'children': ['291']},{'id': '291', 'type': 'call', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'redirect'},{'id': '293', 'type': 'argument_list', 'children': ['294']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'next_url'},{'id': '295', 'type': 'else_clause', 'children': ['296']},{'id': '296', 'type': 'block', 'children': ['297']},{'id': '297', 'type': 'return_statement', 'children': ['298']},{'id': '298', 'type': 'call', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'redirect'},{'id': '300', 'type': 'argument_list', 'children': ['301']},{'id': '301', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '302', 'type': 'expression_statement', 'children': ['303']},{'id': '303', 'type': 'assignment', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'account_info'},{'id': '305', 'type': 'call', 'children': ['306', '309']},{'id': '306', 'type': 'attribute', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '309', 'type': 'argument_list', 'children': ['310']},{'id': '310', 'type': 'binary_operator', 'children': ['311', '312'], 'value': '+'},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'session_prefix'},{'id': '312', 'type': 'string', 'children': [], 'value': "'_account_info'"},{'id': '313', 'type': 'if_statement', 'children': ['314', '320']},{'id': '314', 'type': 'not_operator', 'children': ['315']},{'id': '315', 'type': 'call', 'children': ['316', '319']},{'id': '316', 'type': 'attribute', 'children': ['317', '318']},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'form'},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'is_submitted'},{'id': '319', 'type': 'argument_list', 'children': []},{'id': '320', 'type': 'block', 'children': ['321']},{'id': '321', 'type': 'expression_statement', 'children': ['322']},{'id': '322', 'type': 'assignment', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'form'},{'id': '324', 'type': 'call', 'children': ['325', '326']},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'fill_form'},{'id': '326', 'type': 'argument_list', 'children': ['327', '328']},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'form'},{'id': '328', 'type': 'subscript', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'account_info'},{'id': '330', 'type': 'string', 'children': [], 'value': "'user'"},{'id': '331', 'type': 'return_statement', 'children': ['332']},{'id': '332', 'type': 'call', 'children': ['333', '334']},{'id': '333', 'type': 'identifier', 'children': [], 'value': 'render_template'},{'id': '334', 'type': 'argument_list', 'children': ['335', '340', '343', '346', '363', '380']},{'id': '335', 'type': 'subscript', 'children': ['336', '339']},{'id': '336', 'type': 'attribute', 'children': ['337', '338']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'current_app'},{'id': '338', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '339', 'type': 'string', 'children': [], 'value': "'OAUTHCLIENT_SIGNUP_TEMPLATE'"},{'id': '340', 'type': 'keyword_argument', 'children': ['341', '342']},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'form'},{'id': '342', 'type': 'identifier', 'children': [], 'value': 'form'},{'id': '343', 'type': 'keyword_argument', 'children': ['344', '345']},{'id': '344', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '346', 'type': 'keyword_argument', 'children': ['347', '348']},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'app_title'},{'id': '348', 'type': 'call', 'children': ['349', '360']},{'id': '349', 'type': 'attribute', 'children': ['350', '359']},{'id': '350', 'type': 'subscript', 'children': ['351', '356']},{'id': '351', 'type': 'subscript', 'children': ['352', '355']},{'id': '352', 'type': 'attribute', 'children': ['353', '354']},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'current_app'},{'id': '354', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '355', 'type': 'string', 'children': [], 'value': "'OAUTHCLIENT_REMOTE_APPS'"},{'id': '356', 'type': 'attribute', 'children': ['357', '358']},{'id': '357', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '358', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '359', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '360', 'type': 'argument_list', 'children': ['361', '362']},{'id': '361', 'type': 'string', 'children': [], 'value': "'title'"},{'id': '362', 'type': 'string', 'children': [], 'value': "''"},{'id': '363', 'type': 'keyword_argument', 'children': ['364', '365']},{'id': '364', 'type': 'identifier', 'children': [], 'value': 'app_description'},{'id': '365', 'type': 'call', 'children': ['366', '377']},{'id': '366', 'type': 'attribute', 'children': ['367', '376']},{'id': '367', 'type': 'subscript', 'children': ['368', '373']},{'id': '368', 'type': 'subscript', 'children': ['369', '372']},{'id': '369', 'type': 'attribute', 'children': ['370', '371']},{'id': '370', 'type': 'identifier', 'children': [], 'value': 'current_app'},{'id': '371', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '372', 'type': 'string', 'children': [], 'value': "'OAUTHCLIENT_REMOTE_APPS'"},{'id': '373', 'type': 'attribute', 'children': ['374', '375']},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '376', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '377', 'type': 'argument_list', 'children': ['378', '379']},{'id': '378', 'type': 'string', 'children': [], 'value': "'description'"},{'id': '379', 'type': 'string', 'children': [], 'value': "''"},{'id': '380', 'type': 'keyword_argument', 'children': ['381', '382']},{'id': '381', 'type': 'identifier', 'children': [], 'value': 'app_icon'},{'id': '382', 'type': 'call', 'children': ['383', '394']},{'id': '383', 'type': 'attribute', 'children': ['384', '393']},{'id': '384', 'type': 'subscript', 'children': ['385', '390']},{'id': '385', 'type': 'subscript', 'children': ['386', '389']},{'id': '386', 'type': 'attribute', 'children': ['387', '388']},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'current_app'},{'id': '388', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '389', 'type': 'string', 'children': [], 'value': "'OAUTHCLIENT_REMOTE_APPS'"},{'id': '390', 'type': 'attribute', 'children': ['391', '392']},{'id': '391', 'type': 'identifier', 'children': [], 'value': 'remote'},{'id': '392', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '393', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '394', 'type': 'argument_list', 'children': ['395', '396']},{'id': '395', 'type': 'string', 'children': [], 'value': "'icon'"},{'id': '396', 'type': 'None', 'children': []} | def signup_handler(remote, *args, **kwargs):
if current_user.is_authenticated:
return redirect('/')
oauth_token = token_getter(remote)
if not oauth_token:
return redirect('/')
session_prefix = token_session_key(remote.name)
if not session.get(session_prefix + '_autoregister', False):
return redirect(url_for('.login', remote_app=remote.name))
form = create_registrationform(request.form)
if form.validate_on_submit():
account_info = session.get(session_prefix + '_account_info')
response = session.get(session_prefix + '_response')
user = oauth_register(form)
if user is None:
raise OAuthError('Could not create user.', remote)
session.pop(session_prefix + '_autoregister', None)
token = token_setter(remote, oauth_token[0], secret=oauth_token[1],
user=user)
handlers = current_oauthclient.signup_handlers[remote.name]
if token is None:
raise OAuthError('Could not create token for user.', remote)
if not token.remote_account.extra_data:
account_setup = handlers['setup'](token, response)
account_setup_received.send(
remote, token=token, response=response,
account_setup=account_setup
)
db.session.commit()
account_setup_committed.send(remote, token=token)
else:
db.session.commit()
if not oauth_authenticate(remote.consumer_key, user,
require_existing_link=False):
return redirect(url_for('security.login'))
session.pop(session_prefix + '_account_info', None)
session.pop(session_prefix + '_response', None)
next_url = get_session_next_url(remote.name)
if next_url:
return redirect(next_url)
else:
return redirect('/')
account_info = session.get(session_prefix + '_account_info')
if not form.is_submitted():
form = fill_form(form, account_info['user'])
return render_template(
current_app.config['OAUTHCLIENT_SIGNUP_TEMPLATE'],
form=form,
remote=remote,
app_title=current_app.config['OAUTHCLIENT_REMOTE_APPS'][
remote.name].get('title', ''),
app_description=current_app.config['OAUTHCLIENT_REMOTE_APPS'][
remote.name].get('description', ''),
app_icon=current_app.config['OAUTHCLIENT_REMOTE_APPS'][
remote.name].get('icon', None),
) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_csv'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'page'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'block', 'children': ['21']},{'id': '21', 'type': 'return_statement', 'children': ['22']},{'id': '22', 'type': 'attribute', 'children': ['23', '41']},{'id': '23', 'type': 'call', 'children': ['24', '29']},{'id': '24', 'type': 'attribute', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '29', 'type': 'argument_list', 'children': ['30', '33', '34', '35', '36', '37', '38']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'page'},{'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '40', 'type': 'string', 'children': [], 'value': "'csv'"},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'text'} | def list_csv(self, filter=None, type=None, sort=None, limit=None, page=None):
return self.service.list(self.base, filter, type, sort, limit, page, format='csv').text |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_logdir'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'block', 'children': ['13', '19', '41']},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'assignment', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'schema'},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'LogDirFileSchema'},{'id': '18', 'type': 'argument_list', 'children': []},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '22', 'type': 'call', 'children': ['23', '28']},{'id': '23', 'type': 'attribute', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '28', 'type': 'argument_list', 'children': ['29', '39', '40']},{'id': '29', 'type': 'binary_operator', 'children': ['30', '38'], 'value': '+'},{'id': '30', 'type': 'binary_operator', 'children': ['31', '34'], 'value': '+'},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '38', 'type': 'string', 'children': [], 'value': "'/logdir/'"},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '41', 'type': 'return_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '48']},{'id': '43', 'type': 'attribute', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '48', 'type': 'argument_list', 'children': ['49', '50', '51']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'schema'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'resp'},{'id': '51', 'type': 'keyword_argument', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'many'},{'id': '53', 'type': 'True', 'children': []} | def list_logdir(self, id, filter=None, sort=None):
schema = LogDirFileSchema()
resp = self.service.list(self.base+str(id)+'/logdir/', filter, sort)
return self.service.decode(schema, resp, many=True) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_init_report'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '12', '18']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '11']},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '11', 'type': 'list', 'children': [], 'value': '[]'},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'section_names'},{'id': '17', 'type': 'list', 'children': [], 'value': '[]'},{'id': '18', 'type': 'try_statement', 'children': ['19', '86', '90']},{'id': '19', 'type': 'block', 'children': ['20', '60']},{'id': '20', 'type': 'if_statement', 'children': ['21', '33']},{'id': '21', 'type': 'comparison_operator', 'children': ['22', '32'], 'value': 'is'},{'id': '22', 'type': 'call', 'children': ['23', '28']},{'id': '23', 'type': 'attribute', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'isdir'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'directory'},{'id': '32', 'type': 'False', 'children': []},{'id': '33', 'type': 'block', 'children': ['34', '51']},{'id': '34', 'type': 'if_statement', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '38', 'type': 'block', 'children': ['39']},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'string', 'children': [], 'value': '"Created directory {}"'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'directory'},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'mkdir'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'directory'},{'id': '60', 'type': 'for_statement', 'children': ['61', '62', '65']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'this'},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '64', 'type': 'identifier', 'children': [], 'value': '_to_create'},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'try_statement', 'children': ['67', '83']},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'mkdir'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'binary_operator', 'children': ['75', '82'], 'value': '+'},{'id': '75', 'type': 'binary_operator', 'children': ['76', '79'], 'value': '+'},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'directory'},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'this'},{'id': '83', 'type': 'except_clause', 'children': ['84']},{'id': '84', 'type': 'block', 'children': ['85']},{'id': '85', 'type': 'pass_statement', 'children': []},{'id': '86', 'type': 'except_clause', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '88', 'type': 'block', 'children': ['89']},{'id': '89', 'type': 'pass_statement', 'children': []},{'id': '90', 'type': 'finally_clause', 'children': ['91']},{'id': '91', 'type': 'block', 'children': ['92', '101', '115', '134', '154', '160', '199', '256']},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'assignment', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'temp_path'},{'id': '95', 'type': 'call', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'easydev'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'get_package_location'},{'id': '99', 'type': 'argument_list', 'children': ['100']},{'id': '100', 'type': 'string', 'children': [], 'value': '"reports"'},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'augmented_assignment', 'children': ['103', '104'], 'value': '+='},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'temp_path'},{'id': '104', 'type': 'binary_operator', 'children': ['105', '114'], 'value': '+'},{'id': '105', 'type': 'binary_operator', 'children': ['106', '111'], 'value': '+'},{'id': '106', 'type': 'binary_operator', 'children': ['107', '110'], 'value': '+'},{'id': '107', 'type': 'attribute', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '110', 'type': 'string', 'children': [], 'value': '"reports"'},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '114', 'type': 'string', 'children': [], 'value': '"resources"'},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'assignment', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'filenames'},{'id': '118', 'type': 'call', 'children': ['119', '122']},{'id': '119', 'type': 'attribute', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'glob'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'glob'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 'call', 'children': ['124', '129']},{'id': '124', 'type': 'attribute', 'children': ['125', '128']},{'id': '125', 'type': 'attribute', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '129', 'type': 'argument_list', 'children': ['130']},{'id': '130', 'type': 'list', 'children': ['131', '132', '133'], 'value': '[temp_path, "css", "*.css"]'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'temp_path'},{'id': '132', 'type': 'string', 'children': [], 'value': '"css"'},{'id': '133', 'type': 'string', 'children': [], 'value': '"*.css"'},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'augmented_assignment', 'children': ['136', '137'], 'value': '+='},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'filenames'},{'id': '137', 'type': 'call', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'glob'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'glob'},{'id': '141', 'type': 'argument_list', 'children': ['142']},{'id': '142', 'type': 'call', 'children': ['143', '148']},{'id': '143', 'type': 'attribute', 'children': ['144', '147']},{'id': '144', 'type': 'attribute', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '148', 'type': 'argument_list', 'children': ['149']},{'id': '149', 'type': 'list', 'children': ['150', '153'], 'value': "[self.searchpath, '*.css']"},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'searchpath'},{'id': '153', 'type': 'string', 'children': [], 'value': "'*.css'"},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'augmented_assignment', 'children': ['156', '157'], 'value': '+='},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'filenames'},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'extra_css_list'},{'id': '160', 'type': 'for_statement', 'children': ['161', '162', '163']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'filenames'},{'id': '163', 'type': 'block', 'children': ['164', '179']},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'target'},{'id': '167', 'type': 'call', 'children': ['168', '173']},{'id': '168', 'type': 'attribute', 'children': ['169', '172']},{'id': '169', 'type': 'attribute', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'list', 'children': ['175', '178'], 'value': "[self.directory, 'css' ]"},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'directory'},{'id': '178', 'type': 'string', 'children': [], 'value': "'css'"},{'id': '179', 'type': 'if_statement', 'children': ['180', '190']},{'id': '180', 'type': 'comparison_operator', 'children': ['181', '189'], 'value': 'is'},{'id': '181', 'type': 'call', 'children': ['182', '187']},{'id': '182', 'type': 'attribute', 'children': ['183', '186']},{'id': '183', 'type': 'attribute', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'isfile'},{'id': '187', 'type': 'argument_list', 'children': ['188']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'target'},{'id': '189', 'type': 'False', 'children': []},{'id': '190', 'type': 'block', 'children': ['191']},{'id': '191', 'type': 'expression_statement', 'children': ['192']},{'id': '192', 'type': 'call', 'children': ['193', '196']},{'id': '193', 'type': 'attribute', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'shutil'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '196', 'type': 'argument_list', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'target'},{'id': '199', 'type': 'for_statement', 'children': ['200', '201', '205']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '201', 'type': 'list', 'children': ['202', '203', '204'], 'value': '[\'sorttable.js\', \'highlight.pack.js\', "jquery-1.12.3.min.js"]'},{'id': '202', 'type': 'string', 'children': [], 'value': "'sorttable.js'"},{'id': '203', 'type': 'string', 'children': [], 'value': "'highlight.pack.js'"},{'id': '204', 'type': 'string', 'children': [], 'value': '"jquery-1.12.3.min.js"'},{'id': '205', 'type': 'block', 'children': ['206', '222']},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'assignment', 'children': ['208', '209']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'target'},{'id': '209', 'type': 'call', 'children': ['210', '215']},{'id': '210', 'type': 'attribute', 'children': ['211', '214']},{'id': '211', 'type': 'attribute', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '215', 'type': 'argument_list', 'children': ['216']},{'id': '216', 'type': 'list', 'children': ['217', '220', '221'], 'value': "[self.directory, 'js', filename ]"},{'id': '217', 'type': 'attribute', 'children': ['218', '219']},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'directory'},{'id': '220', 'type': 'string', 'children': [], 'value': "'js'"},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '222', 'type': 'if_statement', 'children': ['223', '233']},{'id': '223', 'type': 'comparison_operator', 'children': ['224', '232'], 'value': 'is'},{'id': '224', 'type': 'call', 'children': ['225', '230']},{'id': '225', 'type': 'attribute', 'children': ['226', '229']},{'id': '226', 'type': 'attribute', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'isfile'},{'id': '230', 'type': 'argument_list', 'children': ['231']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'target'},{'id': '232', 'type': 'False', 'children': []},{'id': '233', 'type': 'block', 'children': ['234', '248']},{'id': '234', 'type': 'expression_statement', 'children': ['235']},{'id': '235', 'type': 'assignment', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '237', 'type': 'call', 'children': ['238', '243']},{'id': '238', 'type': 'attribute', 'children': ['239', '242']},{'id': '239', 'type': 'attribute', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '243', 'type': 'argument_list', 'children': ['244']},{'id': '244', 'type': 'list', 'children': ['245', '246', '247'], 'value': '[temp_path, "javascript", filename]'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'temp_path'},{'id': '246', 'type': 'string', 'children': [], 'value': '"javascript"'},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '248', 'type': 'expression_statement', 'children': ['249']},{'id': '249', 'type': 'call', 'children': ['250', '253']},{'id': '250', 'type': 'attribute', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'shutil'},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '253', 'type': 'argument_list', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'target'},{'id': '256', 'type': 'for_statement', 'children': ['257', '258', '261']},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '258', 'type': 'attribute', 'children': ['259', '260']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'extra_js_list'},{'id': '261', 'type': 'block', 'children': ['262', '273', '289']},{'id': '262', 'type': 'expression_statement', 'children': ['263']},{'id': '263', 'type': 'assignment', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '265', 'type': 'call', 'children': ['266', '271']},{'id': '266', 'type': 'attribute', 'children': ['267', '270']},{'id': '267', 'type': 'attribute', 'children': ['268', '269']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '271', 'type': 'argument_list', 'children': ['272']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '273', 'type': 'expression_statement', 'children': ['274']},{'id': '274', 'type': 'assignment', 'children': ['275', '276']},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'target'},{'id': '276', 'type': 'call', 'children': ['277', '282']},{'id': '277', 'type': 'attribute', 'children': ['278', '281']},{'id': '278', 'type': 'attribute', 'children': ['279', '280']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'sep'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '282', 'type': 'argument_list', 'children': ['283']},{'id': '283', 'type': 'list', 'children': ['284', '287', '288'], 'value': "[self.directory, 'js', basename ]"},{'id': '284', 'type': 'attribute', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'directory'},{'id': '287', 'type': 'string', 'children': [], 'value': "'js'"},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '289', 'type': 'if_statement', 'children': ['290', '300']},{'id': '290', 'type': 'comparison_operator', 'children': ['291', '299'], 'value': 'is'},{'id': '291', 'type': 'call', 'children': ['292', '297']},{'id': '292', 'type': 'attribute', 'children': ['293', '296']},{'id': '293', 'type': 'attribute', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'isfile'},{'id': '297', 'type': 'argument_list', 'children': ['298']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'target'},{'id': '299', 'type': 'False', 'children': []},{'id': '300', 'type': 'block', 'children': ['301']},{'id': '301', 'type': 'expression_statement', 'children': ['302']},{'id': '302', 'type': 'call', 'children': ['303', '306']},{'id': '303', 'type': 'attribute', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'shutil'},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '306', 'type': 'argument_list', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'target'} | def _init_report(self):
self.sections = []
self.section_names = []
try:
if os.path.isdir(self.directory) is False:
if self.verbose:
print("Created directory {}".format(self.directory))
os.mkdir(self.directory)
for this in self._to_create:
try:
os.mkdir(self.directory + os.sep + this)
except:
pass
except Exception:
pass
finally:
temp_path = easydev.get_package_location("reports")
temp_path += os.sep + "reports" + os.sep + "resources"
filenames = glob.glob(os.sep.join([temp_path, "css", "*.css"]))
filenames += glob.glob(os.sep.join([self.searchpath, '*.css']))
filenames += self.extra_css_list
for filename in filenames:
target = os.sep.join([self.directory, 'css' ])
if os.path.isfile(target) is False:
shutil.copy(filename, target)
for filename in ['sorttable.js', 'highlight.pack.js', "jquery-1.12.3.min.js"]:
target = os.sep.join([self.directory, 'js', filename ])
if os.path.isfile(target) is False:
filename = os.sep.join([temp_path, "javascript", filename])
shutil.copy(filename, target)
for filename in self.extra_js_list:
basename = os.path.basename(filename)
target = os.sep.join([self.directory, 'js', basename ])
if os.path.isfile(target) is False:
shutil.copy(filename, target) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_instance'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '5', 'type': 'block', 'children': ['6', '271']},{'id': '6', 'type': 'function_definition', 'children': ['7', '8', '14']},{'id': '7', 'type': 'function_name', 'children': [], 'value': 'wrapper'},{'id': '8', 'type': 'parameters', 'children': ['9', '10', '12']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '10', 'type': 'list_splat_pattern', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '12', 'type': 'dictionary_splat_pattern', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '14', 'type': 'block', 'children': ['15', '82', '168', '262']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'func_trans'},{'id': '18', 'type': 'dictionary', 'children': ['19', '24', '29', '34', '39', '44', '49', '54', '61', '68', '75']},{'id': '19', 'type': 'pair', 'children': ['20', '21']},{'id': '20', 'type': 'string', 'children': [], 'value': '"commit"'},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'Manager'},{'id': '24', 'type': 'pair', 'children': ['25', '26']},{'id': '25', 'type': 'string', 'children': [], 'value': '"compare_config"'},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'Manager'},{'id': '29', 'type': 'pair', 'children': ['30', '31']},{'id': '30', 'type': 'string', 'children': [], 'value': '"commit_check"'},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'Manager'},{'id': '34', 'type': 'pair', 'children': ['35', '36']},{'id': '35', 'type': 'string', 'children': [], 'value': '"device_info"'},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'Manager'},{'id': '39', 'type': 'pair', 'children': ['40', '41']},{'id': '40', 'type': 'string', 'children': [], 'value': '"diff_config"'},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'Manager'},{'id': '44', 'type': 'pair', 'children': ['45', '46']},{'id': '45', 'type': 'string', 'children': [], 'value': '"health_check"'},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'Manager'},{'id': '49', 'type': 'pair', 'children': ['50', '51']},{'id': '50', 'type': 'string', 'children': [], 'value': '"interface_errors"'},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'manager'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'Manager'},{'id': '54', 'type': 'pair', 'children': ['55', '56']},{'id': '55', 'type': 'string', 'children': [], 'value': '"op_cmd"'},{'id': '56', 'type': 'attribute', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'paramiko'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'client'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'SSHClient'},{'id': '61', 'type': 'pair', 'children': ['62', '63']},{'id': '62', 'type': 'string', 'children': [], 'value': '"shell_cmd"'},{'id': '63', 'type': 'attribute', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'paramiko'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'client'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'SSHClient'},{'id': '68', 'type': 'pair', 'children': ['69', '70']},{'id': '69', 'type': 'string', 'children': [], 'value': '"scp_pull"'},{'id': '70', 'type': 'attribute', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'paramiko'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'client'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'SSHClient'},{'id': '75', 'type': 'pair', 'children': ['76', '77']},{'id': '76', 'type': 'string', 'children': [], 'value': '"scp_push"'},{'id': '77', 'type': 'attribute', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'paramiko'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'client'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'SSHClient'},{'id': '82', 'type': 'if_statement', 'children': ['83', '94', '137']},{'id': '83', 'type': 'boolean_operator', 'children': ['84', '89'], 'value': 'and'},{'id': '84', 'type': 'comparison_operator', 'children': ['85', '88'], 'value': '=='},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'username'},{'id': '88', 'type': 'string', 'children': [], 'value': '"root"'},{'id': '89', 'type': 'comparison_operator', 'children': ['90', '93'], 'value': '=='},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '92', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '93', 'type': 'string', 'children': [], 'value': '"op_cmd"'},{'id': '94', 'type': 'block', 'children': ['95', '113', '131']},{'id': '95', 'type': 'if_statement', 'children': ['96', '100']},{'id': '96', 'type': 'not_operator', 'children': ['97']},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '99', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '100', 'type': 'block', 'children': ['101', '107']},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'assignment', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '106', 'type': 'string', 'children': [], 'value': '"paramiko"'},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'call', 'children': ['109', '112']},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '112', 'type': 'argument_list', 'children': []},{'id': '113', 'type': 'if_statement', 'children': ['114', '118']},{'id': '114', 'type': 'not_operator', 'children': ['115']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '117', 'type': 'identifier', 'children': [], 'value': '_shell'},{'id': '118', 'type': 'block', 'children': ['119', '125']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '124', 'type': 'string', 'children': [], 'value': '"root"'},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '130', 'type': 'argument_list', 'children': []},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'call', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'shell_to_cli'},{'id': '136', 'type': 'argument_list', 'children': []},{'id': '137', 'type': 'elif_clause', 'children': ['138', '143']},{'id': '138', 'type': 'comparison_operator', 'children': ['139', '142'], 'value': '=='},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '141', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '142', 'type': 'string', 'children': [], 'value': "'shell_cmd'"},{'id': '143', 'type': 'block', 'children': ['144', '162']},{'id': '144', 'type': 'if_statement', 'children': ['145', '149']},{'id': '145', 'type': 'not_operator', 'children': ['146']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '148', 'type': 'identifier', 'children': [], 'value': '_shell'},{'id': '149', 'type': 'block', 'children': ['150', '156']},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'assignment', 'children': ['152', '155']},{'id': '152', 'type': 'attribute', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '155', 'type': 'string', 'children': [], 'value': '"shell"'},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'call', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '161', 'type': 'argument_list', 'children': []},{'id': '162', 'type': 'expression_statement', 'children': ['163']},{'id': '163', 'type': 'call', 'children': ['164', '167']},{'id': '164', 'type': 'attribute', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'cli_to_shell'},{'id': '167', 'type': 'argument_list', 'children': []},{'id': '168', 'type': 'if_statement', 'children': ['169', '180', '212']},{'id': '169', 'type': 'call', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '171', 'type': 'argument_list', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '174', 'type': 'identifier', 'children': [], 'value': '_session'},{'id': '175', 'type': 'subscript', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'func_trans'},{'id': '177', 'type': 'attribute', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '179', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '180', 'type': 'block', 'children': ['181']},{'id': '181', 'type': 'if_statement', 'children': ['182', '189']},{'id': '182', 'type': 'comparison_operator', 'children': ['183', '186'], 'value': 'in'},{'id': '183', 'type': 'attribute', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '185', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '186', 'type': 'list', 'children': ['187', '188'], 'value': "['scp_pull', 'scp_push']"},{'id': '187', 'type': 'string', 'children': [], 'value': "'scp_pull'"},{'id': '188', 'type': 'string', 'children': [], 'value': "'scp_push'"},{'id': '189', 'type': 'block', 'children': ['190']},{'id': '190', 'type': 'if_statement', 'children': ['191', '199']},{'id': '191', 'type': 'not_operator', 'children': ['192']},{'id': '192', 'type': 'call', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '194', 'type': 'argument_list', 'children': ['195', '198']},{'id': '195', 'type': 'attribute', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '197', 'type': 'identifier', 'children': [], 'value': '_scp'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'SCPClient'},{'id': '199', 'type': 'block', 'children': ['200', '206']},{'id': '200', 'type': 'expression_statement', 'children': ['201']},{'id': '201', 'type': 'assignment', 'children': ['202', '205']},{'id': '202', 'type': 'attribute', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '205', 'type': 'string', 'children': [], 'value': '"scp"'},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'call', 'children': ['208', '211']},{'id': '208', 'type': 'attribute', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '211', 'type': 'argument_list', 'children': []},{'id': '212', 'type': 'else_clause', 'children': ['213']},{'id': '213', 'type': 'block', 'children': ['214', '220', '256']},{'id': '214', 'type': 'expression_statement', 'children': ['215']},{'id': '215', 'type': 'call', 'children': ['216', '219']},{'id': '216', 'type': 'attribute', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'disconnect'},{'id': '219', 'type': 'argument_list', 'children': []},{'id': '220', 'type': 'if_statement', 'children': ['221', '226', '233', '248']},{'id': '221', 'type': 'comparison_operator', 'children': ['222', '225'], 'value': '=='},{'id': '222', 'type': 'attribute', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '224', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '225', 'type': 'string', 'children': [], 'value': '"op_cmd"'},{'id': '226', 'type': 'block', 'children': ['227']},{'id': '227', 'type': 'expression_statement', 'children': ['228']},{'id': '228', 'type': 'assignment', 'children': ['229', '232']},{'id': '229', 'type': 'attribute', 'children': ['230', '231']},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '232', 'type': 'string', 'children': [], 'value': '"paramiko"'},{'id': '233', 'type': 'elif_clause', 'children': ['234', '241']},{'id': '234', 'type': 'comparison_operator', 'children': ['235', '238'], 'value': 'in'},{'id': '235', 'type': 'attribute', 'children': ['236', '237']},{'id': '236', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '237', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '238', 'type': 'list', 'children': ['239', '240'], 'value': '["scp_pull", "scp_push"]'},{'id': '239', 'type': 'string', 'children': [], 'value': '"scp_pull"'},{'id': '240', 'type': 'string', 'children': [], 'value': '"scp_push"'},{'id': '241', 'type': 'block', 'children': ['242']},{'id': '242', 'type': 'expression_statement', 'children': ['243']},{'id': '243', 'type': 'assignment', 'children': ['244', '247']},{'id': '244', 'type': 'attribute', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '247', 'type': 'string', 'children': [], 'value': '"scp"'},{'id': '248', 'type': 'else_clause', 'children': ['249']},{'id': '249', 'type': 'block', 'children': ['250']},{'id': '250', 'type': 'expression_statement', 'children': ['251']},{'id': '251', 'type': 'assignment', 'children': ['252', '255']},{'id': '252', 'type': 'attribute', 'children': ['253', '254']},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'conn_type'},{'id': '255', 'type': 'string', 'children': [], 'value': '"ncclient"'},{'id': '256', 'type': 'expression_statement', 'children': ['257']},{'id': '257', 'type': 'call', 'children': ['258', '261']},{'id': '258', 'type': 'attribute', 'children': ['259', '260']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '261', 'type': 'argument_list', 'children': []},{'id': '262', 'type': 'return_statement', 'children': ['263']},{'id': '263', 'type': 'call', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '265', 'type': 'argument_list', 'children': ['266', '267', '269']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '267', 'type': 'list_splat', 'children': ['268']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '269', 'type': 'dictionary_splat', 'children': ['270']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '271', 'type': 'return_statement', 'children': ['272']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'wrapper'} | def check_instance(function):
def wrapper(self, *args, **kwargs):
func_trans = {
"commit": manager.Manager,
"compare_config": manager.Manager,
"commit_check": manager.Manager,
"device_info": manager.Manager,
"diff_config": manager.Manager,
"health_check": manager.Manager,
"interface_errors": manager.Manager,
"op_cmd": paramiko.client.SSHClient,
"shell_cmd": paramiko.client.SSHClient,
"scp_pull": paramiko.client.SSHClient,
"scp_push": paramiko.client.SSHClient
}
if self.username == "root" and function.__name__ == "op_cmd":
if not self._session:
self.conn_type = "paramiko"
self.connect()
if not self._shell:
self.conn_type = "root"
self.connect()
self.shell_to_cli()
elif function.__name__ == 'shell_cmd':
if not self._shell:
self.conn_type = "shell"
self.connect()
self.cli_to_shell()
if isinstance(self._session, func_trans[function.__name__]):
if function.__name__ in ['scp_pull', 'scp_push']:
if not isinstance(self._scp, SCPClient):
self.conn_type = "scp"
self.connect()
else:
self.disconnect()
if function.__name__ == "op_cmd":
self.conn_type = "paramiko"
elif function.__name__ in ["scp_pull", "scp_push"]:
self.conn_type = "scp"
else:
self.conn_type = "ncclient"
self.connect()
return function(self, *args, **kwargs)
return wrapper |
Subsets and Splits