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95472d13___Gene__AAAS__ENSG00000094914___Flags
[Name] AAAS-023 [Transcript ID] ENST00000552161 [bp] 585 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: AAAS (ENSG00000094914)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000094914;r=12:53307456-53324864
36/1438042989443.69_20150728002309-00302-ip-10-236-191-2_427088496_0.json
95472d13___Gene__AAAS__ENSG00000094914___Flags
[Name] AAAS-014 [Transcript ID] ENST00000546572 [bp] 582 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: AAAS (ENSG00000094914)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000094914;r=12:53307456-53324864
36/1438042989443.69_20150728002309-00302-ip-10-236-191-2_427088496_0.json
95472d13___Gene__AAAS__ENSG00000094914___Flags
[Name] AAAS-017 [Transcript ID] ENST00000548880 [bp] 577 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: AAAS (ENSG00000094914)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000094914;r=12:53307456-53324864
36/1438042989443.69_20150728002309-00302-ip-10-236-191-2_427088496_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-001 [Transcript ID] ENST00000308677 [bp] 2677 [Protein] 351aa [Translation ID] ENSP00000309591 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12304 [UniProt] A0A024R7J0 P17612 [RefSeq] NM_002730 NP_002721 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-003 [Transcript ID] ENST00000589994 [bp] 1127 [Protein] 343aa [Translation ID] ENSP00000466651 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS12305 [UniProt] P17612 [RefSeq] NM_207518 NP_997401 [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-002 [Transcript ID] ENST00000590853 [bp] 1101 [Protein] 124aa [Translation ID] ENSP00000466976 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ENJ5 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-006 [Transcript ID] ENST00000593092 [bp] 922 [Protein] 207aa [Translation ID] ENSP00000466289 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] Q15136 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-010 [Transcript ID] ENST00000587372 [bp] 824 [Protein] 251aa [Translation ID] ENSP00000468352 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7ERP6 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-008 [Transcript ID] ENST00000589284 [bp] 403 [Protein] 25aa [Translation ID] ENSP00000466660 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] K7EMV1 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-005 [Transcript ID] ENST00000350356 [bp] 3105 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-007 [Transcript ID] ENST00000587533 [bp] 2095 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:NA
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-004 [Transcript ID] ENST00000536649 [bp] 1524 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
b9160828___PRKACA_002__ENST00000590853___Flags
[Name] PRKACA-009 [Transcript ID] ENST00000588209 [bp] 942 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PRKACA-002 (ENST00000590853)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000072062;r=19:14202848-14228544;t=ENST00000590853
36/1438042988598.68_20150728002308-00199-ip-10-236-191-2_423629085_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
9ffdf5cb_t__PDPK1_010__ENST00000464702___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - cDNA sequence - Transcript: PDPK1-010 (ENST00000464702)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_cDNA?db=core;g=ENSG00000140992;r=16:2587998-2647921;t=ENST00000464702
36/1438042988598.68_20150728002308-00040-ip-10-236-191-2_423391983_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
76cdba85_t__PDPK1_003__ENST00000389224___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Exons - Transcript: PDPK1-003 (ENST00000389224)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Exons?db=core;g=ENSG00000140992;r=16:2588021-2611531;t=ENST00000389224
36/1438042988308.23_20150728002308-00209-ip-10-236-191-2_422631240_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags] 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
6121786c_t__PDPK1_017__ENST00000561962___Biotype
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2 [Biotype]
Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron
[]
Ensembl genome browser 81: Homo sapiens - Not Available - Transcript: PDPK1-017 (ENST00000561962)
Biotype
http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000140992;r=16:2600604-2615615;t=ENST00000561962
36/1438042988598.68_20150728002308-00065-ip-10-236-191-2_425130887_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-001 [Transcript ID] ENST00000342085 [bp] 7241 [Protein] 556aa [Translation ID] ENSP00000344220 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10472 [UniProt] O15530 [RefSeq] NM_002613 NP_002604 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-002 [Transcript ID] ENST00000268673 [bp] 4728 [Protein] 429aa [Translation ID] ENSP00000268673 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS10473 [UniProt] O15530 [RefSeq] NM_031268 NP_112558 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-013 [Transcript ID] ENST00000441549 [bp] 1729 [Protein] 454aa [Translation ID] ENSP00000395357 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS58411 [UniProt] O15530 [RefSeq] NM_001261816 NP_001248745 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-003 [Transcript ID] ENST00000389224 [bp] 2416 [Protein] 529aa [Translation ID] ENSP00000373876 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] E9PER6 [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-008 [Transcript ID] ENST00000461815 [bp] 611 [Protein] 149aa [Translation ID] ENSP00000455551 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BQ10 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-015 [Transcript ID] ENST00000566659 [bp] 451 [Protein] 88aa [Translation ID] ENSP00000455492 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] H3BPW1 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-006 [Transcript ID] ENST00000474706 [bp] 699 [Protein] 35aa [Translation ID] ENSP00000455025 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BNV5 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-007 [Transcript ID] ENST00000492021 [bp] 552 [Protein] 55aa [Translation ID] ENSP00000455684 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BQA3 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-012 [Transcript ID] ENST00000478708 [bp] 445 [Protein] 40aa [Translation ID] ENSP00000455438 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] H3BPR5 [RefSeq] - [Flags]
5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-011 [Transcript ID] ENST00000471311 [bp] 621 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-017 [Transcript ID] ENST00000561962 [bp] 570 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-009 [Transcript ID] ENST00000460496 [bp] 569 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:4
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-016 [Transcript ID] ENST00000462923 [bp] 550 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-010 [Transcript ID] ENST00000464702 [bp] 511 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-018 [Transcript ID] ENST00000569721 [bp] 330 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-005 [Transcript ID] ENST00000491073 [bp] 2387 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
64c8a65d__Gene__PDPK1__ENSG00000140992___Flags
[Name] PDPK1-014 [Transcript ID] ENST00000570136 [bp] 1125 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Gene tree - Gene: PDPK1 (ENSG00000140992)
Flags
http://www.ensembl.org/Homo_sapiens/Gene/Compara_Tree?db=core;g=ENSG00000140992;r=16:2615554-2621342;t=ENST00000464702
36/1438042989443.69_20150728002309-00274-ip-10-236-191-2_421909545_0.json
2a42208e_ene__PIK3C2G__ENSG00000139144___Biotype
[Name] PIK3C2G-202 [Transcript ID] ENST00000538779 [bp] 4963 [Protein] 1486aa [Translation ID] ENSP00000445381 [CCDS] CCDS73452 [UniProt] F5H369 [RefSeq] NM_001288772 NM_001288774 NP_001275701 NP_001275703 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PIK3C2G (ENSG00000139144)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000139144;r=12:18247614-18648416
36/1438042988598.68_20150728002308-00066-ip-10-236-191-2_421465987_0.json
2a42208e_ene__PIK3C2G__ENSG00000139144___Biotype
[Name] PIK3C2G-201 [Transcript ID] ENST00000433979 [bp] 4840 [Protein] 1445aa [Translation ID] ENSP00000404845 [CCDS] CCDS44839 [UniProt] O75747 [RefSeq] NM_004570 NP_004561 [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PIK3C2G (ENSG00000139144)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000139144;r=12:18247614-18648416
36/1438042988598.68_20150728002308-00066-ip-10-236-191-2_421465987_0.json
2a42208e_ene__PIK3C2G__ENSG00000139144___Biotype
[Name] PIK3C2G-002 [Transcript ID] ENST00000266497 [bp] 4764 [Protein] 1445aa [Translation ID] ENSP00000266497 [CCDS] CCDS44839 [UniProt] O75747 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PIK3C2G (ENSG00000139144)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000139144;r=12:18247614-18648416
36/1438042988598.68_20150728002308-00066-ip-10-236-191-2_421465987_0.json
2a42208e_ene__PIK3C2G__ENSG00000139144___Biotype
[Name] PIK3C2G-004 [Transcript ID] ENST00000535651 [bp] 2497 [Protein] 583aa [Translation ID] ENSP00000443850 [CCDS] - [UniProt] F5H7Y7 [RefSeq] - [Flags] Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PIK3C2G (ENSG00000139144)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000139144;r=12:18247614-18648416
36/1438042988598.68_20150728002308-00066-ip-10-236-191-2_421465987_0.json
2a42208e_ene__PIK3C2G__ENSG00000139144___Biotype
[Name] PIK3C2G-005 [Transcript ID] ENST00000536967 [bp] 625 [Protein] 187aa [Translation ID] ENSP00000479145 [CCDS] - [UniProt] A0A087WV31 [RefSeq] - [Flags] 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Genes and/or transcript that contains an open reading frame (ORF).Protein coding
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PIK3C2G (ENSG00000139144)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000139144;r=12:18247614-18648416
36/1438042988598.68_20150728002308-00066-ip-10-236-191-2_421465987_0.json
2a42208e_ene__PIK3C2G__ENSG00000139144___Biotype
[Name] PIK3C2G-003 [Transcript ID] ENST00000546003 [bp] 4559 [Protein] 231aa [Translation ID] ENSP00000441618 [CCDS] - [UniProt] F5GWG6 [RefSeq] - [Flags] Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1 [Biotype]
Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PIK3C2G (ENSG00000139144)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000139144;r=12:18247614-18648416
36/1438042988598.68_20150728002308-00066-ip-10-236-191-2_421465987_0.json
2a42208e_ene__PIK3C2G__ENSG00000139144___Biotype
[Name] PIK3C2G-006 [Transcript ID] ENST00000538458 [bp] 307 [Protein] No protein [Translation ID] - [CCDS] - [UniProt] - [RefSeq] - [Flags] Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3 [Biotype]
Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript
[]
Ensembl genome browser 81: Homo sapiens - Summary - Gene: PIK3C2G (ENSG00000139144)
Biotype
http://www.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000139144;r=12:18247614-18648416
36/1438042988598.68_20150728002308-00066-ip-10-236-191-2_421465987_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-001 [Transcript ID] ENST00000284440 [bp] 1172 [Protein] 223aa [Translation ID] ENSP00000284440 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] NM_004181 NP_004172 [Flags]
Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:1The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-005 [Transcript ID] ENST00000503431 [bp] 917 [Protein] 223aa [Translation ID] ENSP00000422542 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] CCDS3462 [UniProt] P09936 V9HW74 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basicPRINCIPAL1 - APPRIS candidate principal isoform.APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.APPRIS P1
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-009 [Transcript ID] ENST00000508768 [bp] 827 [Protein] 207aa [Translation ID] ENSP00000426895 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RE83 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-012 [Transcript ID] ENST00000512788 [bp] 785 [Protein] 241aa [Translation ID] ENSP00000423623 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6R956 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-007 [Transcript ID] ENST00000514924 [bp] 445 [Protein] 58aa [Translation ID] ENSP00000426634 [Biotype] Genes and/or transcript that contains an open reading frame (ORF).Protein coding [CCDS] - [UniProt] D6RF53 [RefSeq] - [Flags]
3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incompleteTranscript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-002 [Transcript ID] ENST00000512419 [bp] 1119 [Protein] 69aa [Translation ID] ENSP00000425714 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6RJD9 [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-010 [Transcript ID] ENST00000505232 [bp] 748 [Protein] 156aa [Translation ID] ENSP00000423348 [Biotype] Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay [CCDS] - [UniProt] D6R974 [RefSeq] - [Flags]
Transcript Support Level 3, when transcripts are supported by a single EST only.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:3
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-011 [Transcript ID] ENST00000504818 [bp] 726 [Protein] No protein [Translation ID] - [Biotype] Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.Processed transcript [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-003 [Transcript ID] ENST00000381760 [bp] 1578 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-004 [Transcript ID] ENST00000472501 [bp] 1550 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:5
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-006 [Transcript ID] ENST00000514764 [bp] 862 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json
c3e8c8c9_t__UCHL1_004__ENST00000472501___Flags
[Name] UCHL1-008 [Transcript ID] ENST00000510566 [bp] 540 [Protein] No protein [Translation ID] - [Biotype] Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.Retained intron [CCDS] - [UniProt] - [RefSeq] - [Flags]
Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.TSL:2
[]
Ensembl genome browser 81: Homo sapiens - Variation table - Transcript: UCHL1-004 (ENST00000472501)
Flags
http://www.ensembl.org/Homo_sapiens/Transcript/Variation_Transcript/Table?db=core;g=ENSG00000154277;r=4:41258430-41270472;t=ENST00000472501
36/1438042988598.68_20150728002308-00283-ip-10-236-191-2_426161508_0.json