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thepurpleowl

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codequeries

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[ { "content": "# vim: tabstop=4 shiftwidth=4 softtabstop=4\n\n# Copyright 2010-2011 OpenStack, LLC\n# All Rights Reserved.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\"); you may\n# not use this file except in compliance with the License. You may obtain\n# a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT\n# WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the\n# License for the specific language governing permissions and limitations\n# under the License.\n\nimport datetime\n\nfrom glance.common import context\nfrom glance.common import exception\nfrom glance.common import utils\nfrom glance.registry import context as rcontext\nfrom glance.registry.db import api as db_api\nfrom glance.registry.db import models as db_models\nfrom glance.tests.unit import base\nfrom glance.tests import utils as test_utils\n\n\n_gen_uuid = utils.generate_uuid\n\nUUID1 = _gen_uuid()\nUUID2 = _gen_uuid()\n\n\nCONF = {'sql_connection': 'sqlite://',\n 'verbose': False,\n 'debug': False}\n\nFIXTURES = [\n {'id': UUID1,\n 'name': 'fake image #1',\n 'status': 'active',\n 'disk_format': 'ami',\n 'container_format': 'ami',\n 'is_public': False,\n 'created_at': datetime.datetime.utcnow(),\n 'updated_at': datetime.datetime.utcnow(),\n 'deleted_at': None,\n 'deleted': False,\n 'checksum': None,\n 'min_disk': 0,\n 'min_ram': 0,\n 'size': 13,\n 'location': \"swift://user:passwd@acct/container/obj.tar.0\",\n 'properties': {'type': 'kernel'}},\n {'id': UUID2,\n 'name': 'fake image #2',\n 'status': 'active',\n 'disk_format': 'vhd',\n 'container_format': 'ovf',\n 'is_public': True,\n 'created_at': datetime.datetime.utcnow(),\n 'updated_at': datetime.datetime.utcnow(),\n 'deleted_at': None,\n 'deleted': False,\n 'checksum': None,\n 'min_disk': 5,\n 'min_ram': 256,\n 'size': 19,\n 'location': \"file:///tmp/glance-tests/2\",\n 'properties': {}}]\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TestRegistryDb(base.IsolatedUnitTest):\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.TestRegistryDb", "header": "['module', '___EOS___']", "index": 74 }, { "content": " def setUp(self):\n \"\"\"Establish a clean test environment\"\"\"\n super(TestRegistryDb, self).setUp()\n conf = test_utils.TestConfigOpts(CONF)\n self.adm_context = rcontext.RequestContext(is_admin=True)\n self.context = rcontext.RequestContext(is_admin=False)\n db_api.configure_db(conf)\n self.destroy_fixtures()\n self.create_fixtures()", "metadata": "root.TestRegistryDb.setUp", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 76 }, { "content": " def create_fixtures(self):\n for fixture in FIXTURES:\n db_api.image_create(self.adm_context, fixture)", "metadata": "root.TestRegistryDb.create_fixtures", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 86 }, { "content": " def destroy_fixtures(self):\n # Easiest to just drop the models and re-create them...\n db_models.unregister_models(db_api._ENGINE)\n db_models.register_models(db_api._ENGINE)", "metadata": "root.TestRegistryDb.destroy_fixtures", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 90 }, { "content": " def test_image_get(self):\n image = db_api.image_get(self.context, UUID1)\n self.assertEquals(image['id'], FIXTURES[0]['id'])", "metadata": "root.TestRegistryDb.test_image_get", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 95 }, { "content": " def test_image_get_disallow_deleted(self):\n db_api.image_destroy(self.adm_context, UUID1)\n self.assertRaises(exception.NotFound, db_api.image_get,\n self.context, UUID1)", "metadata": "root.TestRegistryDb.test_image_get_disallow_deleted", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 99 }, { "content": " def test_image_get_allow_deleted(self):\n db_api.image_destroy(self.adm_context, UUID1)\n image = db_api.image_get(self.adm_context, UUID1)\n self.assertEquals(image['id'], FIXTURES[0]['id'])", "metadata": "root.TestRegistryDb.test_image_get_allow_deleted", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 104 }, { "content": " def test_image_get_force_allow_deleted(self):\n db_api.image_destroy(self.adm_context, UUID1)\n image = db_api.image_get(self.context, UUID1, force_show_deleted=True)\n self.assertEquals(image['id'], FIXTURES[0]['id'])", "metadata": "root.TestRegistryDb.test_image_get_force_allow_deleted", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 109 }, { "content": " def test_image_get_all(self):\n images = db_api.image_get_all(self.context)\n self.assertEquals(len(images), 2)", "metadata": "root.TestRegistryDb.test_image_get_all", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 114 }, { "content": " def test_image_get_all_marker(self):\n images = db_api.image_get_all(self.context, marker=UUID2)\n self.assertEquals(len(images), 1)", "metadata": "root.TestRegistryDb.test_image_get_all_marker", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 118 }, { "content": " def test_image_get_all_marker_deleted(self):\n \"\"\"Cannot specify a deleted image as a marker.\"\"\"\n db_api.image_destroy(self.adm_context, UUID1)\n filters = {'deleted': False}\n self.assertRaises(exception.NotFound, db_api.image_get_all,\n self.context, marker=UUID1, filters=filters)", "metadata": "root.TestRegistryDb.test_image_get_all_marker_deleted", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 122 }, { "content": " def test_image_get_all_marker_deleted_showing_deleted_as_admin(self):\n \"\"\"Specify a deleted image as a marker if showing deleted images.\"\"\"\n db_api.image_destroy(self.adm_context, UUID1)\n images = db_api.image_get_all(self.adm_context, marker=UUID1)\n self.assertEquals(len(images), 0)", "metadata": "root.TestRegistryDb.test_image_get_all_marker_deleted_showing_deleted_as_admin", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 129 }, { "content": " def test_image_get_all_marker_deleted_showing_deleted(self):\n \"\"\"Specify a deleted image as a marker if showing deleted images.\"\"\"\n db_api.image_destroy(self.adm_context, UUID1)\n filters = {'deleted': True}\n images = db_api.image_get_all(self.context, marker=UUID1,\n filters=filters)\n self.assertEquals(len(images), 0)", "metadata": "root.TestRegistryDb.test_image_get_all_marker_deleted_showing_deleted", "header": "['class', 'TestRegistryDb', '(', 'base', '.', 'IsolatedUnitTest', ')', ':', '___EOS___']", "index": 135 } ]

[ { "span": "from glance.common import context", "start_line": 19, "start_column": 0, "end_line": 19, "end_column": 33 } ]

[]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def test_caution_context_manager_must_rollback_everything_if_error_occurs(self):\n rb1 = MagicMock()\n rb2 = MagicMock()\n rb3 = MagicMock()\n\n with Caution() as caution:\n caution.add_rollback(rb1)\n caution.add_rollback(rb2)\n\n raise Exception()\n\n rb1.assert_called_once_with()\n rb2.assert_called_once_with()\n ok_(not rb3.called)", "metadata": "root.ContextManagersTest.test_caution_context_manager_must_rollback_everything_if_error_occurs", "header": "['class', 'ContextManagersTest', '(', 'PyleaseTest', ')', ':', '___EOS___']", "index": 30 } ]

[ { "span": "rb3 ", "start_line": 33, "start_column": 8, "end_line": 33, "end_column": 11 } ]

[]

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[ { "content": " def wiki_page_added(page):\n \"\"\"Called whenever a new Wiki page is added.\"\"\"", "metadata": "root.IWikiChangeListener.wiki_page_added", "header": "['class', 'IWikiChangeListener', '(', 'Interface', ')', ':', '___EOS___']", "index": 37 }, { "content": " def wiki_page_changed(page, version, t, comment, author, ipnr):\n \"\"\"Called when a page has been modified.\n\n :since 1.0.3: `ipnr` is optional and deprecated, and will\n be removed in 1.3.1\n \"\"\"", "metadata": "root.IWikiChangeListener.wiki_page_changed", "header": "['class', 'IWikiChangeListener', '(', 'Interface', ')', ':', '___EOS___']", "index": 40 }, { "content": " def wiki_page_deleted(page):\n \"\"\"Called when a page has been deleted.\"\"\"", "metadata": "root.IWikiChangeListener.wiki_page_deleted", "header": "['class', 'IWikiChangeListener', '(', 'Interface', ')', ':', '___EOS___']", "index": 47 }, { "content": " def wiki_page_version_deleted(page):\n \"\"\"Called when a version of a page has been deleted.\"\"\"", "metadata": "root.IWikiChangeListener.wiki_page_version_deleted", "header": "['class', 'IWikiChangeListener', '(', 'Interface', ')', ':', '___EOS___']", "index": 50 }, { "content": " def wiki_page_renamed(page, old_name):\n \"\"\"Called when a page has been renamed.\"\"\"", "metadata": "root.IWikiChangeListener.wiki_page_renamed", "header": "['class', 'IWikiChangeListener', '(', 'Interface', ')', ':', '___EOS___']", "index": 53 }, { "content": " def wiki_page_comment_modified(page, old_comment):\n \"\"\"Called when a page comment has been modified.\"\"\"", "metadata": "root.IWikiChangeListener.wiki_page_comment_modified", "header": "['class', 'IWikiChangeListener', '(', 'Interface', ')', ':', '___EOS___']", "index": 56 }, { "content": " def prepare_wiki_page(req, page, fields):\n \"\"\"Validate a wiki page before rendering it.\n\n :param page: is the `WikiPage` being viewed.\n\n :param fields: is a dictionary which contains the wiki `text`\n of the page, initially identical to `page.text` but it can\n eventually be transformed in place before being used as\n input to the formatter.\n \"\"\"", "metadata": "root.IWikiPageManipulator.prepare_wiki_page", "header": "['class', 'IWikiPageManipulator', '(', 'Interface', ')', ':', '___EOS___']", "index": 68 }, { "content": " def validate_wiki_page(req, page):\n \"\"\"Validate a wiki page after it's been populated from user input.\n\n :param page: is the `WikiPage` being edited.\n\n :return: a list of `(field, message)` tuples, one for each\n problem detected. `field` can be `None` to indicate an\n overall problem with the page. Therefore, a return value of\n `[]` means everything is OK.\n \"\"\"", "metadata": "root.IWikiPageManipulator.validate_wiki_page", "header": "['class', 'IWikiPageManipulator', '(', 'Interface', ')', ':', '___EOS___']", "index": 79 }, { "content": " def get_macros():\n \"\"\"Return an iterable that provides the names of the provided macros.\n \"\"\"", "metadata": "root.IWikiMacroProvider.get_macros", "header": "['class', 'IWikiMacroProvider', '(', 'Interface', ')', ':', '___EOS___']", "index": 98 }, { "content": " def get_macro_description(name):\n \"\"\"Return a tuple of a domain name to translate and plain text\n description of the macro or only the description with the specified\n name.\n\n .. versionchanged :: 1.0\n `get_macro_description` can return a domain to translate the\n description.\n \"\"\"", "metadata": "root.IWikiMacroProvider.get_macro_description", "header": "['class', 'IWikiMacroProvider', '(', 'Interface', ')', ':', '___EOS___']", "index": 102 }, { "content": " def is_inline(content):\n \"\"\"Return `True` if the content generated is an inline XHTML element.\n\n .. versionadded :: 1.0\n \"\"\"", "metadata": "root.IWikiMacroProvider.is_inline", "header": "['class', 'IWikiMacroProvider', '(', 'Interface', ')', ':', '___EOS___']", "index": 112 }, { "content": " def expand_macro(formatter, name, content, args=None):\n \"\"\"Called by the formatter when rendering the parsed wiki text.\n\n .. versionadded:: 0.11\n\n .. versionchanged:: 0.12\n added the `args` parameter\n\n :param formatter: the wiki `Formatter` currently processing\n the wiki markup\n\n :param name: is the name by which the macro has been called;\n remember that via `get_macros`, multiple names could be\n associated to this macros. Note that the macro names are\n case sensitive.\n\n :param content: is the content of the macro call. When called\n using macro syntax (`[[Macro(content)]]`), this is the\n string contained between parentheses, usually containing\n macro arguments. When called using wiki processor syntax\n (`{{{!#Macro ...}}}`), it is the content of the processor\n block, that is, the text starting on the line following the\n macro name.\n\n :param args: will be a dictionary containing the named\n parameters passed when using the Wiki processor syntax.\n\n The named parameters can be specified when calling the macro\n using the wiki processor syntax::\n\n {{{#!Macro arg1=value1 arg2=\"value 2\"`\n ... some content ...\n }}}\n\n In this example, `args` will be\n `{'arg1': 'value1', 'arg2': 'value 2'}`\n and `content` will be `\"... some content ...\"`.\n\n If no named parameters are given like in::\n\n {{{#!Macro\n ...\n }}}\n\n then `args` will be `{}`. That makes it possible to\n differentiate the above situation from a call\n made using the macro syntax::\n\n [[Macro(arg1=value1, arg2=\"value 2\", ... some content...)]]\n\n in which case `args` will always be `None`. Here `content`\n will be the\n `\"arg1=value1, arg2=\"value 2\", ... some content...\"` string.\n If like in this example, `content` is expected to contain\n some arguments and named parameters, one can use the\n `parse_args` function to conveniently extract them.\n \"\"\"", "metadata": "root.IWikiMacroProvider.expand_macro", "header": "['class', 'IWikiMacroProvider', '(', 'Interface', ')', ':', '___EOS___']", "index": 118 }, { "content": " def get_wiki_syntax():\n \"\"\"Return an iterable that provides additional wiki syntax.\n\n Additional wiki syntax correspond to a pair of `(regexp, cb)`,\n the `regexp` for the additional syntax and the callback `cb`\n which will be called if there's a match. That function is of\n the form `cb(formatter, ns, match)`.\n \"\"\"", "metadata": "root.IWikiSyntaxProvider.get_wiki_syntax", "header": "['class', 'IWikiSyntaxProvider', '(', 'Interface', ')', ':', '___EOS___']", "index": 180 }, { "content": " def get_link_resolvers():\n \"\"\"Return an iterable over `(namespace, formatter)` tuples.\n\n Each formatter should be a function of the form::\n\n def format(formatter, ns, target, label, fullmatch=None):\n pass\n\n and should return some HTML fragment. The `label` is already\n HTML escaped, whereas the `target` is not. The `fullmatch`\n argument is optional, and is bound to the regexp match object\n for the link.\n \"\"\"", "metadata": "root.IWikiSyntaxProvider.get_link_resolvers", "header": "['class', 'IWikiSyntaxProvider', '(', 'Interface', ')', ':', '___EOS___']", "index": 189 } ]

[ { "span": "def wiki_page_added(page):", "start_line": 37, "start_column": 4, "end_line": 37, "end_column": 30 }, { "span": "def wiki_page_changed(page, version, t, comment, author, ipnr):", "start_line": 40, "start_column": 4, "end_line": 40, "end_column": 67 }, { "span": "def wiki_page_deleted(page):", "start_line": 47, "start_column": 4, "end_line": 47, "end_column": 32 }, { "span": "def wiki_page_version_deleted(page):", "start_line": 50, "start_column": 4, "end_line": 50, "end_column": 40 }, { "span": "def wiki_page_renamed(page, old_name):", "start_line": 53, "start_column": 4, "end_line": 53, "end_column": 42 }, { "span": "def wiki_page_comment_modified(page, old_comment):", "start_line": 56, "start_column": 4, "end_line": 56, "end_column": 54 }, { "span": "def prepare_wiki_page(req, page, fields):", "start_line": 68, "start_column": 4, "end_line": 68, "end_column": 45 }, { "span": "def validate_wiki_page(req, page):", "start_line": 79, "start_column": 4, "end_line": 79, "end_column": 38 }, { "span": "def get_macros():", "start_line": 98, "start_column": 4, "end_line": 98, "end_column": 21 }, { "span": "def get_macro_description(name):", "start_line": 102, "start_column": 4, "end_line": 102, "end_column": 36 }, { "span": "def is_inline(content):", "start_line": 112, "start_column": 4, "end_line": 112, "end_column": 27 }, { "span": "def expand_macro(formatter, name, content, args=None):", "start_line": 118, "start_column": 4, "end_line": 118, "end_column": 58 }, { "span": "def get_wiki_syntax():", "start_line": 180, "start_column": 4, "end_line": 180, "end_column": 26 }, { "span": "def get_link_resolvers():", "start_line": 189, "start_column": 4, "end_line": 189, "end_column": 29 } ]

[]

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"page", " ", "has", " ", "bee", "n", " ", "modifi", "ed", ".", "\\", "10", ";", "\\", "10", ";", " ", " ", " ", " ", ":", "sinc", "e", " ", "1.0", ".3", ":", " ", "`", "ip", "nr", "`", " ", "is", " ", "option", "al", " ", "and", " ", "depre", "cated", ",", " ", "and", " ", "will", "\\", "10", ";", " ", " ", " ", " ", "be", " ", "remove", "d", " ", "in", " ", "1.3", ".1", "\\", "10", ";", " ", " ", " ", " ", "\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "IW", "iki", "Change", "Listener_", "(_", "Interface_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "wiki", "\\u", "page", "\\u", "deleted_", "(_", "page_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "\"\"\"", "Call", "ed", " ", "whe", "n", " ", "a", " ", "page", " ", "has", " ", "bee", "n", " ", "delete", "d", ".\"\"\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "IW", "iki", "Change", "Listener_", "(_", "Interface_", ")_", 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def test(self):\n\n for i in xrange(self.rounds):\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3\n\n 2 < 3\n 2 > 3\n 2 == 3\n 2 > 3\n 2 < 3", "metadata": "root.CompareIntegers.test", "header": "['class', 'CompareIntegers', '(', 'Test', ')', ':', '___EOS___']", "index": 27 }, { "content": " def test(self):\n\n for i in xrange(self.rounds):\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31\n\n 2.1 < 3.31\n 2.1 > 3.31\n 2.1 == 3.31\n 2.1 > 3.31\n 2.1 < 3.31", "metadata": "root.CompareFloats.test", "header": "['class', 'CompareFloats', '(', 'Test', ')', ':', '___EOS___']", "index": 223 }, { "content": " def test(self):\n\n for i in xrange(self.rounds):\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4\n\n 2.1 < 4\n 2.1 > 4\n 2.1 == 4\n 2.1 > 4\n 2.1 < 4", "metadata": "root.CompareFloatsIntegers.test", "header": "['class', 'CompareFloatsIntegers', '(', 'Test', ')', ':', '___EOS___']", "index": 419 }, { "content": " def test(self):\n\n for i in xrange(self.rounds):\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L\n\n 1234567890L < 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L == 3456789012345L\n 1234567890L > 3456789012345L\n 1234567890L < 3456789012345L", "metadata": "root.CompareLongs.test", "header": "['class', 'CompareLongs', '(', 'Test', ')', ':', '___EOS___']", "index": 615 } ]

[ { "span": "2 < 3", "start_line": 31, "start_column": 12, "end_line": 31, "end_column": 17 }, { "span": "2 > 3", "start_line": 32, "start_column": 12, "end_line": 32, "end_column": 17 }, { "span": "2 == 3", "start_line": 33, "start_column": 12, "end_line": 33, "end_column": 18 }, { "span": "2 > 3", "start_line": 34, "start_column": 12, "end_line": 34, "end_column": 17 }, { "span": "2 < 3", "start_line": 35, "start_column": 12, "end_line": 35, "end_column": 17 }, { "span": "2 < 3", "start_line": 37, "start_column": 12, "end_line": 37, "end_column": 17 }, { "span": "2 > 3", "start_line": 38, "start_column": 12, "end_line": 38, "end_column": 17 }, { "span": "2 == 3", "start_line": 39, "start_column": 12, "end_line": 39, "end_column": 18 }, { "span": "2 > 3", "start_line": 40, "start_column": 12, "end_line": 40, "end_column": 17 }, { "span": "2 < 3", "start_line": 41, "start_column": 12, "end_line": 41, "end_column": 17 }, { "span": "2 < 3", "start_line": 43, "start_column": 12, "end_line": 43, "end_column": 17 }, { "span": "2 > 3", "start_line": 44, "start_column": 12, "end_line": 44, "end_column": 17 }, { "span": "2 == 3", "start_line": 45, "start_column": 12, "end_line": 45, "end_column": 18 }, { "span": "2 > 3", "start_line": 46, "start_column": 12, "end_line": 46, "end_column": 17 }, { "span": "2 < 3", "start_line": 47, "start_column": 12, "end_line": 47, "end_column": 17 }, { "span": "2 < 3", "start_line": 49, "start_column": 12, "end_line": 49, "end_column": 17 }, { "span": "2 > 3", "start_line": 50, "start_column": 12, "end_line": 50, "end_column": 17 }, { "span": "2 == 3", "start_line": 51, "start_column": 12, "end_line": 51, "end_column": 18 }, { "span": "2 > 3", "start_line": 52, "start_column": 12, "end_line": 52, "end_column": 17 }, { "span": "2 < 3", "start_line": 53, "start_column": 12, "end_line": 53, "end_column": 17 }, { "span": "2 < 3", "start_line": 55, "start_column": 12, "end_line": 55, "end_column": 17 }, { "span": "2 > 3", "start_line": 56, "start_column": 12, "end_line": 56, "end_column": 17 }, { "span": "2 == 3", "start_line": 57, "start_column": 12, "end_line": 57, "end_column": 18 }, { "span": "2 > 3", "start_line": 58, "start_column": 12, "end_line": 58, "end_column": 17 }, { "span": "2 < 3", "start_line": 59, "start_column": 12, "end_line": 59, "end_column": 17 }, { "span": "2 < 3", "start_line": 61, "start_column": 12, "end_line": 61, "end_column": 17 }, { "span": "2 > 3", "start_line": 62, "start_column": 12, "end_line": 62, "end_column": 17 }, { "span": "2 == 3", "start_line": 63, "start_column": 12, "end_line": 63, "end_column": 18 }, { "span": "2 > 3", "start_line": 64, "start_column": 12, "end_line": 64, "end_column": 17 }, { "span": "2 < 3", "start_line": 65, "start_column": 12, "end_line": 65, "end_column": 17 }, { "span": "2 < 3", "start_line": 67, "start_column": 12, "end_line": 67, "end_column": 17 }, { "span": "2 > 3", "start_line": 68, "start_column": 12, "end_line": 68, "end_column": 17 }, { "span": "2 == 3", "start_line": 69, "start_column": 12, "end_line": 69, "end_column": 18 }, { "span": "2 > 3", "start_line": 70, "start_column": 12, "end_line": 70, "end_column": 17 }, { "span": "2 < 3", "start_line": 71, "start_column": 12, "end_line": 71, "end_column": 17 }, { "span": "2 < 3", "start_line": 73, "start_column": 12, "end_line": 73, "end_column": 17 }, { "span": "2 > 3", "start_line": 74, "start_column": 12, "end_line": 74, "end_column": 17 }, { "span": "2 == 3", "start_line": 75, "start_column": 12, "end_line": 75, "end_column": 18 }, { "span": "2 > 3", "start_line": 76, "start_column": 12, "end_line": 76, "end_column": 17 }, { "span": "2 < 3", "start_line": 77, "start_column": 12, "end_line": 77, "end_column": 17 }, { "span": "2 < 3", "start_line": 79, "start_column": 12, "end_line": 79, "end_column": 17 }, { "span": "2 > 3", "start_line": 80, "start_column": 12, "end_line": 80, "end_column": 17 }, { "span": "2 == 3", "start_line": 81, "start_column": 12, "end_line": 81, "end_column": 18 }, { "span": "2 > 3", "start_line": 82, "start_column": 12, "end_line": 82, "end_column": 17 }, { "span": "2 < 3", "start_line": 83, "start_column": 12, "end_line": 83, "end_column": 17 }, { "span": "2 < 3", "start_line": 85, "start_column": 12, "end_line": 85, "end_column": 17 }, { "span": "2 > 3", "start_line": 86, "start_column": 12, "end_line": 86, "end_column": 17 }, { "span": "2 == 3", "start_line": 87, "start_column": 12, "end_line": 87, "end_column": 18 }, { "span": "2 > 3", "start_line": 88, "start_column": 12, "end_line": 88, "end_column": 17 }, { "span": "2 < 3", "start_line": 89, "start_column": 12, "end_line": 89, "end_column": 17 }, { "span": "2 < 3", "start_line": 91, "start_column": 12, "end_line": 91, "end_column": 17 }, { "span": "2 > 3", "start_line": 92, "start_column": 12, "end_line": 92, "end_column": 17 }, { "span": "2 == 3", "start_line": 93, "start_column": 12, "end_line": 93, "end_column": 18 }, { "span": "2 > 3", "start_line": 94, "start_column": 12, "end_line": 94, "end_column": 17 }, { "span": "2 < 3", "start_line": 95, "start_column": 12, "end_line": 95, "end_column": 17 }, { "span": "2 < 3", "start_line": 97, "start_column": 12, "end_line": 97, "end_column": 17 }, { "span": "2 > 3", "start_line": 98, "start_column": 12, "end_line": 98, "end_column": 17 }, { "span": "2 == 3", "start_line": 99, "start_column": 12, "end_line": 99, "end_column": 18 }, { "span": "2 > 3", "start_line": 100, "start_column": 12, "end_line": 100, "end_column": 17 }, { "span": "2 < 3", "start_line": 101, "start_column": 12, "end_line": 101, "end_column": 17 }, { "span": "2 < 3", "start_line": 103, "start_column": 12, "end_line": 103, "end_column": 17 }, { "span": "2 > 3", "start_line": 104, "start_column": 12, "end_line": 104, "end_column": 17 }, { "span": "2 == 3", "start_line": 105, "start_column": 12, "end_line": 105, "end_column": 18 }, { "span": "2 > 3", "start_line": 106, "start_column": 12, "end_line": 106, "end_column": 17 }, { "span": "2 < 3", "start_line": 107, "start_column": 12, "end_line": 107, "end_column": 17 }, { "span": "2 < 3", "start_line": 109, "start_column": 12, "end_line": 109, "end_column": 17 }, { "span": "2 > 3", "start_line": 110, "start_column": 12, "end_line": 110, "end_column": 17 }, { "span": "2 == 3", "start_line": 111, "start_column": 12, "end_line": 111, "end_column": 18 }, { "span": "2 > 3", "start_line": 112, "start_column": 12, "end_line": 112, "end_column": 17 }, { "span": "2 < 3", "start_line": 113, "start_column": 12, "end_line": 113, "end_column": 17 }, { "span": "2 < 3", "start_line": 115, "start_column": 12, "end_line": 115, "end_column": 17 }, { "span": "2 > 3", "start_line": 116, "start_column": 12, "end_line": 116, "end_column": 17 }, { "span": "2 == 3", "start_line": 117, "start_column": 12, "end_line": 117, "end_column": 18 }, { "span": "2 > 3", "start_line": 118, "start_column": 12, "end_line": 118, "end_column": 17 }, { "span": "2 < 3", "start_line": 119, 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[ { "content": " def do_tail(self, arg):\n if not self.ctl.upcheck():\n return\n \n args = arg.strip().split()\n\n if len(args) < 1:\n self.ctl.output('Error: too few arguments')\n self.help_tail()\n return\n\n elif len(args) > 3:\n self.ctl.output('Error: too many arguments')\n self.help_tail()\n return\n\n modifier = None\n\n if args[0].startswith('-'):\n modifier = args.pop(0)\n\n if len(args) == 1:\n name = args[-1]\n channel = 'stdout'\n else:\n if args:\n name = args[0]\n channel = args[-1].lower()\n if channel not in ('stderr', 'stdout'):\n self.ctl.output('Error: bad channel %r' % channel)\n return\n else:\n self.ctl.output('Error: tail requires process name')\n return\n\n bytes = 1600\n\n if modifier is not None:\n what = modifier[1:]\n if what == 'f':\n bytes = None\n else:\n try:\n bytes = int(what)\n except:\n self.ctl.output('Error: bad argument %s' % modifier)\n return\n\n supervisor = self.ctl.get_supervisor()\n\n if bytes is None:\n return self._tailf('/logtail/%s/%s' % (name, channel))\n\n else:\n try:\n if channel is 'stdout':\n output = supervisor.readProcessStdoutLog(name,\n -bytes, 0)\n else: # if channel is 'stderr'\n output = supervisor.readProcessStderrLog(name,\n -bytes, 0)\n except xmlrpclib.Fault, e:\n template = '%s: ERROR (%s)'\n if e.faultCode == xmlrpc.Faults.NO_FILE:\n self.ctl.output(template % (name, 'no log file'))\n elif e.faultCode == xmlrpc.Faults.FAILED:\n self.ctl.output(template % (name,\n 'unknown error reading log'))\n elif e.faultCode == xmlrpc.Faults.BAD_NAME:\n self.ctl.output(template % (name,\n 'no such process name'))\n else:\n self.ctl.output(output)", "metadata": "root.DefaultControllerPlugin.do_tail", "header": "['class', 'DefaultControllerPlugin', '(', 'ControllerPluginBase', ')', ':', '___EOS___']", "index": 404 }, { "content": " def do_maintail(self, arg):\n if not self.ctl.upcheck():\n return\n \n args = arg.strip().split()\n\n if len(args) > 1:\n self.ctl.output('Error: too many arguments')\n self.help_maintail()\n return\n\n elif len(args) == 1:\n if args[0].startswith('-'):\n what = args[0][1:]\n if what == 'f':\n path = '/mainlogtail'\n return self._tailf(path)\n try:\n what = int(what)\n except:\n self.ctl.output('Error: bad argument %s' % args[0])\n return\n else:\n bytes = what\n else:\n self.ctl.output('Error: bad argument %s' % args[0])\n return\n \n else:\n bytes = 1600\n\n supervisor = self.ctl.get_supervisor()\n\n try:\n output = supervisor.readLog(-bytes, 0)\n except xmlrpclib.Fault, e:\n template = '%s: ERROR (%s)'\n if e.faultCode == xmlrpc.Faults.NO_FILE:\n self.ctl.output(template % ('supervisord', 'no log file'))\n elif e.faultCode == xmlrpc.Faults.FAILED:\n self.ctl.output(template % ('supervisord',\n 'unknown error reading log'))\n else:\n self.ctl.output(output)", "metadata": "root.DefaultControllerPlugin.do_maintail", "header": "['class', 'DefaultControllerPlugin', '(', 'ControllerPluginBase', ')', ':', '___EOS___']", "index": 488 } ]

[ { "span": "except:", "start_line": 448, "start_column": 16, "end_line": 448, "end_column": 23 }, { "span": "except:", "start_line": 507, "start_column": 16, "end_line": 507, "end_column": 23 } ]

[]

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[ { "content": "def label(doc):\n if context_type == 'book':\n try:\n md = metadata[doc]\n return md['title'][0]\n except:\n return doc\n elif context_type == 'page':\n context_md = ctx_md['page']\n where = np.squeeze(np.where(np.in1d(context_md['page_label'], [doc])))\n page_no = context_md['file'][where]\n page_no = page_no.split('/')[-1]\n page_no = page_no.replace('.txt','')\n page_no = int(page_no)\n\n book_label = context_md['book_label'][where]\n md = metadata[book_label]\n try:\n xml = parse_marc(md['fullrecord'].encode('utf8'))\n vol = get_volume_from_marc(xml[0])\n return \"p%s of %s of %s\" % (page_no, vol, md['title'][0])\n except:\n pass\n try:\n return \"p%s of %s\" % (page_no, md['title'][0])\n except:\n return doc", "metadata": "root.label", "header": "['module', '___EOS___']", "index": 39 } ]

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[]

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[ { "content": " def send_replybatch_to_client(self, givenresult, command):\n if self.debug: self.logger.write(\"State\", \"Sending REPLY to CLIENT\")\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: givenresult,\n FLD_REPLYCODE: CR_BATCH,\n FLD_INRESPONSETO: command.clientcommandnumber})\n clientconn = self.connectionpool.get_connection_by_peer(command.client)\n if clientconn == None or clientconn.thesocket == None:\n if self.debug: self.logger.write(\"State\", \"Client connection does not exist.\")\n return\n clientconn.send(clientreply)", "metadata": "root.Replica.send_replybatch_to_client", "header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']", "index": 318 }, { "content": " def send_reply_to_client(self, clientreplycode, givenresult, command):\n if self.debug: self.logger.write(\"State\", \"Sending REPLY to CLIENT\")\n clientreply = create_message(MSG_CLIENTREPLY, self.me,\n {FLD_REPLY: givenresult,\n FLD_REPLYCODE: clientreplycode,\n FLD_INRESPONSETO: command.clientcommandnumber})\n if self.debug: self.logger.write(\"State\", \"Clientreply: %s\" % str(clientreply))\n clientconn = self.connectionpool.get_connection_by_peer(command.client)\n if clientconn == None or clientconn.thesocket == None:\n if self.debug: self.logger.write(\"State\", \"Client connection does not exist.\")\n return\n clientconn.send(clientreply)", "metadata": "root.Replica.send_reply_to_client", "header": "['class', 'Replica', '(', 'Node', ')', ':', '___EOS___']", "index": 330 } ]

[ { "span": "clientconn == None ", "start_line": 325, "start_column": 11, "end_line": 325, "end_column": 29 }, { "span": "clientconn.thesocket == None:", "start_line": 325, "start_column": 33, "end_line": 325, "end_column": 61 }, { "span": "clientconn == None ", "start_line": 338, "start_column": 11, "end_line": 338, "end_column": 29 }, { "span": "clientconn.thesocket == None:", "start_line": 338, "start_column": 33, "end_line": 338, "end_column": 61 } ]

[]

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[ { "content": " def test_publish_works_with_descendants(self):\n \"\"\"\n For help understanding what this tests for, see:\n http://articles.sitepoint.com/print/hierarchical-data-database\n\n Creates this published structure:\n home\n / \\\n item1 item2\n / \\\n subitem1 subitem2\n \"\"\"\n home_page = create_page(\"home\", \"nav_playground.html\", \"en\",\n published=True, in_navigation=False)\n\n create_page(\"item1\", \"nav_playground.html\", \"en\", parent=home_page,\n published=True)\n item2 = create_page(\"item2\", \"nav_playground.html\", \"en\", parent=home_page,\n published=True)\n\n create_page(\"subitem1\", \"nav_playground.html\", \"en\", parent=item2,\n published=True)\n create_page(\"subitem2\", \"nav_playground.html\", \"en\", parent=item2,\n published=True)\n item2 = item2.reload()\n not_drafts = list(Page.objects.filter(publisher_is_draft=False).order_by('path'))\n drafts = list(Page.objects.filter(publisher_is_draft=True).order_by('path'))\n\n self.assertEqual(len(not_drafts), 5)\n self.assertEqual(len(drafts), 5)\n\n for idx, draft in enumerate(drafts):\n public = not_drafts[idx]\n # Check that a node doesn't become a root node magically\n self.assertEqual(bool(public.parent_id), bool(draft.parent_id))\n if public.parent:\n self.assertEqual(public.path[0:4], public.parent.path[0:4])\n self.assertTrue(public.parent in public.get_ancestors())\n self.assertTrue(public in public.parent.get_descendants())\n self.assertTrue(public in public.parent.get_children())\n if draft.parent:\n # Same principle for the draft tree\n self.assertEqual(draft.path[0:4], draft.parent.path[0:4])\n self.assertTrue(draft.parent in draft.get_ancestors())\n self.assertTrue(draft in draft.parent.get_descendants())\n self.assertTrue(draft in draft.parent.get_children())\n\n # Now call publish again. The structure should not change.\n item2.publish('en')\n\n not_drafts = list(Page.objects.filter(publisher_is_draft=False).order_by('path'))\n drafts = list(Page.objects.filter(publisher_is_draft=True).order_by('path'))\n\n self.assertEqual(len(not_drafts), 5)\n self.assertEqual(len(drafts), 5)\n\n for idx, draft in enumerate(drafts):\n public = not_drafts[idx]\n # Check that a node doesn't become a root node magically\n self.assertEqual(bool(public.parent_id), bool(draft.parent_id))\n self.assertEqual(public.numchild, draft.numchild)\n if public.parent:\n self.assertEqual(public.path[0:4], public.parent.path[0:4])\n self.assertTrue(public.parent in public.get_ancestors())\n self.assertTrue(public in public.parent.get_descendants())\n self.assertTrue(public in public.parent.get_children())\n if draft.parent:\n self.assertEqual(draft.path[0:4], draft.parent.path[0:4])\n self.assertTrue(draft.parent in draft.get_ancestors())\n self.assertTrue(draft in draft.parent.get_descendants())\n self.assertTrue(draft in draft.parent.get_children())", "metadata": "root.PublishingTests.test_publish_works_with_descendants", "header": "['class', 'PublishingTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 930 } ]

[ { "span": "self.assertTrue(public.parent in public.get_ancestors())", "start_line": 967, "start_column": 16, "end_line": 967, "end_column": 72 }, { "span": "self.assertTrue(public in public.parent.get_descendants())", "start_line": 968, "start_column": 16, "end_line": 968, "end_column": 74 }, { "span": "self.assertTrue(public in public.parent.get_children())", "start_line": 969, "start_column": 16, "end_line": 969, "end_column": 71 }, { "span": "self.assertTrue(draft.parent in draft.get_ancestors())", "start_line": 973, "start_column": 16, "end_line": 973, "end_column": 70 }, { "span": "self.assertTrue(draft in draft.parent.get_descendants())", "start_line": 974, "start_column": 16, "end_line": 974, "end_column": 72 }, { "span": "self.assertTrue(draft in draft.parent.get_children())", "start_line": 975, "start_column": 16, "end_line": 975, "end_column": 69 }, { "span": "self.assertTrue(public.parent in public.get_ancestors())", "start_line": 993, "start_column": 16, "end_line": 993, "end_column": 72 }, { "span": "self.assertTrue(public in public.parent.get_descendants())", "start_line": 994, "start_column": 16, "end_line": 994, "end_column": 74 }, { "span": "self.assertTrue(public in public.parent.get_children())", "start_line": 995, "start_column": 16, "end_line": 995, "end_column": 71 }, { "span": "self.assertTrue(draft.parent in draft.get_ancestors())", "start_line": 998, "start_column": 16, "end_line": 998, "end_column": 70 }, { "span": "self.assertTrue(draft in draft.parent.get_descendants())", "start_line": 999, "start_column": 16, "end_line": 999, "end_column": 72 }, { "span": "self.assertTrue(draft in draft.parent.get_children())", "start_line": 1000, "start_column": 16, "end_line": 1000, "end_column": 69 } ]

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[ { "content": "################################################################################\n# Copyright (C) 2014 Jaakko Luttinen\n#\n# This file is licensed under the MIT License.\n################################################################################\n\n\n\"\"\"\nUnit tests for `multinomial` module.\n\"\"\"\n\nimport numpy as np\nimport scipy\n\nfrom bayespy.nodes import (Multinomial,\n Dirichlet,\n Mixture)\n\nfrom bayespy.utils import random\n\nfrom bayespy.utils.misc import TestCase\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TestMultinomial(TestCase):\n \"\"\"\n Unit tests for Multinomial node\n \"\"\"\n\n \n\n \n\n\n\n ", "metadata": "root.TestMultinomial", "header": "['module', '___EOS___']", "index": 23 }, { "content": " def test_init(self):\n \"\"\"\n Test the creation of multinomial nodes.\n \"\"\"\n\n # Some simple initializations\n X = Multinomial(10, [0.1, 0.3, 0.6])\n X = Multinomial(10, Dirichlet([5,4,3]))\n\n # Check that plates are correct\n X = Multinomial(10, [0.1, 0.3, 0.6], plates=(3,4))\n self.assertEqual(X.plates,\n (3,4))\n X = Multinomial(10, 0.25*np.ones((2,3,4)))\n self.assertEqual(X.plates,\n (2,3))\n n = 10 * np.ones((3,4), dtype=np.int)\n X = Multinomial(n, [0.1, 0.3, 0.6])\n self.assertEqual(X.plates,\n (3,4))\n X = Multinomial(n, Dirichlet([2,1,9], plates=(3,4)))\n self.assertEqual(X.plates,\n (3,4))\n \n\n # Probabilities not a vector\n self.assertRaises(ValueError,\n Multinomial,\n 10,\n 0.5)\n\n # Invalid probability\n self.assertRaises(ValueError,\n Multinomial,\n 10,\n [-0.5, 1.5])\n self.assertRaises(ValueError,\n Multinomial,\n 10,\n [0.5, 1.5])\n\n # Invalid number of trials\n self.assertRaises(ValueError,\n Multinomial,\n -1,\n [0.5, 0.5])\n self.assertRaises(ValueError,\n Multinomial,\n 8.5,\n [0.5, 0.5])\n\n # Inconsistent plates\n self.assertRaises(ValueError,\n Multinomial,\n 10,\n 0.25*np.ones((2,4)),\n plates=(3,))\n\n # Explicit plates too small\n self.assertRaises(ValueError,\n Multinomial,\n 10,\n 0.25*np.ones((2,4)),\n plates=(1,))\n\n pass", "metadata": "root.TestMultinomial.test_init", "header": "['class', 'TestMultinomial', '(', 'TestCase', ')', ':', '___EOS___']", "index": 29 }, { "content": " def test_moments(self):\n \"\"\"\n Test the moments of multinomial nodes.\n \"\"\"\n\n # Simple test\n X = Multinomial(1, [0.7,0.2,0.1])\n u = X._message_to_child()\n self.assertEqual(len(u), 1)\n self.assertAllClose(u[0],\n [0.7,0.2,0.1])\n\n # Test n\n X = Multinomial(10, [0.7,0.2,0.1])\n u = X._message_to_child()\n self.assertAllClose(u[0],\n [7,2,1])\n\n # Test plates in p\n n = np.random.randint(1, 10)\n p = np.random.dirichlet([1,1], size=3)\n X = Multinomial(n, p)\n u = X._message_to_child()\n self.assertAllClose(u[0],\n p*n)\n \n # Test plates in n\n n = np.random.randint(1, 10, size=(3,))\n p = np.random.dirichlet([1,1,1,1])\n X = Multinomial(n, p)\n u = X._message_to_child()\n self.assertAllClose(u[0],\n p*n[:,None])\n\n # Test plates in p and n\n n = np.random.randint(1, 10, size=(4,1))\n p = np.random.dirichlet([1,1], size=3)\n X = Multinomial(n, p)\n u = X._message_to_child()\n self.assertAllClose(u[0],\n p*n[...,None])\n\n # Test with Dirichlet prior\n P = Dirichlet([7, 3])\n logp = P._message_to_child()[0]\n p0 = np.exp(logp[0]) / (np.exp(logp[0]) + np.exp(logp[1]))\n p1 = np.exp(logp[1]) / (np.exp(logp[0]) + np.exp(logp[1]))\n X = Multinomial(1, P)\n u = X._message_to_child()\n p = np.array([p0, p1])\n self.assertAllClose(u[0],\n p)\n\n # Test with broadcasted plates\n P = Dirichlet([7, 3], plates=(10,))\n X = Multinomial(5, P)\n u = X._message_to_child()\n self.assertAllClose(u[0] * np.ones(X.get_shape(0)),\n 5*p*np.ones((10,1)))\n\n pass", "metadata": "root.TestMultinomial.test_moments", "header": "['class', 'TestMultinomial', '(', 'TestCase', ')', ':', '___EOS___']", "index": 97 }, { "content": " def test_lower_bound(self):\n \"\"\"\n Test lower bound for multinomial node.\n \"\"\"\n\n # Test for a bug found in multinomial\n X = Multinomial(10, [0.3, 0.5, 0.2])\n l = X.lower_bound_contribution()\n self.assertAllClose(l, 0.0)\n \n pass", "metadata": "root.TestMultinomial.test_lower_bound", "header": "['class', 'TestMultinomial', '(', 'TestCase', ')', ':', '___EOS___']", "index": 160 }, { "content": " def test_mixture(self):\n \"\"\"\n Test multinomial mixture\n \"\"\"\n\n p0 = [0.1, 0.5, 0.2, 0.2]\n p1 = [0.5, 0.1, 0.1, 0.3]\n p2 = [0.3, 0.2, 0.1, 0.4]\n X = Mixture(2, Multinomial, 10, [p0, p1, p2])\n u = X._message_to_child()\n self.assertAllClose(u[0],\n 10*np.array(p2))\n\n pass", "metadata": "root.TestMultinomial.test_mixture", "header": "['class', 'TestMultinomial', '(', 'TestCase', ')', ':', '___EOS___']", "index": 173 } ]

[ { "span": "import scipy", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 12 }, { "span": "from bayespy.utils import random", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 32 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def test_int(self):\n self.assertEqual(self.sd.int(min_value=5, max_value=5), 5)\n\n self.assertTrue(self.sd.int(min_value=1000000000) >= 1000000000)\n self.assertTrue(self.sd.int(max_value=3) <= 3)\n\n self.assertTrue(isinstance(self.sd.int(), int))\n\n val = self.sd.int(5, 10)\n self.assertTrue(val <= 10)\n self.assertTrue(val >= 5)\n\n with self.assertRaises(ParameterError):\n self.sd.int(10, 5)", "metadata": "root.TestNumberHelpers.test_int", "header": "['class', 'TestNumberHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 31 }, { "content": " def test_number(self):\n self.assertTrue(len(str(self.sd.number(5))) <= 5)\n\n with self.assertRaises(ParameterError):\n self.sd.number(0)\n\n with self.assertRaises(ParameterError):\n self.sd.number(-1)", "metadata": "root.TestNumberHelpers.test_number", "header": "['class', 'TestNumberHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 46 }, { "content": " def test_float(self):\n value = self.sd.float(1, 5)\n self.assertTrue(isinstance(value, float))\n self.assertTrue(value >= 1)\n self.assertTrue(value <= 5)\n\n self.assertEqual(self.sd.float(0, 0), 0)\n self.assertEqual(self.sd.float(5, 5), 5)\n self.assertEqual(self.sd.float(-5, -5), -5)\n\n with self.assertRaises(ParameterError):\n self.sd.float(10, 5)", "metadata": "root.TestNumberHelpers.test_float", "header": "['class', 'TestNumberHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 64 }, { "content": " def test_char(self):\n value = self.sd.char()\n self.assertTrue(isinstance(value, six.string_types))\n self.assertTrue(value in string.ascii_letters)", "metadata": "root.TestTextHelpers.test_char", "header": "['class', 'TestTextHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 93 }, { "content": " def test_chars(self):\n value = self.sd.chars()\n self.assertTrue(isinstance(value, six.string_types))\n self.assertTrue(len(value) >= 1)\n self.assertTrue(len(value) <= 5)\n\n value = self.sd.chars(5, 5)\n self.assertTrue(len(value) == 5)\n\n self.assertEqual(self.sd.chars(0, 0), '')\n\n with self.assertRaises(ParameterError):\n value = self.sd.chars(10, 5)", "metadata": "root.TestTextHelpers.test_chars", "header": "['class', 'TestTextHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 98 }, { "content": " def test_words(self):\n value = self.sd.words()\n self.assertTrue(isinstance(value, six.string_types))\n self.assertTrue(len(value.split(' ')) >= 1)\n self.assertTrue(len(value.split(' ')) <= 5)\n\n value = self.sd.words(5, 5)\n self.assertTrue(len(value.split(' ')) == 5)\n\n self.assertEqual(self.sd.words(0, 0), '')\n\n with self.assertRaises(ParameterError):\n value = self.sd.words(10, 5)", "metadata": "root.TestTextHelpers.test_words", "header": "['class', 'TestTextHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 116 }, { "content": " def test_sentence(self):\n for x in range(1, 10):\n value = self.sd.sentence()\n self.assertTrue(isinstance(value, six.string_types))\n self.assertTrue(len(value) <= 255)", "metadata": "root.TestTextHelpers.test_sentence", "header": "['class', 'TestTextHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 138 }, { "content": " def test_short_sentence(self):\n for x in range(1, 10):\n value = self.sd.short_sentence()\n self.assertTrue(isinstance(value, six.string_types))\n self.assertTrue(len(value) <= 100)", "metadata": "root.TestTextHelpers.test_short_sentence", "header": "['class', 'TestTextHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 144 }, { "content": " def test_long_sentence(self):\n for x in range(1, 10):\n value = self.sd.long_sentence()\n self.assertTrue(isinstance(value, six.string_types))\n self.assertTrue(len(value) >= 150)", "metadata": "root.TestTextHelpers.test_long_sentence", "header": "['class', 'TestTextHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 150 }, { "content": " def test_paragraphs(self):\n for x in range(1, 10):\n value = self.sd.paragraphs()\n self.assertTrue(isinstance(value, six.string_types))\n\n self.assertTrue(len(value.split('\\n\\n')) >= 1)\n self.assertTrue(len(value.split('\\n\\n')) <= 5)\n\n with self.assertRaises(ParameterError):\n value = self.sd.paragraphs(5, 1)", "metadata": "root.TestTextHelpers.test_paragraphs", "header": "['class', 'TestTextHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 160 }, { "content": " def test_tags(self):\n value = self.sd.tags()\n self.assertTrue(isinstance(value, six.string_types))\n\n value = self.sd.tags(5, 5)\n self.assertEqual(len(value.split(',')), 5)\n\n value = self.sd.tags(5, 5, ['a', 'b', 'c'])\n self.assertTrue(value.split(',')[0] in ['a', 'b', 'c'])\n\n with self.assertRaises(ParameterError):\n value = self.sd.tags(10, 5)", "metadata": "root.TestTextHelpers.test_tags", "header": "['class', 'TestTextHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 182 }, { "content": " def test_date_between(self):\n value = self.sd.date_between(\n datetime.date(year=2000, month=1, day=1),\n datetime.date(year=2001, month=1, day=1),\n )\n self.assertTrue(isinstance(value, datetime.date))\n self.assertTrue(value > datetime.date(year=2000, month=1, day=1))\n self.assertTrue(value < datetime.date(year=2001, month=1, day=1))\n\n with self.assertRaises(ParameterError):\n self.sd.date_between(\n datetime.date(year=2001, month=1, day=1),\n datetime.date(year=2000, month=1, day=1),\n )", "metadata": "root.TestTimeHelpers.test_date_between", "header": "['class', 'TestTimeHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 201 }, { "content": " def test_future_date(self):\n value = self.sd.future_date()\n self.assertTrue(isinstance(value, datetime.date))\n\n self.assertTrue(value >= datetime.date.today())\n self.assertTrue(value <= (datetime.date.today() + datetime.timedelta(days=365)))\n\n value = self.sd.future_date(0, 10)\n self.assertTrue(value >= datetime.date.today())\n self.assertTrue(value <= (datetime.date.today() + datetime.timedelta(days=10)))\n\n with self.assertRaises(ParameterError):\n self.sd.future_date(100, 0)\n\n with self.assertRaises(ParameterError):\n self.sd.future_date(-10, 10)", "metadata": "root.TestTimeHelpers.test_future_date", "header": "['class', 'TestTimeHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 216 }, { "content": " def test_past_date(self):\n value = self.sd.past_date()\n self.assertTrue(isinstance(value, datetime.date))\n\n self.assertTrue(value <= datetime.date.today())\n self.assertTrue(value >= (datetime.date.today() - datetime.timedelta(days=365)))\n\n value = self.sd.past_date(0, 10)\n self.assertTrue(value <= datetime.date.today())\n self.assertTrue(value >= (datetime.date.today() - datetime.timedelta(days=10)))\n\n with self.assertRaises(ParameterError):\n self.sd.past_date(100, 0)\n\n with self.assertRaises(ParameterError):\n self.sd.past_date(-10, 10)", "metadata": "root.TestTimeHelpers.test_past_date", "header": "['class', 'TestTimeHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 233 }, { "content": " def test_datetime_between(self):\n value = self.sd.datetime_between(\n datetime.datetime(year=2000, month=1, day=1),\n datetime.datetime(year=2001, month=1, day=1),\n )\n self.assertTrue(isinstance(value, datetime.datetime))\n self.assertTrue(value > datetime.datetime(year=2000, month=1, day=1))\n self.assertTrue(value < datetime.datetime(year=2001, month=1, day=1))\n\n with self.assertRaises(ParameterError):\n self.sd.datetime_between(\n datetime.datetime(year=2001, month=1, day=1),\n datetime.datetime(year=2000, month=1, day=1),\n )", "metadata": "root.TestTimeHelpers.test_datetime_between", "header": "['class', 'TestTimeHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 250 }, { "content": " def test_future_datetime(self):\n now = datetime.datetime.utcnow().replace(tzinfo=utc)\n value = self.sd.future_datetime()\n self.assertTrue(isinstance(value, datetime.datetime))\n\n self.assertTrue(value >= now)\n self.assertTrue(value <= (now + datetime.timedelta(minutes=1440)))\n\n now = datetime.datetime.utcnow().replace(tzinfo=utc)\n value = self.sd.future_datetime(1, 10)\n self.assertTrue(value >= now)\n self.assertTrue(value <= (now + datetime.timedelta(minutes=10)))\n\n with self.assertRaises(ParameterError):\n self.sd.future_datetime(100, 0)\n\n with self.assertRaises(ParameterError):\n self.sd.future_datetime(-10, 10)", "metadata": "root.TestTimeHelpers.test_future_datetime", "header": "['class', 'TestTimeHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 265 }, { "content": " def test_past_datetime(self):\n value = self.sd.past_datetime()\n self.assertTrue(isinstance(value, datetime.datetime))\n\n self.assertTrue(value <= datetime.datetime.utcnow().replace(tzinfo=utc))\n self.assertTrue(value >= (datetime.datetime.utcnow().replace(tzinfo=utc) - datetime.timedelta(minutes=1440)))\n\n value = self.sd.past_datetime(0, 10)\n self.assertTrue(value <= datetime.datetime.utcnow().replace(tzinfo=utc))\n self.assertTrue(value >= (datetime.datetime.utcnow().replace(tzinfo=utc) - datetime.timedelta(minutes=10)))\n\n with self.assertRaises(ParameterError):\n self.sd.past_datetime(100, 0)\n\n with self.assertRaises(ParameterError):\n self.sd.past_datetime(-10, 10)", "metadata": "root.TestTimeHelpers.test_past_datetime", "header": "['class', 'TestTimeHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 284 }, { "content": " def test_date(self):\n value = self.sd.date()\n self.assertTrue(isinstance(value, datetime.date))\n\n self.assertTrue(value >= (datetime.date.today() - datetime.timedelta(days=365)))\n self.assertTrue(value <= (datetime.date.today() + datetime.timedelta(days=365)))\n\n value = self.sd.date(-10, 10)\n self.assertTrue(value >= (datetime.date.today() - datetime.timedelta(days=10)))\n self.assertTrue(value <= (datetime.date.today() + datetime.timedelta(days=10)))\n\n with self.assertRaises(ParameterError):\n self.sd.date(100, 0)", "metadata": "root.TestTimeHelpers.test_date", "header": "['class', 'TestTimeHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 301 }, { "content": " def test_datetime(self):\n value = self.sd.datetime()\n self.assertTrue(isinstance(value, datetime.datetime))\n\n self.assertTrue(value >= (datetime.datetime.utcnow().replace(tzinfo=utc) - datetime.timedelta(minutes=1440)))\n self.assertTrue(value <= (datetime.datetime.utcnow().replace(tzinfo=utc) + datetime.timedelta(minutes=1440)))\n\n value = self.sd.datetime(-10, 10)\n self.assertTrue(value >= (datetime.datetime.utcnow().replace(tzinfo=utc) - datetime.timedelta(minutes=10)))\n self.assertTrue(value <= (datetime.datetime.utcnow().replace(tzinfo=utc) + datetime.timedelta(minutes=10)))\n\n with self.assertRaises(ParameterError):\n self.sd.datetime(100, 0)", "metadata": "root.TestTimeHelpers.test_datetime", "header": "['class', 'TestTimeHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 315 }, { "content": " def test_state_code(self):\n value = self.sd.state_code('es')\n self.assertTrue(value in ['01', '02', '03', '04', '05', '06', '07',\n '08', '09', '10', '11', '12', '13', '14',\n '15', '16', '17', '18', '19', '20', '21',\n '22', '23', '24', '25', '26', '27', '28',\n '29', '30', '31', '32', '33', '34', '35',\n '36', '37', '38', '39', '40', '41', '42',\n '43', '44', '45', '46', '47', '48', '49',\n '50', '51', '52', 'AD', ])\n\n value = self.sd.state_code('us')\n self.assertTrue(value in ['AL', 'AK', 'AZ', 'AR', 'CA', 'CO', 'CT',\n 'DE', 'FL', 'GA', 'HI', 'ID', 'IL', 'IN',\n 'IA', 'KS', 'KY', 'LA', 'ME', 'MD', 'MA',\n 'MI', 'MN', 'MS', 'MO', 'MT', 'NE', 'NV',\n 'NH', 'NJ', 'NM', 'NY', 'NC', 'ND', 'OH',\n 'OK', 'OR', 'PA', 'RI', 'SC', 'SD', 'TN',\n 'TX', 'UT', 'VT', 'VA', 'WA', 'WV', 'WI',\n 'WY', 'AS', 'DC', 'FM', 'GU', 'MH', 'MP',\n 'PW', 'PR', 'VI', ])\n\n with self.assertRaises(ParameterError):\n self.sd.state_code('invalid-code')", "metadata": "root.TestLocalizedHelpers.test_state_code", "header": "['class', 'TestLocalizedHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 339 }, { "content": " def test_phone(self):\n value = self.sd.phone(locale='es')\n self.assertTrue(isinstance(value, six.string_types))\n self.assertEqual(len(value), 9)\n self.assertTrue(value[0] in ['6', '9'])\n\n value = self.sd.phone(locale='es', country_code=True)\n self.assertTrue(isinstance(value, six.string_types))\n self.assertEqual(len(value), 13)\n self.assertTrue(value[0:5] in ['+34 6', '+34 9'])\n\n with self.assertRaises(ParameterError):\n value = self.sd.phone(locale=\"not-valid-locale\")", "metadata": "root.TestLocalizedHelpers.test_phone", "header": "['class', 'TestLocalizedHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 465 }, { "content": " def test_id_card(self):\n value = self.sd.id_card(locale='es')\n self.assertTrue(isinstance(value, six.string_types))\n self.assertEqual(len(value), 9)\n self.assertTrue(value[8] in \"TRWAGMYFPDXBNJZSQVHLCKET\")\n\n with self.assertRaises(ParameterError):\n value = self.sd.id_card(locale=\"not-valid-locale\")", "metadata": "root.TestLocalizedHelpers.test_id_card", "header": "['class', 'TestLocalizedHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 487 }, { "content": " def test_hex_chars(self):\n value = self.sd.hex_chars()\n self.assertTrue(isinstance(value, six.string_types))\n self.assertTrue(len(value) >= 1)\n self.assertTrue(len(value) <= 5)\n\n value = self.sd.hex_chars(5, 5)\n self.assertTrue(len(value) == 5)\n\n self.assertEqual(self.sd.hex_chars(0, 0), '')\n\n with self.assertRaises(ParameterError):\n value = self.sd.hex_chars(10, 5)", "metadata": "root.TestOtherHelpers.test_hex_chars", "header": "['class', 'TestOtherHelpers', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 585 } ]

[ { "span": "self.assertTrue(self.sd.int(min_value=1000000000) >= 1000000000)", "start_line": 34, "start_column": 8, "end_line": 34, "end_column": 72 }, { "span": "self.assertTrue(self.sd.int(max_value=3) <= 3)", "start_line": 35, "start_column": 8, "end_line": 35, "end_column": 54 }, { "span": "self.assertTrue(val <= 10)", "start_line": 40, "start_column": 8, "end_line": 40, "end_column": 34 }, { "span": "self.assertTrue(val >= 5)", "start_line": 41, "start_column": 8, "end_line": 41, "end_column": 33 }, { "span": "self.assertTrue(len(str(self.sd.number(5))) <= 5)", "start_line": 47, "start_column": 8, "end_line": 47, "end_column": 57 }, { "span": "self.assertTrue(value >= 1)", "start_line": 67, "start_column": 8, "end_line": 67, "end_column": 35 }, { "span": "self.assertTrue(value <= 5)", "start_line": 68, "start_column": 8, "end_line": 68, "end_column": 35 }, { "span": "self.assertTrue(value in string.ascii_letters)", "start_line": 96, "start_column": 8, "end_line": 96, "end_column": 54 }, { "span": "self.assertTrue(len(value) >= 1)", "start_line": 101, "start_column": 8, "end_line": 101, "end_column": 40 }, { "span": "self.assertTrue(len(value) <= 5)", "start_line": 102, "start_column": 8, "end_line": 102, "end_column": 40 }, { "span": "self.assertTrue(len(value) == 5)", "start_line": 105, "start_column": 8, "end_line": 105, "end_column": 40 }, { "span": "self.assertTrue(len(value.split(' ')) >= 1)", "start_line": 119, "start_column": 8, "end_line": 119, "end_column": 51 }, { "span": "self.assertTrue(len(value.split(' ')) <= 5)", "start_line": 120, "start_column": 8, "end_line": 120, "end_column": 51 }, { "span": "self.assertTrue(len(value.split(' ')) == 5)", "start_line": 123, "start_column": 8, "end_line": 123, "end_column": 51 }, { "span": "self.assertTrue(len(value) <= 255)", "start_line": 142, "start_column": 12, "end_line": 142, "end_column": 46 }, { "span": "self.assertTrue(len(value) <= 100)", "start_line": 148, "start_column": 12, "end_line": 148, "end_column": 46 }, { "span": "self.assertTrue(len(value) >= 150)", "start_line": 154, "start_column": 12, "end_line": 154, "end_column": 46 }, { "span": "self.assertTrue(len(value.split('\\n\\n')) >= 1)", "start_line": 165, "start_column": 12, "end_line": 165, "end_column": 58 }, { "span": "self.assertTrue(len(value.split('\\n\\n')) <= 5)", "start_line": 166, "start_column": 12, "end_line": 166, "end_column": 58 }, { "span": "self.assertTrue(value.split(',')[0] in ['a', 'b', 'c'])", "start_line": 190, "start_column": 8, "end_line": 190, "end_column": 63 }, { "span": "self.assertTrue(value > datetime.date(year=2000, month=1, day=1))", "start_line": 207, "start_column": 8, "end_line": 207, "end_column": 73 }, { "span": "self.assertTrue(value < datetime.date(year=2001, month=1, day=1))", "start_line": 208, "start_column": 8, "end_line": 208, "end_column": 73 }, { "span": "self.assertTrue(value >= datetime.date.today())", "start_line": 220, "start_column": 8, "end_line": 220, "end_column": 55 }, { "span": "self.assertTrue(value <= (datetime.date.today() + datetime.timedelta(days=365)))", "start_line": 221, "start_column": 8, "end_line": 221, "end_column": 88 }, { "span": "self.assertTrue(value >= datetime.date.today())", "start_line": 224, "start_column": 8, "end_line": 224, "end_column": 55 }, { "span": "self.assertTrue(value <= (datetime.date.today() + datetime.timedelta(days=10)))", "start_line": 225, "start_column": 8, "end_line": 225, "end_column": 87 }, { "span": "self.assertTrue(value <= datetime.date.today())", "start_line": 237, "start_column": 8, "end_line": 237, "end_column": 55 }, { "span": "self.assertTrue(value >= (datetime.date.today() - datetime.timedelta(days=365)))", "start_line": 238, "start_column": 8, "end_line": 238, "end_column": 88 }, { "span": "self.assertTrue(value <= datetime.date.today())", "start_line": 241, "start_column": 8, "end_line": 241, "end_column": 55 }, { "span": "self.assertTrue(value >= (datetime.date.today() - datetime.timedelta(days=10)))", "start_line": 242, "start_column": 8, "end_line": 242, "end_column": 87 }, { "span": "self.assertTrue(value > datetime.datetime(year=2000, month=1, day=1))", "start_line": 256, "start_column": 8, "end_line": 256, "end_column": 77 }, { "span": "self.assertTrue(value < datetime.datetime(year=2001, month=1, day=1))", "start_line": 257, "start_column": 8, "end_line": 257, "end_column": 77 }, { "span": "self.assertTrue(value >= now)", "start_line": 270, "start_column": 8, "end_line": 270, "end_column": 37 }, { "span": "self.assertTrue(value <= (now + datetime.timedelta(minutes=1440)))", "start_line": 271, "start_column": 8, "end_line": 271, "end_column": 74 }, { "span": "self.assertTrue(value >= now)", "start_line": 275, "start_column": 8, "end_line": 275, "end_column": 37 }, { "span": "self.assertTrue(value <= (now + datetime.timedelta(minutes=10)))", "start_line": 276, "start_column": 8, "end_line": 276, "end_column": 72 }, { "span": "self.assertTrue(value <= datetime.datetime.utcnow().replace(tzinfo=utc))", "start_line": 288, "start_column": 8, "end_line": 288, "end_column": 80 }, { "span": "self.assertTrue(value >= (datetime.datetime.utcnow().replace(tzinfo=utc) - datetime.timedelta(minutes=1440)))", "start_line": 289, "start_column": 8, "end_line": 289, "end_column": 117 }, { "span": "self.assertTrue(value <= datetime.datetime.utcnow().replace(tzinfo=utc))", "start_line": 292, "start_column": 8, "end_line": 292, "end_column": 80 }, { "span": "self.assertTrue(value >= (datetime.datetime.utcnow().replace(tzinfo=utc) - datetime.timedelta(minutes=10)))", "start_line": 293, "start_column": 8, "end_line": 293, "end_column": 115 }, { "span": "self.assertTrue(value >= (datetime.date.today() - datetime.timedelta(days=365)))", "start_line": 305, "start_column": 8, "end_line": 305, "end_column": 88 }, { "span": "self.assertTrue(value <= (datetime.date.today() + datetime.timedelta(days=365)))", "start_line": 306, "start_column": 8, "end_line": 306, "end_column": 88 }, { "span": "self.assertTrue(value >= (datetime.date.today() - datetime.timedelta(days=10)))", "start_line": 309, "start_column": 8, "end_line": 309, "end_column": 87 }, { "span": "self.assertTrue(value <= (datetime.date.today() + datetime.timedelta(days=10)))", "start_line": 310, "start_column": 8, "end_line": 310, "end_column": 87 }, { "span": "self.assertTrue(value >= (datetime.datetime.utcnow().replace(tzinfo=utc) - datetime.timedelta(minutes=1440)))", "start_line": 319, "start_column": 8, "end_line": 319, "end_column": 117 }, { "span": "self.assertTrue(value <= (datetime.datetime.utcnow().replace(tzinfo=utc) + datetime.timedelta(minutes=1440)))", "start_line": 320, "start_column": 8, "end_line": 320, "end_column": 117 }, { "span": "self.assertTrue(value >= (datetime.datetime.utcnow().replace(tzinfo=utc) - datetime.timedelta(minutes=10)))", "start_line": 323, "start_column": 8, "end_line": 323, "end_column": 115 }, { "span": "self.assertTrue(value <= (datetime.datetime.utcnow().replace(tzinfo=utc) + datetime.timedelta(minutes=10)))", "start_line": 324, "start_column": 8, "end_line": 324, "end_column": 115 }, { "span": "self.assertTrue(value in ['01', '02', '03', '04', '05', '06', '07',\n '08', '09', '10', '11', '12', '13', '14',\n '15', '16', '17', '18', '19', '20', '21',\n '22', '23', '24', '25', '26', '27', '28',\n '29', '30', '31', '32', '33', '34', '35',\n '36', '37', '38', '39', '40', '41', '42',\n '43', '44', '45', '46', '47', '48', '49',\n '50', '51', '52', 'AD', ])", "start_line": 341, "start_column": 8, "end_line": 348, "end_column": 60 }, { "span": "self.assertTrue(value in ['AL', 'AK', 'AZ', 'AR', 'CA', 'CO', 'CT',\n 'DE', 'FL', 'GA', 'HI', 'ID', 'IL', 'IN',\n 'IA', 'KS', 'KY', 'LA', 'ME', 'MD', 'MA',\n 'MI', 'MN', 'MS', 'MO', 'MT', 'NE', 'NV',\n 'NH', 'NJ', 'NM', 'NY', 'NC', 'ND', 'OH',\n 'OK', 'OR', 'PA', 'RI', 'SC', 'SD', 'TN',\n 'TX', 'UT', 'VT', 'VA', 'WA', 'WV', 'WI',\n 'WY', 'AS', 'DC', 'FM', 'GU', 'MH', 'MP',\n 'PW', 'PR', 'VI', ])", "start_line": 351, "start_column": 8, "end_line": 359, "end_column": 54 }, { "span": "self.assertTrue(value[0] in ['6', '9'])", "start_line": 469, "start_column": 8, "end_line": 469, "end_column": 47 }, { "span": "self.assertTrue(value[0:5] in ['+34 6', '+34 9'])", "start_line": 474, "start_column": 8, "end_line": 474, "end_column": 57 }, { "span": "self.assertTrue(value[8] in \"TRWAGMYFPDXBNJZSQVHLCKET\")", "start_line": 491, "start_column": 8, "end_line": 491, "end_column": 63 }, { "span": "self.assertTrue(len(value) >= 1)", "start_line": 588, "start_column": 8, "end_line": 588, "end_column": 40 }, { "span": "self.assertTrue(len(value) <= 5)", "start_line": 589, "start_column": 8, "end_line": 589, "end_column": 40 }, { "span": "self.assertTrue(len(value) == 5)", "start_line": 592, "start_column": 8, "end_line": 592, "end_column": 40 } ]

[]

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[ { "content": "def _network_conf(conf_tuples=None, **kwargs):\n '''\n Network configuration defaults\n\n network_profile\n as for containers, we can either call this function\n either with a network_profile dict or network profile name\n in the kwargs\n nic_opts\n overrides or extra nics in the form {nic_name: {set: tings}\n\n '''\n nic = kwargs.get('network_profile', None)\n ret = []\n nic_opts = kwargs.get('nic_opts', {})\n if nic_opts is None:\n # coming from elsewhere\n nic_opts = {}\n if not conf_tuples:\n conf_tuples = []\n old = _get_veths(conf_tuples)\n if not old:\n old = {}\n\n # if we have a profile name, get the profile and load the network settings\n # this will obviously by default look for a profile called \"eth0\"\n # or by what is defined in nic_opts\n # and complete each nic settings by sane defaults\n if nic and isinstance(nic, (six.string_types, dict)):\n nicp = get_network_profile(nic)\n else:\n nicp = {}\n if DEFAULT_NIC not in nicp:\n nicp[DEFAULT_NIC] = {}\n\n kwargs = copy.deepcopy(kwargs)\n gateway = kwargs.pop('gateway', None)\n bridge = kwargs.get('bridge', None)\n if nic_opts:\n for dev, args in six.iteritems(nic_opts):\n ethx = nicp.setdefault(dev, {})\n try:\n ethx = salt.utils.dictupdate.update(ethx, args)\n except AttributeError:\n raise SaltInvocationError('Invalid nic_opts configuration')\n ifs = [a for a in nicp]\n ifs += [a for a in old if a not in nicp]\n ifs.sort()\n gateway_set = False\n for dev in ifs:\n args = nicp.get(dev, {})\n opts = nic_opts.get(dev, {}) if nic_opts else {}\n old_if = old.get(dev, {})\n disable = opts.get('disable', args.get('disable', False))\n if disable:\n continue\n mac = opts.get('mac',\n opts.get('hwaddr',\n args.get('mac',\n args.get('hwaddr', ''))))\n type_ = opts.get('type', args.get('type', ''))\n flags = opts.get('flags', args.get('flags', ''))\n link = opts.get('link', args.get('link', ''))\n ipv4 = opts.get('ipv4', args.get('ipv4', ''))\n ipv6 = opts.get('ipv6', args.get('ipv6', ''))\n infos = salt.utils.odict.OrderedDict([\n ('lxc.network.type', {\n 'test': not type_,\n 'value': type_,\n 'old': old_if.get('lxc.network.type'),\n 'default': 'veth'}),\n ('lxc.network.name', {\n 'test': False,\n 'value': dev,\n 'old': dev,\n 'default': dev}),\n ('lxc.network.flags', {\n 'test': not flags,\n 'value': flags,\n 'old': old_if.get('lxc.network.flags'),\n 'default': 'up'}),\n ('lxc.network.link', {\n 'test': not link,\n 'value': link,\n 'old': old_if.get('lxc.network.link'),\n 'default': search_lxc_bridge()}),\n ('lxc.network.hwaddr', {\n 'test': not mac,\n 'value': mac,\n 'old': old_if.get('lxc.network.hwaddr'),\n 'default': salt.utils.gen_mac()}),\n ('lxc.network.ipv4', {\n 'test': not ipv4,\n 'value': ipv4,\n 'old': old_if.get('lxc.network.ipv4', ''),\n 'default': None}),\n ('lxc.network.ipv6', {\n 'test': not ipv6,\n 'value': ipv6,\n 'old': old_if.get('lxc.network.ipv6', ''),\n 'default': None})])\n # for each parameter, if not explicitly set, the\n # config value present in the LXC configuration should\n # take precedence over the profile configuration\n for info in list(infos.keys()):\n bundle = infos[info]\n if bundle['test']:\n if bundle['old']:\n bundle['value'] = bundle['old']\n elif bundle['default']:\n bundle['value'] = bundle['default']\n for info, data in six.iteritems(infos):\n if data['value']:\n ret.append({info: data['value']})\n for key, val in six.iteritems(args):\n if key == 'link' and bridge:\n val = bridge\n val = opts.get(key, val)\n if key in [\n 'type', 'flags', 'name',\n 'gateway', 'mac', 'link', 'ipv4', 'ipv6'\n ]:\n continue\n ret.append({'lxc.network.{0}'.format(key): val})\n # gateway (in automode) must be appended following network conf !\n if not gateway:\n gateway = args.get('gateway', None)\n if gateway is not None and not gateway_set:\n ret.append({'lxc.network.ipv4.gateway': gateway})\n # only one network gateway ;)\n gateway_set = True\n # normally, this won't happen\n # set the gateway if specified even if we did\n # not managed the network underlying\n if gateway is not None and not gateway_set:\n ret.append({'lxc.network.ipv4.gateway': gateway})\n # only one network gateway ;)\n gateway_set = True\n\n new = _get_veths(ret)\n # verify that we did not loose the mac settings\n for iface in [a for a in new]:\n ndata = new[iface]\n nmac = ndata.get('lxc.network.hwaddr', '')\n ntype = ndata.get('lxc.network.type', '')\n omac, otype = '', ''\n if iface in old:\n odata = old[iface]\n omac = odata.get('lxc.network.hwaddr', '')\n otype = odata.get('lxc.network.type', '')\n # default for network type is setted here\n # attention not to change the network type\n # without a good and explicit reason to.\n if otype and not ntype:\n ntype = otype\n if not ntype:\n ntype = 'veth'\n new[iface]['lxc.network.type'] = ntype\n if omac and not nmac:\n new[iface]['lxc.network.hwaddr'] = omac\n\n ret = []\n for val in six.itervalues(new):\n for row in val:\n ret.append(salt.utils.odict.OrderedDict([(row, val[row])]))\n # on old versions of lxc, still support the gateway auto mode\n # if we didnt explicitly say no to\n # (lxc.network.ipv4.gateway: auto)\n if (\n distutils.version.LooseVersion(version()) <= '1.0.7' and\n True not in ['lxc.network.ipv4.gateway' in a for a in ret] and\n True in ['lxc.network.ipv4' in a for a in ret]\n ):\n ret.append({'lxc.network.ipv4.gateway': 'auto'})\n return ret", "metadata": "root._network_conf", "header": "['module', '___EOS___']", "index": 701 }, { "content": "def init(name,\n config=None,\n cpuset=None,\n cpushare=None,\n memory=None,\n profile=None,\n network_profile=None,\n nic=_marker,\n nic_opts=None,\n cpu=None,\n autostart=True,\n password=None,\n password_encrypted=None,\n users=None,\n dnsservers=None,\n searchdomains=None,\n bridge=None,\n gateway=None,\n pub_key=None,\n priv_key=None,\n force_install=False,\n unconditional_install=False,\n bootstrap_delay=None,\n bootstrap_args=None,\n bootstrap_shell=None,\n bootstrap_url=None,\n **kwargs):\n '''\n Initialize a new container.\n\n This is a partial idempotent function as if it is already provisioned, we\n will reset a bit the lxc configuration file but much of the hard work will\n be escaped as markers will prevent re-execution of harmful tasks.\n\n name\n Name of the container\n\n image\n A tar archive to use as the rootfs for the container. Conflicts with\n the ``template`` argument.\n\n cpus\n Select a random number of cpu cores and assign it to the cpuset, if the\n cpuset option is set then this option will be ignored\n\n cpuset\n Explicitly define the cpus this container will be bound to\n\n cpushare\n cgroups cpu shares\n\n autostart\n autostart container on reboot\n\n memory\n cgroups memory limit, in MB\n\n .. versionchanged:: 2015.5.0\n If no value is passed, no limit is set. In earlier Salt versions,\n not passing this value causes a 1024MB memory limit to be set, and\n it was necessary to pass ``memory=0`` to set no limit.\n\n gateway\n the ipv4 gateway to use\n the default does nothing more than lxcutils does\n\n bridge\n the bridge to use\n the default does nothing more than lxcutils does\n\n network_profile\n Network profile to use for the container\n\n .. versionadded:: 2015.5.0\n\n nic\n .. deprecated:: 2015.5.0\n Use ``network_profile`` instead\n\n nic_opts\n Extra options for network interfaces, will override\n\n ``{\"eth0\": {\"hwaddr\": \"aa:bb:cc:dd:ee:ff\", \"ipv4\": \"10.1.1.1\", \"ipv6\": \"2001:db8::ff00:42:8329\"}}``\n\n or\n\n ``{\"eth0\": {\"hwaddr\": \"aa:bb:cc:dd:ee:ff\", \"ipv4\": \"10.1.1.1/24\", \"ipv6\": \"2001:db8::ff00:42:8329\"}}``\n\n users\n Users for which the password defined in the ``password`` param should\n be set. Can be passed as a comma separated list or a python list.\n Defaults to just the ``root`` user.\n\n password\n Set the initial password for the users defined in the ``users``\n parameter\n\n password_encrypted : False\n Set to ``True`` to denote a password hash instead of a plaintext\n password\n\n .. versionadded:: 2015.5.0\n\n profile\n A LXC profile (defined in config or pillar).\n This can be either a real profile mapping or a string\n to retrieve it in configuration\n\n start\n Start the newly-created container\n\n dnsservers\n list of dns servers to set in the container, default [] (no setting)\n\n seed\n Seed the container with the minion config. Default: ``True``\n\n install\n If salt-minion is not already installed, install it. Default: ``True``\n\n config\n Optional config parameters. By default, the id is set to\n the name of the container.\n\n master\n salt master (default to minion's master)\n\n master_port\n salt master port (default to minion's master port)\n\n pub_key\n Explicit public key to preseed the minion with (optional).\n This can be either a filepath or a string representing the key\n\n priv_key\n Explicit private key to preseed the minion with (optional).\n This can be either a filepath or a string representing the key\n\n approve_key\n If explicit preseeding is not used;\n Attempt to request key approval from the master. Default: ``True``\n\n path\n path to the container parent directory\n default: /var/lib/lxc (system)\n\n .. versionadded:: 2015.8.0\n\n clone\n .. deprecated:: 2015.5.0\n Use ``clone_from`` instead\n\n clone_from\n Original from which to use a clone operation to create the container.\n Default: ``None``\n\n bootstrap_delay\n Delay in seconds between end of container creation and bootstrapping.\n Useful when waiting for container to obtain a DHCP lease.\n\n .. versionadded:: 2015.5.0\n\n bootstrap_url\n See lxc.bootstrap\n\n bootstrap_shell\n See lxc.bootstrap\n\n bootstrap_args\n See lxc.bootstrap\n\n force_install\n Force installation even if salt-minion is detected,\n this is the way to run vendor bootstrap scripts even\n if a salt minion is already present in the container\n\n unconditional_install\n Run the script even if the container seems seeded\n\n CLI Example:\n\n .. code-block:: bash\n\n salt 'minion' lxc.init name [cpuset=cgroups_cpuset] \\\\\n [cpushare=cgroups_cpushare] [memory=cgroups_memory] \\\\\n [nic=nic_profile] [profile=lxc_profile] \\\\\n [nic_opts=nic_opts] [start=(True|False)] \\\\\n [seed=(True|False)] [install=(True|False)] \\\\\n [config=minion_config] [approve_key=(True|False) \\\\\n [clone_from=original] [autostart=True] \\\\\n [priv_key=/path_or_content] [pub_key=/path_or_content] \\\\\n [bridge=lxcbr0] [gateway=10.0.3.1] \\\\\n [dnsservers[dns1,dns2]] \\\\\n [users=[foo]] [password='secret'] \\\\\n [password_encrypted=(True|False)]\n\n '''\n ret = {'name': name,\n 'changes': {}}\n\n profile = get_container_profile(copy.deepcopy(profile))\n if bool(nic) and nic is not _marker:\n salt.utils.warn_until(\n 'Carbon',\n 'The \\'nic\\' argument to \\'lxc.init\\' has been deprecated, '\n 'please use \\'network_profile\\' instead.'\n )\n network_profile = nic\n if not network_profile:\n network_profile = profile.get('network_profile')\n if not network_profile:\n network_profile = DEFAULT_NIC\n\n try:\n kwargs['clone_from'] = kwargs.pop('clone')\n except KeyError:\n pass\n else:\n salt.utils.warn_until(\n 'Carbon',\n 'The \\'clone\\' argument to \\'lxc.init\\' has been deprecated, '\n 'please use \\'clone_from\\' instead.'\n )\n\n # Changes is a pointer to changes_dict['init']. This method is used so that\n # we can have a list of changes as they are made, providing an ordered list\n # of things that were changed.\n changes_dict = {'init': []}\n changes = changes_dict.get('init')\n\n if users is None:\n users = []\n dusers = ['root']\n for user in dusers:\n if user not in users:\n users.append(user)\n\n kw_overrides = copy.deepcopy(kwargs)\n\n def select(key, default=None):\n kw_overrides_match = kw_overrides.pop(key, _marker)\n profile_match = profile.pop(key, default)\n # let kwarg overrides be the preferred choice\n if kw_overrides_match is _marker:\n return profile_match\n return kw_overrides_match\n\n path = select('path')\n bpath = get_root_path(path)\n state_pre = state(name, path=path)\n tvg = select('vgname')\n vgname = tvg if tvg else __salt__['config.get']('lxc.vgname')\n start_ = select('start', True)\n autostart = select('autostart', autostart)\n seed = select('seed', True)\n install = select('install', True)\n seed_cmd = select('seed_cmd')\n salt_config = _get_salt_config(config, **kwargs)\n approve_key = select('approve_key', True)\n clone_from = select('clone_from')\n if password and password_encrypted is None:\n salt.utils.warn_until(\n 'Carbon',\n 'Starting with the Carbon release, passwords passed to the '\n '\\'lxc.init\\' function will be assumed to be hashed, unless '\n 'password_encrypted=False. Please keep this in mind.'\n )\n password_encrypted = False\n\n # If using a volume group then set up to make snapshot cow clones\n if vgname and not clone_from:\n try:\n kwargs['vgname'] = vgname\n clone_from = _get_base(profile=profile, **kwargs)\n except (SaltInvocationError, CommandExecutionError) as exc:\n ret['comment'] = exc.strerror\n if changes:\n ret['changes'] = changes_dict\n return ret\n if not kwargs.get('snapshot') is False:\n kwargs['snapshot'] = True\n does_exist = exists(name, path=path)\n to_reboot = False\n remove_seed_marker = False\n if does_exist:\n pass\n elif clone_from:\n remove_seed_marker = True\n try:\n clone(name, clone_from, profile=profile, **kwargs)\n changes.append({'create': 'Container cloned'})\n except (SaltInvocationError, CommandExecutionError) as exc:\n if 'already exists' in exc.strerror:\n changes.append({'create': 'Container already exists'})\n else:\n ret['result'] = False\n ret['comment'] = exc.strerror\n if changes:\n ret['changes'] = changes_dict\n return ret\n cfg = _LXCConfig(name=name, network_profile=network_profile,\n nic_opts=nic_opts, bridge=bridge, path=path,\n gateway=gateway, autostart=autostart,\n cpuset=cpuset, cpushare=cpushare, memory=memory)\n old_chunks = read_conf(cfg.path, out_format='commented')\n cfg.write()\n chunks = read_conf(cfg.path, out_format='commented')\n if old_chunks != chunks:\n to_reboot = True\n else:\n remove_seed_marker = True\n cfg = _LXCConfig(network_profile=network_profile,\n nic_opts=nic_opts, cpuset=cpuset, path=path,\n bridge=bridge, gateway=gateway,\n autostart=autostart,\n cpushare=cpushare, memory=memory)\n with cfg.tempfile() as cfile:\n try:\n create(name, config=cfile.name, profile=profile, **kwargs)\n changes.append({'create': 'Container created'})\n except (SaltInvocationError, CommandExecutionError) as exc:\n if 'already exists' in exc.strerror:\n changes.append({'create': 'Container already exists'})\n else:\n ret['comment'] = exc.strerror\n if changes:\n ret['changes'] = changes_dict\n return ret\n cpath = os.path.join(bpath, name, 'config')\n old_chunks = []\n if os.path.exists(cpath):\n old_chunks = read_conf(cpath, out_format='commented')\n new_cfg = _config_list(conf_tuples=old_chunks,\n cpu=cpu,\n network_profile=network_profile,\n nic_opts=nic_opts, bridge=bridge,\n cpuset=cpuset, cpushare=cpushare,\n memory=memory)\n if new_cfg:\n edit_conf(cpath, out_format='commented', lxc_config=new_cfg)\n chunks = read_conf(cpath, out_format='commented')\n if old_chunks != chunks:\n to_reboot = True\n\n # last time to be sure any of our property is correctly applied\n cfg = _LXCConfig(name=name, network_profile=network_profile,\n nic_opts=nic_opts, bridge=bridge, path=path,\n gateway=gateway, autostart=autostart,\n cpuset=cpuset, cpushare=cpushare, memory=memory)\n old_chunks = []\n if os.path.exists(cfg.path):\n old_chunks = read_conf(cfg.path, out_format='commented')\n cfg.write()\n chunks = read_conf(cfg.path, out_format='commented')\n if old_chunks != chunks:\n changes.append({'config': 'Container configuration updated'})\n to_reboot = True\n\n if to_reboot:\n try:\n stop(name, path=path)\n except (SaltInvocationError, CommandExecutionError) as exc:\n ret['comment'] = 'Unable to stop container: {0}'.format(exc)\n if changes:\n ret['changes'] = changes_dict\n return ret\n if not does_exist or (does_exist and state(name, path=path) != 'running'):\n try:\n start(name, path=path)\n except (SaltInvocationError, CommandExecutionError) as exc:\n ret['comment'] = 'Unable to stop container: {0}'.format(exc)\n if changes:\n ret['changes'] = changes_dict\n return ret\n\n if remove_seed_marker:\n run(name,\n 'rm -f \\'{0}\\''.format(SEED_MARKER),\n path=path,\n chroot_fallback=False,\n python_shell=False)\n\n # set the default user/password, only the first time\n if ret.get('result', True) and password:\n gid = '/.lxc.initial_pass'\n gids = [gid,\n '/lxc.initial_pass',\n '/.lxc.{0}.initial_pass'.format(name)]\n if not any(retcode(name,\n 'test -e \"{0}\"'.format(x),\n chroot_fallback=True,\n path=path,\n ignore_retcode=True) == 0\n for x in gids):\n # think to touch the default user generated by default templates\n # which has a really unsecure passwords...\n # root is defined as a member earlier in the code\n for default_user in ['ubuntu']:\n if (\n default_user not in users and\n retcode(name,\n 'id {0}'.format(default_user),\n python_shell=False,\n path=path,\n chroot_fallback=True,\n ignore_retcode=True) == 0\n ):\n users.append(default_user)\n for user in users:\n try:\n cret = set_password(name,\n users=[user],\n path=path,\n password=password,\n encrypted=password_encrypted)\n except (SaltInvocationError, CommandExecutionError) as exc:\n msg = '{0}: Failed to set password'.format(\n user) + exc.strerror\n # only hardfail in unrecoverable situation:\n # root cannot be setted up\n if user == 'root':\n ret['comment'] = msg\n ret['result'] = False\n else:\n log.debug(msg)\n if ret.get('result', True):\n changes.append({'password': 'Password(s) updated'})\n if retcode(name,\n ('sh -c \\'touch \"{0}\"; test -e \"{0}\"\\''\n .format(gid)),\n path=path,\n chroot_fallback=True,\n ignore_retcode=True) != 0:\n ret['comment'] = 'Failed to set password marker'\n changes[-1]['password'] += '. ' + ret['comment'] + '.'\n ret['result'] = False\n\n # set dns servers if any, only the first time\n if ret.get('result', True) and dnsservers:\n # retro compatibility, test also old markers\n gid = '/.lxc.initial_dns'\n gids = [gid,\n '/lxc.initial_dns',\n '/lxc.{0}.initial_dns'.format(name)]\n if not any(retcode(name,\n 'test -e \"{0}\"'.format(x),\n chroot_fallback=True,\n path=path,\n ignore_retcode=True) == 0\n for x in gids):\n try:\n set_dns(name,\n path=path,\n dnsservers=dnsservers,\n searchdomains=searchdomains)\n except (SaltInvocationError, CommandExecutionError) as exc:\n ret['comment'] = 'Failed to set DNS: ' + exc.strerror\n ret['result'] = False\n else:\n changes.append({'dns': 'DNS updated'})\n if retcode(name,\n ('sh -c \\'touch \"{0}\"; test -e \"{0}\"\\''\n .format(gid)),\n chroot_fallback=True,\n path=path,\n ignore_retcode=True) != 0:\n ret['comment'] = 'Failed to set DNS marker'\n changes[-1]['dns'] += '. ' + ret['comment'] + '.'\n ret['result'] = False\n\n # retro compatibility, test also old markers\n if remove_seed_marker:\n run(name,\n 'rm -f \\'{0}\\''.format(SEED_MARKER),\n path=path,\n python_shell=False)\n gid = '/.lxc.initial_seed'\n gids = [gid, '/lxc.initial_seed']\n if (\n any(retcode(name,\n 'test -e {0}'.format(x),\n path=path,\n chroot_fallback=True,\n ignore_retcode=True) == 0\n for x in gids) or not ret.get('result', True)\n ):\n pass\n elif seed or seed_cmd:\n if seed:\n try:\n result = bootstrap(\n name, config=salt_config, path=path,\n approve_key=approve_key,\n pub_key=pub_key, priv_key=priv_key,\n install=install,\n force_install=force_install,\n unconditional_install=unconditional_install,\n bootstrap_delay=bootstrap_delay,\n bootstrap_url=bootstrap_url,\n bootstrap_shell=bootstrap_shell,\n bootstrap_args=bootstrap_args)\n except (SaltInvocationError, CommandExecutionError) as exc:\n ret['comment'] = 'Bootstrap failed: ' + exc.strerror\n ret['result'] = False\n else:\n if not result:\n ret['comment'] = ('Bootstrap failed, see minion log for '\n 'more information')\n ret['result'] = False\n else:\n changes.append(\n {'bootstrap': 'Container successfully bootstrapped'}\n )\n elif seed_cmd:\n try:\n result = __salt__[seed_cmd](info(name, path=path)['rootfs'],\n name,\n salt_config)\n except (SaltInvocationError, CommandExecutionError) as exc:\n ret['comment'] = ('Bootstrap via seed_cmd \\'{0}\\' failed: {1}'\n .format(seed_cmd, exc.strerror))\n ret['result'] = False\n else:\n if not result:\n ret['comment'] = ('Bootstrap via seed_cmd \\'{0}\\' failed, '\n 'see minion log for more information '\n .format(seed_cmd))\n ret['result'] = False\n else:\n changes.append(\n {'bootstrap': 'Container successfully bootstrapped '\n 'using seed_cmd \\'{0}\\''\n .format(seed_cmd)}\n )\n\n if ret.get('result', True) and not start_:\n try:\n stop(name, path=path)\n except (SaltInvocationError, CommandExecutionError) as exc:\n ret['comment'] = 'Unable to stop container: {0}'.format(exc)\n ret['result'] = False\n\n state_post = state(name, path=path)\n if state_pre != state_post:\n changes.append({'state': {'old': state_pre, 'new': state_post}})\n\n if ret.get('result', True):\n ret['comment'] = ('Container \\'{0}\\' successfully initialized'\n .format(name))\n ret['result'] = True\n if changes:\n ret['changes'] = changes_dict\n return ret", "metadata": "root.init", "header": "['module', '___EOS___']", "index": 1125 }, { "content": "def wait_started(name, path=None, timeout=300):\n '''\n Check that the system has fully inited\n\n This is actually very important for systemD based containers\n\n see https://github.com/saltstack/salt/issues/23847\n\n path\n path to the container parent\n default: /var/lib/lxc (system default)\n\n .. versionadded:: 2015.8.0\n\n CLI Example:\n\n .. code-block:: bash\n\n salt myminion lxc.wait_started ubuntu\n\n '''\n if not exists(name, path=path):\n raise CommandExecutionError(\n 'Container {0} does does exists'.format(name))\n if not state(name, path=path) == 'running':\n raise CommandExecutionError(\n 'Container {0} is not running'.format(name))\n ret = False\n if running_systemd(name, path=path):\n test_started = test_sd_started_state\n logger = log.error\n else:\n test_started = test_bare_started_state\n logger = log.debug\n now = time.time()\n expire = now + timeout\n now = time.time()\n started = test_started(name, path=path)\n while time.time() < expire and not started:\n time.sleep(0.3)\n started = test_started(name, path=path)\n if started is None:\n logger(\n 'Assuming {0} is started, although we failed to detect that'\n ' is fully started correctly'.format(name))\n ret = True\n else:\n ret = started\n return ret", "metadata": "root.wait_started", "header": "['module', '___EOS___']", "index": 3326 }, { "content": "def bootstrap(name,\n config=None,\n approve_key=True,\n install=True,\n pub_key=None,\n priv_key=None,\n bootstrap_url=None,\n force_install=False,\n unconditional_install=False,\n path=None,\n bootstrap_delay=None,\n bootstrap_args=None,\n bootstrap_shell=None):\n '''\n Install and configure salt in a container.\n\n config\n Minion configuration options. By default, the ``master`` option is set\n to the target host's master.\n\n approve_key\n Request a pre-approval of the generated minion key. Requires\n that the salt-master be configured to either auto-accept all keys or\n expect a signing request from the target host. Default: ``True``\n\n path\n path to the container parent\n default: /var/lib/lxc (system default)\n\n .. versionadded:: 2015.8.0\n\n pub_key\n Explicit public key to pressed the minion with (optional).\n This can be either a filepath or a string representing the key\n\n priv_key\n Explicit private key to pressed the minion with (optional).\n This can be either a filepath or a string representing the key\n\n bootstrap_delay\n Delay in seconds between end of container creation and bootstrapping.\n Useful when waiting for container to obtain a DHCP lease.\n\n .. versionadded:: 2015.5.0\n\n bootstrap_url\n url, content or filepath to the salt bootstrap script\n\n bootstrap_args\n salt bootstrap script arguments\n\n bootstrap_shell\n shell to execute the script into\n\n install\n Whether to attempt a full installation of salt-minion if needed.\n\n force_install\n Force installation even if salt-minion is detected,\n this is the way to run vendor bootstrap scripts even\n if a salt minion is already present in the container\n\n unconditional_install\n Run the script even if the container seems seeded\n\n CLI Examples:\n\n .. code-block:: bash\n\n salt 'minion' lxc.bootstrap container_name [config=config_data] \\\\\n [approve_key=(True|False)] [install=(True|False)]\n\n '''\n wait_started(name, path=path)\n if bootstrap_delay is not None:\n try:\n log.info('LXC {0}: bootstrap_delay: {1}'.format(\n name, bootstrap_delay))\n time.sleep(bootstrap_delay)\n except TypeError:\n # Bad input, but assume since a value was passed that\n # a delay was desired, and sleep for 5 seconds\n time.sleep(5)\n\n c_info = info(name, path=path)\n if not c_info:\n return None\n\n # default set here as we cannot set them\n # in def as it can come from a chain of procedures.\n if bootstrap_args:\n # custom bootstrap args can be totally customized, and user could\n # have inserted the placeholder for the config directory.\n # For example, some salt bootstrap script do not use at all -c\n if '{0}' not in bootstrap_args:\n bootstrap_args += ' -c {0}'\n else:\n bootstrap_args = '-c {0}'\n if not bootstrap_shell:\n bootstrap_shell = 'sh'\n\n orig_state = _ensure_running(name, path=path)\n if not orig_state:\n return orig_state\n if not force_install:\n needs_install = _needs_install(name, path=path)\n else:\n needs_install = True\n seeded = retcode(name,\n 'test -e \\'{0}\\''.format(SEED_MARKER),\n path=path,\n chroot_fallback=True,\n ignore_retcode=True) == 0\n tmp = tempfile.mkdtemp()\n if seeded and not unconditional_install:\n ret = True\n else:\n ret = False\n cfg_files = __salt__['seed.mkconfig'](\n config, tmp=tmp, id_=name, approve_key=approve_key,\n pub_key=pub_key, priv_key=priv_key)\n if needs_install or force_install or unconditional_install:\n if install:\n rstr = __salt__['test.rand_str']()\n configdir = '/var/tmp/.c_{0}'.format(rstr)\n\n cmd = 'install -m 0700 -d {0}'.format(configdir)\n if run(name, cmd, python_shell=False):\n log.error('tmpdir {0} creation failed ({1}'\n .format(configdir, cmd))\n return False\n\n bs_ = __salt__['config.gather_bootstrap_script'](\n bootstrap=bootstrap_url)\n script = '/sbin/{0}_bootstrap.sh'.format(rstr)\n copy_to(name, bs_, script, path=path)\n result = run_all(name,\n 'sh -c \"chmod +x {0}\"'.format(script),\n python_shell=True)\n\n copy_to(name, cfg_files['config'],\n os.path.join(configdir, 'minion'),\n path=path)\n copy_to(name, cfg_files['privkey'],\n os.path.join(configdir, 'minion.pem'),\n path=path)\n copy_to(name, cfg_files['pubkey'],\n os.path.join(configdir, 'minion.pub'),\n path=path)\n bootstrap_args = bootstrap_args.format(configdir)\n cmd = ('{0} {2} {1}'\n .format(bootstrap_shell,\n bootstrap_args.replace(\"'\", \"''\"),\n script))\n # log ASAP the forged bootstrap command which can be wrapped\n # out of the output in case of unexpected problem\n log.info('Running {0} in LXC container \\'{1}\\''\n .format(cmd, name))\n ret = retcode(name, cmd, output_loglevel='info',\n path=path, use_vt=True) == 0\n\n run_all(name,\n 'sh -c \\'if [ -f \"{0}\" ];then rm -f \"{0}\";fi\\''\n ''.format(script),\n ignore_retcode=True,\n python_shell=True)\n else:\n ret = False\n else:\n minion_config = salt.config.minion_config(cfg_files['config'])\n pki_dir = minion_config['pki_dir']\n copy_to(name,\n cfg_files['config'],\n '/etc/salt/minion',\n path=path)\n copy_to(name,\n cfg_files['privkey'],\n os.path.join(pki_dir, 'minion.pem'),\n path=path)\n copy_to(name,\n cfg_files['pubkey'],\n os.path.join(pki_dir, 'minion.pub'),\n path=path)\n run(name,\n 'salt-call --local service.enable salt-minion',\n path=path,\n python_shell=False)\n ret = True\n shutil.rmtree(tmp)\n if orig_state == 'stopped':\n stop(name, path=path)\n elif orig_state == 'frozen':\n freeze(name, path=path)\n # mark seeded upon successful install\n if ret:\n run(name,\n 'touch \\'{0}\\''.format(SEED_MARKER),\n path=path,\n python_shell=False)\n return ret", "metadata": "root.bootstrap", "header": "['module', '___EOS___']", "index": 3398 } ]

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[ { "content": " def test_should_have_strategies(self):\n \"\"\"Element Finder instance should contain expected strategies.\"\"\"\n self.assertTrue('android' in self.finder._strategies)\n self.assertTrue('ios' in self.finder._strategies)", "metadata": "root.ElementFinderTests.test_should_have_strategies", "header": "['class', 'ElementFinderTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 13 } ]

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[]

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[ { "content": "#!/usr/bin/env python\n\"\"\"\nEpics XRF Display App\n\"\"\"\n\nimport sys\nimport os\n\nimport time\nimport copy\nfrom functools import partial\n\nimport wx\nimport wx.lib.mixins.inspection\nimport wx.lib.scrolledpanel as scrolled\ntry:\n from wx._core import PyDeadObjectError\nexcept:\n PyDeadObjectError = Exception\n\nimport wx.lib.colourselect as csel\nimport numpy as np\nimport matplotlib\n\nHAS_PLOT = False\ntry:\n from wxmplot import PlotPanel\n HAS_PLOT = True\nexcept ImportError:\n HAS_PLOT = False\n\nHAS_DV = False\ntry:\n import wx.dataview as dv\n HAS_DV = True\nexcept:\n pass\n\nfrom wxutils import (SimpleText, EditableListBox, Font, FloatCtrl,\n pack, Popup, Button, get_icon, Check, MenuItem,\n Choice, FileOpen, FileSave, fix_filename, HLine,\n GridPanel, CEN, LEFT, RIGHT)\n\n\nimport larch\nfrom larch_plugins.wx import (PeriodicTablePanel, XRFDisplayFrame,\n FILE_WILDCARDS, CalibrationFrame)\n\nROI_WILDCARD = 'Data files (*.dat)|*.dat|ROI files (*.roi)|*.roi|All files (*.*)|*.*'\nlarch.use_plugin_path('epics')\ntry:\n from larch_plugins.epics import Epics_MultiXMAP, Epics_Xspress3\n from scandb import ScanDB\nexcept:\n pass\n\n\n\n\n\n\nif __name__ == \"__main__\":\n # e = EpicsXRFApp(prefix='QX4:', det_type='ME-4',\n # amp_type='xspress3', nmca=4)\n\n EpicsXRFApp().MainLoop()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": " def ConnectScanDB(self, **kws):\n self.scandb = ScanDB(**kws)\n # print \"Scandb \", self.scandb\n if self.scandb is not None:\n basedir = self.scandb.get_info('user_folder')\n fileroot = self.scandb.get_info('server_fileroot')\n basedir = str(basedir)\n fileroot = str(fileroot)\n if basedir.startswith(fileroot):\n basedir = basedir[len(fileroot):]\n fullpath = os.path.join(fileroot, basedir)\n fullpath = fullpath.replace('\\\\', '/').replace('//', '/')\n curdir = os.getcwd()\n try:\n os.chdir(fullpath)\n except:\n os.chdir(curdir)\n self.scandb.connect_pvs()", "metadata": "root.EpicsXRFDisplayFrame.ConnectScanDB", "header": "['class', 'EpicsXRFDisplayFrame', '(', 'XRFDisplayFrame', ')', ':', '___EOS___']", "index": 165 }, { "content": " def onCalibrateEnergy(self, event=None, **kws):\n try:\n self.win_calib.Raise()\n except:\n self.win_calib = CalibrationFrame(self, mca=self.mca,\n larch=self.larch,\n callback=self.onSetCalib)", "metadata": "root.EpicsXRFDisplayFrame.onCalibrateEnergy", "header": "['class', 'EpicsXRFDisplayFrame', '(', 'XRFDisplayFrame', ')', ':', '___EOS___']", "index": 571 } ]

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[ { "content": " def exportChildren(self, lwrite, level, namespace_='WinRegistryKeyObj:', name_='RegistryValueType', fromsubclass_=False, pretty_print=True):\n if pretty_print:\n eol_ = '\\n'\n else:\n eol_ = ''\n if self.Name is not None:\n self.Name.export(lwrite, level, 'WinRegistryKeyObj:', name_='Name', pretty_print=pretty_print)\n if self.Data is not None:\n self.Data.export(lwrite, level, 'WinRegistryKeyObj:', name_='Data', pretty_print=pretty_print)\n if self.Datatype is not None:\n self.Datatype.export(lwrite, level, 'WinRegistryKeyObj:', name_='Datatype', pretty_print=pretty_print)\n if self.Byte_Runs is not None:\n self.Byte_Runs.export(lwrite, level, 'WinRegistryKeyObj:', name_='Byte_Runs', pretty_print=pretty_print)", "metadata": "root.RegistryValueType.exportChildren", "header": "['class', 'RegistryValueType', '(', 'GeneratedsSuper', ')', ':', '___EOS___']", "index": 69 }, { "content": " def exportChildren(self, lwrite, level, namespace_='WinRegistryKeyObj:', name_='RegistryValuesType', fromsubclass_=False, pretty_print=True):\n if pretty_print:\n eol_ = '\\n'\n else:\n eol_ = ''\n for Value_ in self.Value:\n Value_.export(lwrite, level, 'WinRegistryKeyObj:', name_='Value', pretty_print=pretty_print)", "metadata": "root.RegistryValuesType.exportChildren", "header": "['class', 'RegistryValuesType', '(', 'GeneratedsSuper', ')', ':', '___EOS___']", "index": 155 }, { "content": " def exportChildren(self, lwrite, level, namespace_='WinRegistryKeyObj:', name_='RegistrySubkeysType', fromsubclass_=False, pretty_print=True):\n if pretty_print:\n eol_ = '\\n'\n else:\n eol_ = ''\n for Subkey_ in self.Subkey:\n Subkey_.export(lwrite, level, 'WinRegistryKeyObj:', name_='Subkey', pretty_print=pretty_print)", "metadata": "root.RegistrySubkeysType.exportChildren", "header": "['class', 'RegistrySubkeysType', '(', 'GeneratedsSuper', ')', ':', '___EOS___']", "index": 223 }, { "content": " def exportChildren(self, lwrite, level, namespace_='WinRegistryKeyObj:', name_='WindowsRegistryKeyObjectType', fromsubclass_=False, pretty_print=True):\n super(WindowsRegistryKeyObjectType, self).exportChildren(lwrite, level, 'WinRegistryKeyObj:', name_, True, pretty_print=pretty_print)\n if pretty_print:\n eol_ = '\\n'\n else:\n eol_ = ''\n if self.Key is not None:\n self.Key.export(lwrite, level, 'WinRegistryKeyObj:', name_='Key', pretty_print=pretty_print)\n if self.Hive is not None:\n self.Hive.export(lwrite, level, 'WinRegistryKeyObj:', name_='Hive', pretty_print=pretty_print)\n if self.Number_Values is not None:\n self.Number_Values.export(lwrite, level, 'WinRegistryKeyObj:', name_='Number_Values', pretty_print=pretty_print)\n if self.Values is not None:\n self.Values.export(lwrite, level, 'WinRegistryKeyObj:', name_='Values', pretty_print=pretty_print)\n if self.Modified_Time is not None:\n self.Modified_Time.export(lwrite, level, 'WinRegistryKeyObj:', name_='Modified_Time', pretty_print=pretty_print)\n if self.Creator_Username is not None:\n self.Creator_Username.export(lwrite, level, 'WinRegistryKeyObj:', name_='Creator_Username', pretty_print=pretty_print)\n if self.Handle_List is not None:\n self.Handle_List.export(lwrite, level, 'WinRegistryKeyObj:', name_='Handle_List', pretty_print=pretty_print)\n if self.Number_Subkeys is not None:\n self.Number_Subkeys.export(lwrite, level, 'WinRegistryKeyObj:', name_='Number_Subkeys', pretty_print=pretty_print)\n if self.Subkeys is not None:\n self.Subkeys.export(lwrite, level, 'WinRegistryKeyObj:', name_='Subkeys', pretty_print=pretty_print)\n if self.Byte_Runs is not None:\n self.Byte_Runs.export(lwrite, level, 'WinRegistryKeyObj:', name_='Byte_Runs', pretty_print=pretty_print)", "metadata": "root.WindowsRegistryKeyObjectType.exportChildren", "header": "['class', 'WindowsRegistryKeyObjectType', '(', 'cybox_common', '.', 'ObjectPropertiesType', ')', ':', '___EOS___']", "index": 482 }, { "content": "def parse(inFileName):\n doc = parsexml_(inFileName)\n rootNode = doc.getroot()\n rootTag, rootClass = get_root_tag(rootNode)\n if rootClass is None:\n rootTag = 'Windows_Registry_Key'\n rootClass = WindowsRegistryKeyObjectType\n rootObj = rootClass.factory()\n rootObj.build(rootNode)\n # Enable Python to collect the space used by the DOM.\n doc = None\n# sys.stdout.write('<?xml version=\"1.0\" ?>\\n')\n# rootObj.export(sys.stdout.write, 0, name_=rootTag,\n# namespacedef_='',\n# pretty_print=True)\n return rootObj", "metadata": "root.parse", "header": "['module', '___EOS___']", "index": 682 }, { "content": "def parseEtree(inFileName):\n doc = parsexml_(inFileName)\n rootNode = doc.getroot()\n rootTag, rootClass = get_root_tag(rootNode)\n if rootClass is None:\n rootTag = 'Windows_Registry_Key'\n rootClass = WindowsRegistryKeyObjectType\n rootObj = rootClass.factory()\n rootObj.build(rootNode)\n # Enable Python to collect the space used by the DOM.\n doc = None\n rootElement = rootObj.to_etree(None, name_=rootTag)\n content = etree_.tostring(rootElement, pretty_print=True,\n xml_declaration=True, encoding=\"utf-8\")\n sys.stdout.write(content)\n sys.stdout.write('\\n')\n return rootObj, rootElement", "metadata": "root.parseEtree", "header": "['module', '___EOS___']", "index": 699 }, { "content": "def parseString(inString):\n from mixbox.vendor.six import StringIO\n doc = parsexml_(StringIO(inString))\n rootNode = doc.getroot()\n rootTag, rootClass = get_root_tag(rootNode)\n if rootClass is None:\n rootTag = 'Windows_Registry_Key'\n rootClass = WindowsRegistryKeyObjectType\n rootObj = rootClass.factory()\n rootObj.build(rootNode)\n # Enable Python to collect the space used by the DOM.\n doc = None\n# sys.stdout.write('<?xml version=\"1.0\" ?>\\n')\n# rootObj.export(sys.stdout.write, 0, name_=\"Windows_Registry_Key\",\n# namespacedef_='')\n return rootObj", "metadata": "root.parseString", "header": "['module', '___EOS___']", "index": 717 } ]

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[ { "content": "'''\nStreamingExtensions is a plug-in to both GUI menu and command line/web service\nthat provides an alternative approach to big instance documents without building a DOM, to save\nmemory footprint. lxml iterparse is used to parse the big instance. ModelObjects are specialized by features\nfor efficiency and to avoid dependency on an underlying DOM.\n\n(Note that this module is based on a parser target, an alternate based on iterparse is under examples/plugin.)\n\n(c) Copyright 2013 Mark V Systems Limited, All rights reserved.\n\nCalls these plug-in classes:\n Streaming.BlockingPlugin(modelXbrl): returns name of plug in blocking streaming if it is being blocked, else None\n Streaming.Start(modelXbrl): notifies that streaming is starting for modelXbrl; simulated modelDocument is established\n Streaming.ValidateFacts(modelXbrl, modelFacts) modelFacts are available for streaming processing\n Streaming.Finish(modelXbrl): notifies that streaming is finished\n'''\n\nimport io, os, time, sys, re, gc\nfrom decimal import Decimal, InvalidOperation\nfrom lxml import etree\nfrom arelle import XbrlConst, XmlUtil, XmlValidate, ValidateXbrlDimensions\nfrom arelle.ModelDocument import ModelDocument, Type\nfrom arelle.ModelObjectFactory import parser\nfrom arelle.ModelObject import ModelObject\nfrom arelle.ModelInstanceObject import ModelFact\nfrom arelle.PluginManager import pluginClassMethods\nfrom arelle.Validate import Validate\nfrom arelle.HashUtil import md5hash, Md5Sum\n\n_streamingExtensionsCheck = True # check streaming if enabled except for CmdLine, then only when requested\n_streamingExtensionsValidate = False\n_streamingValidatePlugin = False\n \n\n\n\n\n\n\n \n \n \n \n\n'''\ndef streamingOptionsExtender(parser):\n parser.add_option(\"--check-streaming\", \n action=\"store_true\", \n dest=\"check_streaming\", \n help=_('Check streamability of instance document.\"'))\n'''\n\n\n\n'''\n Do not use _( ) in pluginInfo itself (it is applied later, after loading\n'''\n\n__pluginInfo__ = {\n 'name': 'Streaming Extensions Loader',\n 'version': '0.9',\n 'description': \"This plug-in loads big XBRL instances without building a DOM in memory. \"\n \"lxml iterparse parses XBRL directly into an object model without a DOM. \",\n 'license': 'Apache-2',\n 'author': 'Mark V Systems Limited',\n 'copyright': '(c) Copyright 2014 Mark V Systems Limited, All rights reserved.',\n # classes of mount points (required)\n # take out for now: 'CntlrCmdLine.Options': streamingOptionsExtender,\n 'CntlrCmdLine.Utility.Run': streamingExtensionsSetup,\n 'ModelDocument.PullLoader': streamingExtensionsLoader,\n 'ModelDocument.IsValidated': streamingExtensionsIsValidated,\n}\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class NotInstanceDocumentException(Exception):", "metadata": "root.NotInstanceDocumentException", "header": "['module', '___EOS___']", "index": 33 }, { "content": " def __init__(self):\n pass", "metadata": "root.NotInstanceDocumentException.__init__", "header": "['class', 'NotInstanceDocumentException', '(', 'Exception', ')', ':', '___EOS___']", "index": 34 }, { "content": "def precedingProcessingInstruction(elt, target):\n pi = elt.getprevious()\n while pi is not None:\n if isinstance(pi, etree._ProcessingInstruction) and pi.target == target:\n return pi\n pi = pi.getprevious()\n return None", "metadata": "root.precedingProcessingInstruction", "header": "['module', '___EOS___']", "index": 37 }, { "content": "def childProcessingInstruction(elt, target, reversed=False):\n for pi in elt.iterchildren(reversed=reversed):\n if isinstance(pi, etree._ProcessingInstruction):\n if pi.target == target:\n return pi\n else:\n break\n return None", "metadata": "root.childProcessingInstruction", "header": "['module', '___EOS___']", "index": 45 }, { "content": "def precedingComment(elt):\n c = elt.getprevious()\n comment = ''\n while c is not None:\n if isinstance(c, etree._Comment) and c.text:\n comment = c.text + '\\n' + comment\n c = c.getprevious()\n return comment or None", "metadata": "root.precedingComment", "header": "['module', '___EOS___']", "index": 54 }, { "content": "def streamingExtensionsLoader(modelXbrl, mappedUri, filepath, *args, **kwargs):\n # check if big instance and has header with an initial incomplete tree walk (just 2 elements\n if not _streamingExtensionsCheck:\n return None\n \n # track whether modelXbrl has been validated by this streaming extension\n modelXbrl._streamingExtensionValidated = False\n \n def logSyntaxErrors(parsercontext):\n for error in parsercontext.error_log:\n modelXbrl.error(\"xmlSchema:syntax\",\n _(\"%(error)s, %(fileName)s, line %(line)s, column %(column)s, %(sourceAction)s source element\"),\n modelObject=modelXbrl, fileName=os.path.basename(filepath), \n error=error.message, line=error.line, column=error.column, sourceAction=\"streaming\")\n #### note: written for iterparse of lxml prior to version 3.3, otherwise rewrite to use XmlPullParser ###\n #### note: iterparse wants a binary file, but file is text mode\n _file, = modelXbrl.fileSource.file(filepath, binary=True)\n startedAt = time.time()\n modelXbrl.profileActivity()\n ''' this seems twice as slow as iterparse\n class instInfoTarget():\n def __init__(self, element_factory=None, parser=None):\n self.newTree = True\n self.streamingAspects = None\n self.foundInstance = False\n self.creationSoftwareComment = ''\n self.currentEltTag = \"(before xbrli:xbrl)\"\n self.numRootFacts = 0\n def start(self, tag, attrib, nsmap=None):\n if self.newTree:\n if tag == \"{http://www.xbrl.org/2003/instance}xbrl\":\n self.foundInstance = True\n self.newTree = False\n else: # break \n raise NotInstanceDocumentException()\n elif not tag.startswith(\"{http://www.xbrl.org/\"):\n self.numRootFacts += 1\n if self.numRootFacts % 1000 == 0:\n modelXbrl.profileActivity(\"... streaming tree check\", minTimeToShow=20.0)\n self.currentEltTag = tag\n def end(self, tag):\n pass\n def data(self, data):\n pass\n def comment(self, text):\n if not self.foundInstance: # accumulate comments before xbrli:xbrl\n self.creationSoftwareComment += ('\\n' if self.creationSoftwareComment else '') + text\n elif not self.creationSoftwareComment:\n self.creationSoftwareComment = text # or first comment after xbrli:xbrl\n def pi(self, target, data):\n if target == \"xbrl-streamable-instance\":\n if self.currentEltTag == \"{http://www.xbrl.org/2003/instance}xbrl\":\n self.streamingAspects = dict(etree.PI(target,data).attrib.copy()) # dereference target results\n else:\n modelXbrl.error(\"streamingExtensions:headerMisplaced\",\n _(\"Header is misplaced: %(target)s, must follow xbrli:xbrl element but was found at %(element)s\"),\n modelObject=modelXbrl, target=target, element=self.currentEltTag)\n def close(self):\n if not self.creationSoftwareComment:\n self.creationSoftwareComment = None\n return True\n instInfo = instInfoTarget()\n infoParser = etree.XMLParser(recover=True, huge_tree=True, target=instInfo)\n try:\n etree.parse(_file, parser=infoParser, base_url=filepath)\n except NotInstanceDocumentException:\n pass\n '''\n foundErrors = False\n foundInstance = False\n streamingAspects = None\n creationSoftwareComment = None\n instInfoNumRootFacts = 0\n numElts = 0\n elt = None\n instInfoContext = etree.iterparse(_file, events=(\"start\",\"end\"), huge_tree=True)\n try:\n for event, elt in instInfoContext:\n if event == \"start\":\n if elt.getparent() is not None:\n if elt.getparent().tag == \"{http://www.xbrl.org/2003/instance}xbrl\":\n if not foundInstance:\n foundInstance = True\n pi = precedingProcessingInstruction(elt, \"xbrl-streamable-instance\")\n if pi is None:\n break\n else:\n streamingAspects = dict(pi.attrib.copy())\n if creationSoftwareComment is None:\n creationSoftwareComment = precedingComment(elt)\n if not elt.tag.startswith(\"{http://www.xbrl.org/\"):\n instInfoNumRootFacts += 1\n if instInfoNumRootFacts % 1000 == 0:\n modelXbrl.profileActivity(\"... streaming tree check\", minTimeToShow=20.0)\n elif not foundInstance: \n break\n elif elt.tag == \"{http://www.xbrl.org/2003/instance}xbrl\":\n creationSoftwareComment = precedingComment(elt)\n if precedingProcessingInstruction(elt, \"xbrl-streamable-instance\") is not None:\n modelXbrl.error(\"streamingExtensions:headerMisplaced\",\n _(\"Header is misplaced: %(error)s, must follow xbrli:xbrl element\"),\n modelObject=elt)\n elif event == \"end\":\n elt.clear()\n numElts += 1\n if numElts % 1000 == 0 and elt.getparent() is not None:\n while elt.getprevious() is not None and elt.getparent() is not None:\n del elt.getparent()[0]\n except etree.XMLSyntaxError as err:\n modelXbrl.error(\"xmlSchema:syntax\",\n _(\"Unrecoverable error: %(error)s\"),\n error=err)\n _file.close()\n return err\n \n _file.seek(0,io.SEEK_SET) # allow reparsing\n if not foundInstance or streamingAspects is None:\n del elt\n _file.close()\n return None\n modelXbrl.profileStat(_(\"streaming tree check\"), time.time() - startedAt)\n startedAt = time.time()\n try:\n version = Decimal(streamingAspects.get(\"version\"))\n if int(version) != 1:\n modelXbrl.error(\"streamingExtensions:unsupportedVersion\",\n _(\"Streaming version %(version)s, major version number must be 1\"),\n modelObject=elt, version=version)\n foundErrors = True\n except (InvalidOperation, OverflowError):\n modelXbrl.error(\"streamingExtensions:versionError\",\n _(\"Version %(version)s, number must be 1.n\"),\n modelObject=elt, version=streamingAspects.get(\"version\", \"(none)\"))\n foundErrors = True\n for bufAspect in (\"contextBuffer\", \"unitBuffer\", \"footnoteBuffer\"):\n try:\n bufLimit = Decimal(streamingAspects.get(bufAspect, \"INF\"))\n if bufLimit < 1 or (bufLimit.is_finite() and bufLimit % 1 != 0):\n raise InvalidOperation\n elif bufAspect == \"contextBuffer\":\n contextBufferLimit = bufLimit\n elif bufAspect == \"unitBuffer\":\n unitBufferLimit = bufLimit\n elif bufAspect == \"footnoteBuffer\":\n footnoteBufferLimit = bufLimit\n except InvalidOperation:\n modelXbrl.error(\"streamingExtensions:valueError\",\n _(\"Streaming %(attrib)s %(value)s, number must be a positive integer or INF\"),\n modelObject=elt, attrib=bufAspect, value=streamingAspects.get(bufAspect))\n foundErrors = True\n if _streamingExtensionsValidate:\n incompatibleValidations = []\n _validateDisclosureSystem = modelXbrl.modelManager.validateDisclosureSystem\n _disclosureSystem = modelXbrl.modelManager.disclosureSystem\n if _validateDisclosureSystem and _disclosureSystem.validationType == \"EFM\":\n incompatibleValidations.append(\"EFM\")\n if _validateDisclosureSystem and _disclosureSystem.validationType == \"GFM\":\n incompatibleValidations.append(\"GFM\")\n if _validateDisclosureSystem and _disclosureSystem.validationType == \"HMRC\":\n incompatibleValidations.append(\"HMRC\")\n if modelXbrl.modelManager.validateCalcLB:\n incompatibleValidations.append(\"calculation LB\")\n if incompatibleValidations:\n modelXbrl.error(\"streamingExtensions:incompatibleValidation\",\n _(\"Streaming instance validation does not support %(incompatibleValidations)s validation\"),\n modelObject=modelXbrl, incompatibleValidations=', '.join(incompatibleValidations))\n foundErrors = True\n if instInfoContext.error_log:\n foundErrors = True\n logSyntaxErrors(instInfoContext)\n del instInfoContext # dereference\n\n for pluginMethod in pluginClassMethods(\"Streaming.BlockStreaming\"):\n _blockingPluginName = pluginMethod(modelXbrl)\n if _blockingPluginName: # name of blocking plugin is returned\n modelXbrl.error(\"streamingExtensions:incompatiblePlugIn\",\n _(\"Streaming instance not supported by plugin %(blockingPlugin)s\"),\n modelObject=modelXbrl, blockingPlugin=_blockingPluginName)\n foundErrors = True\n \n if foundErrors:\n _file.close()\n return None\n\n _encoding = XmlUtil.encoding(_file.read(512))\n _file.seek(0,io.SEEK_SET) # allow reparsing\n\n if _streamingExtensionsValidate:\n validator = Validate(modelXbrl)\n instValidator = validator.instValidator\n\n contextBuffer = []\n contextsToDrop = []\n unitBuffer = []\n unitsToDrop = []\n footnoteBuffer = []\n footnoteLinksToDrop = []\n \n _streamingFactsPlugin = any(True for pluginMethod in pluginClassMethods(\"Streaming.Facts\"))\n _streamingValidateFactsPlugin = (_streamingExtensionsValidate and \n any(True for pluginMethod in pluginClassMethods(\"Streaming.ValidateFacts\")))\n\n ''' this is very much slower than iterparse\n class modelLoaderTarget():\n def __init__(self, element_factory=None, parser=None):\n self.newTree = True\n self.currentMdlObj = None\n self.beforeInstanceStream = True\n self.beforeStartStreamingPlugin = True\n self.numRootFacts = 1\n modelXbrl.makeelementParentModelObject = None\n modelXbrl.isStreamingMode = True\n self.factsCheckVersion = None\n self.factsCheckMd5s = Md5Sum()\n def start(self, tag, attrib, nsmap=None):\n modelXbrl.makeelementParentModelObject = self.currentMdlObj # pass parent to makeelement for ModelObjectFactory\n mdlObj = _parser.makeelement(tag, attrib=attrib, nsmap=nsmap)\n mdlObj.sourceline = 1\n if self.newTree:\n self.newTree = False\n self.currentMdlObj = mdlObj\n modelDocument = ModelDocument(modelXbrl, Type.INSTANCE, mappedUri, filepath, mdlObj.getroottree())\n modelXbrl.modelDocument = modelDocument # needed for incremental validation\n mdlObj.init(modelDocument)\n modelDocument.parser = _parser # needed for XmlUtil addChild's makeelement \n modelDocument.parserLookupName = _parserLookupName\n modelDocument.parserLookupClass = _parserLookupClass\n modelDocument.xmlRootElement = mdlObj\n modelDocument.schemaLocationElements.add(mdlObj)\n modelDocument.documentEncoding = _encoding\n modelDocument._creationSoftwareComment = creationSoftwareComment\n modelXbrl.info(\"streamingExtensions:streaming\",\n _(\"Stream processing this instance.\"),\n modelObject = modelDocument)\n else:\n self.currentMdlObj.append(mdlObj)\n self.currentMdlObj = mdlObj\n mdlObj._init()\n ns = mdlObj.namespaceURI\n ln = mdlObj.localName\n if (self.beforeInstanceStream and (\n (ns == XbrlConst.link and ln not in (\"schemaRef\", \"linkbaseRef\")) or\n (ns == XbrlConst.xbrli and ln in (\"context\", \"unit\")) or\n (ns not in (XbrlConst.link, XbrlConst.xbrli)))):\n self.beforeInstanceStream = False\n if _streamingExtensionsValidate:\n instValidator.validate(modelXbrl, modelXbrl.modelManager.formulaOptions.typedParameters())\n else: # need default dimensions\n ValidateXbrlDimensions.loadDimensionDefaults(modelXbrl)\n elif not self.beforeInstanceStream and self.beforeStartStreamingPlugin:\n for pluginMethod in pluginClassMethods(\"Streaming.Start\"):\n pluginMethod(modelXbrl)\n self.beforeStartStreamingPlugin = False\n return mdlObj\n def end(self, tag):\n modelDocument = modelXbrl.modelDocument\n mdlObj = self.currentMdlObj\n parentMdlObj = mdlObj.getparent()\n self.currentMdlObj = parentMdlObj\n ns = mdlObj.namespaceURI\n ln = mdlObj.localName\n if ns == XbrlConst.xbrli:\n if ln == \"context\":\n if mdlObj.get(\"sticky\"):\n del mdlObj.attrib[\"sticky\"]\n XmlValidate.validate(modelXbrl, mdlObj)\n modelDocument.contextDiscover(mdlObj)\n else:\n if _streamingExtensionsValidate and len(contextBuffer) >= contextBufferLimit:\n # drop before adding as dropped may have same id as added\n cntx = contextBuffer.pop(0)\n if _streamingValidateFactsPlugin:\n contextsToDrop.append(cntx)\n else:\n dropContext(modelXbrl, cntx)\n del parentMdlObj[parentMdlObj.index(cntx)]\n cntx = None\n #>>XmlValidate.validate(modelXbrl, mdlObj)\n #>>modelDocument.contextDiscover(mdlObj)\n if contextBufferLimit.is_finite():\n contextBuffer.append(mdlObj)\n if _streamingExtensionsValidate:\n contextsToCheck = (mdlObj,)\n instValidator.checkContexts(contextsToCheck)\n if modelXbrl.hasXDT:\n instValidator.checkContextsDimensions(contextsToCheck)\n del contextsToCheck # dereference\n elif ln == \"unit\":\n if _streamingExtensionsValidate and len(unitBuffer) >= unitBufferLimit:\n # drop before adding as dropped may have same id as added\n unit = unitBuffer.pop(0)\n if _streamingValidateFactsPlugin:\n unitsToDrop.append(unit)\n else:\n dropUnit(modelXbrl, unit)\n del parentMdlObj[parentMdlObj.index(unit)]\n unit = None \n #>>XmlValidate.validate(modelXbrl, mdlObj)\n #>>modelDocument.unitDiscover(mdlObj)\n if unitBufferLimit.is_finite():\n unitBuffer.append(mdlObj)\n if _streamingExtensionsValidate:\n instValidator.checkUnits( (mdlObj,) )\n elif ln == \"xbrl\": # end of document\n # check remaining batched facts if any\n if _streamingValidateFactsPlugin:\n # plugin attempts to process batch of all root facts not yet processed (not just current one)\n # finish any final batch of facts\n if len(modelXbrl.facts) > 0:\n factsToCheck = modelXbrl.facts.copy()\n factsHaveBeenProcessed = True\n # can block facts deletion if required data not yet available, such as numeric unit for DpmDB\n for pluginMethod in pluginClassMethods(\"Streaming.ValidateFacts\"):\n if not pluginMethod(modelXbrl, factsToCheck):\n factsHaveBeenProcessed = False\n if factsHaveBeenProcessed:\n for fact in factsToCheck:\n dropFact(modelXbrl, fact, modelXbrl.facts)\n del parentMdlObj[parentMdlObj.index(fact)]\n for cntx in contextsToDrop:\n dropContext(modelXbrl, cntx)\n del parentMdlObj[parentMdlObj.index(cntx)]\n for unit in unitsToDrop:\n dropUnit(modelXbrl, unit)\n del parentMdlObj[parentMdlObj.index(unit)]\n for footnoteLink in footnoteLinksToDrop:\n dropFootnoteLink(modelXbrl, footnoteLink)\n del parentMdlObj[parentMdlObj.index(footnoteLink)]\n fact = cntx = unit = footnoteLink = None\n del contextsToDrop[:]\n del unitsToDrop[:]\n del footnoteLinksToDrop[:]\n del factsToCheck\n # check remaining footnote refs\n for footnoteLink in footnoteBuffer:\n checkFootnoteHrefs(modelXbrl, footnoteLink)\n for pluginMethod in pluginClassMethods(\"Streaming.Finish\"):\n pluginMethod(modelXbrl)\n elif ns == XbrlConst.link:\n if ln == \"footnoteLink\":\n XmlValidate.validate(modelXbrl, mdlObj)\n footnoteLinks = (mdlObj,)\n modelDocument.linkbaseDiscover(footnoteLinks, inInstance=True)\n if footnoteBufferLimit.is_finite():\n footnoteBuffer.append(mdlObj)\n if _streamingExtensionsValidate:\n instValidator.checkLinks(footnoteLinks)\n if len(footnoteBuffer) > footnoteBufferLimit:\n # check that hrefObjects for locators were all satisfied\n # drop before addition as dropped may have same id as added\n footnoteLink = footnoteBuffer.pop(0)\n checkFootnoteHrefs(modelXbrl, footnoteLink)\n if _streamingValidateFactsPlugin:\n footnoteLinksToDrop.append(footnoteLink)\n else:\n dropFootnoteLink(modelXbrl, footnoteLink)\n del parentMdlObj[parentMdlObj.index(footnoteLink)]\n footnoteLink = None\n footnoteLinks = None\n elif ln in (\"schemaRef\", \"linkbaseRef\"):\n modelDocument.discoverHref(mdlObj)\n elif not modelXbrl.skipDTS:\n if ln in (\"roleRef\", \"arcroleRef\"):\n modelDocument.linkbaseDiscover((mdlObj,), inInstance=True)\n elif parentMdlObj.qname == XbrlConst.qnXbrliXbrl:\n self.numRootFacts += 1\n #>>XmlValidate.validate(modelXbrl, mdlObj)\n #>>modelDocument.factDiscover(mdlObj, modelXbrl.facts)\n if self.factsCheckVersion:\n self.factCheckFact(mdlObj)\n if _streamingExtensionsValidate or _streamingValidateFactsPlugin:\n factsToCheck = (mdlObj,) # validate current fact by itself\n if _streamingExtensionsValidate:\n instValidator.checkFacts(factsToCheck)\n if modelXbrl.hasXDT:\n instValidator.checkFactsDimensions(factsToCheck)\n if _streamingValidateFactsPlugin:\n # plugin attempts to process batch of all root facts not yet processed (not just current one)\n # use batches of 1000 facts\n if len(modelXbrl.facts) > 1000:\n factsToCheck = modelXbrl.facts.copy()\n factsHaveBeenProcessed = True\n # can block facts deletion if required data not yet available, such as numeric unit for DpmDB\n for pluginMethod in pluginClassMethods(\"Streaming.ValidateFacts\"):\n if not pluginMethod(modelXbrl, factsToCheck):\n factsHaveBeenProcessed = False\n if factsHaveBeenProcessed:\n for fact in factsToCheck:\n dropFact(modelXbrl, fact, modelXbrl.facts)\n del parentMdlObj[parentMdlObj.index(fact)]\n for cntx in contextsToDrop:\n dropContext(modelXbrl, cntx)\n del parentMdlObj[parentMdlObj.index(cntx)]\n for unit in unitsToDrop:\n dropUnit(modelXbrl, unit)\n del parentMdlObj[parentMdlObj.index(unit)]\n for footnoteLink in footnoteLinksToDrop:\n dropFootnoteLink(modelXbrl, footnoteLink)\n del parentMdlObj[parentMdlObj.index(footnoteLink)]\n fact = cntx = unit = footnoteLink = None\n del contextsToDrop[:]\n del unitsToDrop[:]\n del footnoteLinksToDrop[:]\n del factsToCheck # dereference fact or batch of facts\n else:\n dropFact(modelXbrl, mdlObj, modelXbrl.facts) # single fact has been processed\n del parentMdlObj[parentMdlObj.index(mdlObj)]\n if self.numRootFacts % 1000 == 0:\n pass\n #modelXbrl.profileActivity(\"... streaming fact {0} of {1} {2:.2f}%\".format(self.numRootFacts, instInfoNumRootFacts, \n # 100.0 * self.numRootFacts / instInfoNumRootFacts), \n # minTimeToShow=20.0)\n gc.collect()\n sys.stdout.write (\"\\rAt fact {} of {} mem {}\".format(self.numRootFacts, instInfoNumRootFacts, modelXbrl.modelManager.cntlr.memoryUsed))\n return mdlObj\n def data(self, data):\n self.currentMdlObj.text = data\n def comment(self, text):\n pass\n def pi(self, target, data):\n if target == \"xbrl-facts-check\":\n _match = re.search(\"([\\\\w-]+)=[\\\"']([^\\\"']+)[\\\"']\", data)\n if _match:\n _matchGroups = _match.groups()\n if len(_matchGroups) == 2:\n if _matchGroups[0] == \"version\":\n self.factsCheckVersion = _matchGroups[1]\n elif _matchGroups[0] == \"sum-of-fact-md5s\":\n try:\n expectedMd5 = Md5Sum(_matchGroups[1])\n if self.factsCheckMd5s != expectedMd5:\n modelXbrl.warning(\"streamingExtensions:xbrlFactsCheckWarning\",\n _(\"XBRL facts sum of md5s expected %(expectedMd5)s not matched to actual sum %(actualMd5Sum)s\"),\n modelObject=modelXbrl, expectedMd5=expectedMd5, actualMd5Sum=self.factsCheckMd5s)\n else:\n modelXbrl.info(\"info\",\n _(\"Successful XBRL facts sum of md5s.\"),\n modelObject=modelXbrl)\n except ValueError:\n modelXbrl.error(\"streamingExtensions:xbrlFactsCheckError\",\n _(\"Invalid sum-of-md5s %(sumOfMd5)s\"),\n modelObject=modelXbrl, sumOfMd5=_matchGroups[1])\n def close(self):\n del modelXbrl.makeelementParentModelObject\n return None\n \n def factCheckFact(self, fact):\n self.factsCheckMd5s += fact.md5sum\n for _tupleFact in fact.modelTupleFacts:\n self.factCheckFact(_tupleFact)\n \n _parser, _parserLookupName, _parserLookupClass = parser(modelXbrl, filepath, target=modelLoaderTarget())\n etree.parse(_file, parser=_parser, base_url=filepath)\n logSyntaxErrors(_parser)\n '''\n # replace modelLoaderTarget with iterparse (as it now supports CustomElementClassLookup)\n streamingParserContext = etree.iterparse(_file, events=(\"start\",\"end\"), huge_tree=True)\n from arelle.ModelObjectFactory import setParserElementClassLookup\n modelXbrl.isStreamingMode = True # must be set before setting element class lookup\n (_parser, _parserLookupName, _parserLookupClass) = setParserElementClassLookup(streamingParserContext, modelXbrl)\n foundInstance = False\n beforeInstanceStream = beforeStartStreamingPlugin = True\n numRootFacts = 0\n factsCheckVersion = None\n def factCheckFact(fact):\n modelDocument._factsCheckMd5s += fact.md5sum\n for _tupleFact in fact.modelTupleFacts:\n factCheckFact(_tupleFact)\n for event, mdlObj in streamingParserContext:\n if event == \"start\":\n if mdlObj.tag == \"{http://www.xbrl.org/2003/instance}xbrl\":\n modelDocument = ModelDocument(modelXbrl, Type.INSTANCE, mappedUri, filepath, mdlObj.getroottree())\n modelXbrl.modelDocument = modelDocument # needed for incremental validation\n mdlObj.init(modelDocument)\n modelDocument.parser = _parser # needed for XmlUtil addChild's makeelement \n modelDocument.parserLookupName = _parserLookupName\n modelDocument.parserLookupClass = _parserLookupClass\n modelDocument.xmlRootElement = mdlObj\n modelDocument.schemaLocationElements.add(mdlObj)\n modelDocument.documentEncoding = _encoding\n modelDocument._creationSoftwareComment = precedingComment(mdlObj)\n modelDocument._factsCheckMd5s = Md5Sum()\n modelXbrl.info(\"streamingExtensions:streaming\",\n _(\"Stream processing this instance.\"),\n modelObject = modelDocument)\n elif mdlObj.getparent() is not None:\n mdlObj._init() # requires discovery as part of start elements\n if mdlObj.getparent().tag == \"{http://www.xbrl.org/2003/instance}xbrl\":\n if not foundInstance:\n foundInstance = True\n pi = precedingProcessingInstruction(mdlObj, \"xbrl-facts-check\")\n if pi is not None:\n factsCheckVersion = pi.attrib.get(\"version\", None)\n elif not foundInstance: \n break\n ns = mdlObj.qname.namespaceURI\n ln = mdlObj.qname.localName\n if beforeInstanceStream:\n if ((ns == XbrlConst.link and ln not in (\"schemaRef\", \"linkbaseRef\")) or\n (ns == XbrlConst.xbrli and ln in (\"context\", \"unit\")) or\n (ns not in (XbrlConst.link, XbrlConst.xbrli))):\n beforeInstanceStream = False\n if _streamingExtensionsValidate:\n instValidator.validate(modelXbrl, modelXbrl.modelManager.formulaOptions.typedParameters())\n else: # need default dimensions\n ValidateXbrlDimensions.loadDimensionDefaults(modelXbrl)\n elif not beforeInstanceStream and beforeStartStreamingPlugin:\n for pluginMethod in pluginClassMethods(\"Streaming.Start\"):\n pluginMethod(modelXbrl)\n beforeStartStreamingPlugin = False\n elif event == \"end\":\n parentMdlObj = mdlObj.getparent()\n ns = mdlObj.namespaceURI\n ln = mdlObj.localName\n if ns == XbrlConst.xbrli:\n if ln == \"context\":\n if mdlObj.get(\"sticky\"):\n del mdlObj.attrib[\"sticky\"]\n XmlValidate.validate(modelXbrl, mdlObj)\n modelDocument.contextDiscover(mdlObj)\n else:\n if len(contextBuffer) >= contextBufferLimit:\n # drop before adding as dropped may have same id as added\n cntx = contextBuffer.pop(0)\n if _streamingFactsPlugin or _streamingValidateFactsPlugin:\n contextsToDrop.append(cntx)\n else:\n dropContext(modelXbrl, cntx)\n #>>del parentMdlObj[parentMdlObj.index(cntx)]\n cntx = None\n XmlValidate.validate(modelXbrl, mdlObj)\n modelDocument.contextDiscover(mdlObj)\n if contextBufferLimit.is_finite():\n contextBuffer.append(mdlObj)\n if _streamingExtensionsValidate:\n contextsToCheck = (mdlObj,)\n instValidator.checkContexts(contextsToCheck)\n if modelXbrl.hasXDT:\n instValidator.checkContextsDimensions(contextsToCheck)\n del contextsToCheck # dereference\n elif ln == \"unit\":\n if len(unitBuffer) >= unitBufferLimit:\n # drop before additing as dropped may have same id as added\n unit = unitBuffer.pop(0)\n if _streamingFactsPlugin or _streamingValidateFactsPlugin:\n unitsToDrop.append(unit)\n else:\n dropUnit(modelXbrl, unit)\n #>>del parentMdlObj[parentMdlObj.index(unit)]\n unit = None \n XmlValidate.validate(modelXbrl, mdlObj)\n modelDocument.unitDiscover(mdlObj)\n if unitBufferLimit.is_finite():\n unitBuffer.append(mdlObj)\n if _streamingExtensionsValidate:\n instValidator.checkUnits( (mdlObj,) )\n elif ln == \"xbrl\": # end of document\n # check remaining batched facts if any\n if _streamingFactsPlugin or _streamingValidateFactsPlugin:\n # plugin attempts to process batch of all root facts not yet processed (not just current one)\n # finish any final batch of facts\n if len(modelXbrl.facts) > 0:\n factsToCheck = modelXbrl.facts.copy()\n # can block facts deletion if required data not yet available, such as numeric unit for DpmDB\n if _streamingValidateFactsPlugin:\n for pluginMethod in pluginClassMethods(\"Streaming.ValidateFacts\"):\n pluginMethod(instValidator, factsToCheck)\n if _streamingFactsPlugin:\n for pluginMethod in pluginClassMethods(\"Streaming.Facts\"):\n pluginMethod(modelXbrl, factsToCheck)\n for fact in factsToCheck:\n dropFact(modelXbrl, fact, modelXbrl.facts)\n #>>del parentMdlObj[parentMdlObj.index(fact)]\n for cntx in contextsToDrop:\n dropContext(modelXbrl, cntx)\n #>>del parentMdlObj[parentMdlObj.index(cntx)]\n for unit in unitsToDrop:\n dropUnit(modelXbrl, unit)\n #>>del parentMdlObj[parentMdlObj.index(unit)]\n for footnoteLink in footnoteLinksToDrop:\n dropFootnoteLink(modelXbrl, footnoteLink)\n #>>del parentMdlObj[parentMdlObj.index(footnoteLink)]\n fact = cntx = unit = footnoteLink = None\n del contextsToDrop[:]\n del unitsToDrop[:]\n del footnoteLinksToDrop[:]\n del factsToCheck\n # check remaining footnote refs\n for footnoteLink in footnoteBuffer:\n checkFootnoteHrefs(modelXbrl, footnoteLink)\n pi = childProcessingInstruction(mdlObj, \"xbrl-facts-check\", reversed=True)\n if pi is not None: # attrib is in .text, not attrib, no idea why!!!\n _match = re.search(\"([\\\\w-]+)=[\\\"']([^\\\"']+)[\\\"']\", pi.text)\n if _match:\n _matchGroups = _match.groups()\n if len(_matchGroups) == 2:\n if _matchGroups[0] == \"sum-of-fact-md5s\":\n try:\n expectedMd5 = Md5Sum(_matchGroups[1])\n if modelDocument._factsCheckMd5s != expectedMd5:\n modelXbrl.warning(\"streamingExtensions:xbrlFactsCheckWarning\",\n _(\"XBRL facts sum of md5s expected %(expectedMd5)s not matched to actual sum %(actualMd5Sum)s\"),\n modelObject=modelXbrl, expectedMd5=expectedMd5, actualMd5Sum=modelDocument._factsCheckMd5s)\n else:\n modelXbrl.info(\"info\",\n _(\"Successful XBRL facts sum of md5s.\"),\n modelObject=modelXbrl)\n except ValueError:\n modelXbrl.error(\"streamingExtensions:xbrlFactsCheckError\",\n _(\"Invalid sum-of-md5s %(sumOfMd5)s\"),\n modelObject=modelXbrl, sumOfMd5=_matchGroups[1])\n if _streamingValidateFactsPlugin:\n for pluginMethod in pluginClassMethods(\"Streaming.ValidateFinish\"):\n pluginMethod(instValidator)\n if _streamingFactsPlugin:\n for pluginMethod in pluginClassMethods(\"Streaming.Finish\"):\n pluginMethod(modelXbrl)\n elif ns == XbrlConst.link:\n if ln in (\"schemaRef\", \"linkbaseRef\"):\n modelDocument.discoverHref(mdlObj, urlRewritePluginClass=\"ModelDocument.InstanceSchemaRefRewriter\")\n elif ln in (\"roleRef\", \"arcroleRef\"):\n modelDocument.linkbaseDiscover((mdlObj,), inInstance=True)\n elif ln == \"footnoteLink\":\n XmlValidate.validate(modelXbrl, mdlObj)\n footnoteLinks = (mdlObj,)\n modelDocument.linkbaseDiscover(footnoteLinks, inInstance=True)\n if footnoteBufferLimit.is_finite():\n footnoteBuffer.append(mdlObj)\n if _streamingExtensionsValidate:\n instValidator.checkLinks(footnoteLinks)\n if len(footnoteBuffer) > footnoteBufferLimit:\n # check that hrefObjects for locators were all satisfied\n # drop before addition as dropped may have same id as added\n footnoteLink = footnoteBuffer.pop(0)\n checkFootnoteHrefs(modelXbrl, footnoteLink)\n if _streamingValidateFactsPlugin:\n footnoteLinksToDrop.append(footnoteLink)\n else:\n dropFootnoteLink(modelXbrl, footnoteLink)\n #>>del parentMdlObj[parentMdlObj.index(footnoteLink)]\n footnoteLink = None\n footnoteLinks = None\n elif parentMdlObj.qname == XbrlConst.qnXbrliXbrl and isinstance(mdlObj, ModelFact):\n numRootFacts += 1\n XmlValidate.validate(modelXbrl, mdlObj)\n modelDocument.factDiscover(mdlObj, modelXbrl.facts)\n if factsCheckVersion:\n factCheckFact(mdlObj)\n if _streamingExtensionsValidate or _streamingFactsPlugin or _streamingValidateFactsPlugin:\n factsToCheck = (mdlObj,) # validate current fact by itself\n if _streamingExtensionsValidate:\n instValidator.checkFacts(factsToCheck)\n if modelXbrl.hasXDT:\n instValidator.checkFactsDimensions(factsToCheck)\n if _streamingFactsPlugin or _streamingValidateFactsPlugin:\n # plugin attempts to process batch of all root facts not yet processed (not just current one)\n # use batches of 1000 facts\n if len(modelXbrl.facts) > 1000:\n factsToCheck = modelXbrl.facts.copy()\n # can block facts deletion if required data not yet available, such as numeric unit for DpmDB\n if _streamingValidateFactsPlugin:\n for pluginMethod in pluginClassMethods(\"Streaming.ValidateFacts\"):\n pluginMethod(instValidator, factsToCheck)\n if _streamingFactsPlugin:\n for pluginMethod in pluginClassMethods(\"Streaming.Facts\"):\n pluginMethod(modelXbrl, factsToCheck)\n for fact in factsToCheck:\n dropFact(modelXbrl, fact, modelXbrl.facts)\n #>>del parentMdlObj[parentMdlObj.index(fact)]\n for cntx in contextsToDrop:\n dropContext(modelXbrl, cntx)\n #>>del parentMdlObj[parentMdlObj.index(cntx)]\n for unit in unitsToDrop:\n dropUnit(modelXbrl, unit)\n #>>del parentMdlObj[parentMdlObj.index(unit)]\n for footnoteLink in footnoteLinksToDrop:\n dropFootnoteLink(modelXbrl, footnoteLink)\n #>>del parentMdlObj[parentMdlObj.index(footnoteLink)]\n fact = cntx = unit = footnoteLink = None\n del contextsToDrop[:]\n del unitsToDrop[:]\n del footnoteLinksToDrop[:]\n del factsToCheck # dereference fact or batch of facts\n else:\n dropFact(modelXbrl, mdlObj, modelXbrl.facts) # single fact has been processed\n #>>del parentMdlObj[parentMdlObj.index(mdlObj)]\n if numRootFacts % 1000 == 0:\n pass\n #modelXbrl.profileActivity(\"... streaming fact {0} of {1} {2:.2f}%\".format(self.numRootFacts, instInfoNumRootFacts, \n # 100.0 * self.numRootFacts / instInfoNumRootFacts), \n # minTimeToShow=20.0)\n #gc.collect()\n #sys.stdout.write (\"\\rAt fact {} of {} mem {}\".format(numRootFacts, instInfoNumRootFacts, modelXbrl.modelManager.cntlr.memoryUsed))\n if mdlObj is not None:\n mdlObj.clear()\n del _parser, _parserLookupName, _parserLookupClass \n \n if _streamingExtensionsValidate and validator is not None:\n _file.close()\n del instValidator\n validator.close()\n # track that modelXbrl has been validated by this streaming extension\n modelXbrl._streamingExtensionValidated = True\n \n modelXbrl.profileStat(_(\"streaming complete\"), time.time() - startedAt)\n return modelXbrl.modelDocument", "metadata": "root.streamingExtensionsLoader", "header": "['module', '___EOS___']", "index": 63 }, { "content": "def checkFootnoteHrefs(modelXbrl, footnoteLink):\n for locElt in footnoteLink.iterchildren(tag=\"{http://www.xbrl.org/2003/linkbase}loc\"):\n for hrefElt, _doc, _id in footnoteLink.modelDocument.hrefObjects:\n if locElt == hrefElt and id not in footnoteLink.modelDocument.idObjects:\n modelXbrl.error(\"streamingExtensions:footnoteId\",\n _(\"Footnote id %(id)s not matched to fact in buffered region\"),\n modelObject=footnoteLink, id=id)", "metadata": "root.checkFootnoteHrefs", "header": "['module', '___EOS___']", "index": 770 }, { "content": "def dropContext(modelXbrl, cntx):\n del modelXbrl.contexts[cntx.id]\n dropObject(modelXbrl, cntx)", "metadata": "root.dropContext", "header": "['module', '___EOS___']", "index": 778 }, { "content": "def dropUnit(modelXbrl, unit):\n del modelXbrl.units[unit.id]\n dropObject(modelXbrl, unit)", "metadata": "root.dropUnit", "header": "['module', '___EOS___']", "index": 782 }, { "content": "def dropFootnoteLink(modelXbrl, footnoteLink):\n for baseSet in modelXbrl.baseSets.values():\n if footnoteLink in baseSet:\n baseSet.remove(footnoteLink)\n dropObject(modelXbrl, footnoteLink)", "metadata": "root.dropFootnoteLink", "header": "['module', '___EOS___']", "index": 786 }, { "content": "def dropFact(modelXbrl, fact, facts):\n while fact.modelTupleFacts:\n dropFact(modelXbrl, fact.modelTupleFacts[0], fact.modelTupleFacts)\n modelXbrl.factsInInstance.discard(fact)\n facts.remove(fact)\n modelXbrl.modelObjects[fact.objectIndex] = None # objects found by index, can't remove position from list\n if fact.id:\n fact.modelDocument.idObjects.pop(fact.id, None)\n fact.clear()", "metadata": "root.dropFact", "header": "['module', '___EOS___']", "index": 792 }, { "content": "def dropObject(modelXbrl, mdlObj):\n for childObj in mdlObj.iterchildren():\n dropObject(modelXbrl, childObj)\n if mdlObj.qname == XbrlConst.qnLinkLoc:\n hrefs = mdlObj.modelDocument.hrefObjects\n removedHrefs = [i for i, hrefObj in enumerate(hrefs) if mdlObj == hrefObj[0]]\n for i in removedHrefs:\n del hrefs[i]\n modelXbrl.modelObjects[mdlObj.objectIndex] = None # objects found by index, can't remove position from list\n if mdlObj.id:\n mdlObj.modelDocument.idObjects.pop(mdlObj.id, None)\n mdlObj.clear()", "metadata": "root.dropObject", "header": "['module', '___EOS___']", "index": 802 }, { "content": "def streamingExtensionsSetup(cntlr, options, *args, **kwargs):\n global _streamingExtensionsCheck, _streamingExtensionsValidate\n # streaming only checked in CmdLine/web server mode if requested\n # _streamingExtensionsCheck = getattr(options, 'check_streaming', False)\n _streamingExtensionsValidate = options.validate", "metadata": "root.streamingExtensionsSetup", "header": "['module', '___EOS___']", "index": 823 }, { "content": "def streamingExtensionsIsValidated(modelXbrl, *args, **kwargs):\n return getattr(modelXbrl, \"_streamingExtensionValidated\", False)", "metadata": "root.streamingExtensionsIsValidated", "header": "['module', '___EOS___']", "index": 829 } ]

[ { "span": "import io, os, time, sys, re, gc", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 32 }, { "span": "from arelle.ModelObjectFactory import parser", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 44 }, { "span": "from arelle.ModelObject import ModelObject", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 42 }, { "span": "from arelle.HashUtil import md5hash, Md5Sum", "start_line": 27, "start_column": 0, "end_line": 27, "end_column": 43 } ]

[]

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[ { "content": "\"\"\"\nMaya-related functions, which are useful to both `api` and `core`, including `mayaInit` which ensures\nthat maya is initialized in standalone mode.\n\"\"\"\n\nfrom . import plogging\nimport pymel.util.picklezip as picklezip\nimport glob\nimport pymel.versions as versions\nimport os\nimport inspect\nimport maya\nimport cPickle as pickle\nimport maya.OpenMaya as om\nimport sys\n\nfrom pymel.util.common import subpackages\nfrom pymel.versions import shortName\nfrom collections import namedtuple\nfrom pymel.versions import installName\nfrom pymel.util.shell import shellOutput\nfrom pymel.mayautils import getUserPrefsDir\nfrom pymel.util.shell import refreshEnviron\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n_finalizeCalled = True\n\npymel_options = {}\n\n_logger = None\n\nisInitializing = False\n\nwith_statement = None\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class PymelCache(object):\n \n \n \n \n \n \n __dict__ = None\n \n __weakref__ = None\n \n COMPRESSED = True\n \n \n DESC = ''\n \n \n NAME = ''\n \n \n USE_VERSION = True", "metadata": "root.PymelCache", "header": "['module', '___EOS___']", "index": 24 }, { "content": " def path(self):\n pass", "metadata": "root.PymelCache.path", "header": "['class', 'PymelCache', '(', 'object', ')', ':', '___EOS___']", "index": 25 }, { "content": " def read(self):\n pass", "metadata": "root.PymelCache.read", "header": "['class', 'PymelCache', '(', 'object', ')', ':', '___EOS___']", "index": 29 }, { "content": " def write(self, data):\n pass", "metadata": "root.PymelCache.write", "header": "['class', 'PymelCache', '(', 'object', ')', ':', '___EOS___']", "index": 33 }, { "content": "class SubItemCache(PymelCache):\n \"\"\"\n Used to store various maya information\n \n ie, api / cmd data parsed from docs\n \n To implement, create a subclass, which overrides at least the NAME, DESC,\n and _CACHE_NAMES attributes, and implements the rebuild method.\n \n Then to access data, you should initialize an instance, then call build;\n build will load the data from the cache file if possible, or call rebuild\n to build the data from scratch if not. If the data had to be rebuilt,\n a new file cache will be saved.\n \n The data may then be accessed through attributes on the instance, with\n the names given in _CACHE_NAMES.\n \n >>> class NodeCache(SubItemCache):\n ... NAME = 'mayaNodes'\n ... DESC = 'the maya nodes cache'\n ... COMPRESSED = False\n ... _CACHE_NAMES = ['nodeTypes']\n ... def rebuild(self):\n ... import maya.cmds\n ... self.nodeTypes = maya.cmds.allNodeTypes(includeAbstract=True)\n >>> cacheInst = NodeCache()\n >>> cacheInst.build()\n >>> 'polyCube' in cacheInst.nodeTypes\n True\n \"\"\"\n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n \n DEFAULT_TYPE = None\n \n \n ITEM_TYPES = {}\n \n \n STORAGE_TYPES = {}", "metadata": "root.SubItemCache", "header": "['module', '___EOS___']", "index": 53 }, { "content": " def __init__(self):\n pass", "metadata": "root.SubItemCache.__init__", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 86 }, { "content": " def build(self):\n \"\"\"\n Used to rebuild cache, either by loading from a cache file, or rebuilding from scratch.\n \"\"\"\n \n pass", "metadata": "root.SubItemCache.build", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 90 }, { "content": " def cacheNames(self):\n pass", "metadata": "root.SubItemCache.cacheNames", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 98 }, { "content": " def contents(self):\n \"\"\"\n # was called 'caches'\n \"\"\"\n \n pass", "metadata": "root.SubItemCache.contents", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 102 }, { "content": " def initVal(self, name):\n pass", "metadata": "root.SubItemCache.initVal", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 110 }, { "content": " def itemType(self, name):\n pass", "metadata": "root.SubItemCache.itemType", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 114 }, { "content": " def load(self):\n \"\"\"\n Attempts to load the data from the cache on file.\n \n If it succeeds, it will update itself, and return the loaded items;\n if it fails, it will return None\n \"\"\"\n \n pass", "metadata": "root.SubItemCache.load", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 118 }, { "content": " def rebuild(self):\n \"\"\"\n Rebuild cache from scratch\n \n Unlike 'build', this does not attempt to load a cache file, but always\n rebuilds it by parsing the docs, etc.\n \"\"\"\n \n pass", "metadata": "root.SubItemCache.rebuild", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 129 }, { "content": " def save(self, obj=None):\n \"\"\"\n Saves the cache\n \n Will optionally update the caches from the given object (which may be\n a dictionary, or an object with the caches stored in attributes on it)\n before saving\n \"\"\"\n \n pass", "metadata": "root.SubItemCache.save", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 140 }, { "content": " def update(self, obj, cacheNames=None):\n \"\"\"\n Update all the various data from the given object, which should\n either be a dictionary, a list or tuple with the right number of items,\n or an object with the caches stored in attributes on it.\n \"\"\"\n \n pass", "metadata": "root.SubItemCache.update", "header": "['class', 'SubItemCache', '(', 'PymelCache', ')', ':', '___EOS___']", "index": 152 }, { "content": "def _dump(data, filename, protocol=-1):\n pass", "metadata": "root._dump", "header": "['module', '___EOS___']", "index": 172 }, { "content": "def mayaStartupHasStarted():\n \"\"\"\n Returns True if maya.app.startup has begun running, False otherwise.\n \n It's possible that maya.app.startup is in the process of running (ie,\n in maya.app.startup.basic, calling executeUserSetup) - unlike mayaStartup,\n this will attempt to detect if this is the case.\n \"\"\"\n\n pass", "metadata": "root.mayaStartupHasStarted", "header": "['module', '___EOS___']", "index": 176 }, { "content": "def encodeFix():\n \"\"\"\n # Fix for non US encodings in Maya\n \"\"\"\n\n pass", "metadata": "root.encodeFix", "header": "['module', '___EOS___']", "index": 188 }, { "content": "def finalize():\n pass", "metadata": "root.finalize", "header": "['module', '___EOS___']", "index": 196 }, { "content": "def initAE():\n pass", "metadata": "root.initAE", "header": "['module', '___EOS___']", "index": 200 }, { "content": "def getConfigFile():\n pass", "metadata": "root.getConfigFile", "header": "['module', '___EOS___']", "index": 204 }, { "content": "def initMEL():\n pass", "metadata": "root.initMEL", "header": "['module', '___EOS___']", "index": 208 }, { "content": "def mayaInit(forversion=None):\n \"\"\"\n Try to init Maya standalone module, use when running pymel from an external Python inerpreter,\n it is possible to pass the desired Maya version number to define which Maya to initialize\n \n \n Part of the complexity of initializing maya in standalone mode is that maya does not populate os.environ when\n parsing Maya.env. If we initialize normally, the env's are available via maya (via the shell), but not in python\n via os.environ.\n \n Note: the following example assumes that MAYA_SCRIPT_PATH is not set in your shell environment prior to launching\n python or mayapy.\n \n >>> import maya.standalone #doctest: +SKIP\n >>> maya.standalone.initialize() #doctest: +SKIP\n >>> import maya.mel as mm #doctest: +SKIP\n >>> print mm.eval(\"getenv MAYA_SCRIPT_PATH\") #doctest: +SKIP\n /Network/Servers/sv-user.luma-pictures.com/luma .....\n >>> import os #doctest: +SKIP\n >>> 'MAYA_SCRIPT_PATH' in os.environ #doctest: +SKIP\n False\n \n The solution lies in `refreshEnviron`, which copies the environment from the shell to os.environ after maya.standalone\n initializes.\n \n :rtype: bool\n :return: returns True if maya.cmds required initializing ( in other words, we are in a standalone python interpreter )\n \"\"\"\n\n pass", "metadata": "root.mayaInit", "header": "['module', '___EOS___']", "index": 212 }, { "content": "def parsePymelConfig():\n pass", "metadata": "root.parsePymelConfig", "header": "['module', '___EOS___']", "index": 244 }, { "content": "def fixMayapy2011SegFault():\n \"\"\"\n # Have all the checks inside here, in case people want to insert this in their\n # userSetup... it's currently not always on\n \"\"\"\n\n pass", "metadata": "root.fixMayapy2011SegFault", "header": "['module', '___EOS___']", "index": 248 }, { "content": "def mayaStartupHasRun():\n \"\"\"\n Returns True if maya.app.startup has already finished, False otherwise.\n \"\"\"\n\n pass", "metadata": "root.mayaStartupHasRun", "header": "['module', '___EOS___']", "index": 257 }, { "content": "def _moduleJoin(*args):\n \"\"\"\n Joins with the base pymel directory.\n :rtype: string\n \"\"\"\n\n pass", "metadata": "root._moduleJoin", "header": "['module', '___EOS___']", "index": 265 }, { "content": "def _load(filename):\n pass", "metadata": "root._load", "header": "['module', '___EOS___']", "index": 274 }, { "content": "def setupFormatting():\n pass", "metadata": "root.setupFormatting", "header": "['module', '___EOS___']", "index": 278 } ]

[ { "span": "import pymel.util.picklezip as picklezip", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 40 }, { "span": "import glob", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 11 }, { "span": "import pymel.versions as versions", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 33 }, { "span": "import inspect", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 14 }, { "span": "import cPickle as pickle", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 24 }, { "span": "import maya.OpenMaya as om", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 26 }, { "span": "import sys", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 10 }, { "span": "from pymel.util.common import subpackages", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 41 }, { "span": "from pymel.versions import shortName", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 36 }, { "span": "from collections import namedtuple", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 34 }, { "span": "from pymel.versions import installName", "start_line": 19, "start_column": 0, "end_line": 19, "end_column": 38 }, { "span": "from pymel.util.shell import shellOutput", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 40 }, { "span": "from pymel.mayautils import getUserPrefsDir", "start_line": 21, "start_column": 0, "end_line": 21, "end_column": 43 }, { "span": "from pymel.util.shell import refreshEnviron", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 43 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def _convert_x(self, x):\n # Converts non-numeric data in x to floats. x_converted is the\n # DataFrame with converted values, and x_conversion is a dict that\n # provides the reverse mapping. For example, if 'A' was converted to 0\n # for x named 'variety', then x_conversion['variety'][0] is 'A'.\n x_converted = {}\n cat_mapping = {}\n # x can be either a dict or a Panel, but in Python 3, dicts don't have\n # .iteritems\n iteritems = getattr(x, 'iteritems', x.items)\n for key, df in iteritems():\n if not isinstance(df, DataFrame):\n raise AssertionError(\"all input items must be DataFrames, \"\n \"at least one is of \"\n \"type {0}\".format(type(df)))\n\n if _is_numeric(df):\n x_converted[key] = df\n else:\n try:\n df = df.astype(float)\n except (TypeError, ValueError):\n values = df.values\n distinct_values = sorted(set(values.flat))\n cat_mapping[key] = dict(enumerate(distinct_values))\n new_values = np.searchsorted(distinct_values, values)\n x_converted[key] = DataFrame(new_values, index=df.index,\n columns=df.columns)\n\n if len(cat_mapping) == 0:\n x_converted = x\n\n return x_converted, cat_mapping", "metadata": "root.PanelOLS._convert_x", "header": "['class', 'PanelOLS', '(', 'OLS', ')', ':', '___EOS___']", "index": 173 } ]

[ { "span": "df ", "start_line": 193, "start_column": 20, "end_line": 193, "end_column": 22 } ]

[]

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[ { "content": "import json\nimport pytest\nimport requests\n\nfrom datetime import datetime, timedelta\n\nfrom .fixtures import tornado_server, tornado_app, sample_data1_server\nfrom .util import (\n assert_error, assert_success, assert_created, assert_deleted, Client\n)\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def test_malformed(sample_data1_server):\n client = sample_data1_server\n assert_error(client.post(\"/quests\", data=\"Non-JSON\"), 400)", "metadata": "root.test_malformed", "header": "['module', '___EOS___']", "index": 12 }, { "content": "def test_creation(sample_data1_server):\n client = sample_data1_server\n assert_success(\n client.get(\"/events\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalEvents\": 2\n },\n strip=[\"timestamp\", \"events\"]\n )\n\n assert_success(\n client.get(\"/quests\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalQuests\": 0,\n \"quests\": []\n }\n )\n\n assert_success(\n client.get(\"/labors\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalLabors\": 0,\n \"labors\": []\n }\n )\n\n target_time = datetime.utcnow() + timedelta(days=7)\n\n assert_created(\n client.create(\n \"/quests\",\n creator=\"johnny\",\n fateId=1,\n targetTime=str(target_time),\n description=\"This is a quest almighty\",\n hostnames=[\"example\", \"sample\", \"test\"]\n ),\n \"/api/v1/quests/1\"\n )\n\n assert_success(\n client.get(\"/labors\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalLabors\": 3,\n \"labors\": [{\"ackTime\": None,\n \"ackUser\": None,\n \"fateId\": 1,\n \"closingFateId\": None,\n \"completionEventId\": None,\n \"creationEventId\": 3,\n \"targetTime\": str(target_time),\n \"hostId\": 1,\n \"forOwner\": True,\n \"forCreator\": False,\n \"id\": 1,\n \"startingLaborId\": None,\n \"questId\": 1},\n {\"ackTime\": None,\n \"ackUser\": None,\n \"completionEventId\": None,\n \"creationEventId\": 4,\n \"targetTime\": str(target_time),\n \"hostId\": 2,\n \"forOwner\": True,\n \"forCreator\": False,\n \"fateId\": 1,\n \"closingFateId\": None,\n \"id\": 2,\n \"startingLaborId\": None,\n \"questId\": 1},\n {\"ackTime\": None,\n \"ackUser\": None,\n \"completionEventId\": None,\n \"creationEventId\": 5,\n \"targetTime\": str(target_time),\n \"hostId\": 3,\n \"forOwner\": True,\n \"forCreator\": False,\n \"fateId\": 1,\n \"closingFateId\": None,\n \"id\": 3,\n \"startingLaborId\": None,\n \"questId\": 1}],\n },\n strip=[\"creationTime\", \"completionTime\"]\n )", "metadata": "root.test_creation", "header": "['module', '___EOS___']", "index": 17 }, { "content": "def test_update(sample_data1_server):\n client = sample_data1_server\n\n # create a quest without a target_time\n assert_created(\n client.create(\n \"/quests\",\n creator=\"johnny\",\n fateId=1,\n description=\"This is a quest almighty\",\n hostnames=[\"example\", \"sample\", \"test\"]\n ),\n \"/api/v1/quests/1\"\n )\n\n # make sure 3 labors was created for this quest\n assert_success(\n client.get(\"/labors\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalLabors\": 3\n },\n strip=[\"creationTime\", \"labors\"]\n )\n\n # create a new event that would create another labor\n assert_created(\n client.create(\n \"/events\",\n hostname=\"example\",\n user=\"testman@example.com\",\n eventTypeId=1,\n note=\"This is a test event\"\n ),\n \"/api/v1/events/6\"\n )\n\n # make sure the labor is not attached to a quest\n assert_success(\n client.get(\"/labors/4\"),\n {\n \"ackTime\": None,\n \"ackUser\": None,\n \"completionEventId\": None,\n \"completionTime\": None,\n \"creationEventId\": 6,\n \"hostId\": 1,\n \"forOwner\": True,\n \"forCreator\": False,\n \"fateId\": 1,\n \"closingFateId\": None,\n \"id\": 4,\n \"startingLaborId\": None,\n \"questId\": None\n },\n strip=[\"creationTime\"]\n )\n\n # attach the labor to a quest\n response = client.update(\n \"/labors/4\",\n ackUser=\"johnny@example.com\",\n questId=1\n )\n\n # make sure the labor is attached to the quest\n assert_success(\n response,\n {\n \"ackUser\": \"johnny@example.com\",\n \"completionEventId\": None,\n \"completionTime\": None,\n \"creationEventId\": 6,\n \"targetTime\": None,\n \"hostId\": 1,\n \"fateId\": 1,\n \"closingFateId\": None,\n \"forOwner\": True,\n \"forCreator\": False,\n \"id\": 4,\n \"startingLaborId\": None,\n \"questId\": 1\n },\n strip=[\"creationTime\", \"ackTime\"]\n )\n\n assert response.json()['ackTime'] is not None", "metadata": "root.test_update", "header": "['module', '___EOS___']", "index": 113 }, { "content": "def test_labor_filter_by_eventttype(sample_data1_server):\n client = sample_data1_server\n\n assert_success(\n client.get(\"/labors\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalLabors\": 0,\n \"labors\": []\n }\n )\n\n # create a quest without a target_time\n assert_created(\n client.create(\n \"/quests\",\n creator=\"johnny\",\n fateId=1,\n description=\"This is a quest almighty\",\n hostnames=[\"example\", \"sample\", \"test\"]\n ),\n \"/api/v1/quests/1\"\n )\n\n # create a quest without a target_time\n assert_created(\n client.create(\n \"/quests\",\n creator=\"johnny\",\n fateId=3,\n description=\"This is a 2nd quest almighty\",\n hostnames=[\"example\", \"sample\", \"test\"]\n ),\n \"/api/v1/quests/2\"\n )\n\n assert_success(\n client.get(\"/labors\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalLabors\": 6,\n },\n strip=[\"labors\"]\n )\n\n assert_success(\n client.get(\"/labors?hostname=example\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalLabors\": 2\n },\n strip=[\"labors\"]\n )\n\n assert_success(\n client.get(\"/labors?category=system-reboot&state=required\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalLabors\": 3\n },\n strip=[\"labors\"]\n )\n\n assert_success(\n client.get(\"/labors?category=system-maintenance\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalLabors\": 3\n },\n strip=[\"labors\"]\n )", "metadata": "root.test_labor_filter_by_eventttype", "header": "['module', '___EOS___']", "index": 203 }, { "content": "def test_quest_expansion(sample_data1_server):\n client = sample_data1_server\n\n # create a quest without a target_time\n assert_created(\n client.create(\n \"/quests\",\n creator=\"johnny\",\n fateId=1,\n description=\"This is a quest almighty\",\n hostnames=[\"example\"]\n ),\n \"/api/v1/quests/1\"\n )\n\n assert_created(\n client.create(\n \"/events\",\n eventTypeId=1,\n hostname=\"sample\",\n user=\"testman@example.com\",\n ),\n \"/api/v1/events/4\"\n )\n\n assert_success(\n client.get(\"/labors?expand=quests\"),\n {\n \"limit\": 10,\n \"offset\": 0,\n \"totalLabors\": 2,\n \"labors\": [\n {'ackTime': None,\n 'ackUser': None,\n 'completionEventId': None,\n 'completionTime': None,\n 'creationEventId': 3,\n 'forCreator': False,\n 'forOwner': True,\n 'hostId': 1,\n 'id': 1,\n 'fateId': 1,\n \"closingFateId\": None,\n 'quest': {\n 'completionTime': None,\n 'creator': 'johnny@example.com',\n 'description': 'This is a quest almighty',\n 'id': 1,\n 'targetTime': None\n },\n 'questId': 1,\n 'startingLaborId': None,\n 'targetTime': None\n },\n {'ackTime': None,\n 'ackUser': None,\n 'completionEventId': None,\n 'completionTime': None,\n 'creationEventId': 4,\n 'forCreator': False,\n 'forOwner': True,\n 'hostId': 2,\n 'id': 2,\n 'fateId': 1,\n \"closingFateId\": None,\n 'quest': None,\n 'questId': None,\n 'startingLaborId': None\n }\n ]\n },\n strip=[\"embarkTime\", \"creationTime\"]\n )", "metadata": "root.test_quest_expansion", "header": "['module', '___EOS___']", "index": 281 } ]

[ { "span": "import json", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 11 }, { "span": "import pytest", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 13 }, { "span": "import requests", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 15 } ]

[]

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[ { "content": "from __future__ import print_function\n\nimport os\nimport sys\nimport errno\n\nfrom marmot.features.feature_extractor import FeatureExtractor\nfrom marmot.util.alignments import train_alignments, align_sentence\nfrom marmot.util.ngram_window_extractor import left_context, right_context\nfrom marmot.exceptions.no_data_error import NoDataError\n\n\n# all features that require source dictionary\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class AlignmentFeatureExtractor(FeatureExtractor):\n\n\n", "metadata": "root.AlignmentFeatureExtractor", "header": "['module', '___EOS___']", "index": 13 }, { "content": " def __init__(self, align_model='', src_file='', tg_file='', tmp_dir=None, context_size=1):\n if tmp_dir is None:\n tmp_dir = os.getcwd()\n try:\n os.makedirs(tmp_dir)\n except OSError as exc: # Python >2.5\n if exc.errno == errno.EEXIST and os.path.isdir(tmp_dir):\n pass\n else:\n raise\n self.tmp_dir = tmp_dir\n\n self.model = ''\n\n # no alignment model\n if align_model == '':\n # if src_file and tg_file are not empty, it means that an alignment model needs to be trained\n # (self.model doesn't have to be defined, if context objects have alignments)\n if os.path.isfile(src_file) and os.path.isfile(tg_file):\n self.model = train_alignments(src_file, tg_file, self.tmp_dir)\n else:\n self.model = align_model\n self.context_size = context_size", "metadata": "root.AlignmentFeatureExtractor.__init__", "header": "['class', 'AlignmentFeatureExtractor', '(', 'FeatureExtractor', ')', ':', '___EOS___']", "index": 15 }, { "content": " def get_features(self, context_obj):\n if 'source' not in context_obj or context_obj['source'] is None:\n raise NoDataError('source', context_obj, 'AlignmentFeatureExtractor')\n if 'target' not in context_obj or context_obj['source'] is None or context_obj['target'] is None:\n raise NoDataError('target', context_obj, 'AlignmentFeatureExtractor')\n\n if 'alignments' not in context_obj:\n raise NoDataError('alignments', context_obj, 'AlignmentFeatureExtractor')\n# if self.model == '':\n# raise NoDataError('alignments', context_obj, 'AlignmentFeatureExtractor')\n# context_obj['alignments'] = align_sentence(context_obj['source'], context_obj['target'], self.model)\n\n # source word(s)\n try:\n align_idx = context_obj['alignments'][context_obj['index']]\n except IndexError:\n print(\"{} items in the alignment, needed {}-th\".format(len(context_obj['alignments']), context_obj['index']))\n print(context_obj['alignments'], context_obj['target'], context_obj['source'])\n sys.exit()\n # if word is unaligned - no source and no source contexts\n if align_idx == None:\n return ['__unaligned__', '|'.join(['__unaligned__' for i in range(self.context_size)]), '|'.join(['__unaligned__' for i in range(self.context_size)])]\n\n # TODO: find contexts for all words aligned to the token (now only 1st word)\n else:\n left = '|'.join(left_context(context_obj['source'], context_obj['source'][align_idx], context_size=self.context_size, idx=align_idx))\n right = '|'.join(right_context(context_obj['source'], context_obj['source'][align_idx], context_size=self.context_size, idx=align_idx))\n\n aligned_to = context_obj['source'][align_idx]\n return [aligned_to, left, right]", "metadata": "root.AlignmentFeatureExtractor.get_features", "header": "['class', 'AlignmentFeatureExtractor', '(', 'FeatureExtractor', ')', ':', '___EOS___']", "index": 39 }, { "content": " def get_feature_names(self):\n return ['aligned_token', 'src_left_context', 'src_right_context']", "metadata": "root.AlignmentFeatureExtractor.get_feature_names", "header": "['class', 'AlignmentFeatureExtractor', '(', 'FeatureExtractor', ')', ':', '___EOS___']", "index": 70 } ]

[ { "span": "from marmot.util.alignments import train_alignments, align_sentence", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 67 } ]

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[ { "content": " def test_create(self):\n res = self.client.get('/formset/simple/')\n self.assertEqual(res.status_code, 200)\n self.assertTrue('formset' in res.context)\n self.assertFalse('form' in res.context)\n self.assertTemplateUsed(res, 'extra_views/address_formset.html')\n self.assertEqual(res.context['formset'].__class__.__name__, 'AddressFormFormSet')", "metadata": "root.FormSetViewTests.test_create", "header": "['class', 'FormSetViewTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 25 }, { "content": " def test_invalid(self):\n data = {\n 'form-0-name': 'Joe Bloggs',\n 'form-0-city': '',\n 'form-0-line1': '',\n 'form-0-line2': '',\n 'form-0-postcode': '',\n }\n data.update(self.management_data)\n\n res = self.client.post('/formset/simple/', data, follow=True)\n self.assertEqual(res.status_code, 200)\n self.assertTrue('postcode' in res.context['formset'].errors[0])", "metadata": "root.FormSetViewTests.test_invalid", "header": "['class', 'FormSetViewTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 55 }, { "content": " def test_create(self):\n res = self.client.get('/modelformset/simple/')\n self.assertEqual(res.status_code, 200)\n self.assertTrue('formset' in res.context)\n self.assertFalse('form' in res.context)\n self.assertTemplateUsed(res, 'extra_views/item_formset.html')\n self.assertEqual(res.context['formset'].__class__.__name__, 'ItemFormFormSet')", "metadata": "root.ModelFormSetViewTests.test_create", "header": "['class', 'ModelFormSetViewTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 81 }, { "content": " def test_context(self):\n order = Order(name='Dummy Order')\n order.save()\n\n for i in range(10):\n item = Item(name='Item %i' % i, sku=str(i) * 13, price=D('9.99'), order=order, status=0)\n item.save()\n\n res = self.client.get('/modelformset/simple/')\n self.assertTrue('object_list' in res.context)\n self.assertEqual(len(res.context['object_list']), 10)", "metadata": "root.ModelFormSetViewTests.test_context", "header": "['class', 'ModelFormSetViewTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 113 }, { "content": " def test_create(self):\n order = Order(name='Dummy Order')\n order.save()\n\n for i in range(10):\n item = Item(name='Item %i' % i, sku=str(i) * 13, price=D('9.99'), order=order, status=0)\n item.save()\n\n res = self.client.get('/inlineformset/{}/'.format(order.id))\n\n self.assertTrue('object' in res.context)\n self.assertTrue('order' in res.context)\n\n self.assertEqual(res.status_code, 200)\n self.assertTrue('formset' in res.context)\n self.assertFalse('form' in res.context)", "metadata": "root.InlineFormSetViewTests.test_create", "header": "['class', 'InlineFormSetViewTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 133 }, { "content": " def test_post(self):\n order = Order(name='Dummy Order')\n order.save()\n data = {}\n data.update(self.management_data)\n\n res = self.client.post('/inlineformset/{}/'.format(order.id), data, follow=True)\n self.assertEqual(res.status_code, 200)\n self.assertTrue('formset' in res.context)\n self.assertFalse('form' in res.context)", "metadata": "root.InlineFormSetViewTests.test_post", "header": "['class', 'InlineFormSetViewTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 150 }, { "content": " def test_get(self):\n order = Order(name='Dummy Order')\n order.save()\n\n order2 = Order(name='Other Order')\n order2.save()\n\n tag = Tag(name='Test', content_object=order)\n tag.save()\n\n tag = Tag(name='Test2', content_object=order2)\n tag.save()\n\n res = self.client.get('/genericinlineformset/{}/'.format(order.id))\n\n self.assertEqual(res.status_code, 200)\n self.assertTrue('formset' in res.context)\n self.assertFalse('form' in res.context)\n self.assertEqual('Test', res.context['formset'].forms[0]['name'].value())", "metadata": "root.GenericInlineFormSetViewTests.test_get", "header": "['class', 'GenericInlineFormSetViewTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 186 }, { "content": " def test_create(self):\n res = self.client.get('/inlines/new/')\n self.assertEqual(res.status_code, 200)\n self.assertEqual(0, Tag.objects.count())\n\n data = {\n 'name': 'Dummy Order',\n 'items-TOTAL_FORMS': '2',\n 'items-INITIAL_FORMS': '0',\n 'items-MAX_NUM_FORMS': '',\n 'items-0-name': 'Bubble Bath',\n 'items-0-sku': '1234567890123',\n 'items-0-price': D('9.99'),\n 'items-0-status': 0,\n 'items-1-DELETE': True,\n 'extra_views_tests-tag-content_type-object_id-TOTAL_FORMS': 2,\n 'extra_views_tests-tag-content_type-object_id-INITIAL_FORMS': 0,\n 'extra_views_tests-tag-content_type-object_id-MAX_NUM_FORMS': '',\n 'extra_views_tests-tag-content_type-object_id-0-name': 'Test',\n 'extra_views_tests-tag-content_type-object_id-1-DELETE': True,\n }\n\n res = self.client.post('/inlines/new/', data, follow=True)\n\n self.assertTrue('object' in res.context)\n self.assertTrue('order' in res.context)\n\n self.assertEqual(res.status_code, 200)\n self.assertEqual(1, Tag.objects.count())", "metadata": "root.ModelWithInlinesTests.test_create", "header": "['class', 'ModelWithInlinesTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 251 } ]

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[ { "content": "from django.shortcuts import render\nfrom django.core import serializers\nimport json\nimport datetime\nimport os\nfrom django.http import HttpResponse\nfrom django.contrib.auth.models import User\nfrom django.contrib.auth import authenticate, login, logout\nfrom django.contrib.auth.decorators import login_required\nfrom django.conf import settings\nfrom publisher.models import Publication\nfrom registrar.models import PeerReview\nfrom publisher.forms import PublicationForm\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "@login_required(login_url='/landpage')\ndef my_publications_page(request):\n try:\n publications = Publication.objects.filter(author=request.user)\n except Publication.DoesNotExist:\n publications = None\n return render(request, 'publisher/my_publication/view.html',{\n 'publications': publications,\n 'user': request.user,\n 'tab': 'my_publications',\n 'HAS_ADVERTISMENT': settings.APPLICATION_HAS_ADVERTISMENT,\n 'local_css_urls': settings.SB_ADMIN_2_CSS_LIBRARY_URLS,\n 'local_js_urls': settings.SB_ADMIN_2_JS_LIBRARY_URLS\n })", "metadata": "root.my_publications_page", "header": "['module', '___EOS___']", "index": 14 }, { "content": "@login_required()\ndef refresh_publications_table(request):\n try:\n publications = Publication.objects.filter(author=request.user)\n except Publication.DoesNotExist:\n publications = None\n return render(request, 'publisher/my_publication/table.html',{\n 'publications': publications,\n 'user': request.user,\n 'tab': 'my_publications',\n 'local_css_urls': settings.SB_ADMIN_2_CSS_LIBRARY_URLS,\n 'local_js_urls': settings.SB_ADMIN_2_JS_LIBRARY_URLS\n })", "metadata": "root.refresh_publications_table", "header": "['module', '___EOS___']", "index": 30 }, { "content": "@login_required()\ndef my_publication_modal(request):\n if request.method == u'POST':\n form = None\n publication_id = int(request.POST['publication_id'])\n if publication_id > 0:\n upload = Publication.objects.get(publication_id=publication_id)\n form = PublicationForm(instance=upload)\n else:\n form = PublicationForm()\n return render(request, 'publisher/my_publication/modal.html',{\n 'form': form,\n })", "metadata": "root.my_publication_modal", "header": "['module', '___EOS___']", "index": 45 }, { "content": "@login_required()\ndef save_publication(request):\n response_data = {'status' : 'failed', 'message' : 'unknown error with saving'}\n if request.is_ajax():\n if request.method == 'POST':\n publication_id = int(request.POST['publication_id'])\n form = PublicationForm(request.POST, request.FILES)\n \n # If publication already exists, then delete local file.\n if publication_id > 0:\n # Delete previous file.\n try:\n upload = Publication.objects.get(publication_id=publication_id)\n except Publication.DoesNotExist:\n return HttpResponse(json.dumps({\n 'status' : 'failed', 'message' : 'record does not exist'\n }), content_type=\"application/json\")\n \n if upload.file:\n if os.path.isfile(upload.file.path):\n os.remove(upload.file.path)\n upload.file = None\n upload.save()\n form.instance = upload\n \n # Save if valid\n form.instance.author = request.user\n if form.is_valid():\n form.save()\n response_data = {'status' : 'success', 'message' : 'saved'}\n else:\n response_data = {'status' : 'failed', 'message' : json.dumps(form.errors)}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")", "metadata": "root.save_publication", "header": "['module', '___EOS___']", "index": 61 }, { "content": "@login_required()\ndef delete_publication(request):\n response_data = {'status' : 'failed', 'message' : 'unknown error with deleting'}\n if request.is_ajax():\n if request.method == 'POST':\n publication_id = int(request.POST['publication_id'])\n try:\n publication = Publication.objects.get(publication_id=publication_id)\n for peer_review in publication.reviews.all():\n peer_review.delete()\n publication.delete()\n response_data = {'status' : 'success', 'message' : 'deleted'}\n except Publication.DoesNotExist:\n response_data = {'status' : 'failed', 'message' : 'record not found'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")", "metadata": "root.delete_publication", "header": "['module', '___EOS___']", "index": 96 } ]

[ { "span": "from django.core import serializers", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 35 }, { "span": "import datetime", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 15 }, { "span": "from django.contrib.auth.models import User", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 43 }, { "span": "from django.contrib.auth import authenticate, login, logout", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 59 }, { "span": "from registrar.models import PeerReview", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 39 } ]

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[ { "content": "import os\nimport sys\nimport math\nimport vtk\nimport time\nimport functools\nimport traceback\nimport PythonQt\nfrom PythonQt import QtCore, QtGui\nimport director.applogic as app\nfrom director import objectmodel as om\nfrom director import perception\nfrom director import lcmUtils\nfrom director import roboturdf\nfrom director import transformUtils\nfrom director import visualization as vis\nfrom director.transformUtils import getTransformFromAxes\nfrom director.timercallback import TimerCallback\nfrom director import mapsregistrar\nfrom director import affordancemanager\nfrom director.affordanceitems import *\nfrom director.visualization import *\nfrom director.filterUtils import *\nfrom director.fieldcontainer import FieldContainer\nfrom director.segmentationroutines import *\nfrom director import cameraview\n\nfrom thirdparty import qhull_2d\nfrom thirdparty import min_bounding_rect\n\nimport numpy as np\nimport vtkNumpy\nfrom debugVis import DebugData\nfrom shallowCopy import shallowCopy\nimport ioUtils\nfrom director.uuidutil import newUUID\n\nimport drc as lcmdrc\nimport bot_core as lcmbotcore\n\nimport vs as lcmvs\nfrom director import lcmUtils\n\n\nDRILL_TRIANGLE_BOTTOM_LEFT = 'bottom left'\nDRILL_TRIANGLE_BOTTOM_RIGHT = 'bottom right'\nDRILL_TRIANGLE_TOP_LEFT = 'top left'\nDRILL_TRIANGLE_TOP_RIGHT = 'top right'\n\n# using drc plane segmentation instead of PCL\nplaneSegmentationFilter = vtk.vtkPlaneSegmentation\n#planeSegmentationFilter = vtk.vtkPCLSACSegmentationPlane\n\n\n_defaultSegmentationView = None\n\n\n\n\n\n\n\n\n\n\n\n\n'''\nicp programmable filter\n\nimport vtkFiltersGeneralPython as filtersGeneral\n\npoints = inputs[0]\nblock = inputs[1]\n\nprint points.GetNumberOfPoints()\nprint block.GetNumberOfPoints()\n\nif points.GetNumberOfPoints() < block.GetNumberOfPoints():\n block, points = points, block\n\nicp = vtk.vtkIterativeClosestPointTransform()\nicp.SetSource(points.VTKObject)\nicp.SetTarget(block.VTKObject)\nicp.GetLandmarkTransform().SetModeToRigidBody()\nicp.Update()\n\nt = filtersGeneral.vtkTransformPolyDataFilter()\nt.SetInput(points.VTKObject)\nt.SetTransform(icp)\nt.Update()\n\noutput.ShallowCopy(t.GetOutput())\n'''\n\n\n\n\n\n\nhandAffUpdater = None\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nuseVoxelGrid = False\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nrefitWallCallbacks = []\n\n\n\n\n\n# this should be depreciated!\n\n# this should be depreciated!\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nviewPickers = []\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n####\n# debrs task ground frame\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nsavedCameraParams = None\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def getSegmentationView():\n return _defaultSegmentationView or app.getViewManager().findView('Segmentation View')", "metadata": "root.getSegmentationView", "header": "['module', '___EOS___']", "index": 55 }, { "content": "def getDRCView():\n return app.getDRCView()", "metadata": "root.getDRCView", "header": "['module', '___EOS___']", "index": 58 }, { "content": "def switchToView(viewName):\n app.getViewManager().switchToView(viewName)", "metadata": "root.switchToView", "header": "['module', '___EOS___']", "index": 62 }, { "content": "def getCurrentView():\n return app.getCurrentRenderView()", "metadata": "root.getCurrentView", "header": "['module', '___EOS___']", "index": 66 }, { "content": "def initAffordanceManager(view):\n '''\n Normally the affordance manager is initialized by the application.\n This function can be called from scripts and tests to initialize the manager.\n '''\n global affordanceManager\n affordanceManager = affordancemanager.AffordanceObjectModelManager(view)", "metadata": "root.initAffordanceManager", "header": "['module', '___EOS___']", "index": 70 }, { "content": "def cropToLineSegment(polyData, point1, point2):\n\n line = np.array(point2) - np.array(point1)\n length = np.linalg.norm(line)\n axis = line / length\n\n polyData = labelPointDistanceAlongAxis(polyData, axis, origin=point1, resultArrayName='dist_along_line')\n return thresholdPoints(polyData, 'dist_along_line', [0.0, length])", "metadata": "root.cropToLineSegment", "header": "['module', '___EOS___']", "index": 79 }, { "content": "def computeAToB(a,b):\n\n t = vtk.vtkTransform()\n t.PostMultiply()\n t.Concatenate(b)\n t.Concatenate(a.GetLinearInverse())\n tt = vtk.vtkTransform()\n tt.SetMatrix(t.GetMatrix())\n return tt", "metadata": "root.computeAToB", "header": "['module', '___EOS___']", "index": 119 }, { "content": "def lockAffordanceToHand(aff, hand='l_hand'):\n\n linkFrame = getLinkFrame(hand)\n affT = aff.actor.GetUserTransform()\n\n if not hasattr(aff, 'handToAffT') or not aff.handToAffT:\n aff.handToAffT = computeAToB(linkFrame, affT)\n\n t = vtk.vtkTransform()\n t.PostMultiply()\n t.Concatenate(aff.handToAffT)\n t.Concatenate(linkFrame)\n aff.actor.GetUserTransform().SetMatrix(t.GetMatrix())", "metadata": "root.lockAffordanceToHand", "header": "['module', '___EOS___']", "index": 130 }, { "content": "def lockToHandOn():\n aff = getDefaultAffordanceObject()\n if not aff:\n return\n\n global handAffUpdater\n if handAffUpdater is None:\n handAffUpdater = TimerCallback()\n handAffUpdater.targetFps = 30\n\n handAffUpdater.callback = functools.partial(lockAffordanceToHand, aff)\n handAffUpdater.start()", "metadata": "root.lockToHandOn", "header": "['module', '___EOS___']", "index": 147 }, { "content": "def lockToHandOff():\n\n aff = getDefaultAffordanceObject()\n if not aff:\n return\n\n handAffUpdater.stop()\n aff.handToAffT = None", "metadata": "root.lockToHandOff", "header": "['module', '___EOS___']", "index": 161 }, { "content": "class DisparityPointCloudItem(vis.PolyDataItem):\n\n\n\n\n", "metadata": "root.DisparityPointCloudItem", "header": "['module', '___EOS___']", "index": 172 }, { "content": " def __init__(self, name, imagesChannel, cameraName, imageManager):\n vis.PolyDataItem.__init__(self, name, vtk.vtkPolyData(), view=None)\n\n self.addProperty('Channel', imagesChannel)\n self.addProperty('Camera name', cameraName)\n\n self.addProperty('Decimation', 0, attributes=om.PropertyAttributes(enumNames=['1', '2', '4', '8', '16']))\n self.addProperty('Remove Size', 1000, attributes=om.PropertyAttributes(decimals=0, minimum=0, maximum=100000.0, singleStep=1000))\n self.addProperty('Target FPS', 1.0, attributes=om.PropertyAttributes(decimals=1, minimum=0.1, maximum=30.0, singleStep=0.1))\n\n self.timer = TimerCallback()\n self.timer.callback = self.update\n self.lastUtime = 0\n self.imageManager = imageManager\n self.cameraName = cameraName\n self.setProperty('Visible', False)", "metadata": "root.DisparityPointCloudItem.__init__", "header": "['class', 'DisparityPointCloudItem', '(', 'vis', '.', 'PolyDataItem', ')', ':', '___EOS___']", "index": 174 }, { "content": " def _onPropertyChanged(self, propertySet, propertyName):\n vis.PolyDataItem._onPropertyChanged(self, propertySet, propertyName)\n\n if propertyName == 'Visible':\n if self.getProperty(propertyName):\n self.timer.start()\n else:\n self.timer.stop()\n\n elif propertyName in ('Decimation', 'Remove outliers'):\n self.lastUtime = 0", "metadata": "root.DisparityPointCloudItem._onPropertyChanged", "header": "['class', 'DisparityPointCloudItem', '(', 'vis', '.', 'PolyDataItem', ')', ':', '___EOS___']", "index": 191 }, { "content": " def onRemoveFromObjectModel(self):\n vis.PolyDataItem.onRemoveFromObjectModel(self)\n self.timer.stop()", "metadata": "root.DisparityPointCloudItem.onRemoveFromObjectModel", "header": "['class', 'DisparityPointCloudItem', '(', 'vis', '.', 'PolyDataItem', ')', ':', '___EOS___']", "index": 204 }, { "content": " def update(self):\n\n utime = self.imageManager.queue.getCurrentImageTime(self.cameraName)\n if utime == self.lastUtime:\n return\n\n if (utime < self.lastUtime ):\n temp=0 # dummy\n elif (utime - self.lastUtime < 1E6/self.getProperty('Target FPS')):\n return\n\n decimation = int(self.properties.getPropertyEnumValue('Decimation'))\n removeSize = int(self.properties.getProperty('Remove Size'))\n polyData = getDisparityPointCloud(decimation, imagesChannel=self.getProperty('Channel'), cameraName=self.getProperty('Camera name'),\n removeOutliers=False, removeSize=removeSize)\n self.setPolyData(polyData)\n\n if not self.lastUtime:\n self.setProperty('Color By', 'rgb_colors')\n\n self.lastUtime = utime", "metadata": "root.DisparityPointCloudItem.update", "header": "['class', 'DisparityPointCloudItem', '(', 'vis', '.', 'PolyDataItem', ')', ':', '___EOS___']", "index": 208 }, { "content": "def extractLargestCluster(polyData, minClusterSize=100):\n\n polyData = applyEuclideanClustering(polyData, minClusterSize=minClusterSize)\n return thresholdPoints(polyData, 'cluster_labels', [1, 1])", "metadata": "root.extractLargestCluster", "header": "['module', '___EOS___']", "index": 231 }, { "content": "def segmentGround(polyData, groundThickness=0.02, sceneHeightFromGround=0.05):\n ''' A More complex ground removal algorithm. Works when plane isn't\n preceisely flat. First clusters on z to find approx ground height, then fits a plane there\n '''\n\n searchRegionThickness = 0.5\n\n zvalues = vtkNumpy.getNumpyFromVtk(polyData, 'Points')[:,2]\n groundHeight = np.percentile(zvalues, 5)\n\n vtkNumpy.addNumpyToVtk(polyData, zvalues.copy(), 'z')\n searchRegion = thresholdPoints(polyData, 'z', [groundHeight - searchRegionThickness/2.0, groundHeight + searchRegionThickness/2.0])\n\n updatePolyData(searchRegion, 'ground search region', parent=getDebugFolder(), colorByName='z', visible=False)\n\n _, origin, normal = applyPlaneFit(searchRegion, distanceThreshold=0.02, expectedNormal=[0,0,1], perpendicularAxis=[0,0,1], returnOrigin=True)\n\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n dist = np.dot(points - origin, normal)\n vtkNumpy.addNumpyToVtk(polyData, dist, 'dist_to_plane')\n\n groundPoints = thresholdPoints(polyData, 'dist_to_plane', [-groundThickness/2.0, groundThickness/2.0])\n scenePoints = thresholdPoints(polyData, 'dist_to_plane', [sceneHeightFromGround, 100])\n\n return origin, normal, groundPoints, scenePoints", "metadata": "root.segmentGround", "header": "['module', '___EOS___']", "index": 237 }, { "content": "def segmentGroundPlane():\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n inputObj.setProperty('Visible', False)\n polyData = shallowCopy(inputObj.polyData)\n\n zvalues = vtkNumpy.getNumpyFromVtk(polyData, 'Points')[:,2]\n groundHeight = np.percentile(zvalues, 5)\n searchRegion = thresholdPoints(polyData, 'z', [groundHeight - 0.3, groundHeight + 0.3])\n\n updatePolyData(searchRegion, 'ground search region', parent=getDebugFolder(), colorByName='z', visible=False)\n\n _, origin, normal = applyPlaneFit(searchRegion, distanceThreshold=0.02, expectedNormal=[0,0,1], perpendicularAxis=[0,0,1], returnOrigin=True)\n\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n dist = np.dot(points - origin, normal)\n vtkNumpy.addNumpyToVtk(polyData, dist, 'dist_to_plane')\n\n groundPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n scenePoints = thresholdPoints(polyData, 'dist_to_plane', [0.05, 10])\n\n updatePolyData(groundPoints, 'ground points', alpha=0.3)\n updatePolyData(scenePoints, 'scene points', alpha=0.3)\n\n #scenePoints = applyEuclideanClustering(scenePoints, clusterTolerance=0.10, minClusterSize=100, maxClusterSize=1e6)\n #updatePolyData(scenePoints, 'scene points', colorByName='cluster_labels')", "metadata": "root.segmentGroundPlane", "header": "['module', '___EOS___']", "index": 264 }, { "content": "def applyLocalPlaneFit(polyData, searchPoint, searchRadius, searchRadiusEnd=None, removeGroundFirst=True):\n\n useVoxelGrid = True\n voxelGridSize = 0.03\n distanceToPlaneThreshold = 0.02\n\n if useVoxelGrid:\n polyData = applyVoxelGrid(polyData, leafSize=voxelGridSize)\n\n if removeGroundFirst:\n _, polyData = removeGround(polyData, groundThickness=0.02, sceneHeightFromGround=0.04)\n\n cropped = cropToSphere(polyData, searchPoint, searchRadius)\n updatePolyData(cropped, 'crop to sphere', visible=False, colorByName='distance_to_point')\n\n polyData, normal = applyPlaneFit(polyData, distanceToPlaneThreshold, searchOrigin=searchPoint, searchRadius=searchRadius)\n\n if searchRadiusEnd is not None:\n polyData, normal = applyPlaneFit(polyData, distanceToPlaneThreshold, perpendicularAxis=normal, angleEpsilon=math.radians(30), searchOrigin=searchPoint, searchRadius=searchRadiusEnd)\n\n fitPoints = thresholdPoints(polyData, 'dist_to_plane', [-distanceToPlaneThreshold, distanceToPlaneThreshold])\n\n updatePolyData(fitPoints, 'fitPoints', visible=False)\n\n fitPoints = labelDistanceToPoint(fitPoints, searchPoint)\n clusters = extractClusters(fitPoints, clusterTolerance=0.05, minClusterSize=3)\n clusters.sort(key=lambda x: vtkNumpy.getNumpyFromVtk(x, 'distance_to_point').min())\n fitPoints = clusters[0]\n\n return fitPoints, normal\n\n\n normalEstimationSearchRadius = 0.065\n\n f = vtk.vtkPCLNormalEstimation()\n f.SetSearchRadius(normalEstimationSearchRadius)\n f.SetInput(polyData)\n f.Update()\n scenePoints = shallowCopy(f.GetOutput())\n\n normals = vtkNumpy.getNumpyFromVtk(scenePoints, 'normals')\n normalsDotPlaneNormal = np.abs(np.dot(normals, normal))\n vtkNumpy.addNumpyToVtk(scenePoints, normalsDotPlaneNormal, 'normals_dot_plane_normal')\n\n showPolyData(scenePoints, 'scene_with_normals', parent=getDebugFolder(), colorByName='normals_dot_plane_normal')\n\n surfaces = thresholdPoints(scenePoints, 'normals_dot_plane_normal', [0.95, 1.0])\n\n clusters = extractClusters(surfaces, clusterTolerance=0.1, minClusterSize=5)\n clusters = clusters[:10]\n\n for i, cluster in enumerate(clusters):\n showPolyData(cluster, 'plane cluster %i' % i, parent=getDebugFolder(), visible=False)\n\n return fitPoints", "metadata": "root.applyLocalPlaneFit", "header": "['module', '___EOS___']", "index": 292 }, { "content": "def orientToMajorPlane(polyData, pickedPoint):\n '''\n Find the largest plane and transform the cloud to align that plane\n Use the given point as the origin\n '''\n distanceToPlaneThreshold=0.02\n searchRadius = 0.5\n\n\n planePoints, origin, normal = applyPlaneFit(polyData, distanceToPlaneThreshold, searchOrigin=pickedPoint, searchRadius=searchRadius, returnOrigin=True)\n vis.updatePolyData(planePoints, 'local plane fit', color=[0,1,0], parent=getDebugFolder(), visible=False)\n\n planeFrame = transformUtils.getTransformFromOriginAndNormal(pickedPoint, normal)\n vis.updateFrame(planeFrame, 'plane frame', scale=0.15, parent=getDebugFolder(), visible=False)\n\n polyData = transformPolyData(polyData, planeFrame.GetLinearInverse() )\n\n # if the mean point is below the horizontal plane, flip the cloud\n zvalues = vtkNumpy.getNumpyFromVtk(polyData, 'Points')[:,2]\n midCloudHeight = np.mean(zvalues)\n if (midCloudHeight < 0):\n flipTransform = transformUtils.frameFromPositionAndRPY([0,0,0], [0,180,0])\n polyData = transformPolyData(polyData, flipTransform )\n\n return polyData, planeFrame", "metadata": "root.orientToMajorPlane", "header": "['module', '___EOS___']", "index": 349 }, { "content": "def getMajorPlanes(polyData, useVoxelGrid=True):\n\n voxelGridSize = 0.01\n distanceToPlaneThreshold = 0.02\n\n if useVoxelGrid:\n polyData = applyVoxelGrid(polyData, leafSize=voxelGridSize)\n\n polyDataList = []\n\n minClusterSize = 100\n\n while len(polyDataList) < 25:\n\n f = planeSegmentationFilter()\n f.SetInput(polyData)\n f.SetDistanceThreshold(distanceToPlaneThreshold)\n f.Update()\n polyData = shallowCopy(f.GetOutput())\n\n outliers = thresholdPoints(polyData, 'ransac_labels', [0, 0])\n inliers = thresholdPoints(polyData, 'ransac_labels', [1, 1])\n largestCluster = extractLargestCluster(inliers)\n\n #i = len(polyDataList)\n #showPolyData(inliers, 'inliers %d' % i, color=getRandomColor(), parent='major planes')\n #showPolyData(outliers, 'outliers %d' % i, color=getRandomColor(), parent='major planes')\n #showPolyData(largestCluster, 'cluster %d' % i, color=getRandomColor(), parent='major planes')\n\n if largestCluster.GetNumberOfPoints() > minClusterSize:\n polyDataList.append(largestCluster)\n polyData = outliers\n else:\n break\n\n return polyDataList", "metadata": "root.getMajorPlanes", "header": "['module', '___EOS___']", "index": 376 }, { "content": "def showMajorPlanes(polyData=None):\n\n if not polyData:\n inputObj = om.findObjectByName('pointcloud snapshot')\n inputObj.setProperty('Visible', False)\n polyData = inputObj.polyData\n\n om.removeFromObjectModel(om.findObjectByName('major planes'))\n folderObj = om.findObjectByName('segmentation')\n folderObj = om.getOrCreateContainer('major planes', folderObj)\n\n origin = SegmentationContext.getGlobalInstance().getViewFrame().GetPosition()\n polyData = labelDistanceToPoint(polyData, origin)\n polyData = thresholdPoints(polyData, 'distance_to_point', [1, 4])\n\n polyDataList = getMajorPlanes(polyData)\n\n for i, polyData in enumerate(polyDataList):\n obj = showPolyData(polyData, 'plane %d' % i, color=getRandomColor(), visible=True, parent='major planes')\n obj.setProperty('Point Size', 3)", "metadata": "root.showMajorPlanes", "header": "['module', '___EOS___']", "index": 414 }, { "content": "def cropToBox(polyData, transform, dimensions):\n '''\n dimensions is length 3 describing box dimensions\n '''\n origin = np.array(transform.GetPosition())\n axes = transformUtils.getAxesFromTransform(transform)\n\n for axis, length in zip(axes, dimensions):\n cropAxis = np.array(axis)*(length/2.0)\n polyData = cropToLineSegment(polyData, origin - cropAxis, origin + cropAxis)\n\n return polyData", "metadata": "root.cropToBox", "header": "['module', '___EOS___']", "index": 436 }, { "content": "def cropToBounds(polyData, transform, bounds):\n '''\n bounds is a 2x3 containing the min/max values along the transform axes to use for cropping\n '''\n origin = np.array(transform.GetPosition())\n axes = transformUtils.getAxesFromTransform(transform)\n\n for axis, bound in zip(axes, bounds):\n axis = np.array(axis)/np.linalg.norm(axis)\n polyData = cropToLineSegment(polyData, origin + axis*bound[0], origin + axis*bound[1])\n\n return polyData", "metadata": "root.cropToBounds", "header": "['module', '___EOS___']", "index": 449 }, { "content": "def cropToSphere(polyData, origin, radius):\n polyData = labelDistanceToPoint(polyData, origin)\n return thresholdPoints(polyData, 'distance_to_point', [0, radius])", "metadata": "root.cropToSphere", "header": "['module', '___EOS___']", "index": 463 }, { "content": "def applyPlaneFit(polyData, distanceThreshold=0.02, expectedNormal=None, perpendicularAxis=None, angleEpsilon=0.2, returnOrigin=False, searchOrigin=None, searchRadius=None):\n\n expectedNormal = expectedNormal if expectedNormal is not None else [-1,0,0]\n\n fitInput = polyData\n if searchOrigin is not None:\n assert searchRadius\n fitInput = cropToSphere(fitInput, searchOrigin, searchRadius)\n\n # perform plane segmentation\n f = planeSegmentationFilter()\n f.SetInput(fitInput)\n f.SetDistanceThreshold(distanceThreshold)\n if perpendicularAxis is not None:\n f.SetPerpendicularConstraintEnabled(True)\n f.SetPerpendicularAxis(perpendicularAxis)\n f.SetAngleEpsilon(angleEpsilon)\n f.Update()\n origin = f.GetPlaneOrigin()\n normal = np.array(f.GetPlaneNormal())\n\n # flip the normal if needed\n if np.dot(normal, expectedNormal) < 0:\n normal = -normal\n\n # for each point, compute signed distance to plane\n\n polyData = shallowCopy(polyData)\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n dist = np.dot(points - origin, normal)\n vtkNumpy.addNumpyToVtk(polyData, dist, 'dist_to_plane')\n\n if returnOrigin:\n return polyData, origin, normal\n else:\n return polyData, normal", "metadata": "root.applyPlaneFit", "header": "['module', '___EOS___']", "index": 468 }, { "content": "def flipNormalsWithViewDirection(polyData, viewDirection):\n normals = vnp.getNumpyFromVtk(polyData, 'normals')\n normals[np.dot(normals, viewDirection) > 0] *= -1", "metadata": "root.flipNormalsWithViewDirection", "header": "['module', '___EOS___']", "index": 506 }, { "content": "def normalEstimation(dataObj, searchCloud=None, searchRadius=0.05, useVoxelGrid=False, voxelGridLeafSize=0.05):\n\n f = vtk.vtkPCLNormalEstimation()\n f.SetSearchRadius(searchRadius)\n f.SetInput(dataObj)\n if searchCloud:\n f.SetInput(1, searchCloud)\n elif useVoxelGrid:\n f.SetInput(1, applyVoxelGrid(dataObj, voxelGridLeafSize))\n f.Update()\n dataObj = shallowCopy(f.GetOutput())\n dataObj.GetPointData().SetNormals(dataObj.GetPointData().GetArray('normals'))\n\n return dataObj", "metadata": "root.normalEstimation", "header": "['module', '___EOS___']", "index": 511 }, { "content": "def addCoordArraysToPolyData(polyData):\n polyData = shallowCopy(polyData)\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n vtkNumpy.addNumpyToVtk(polyData, points[:,0].copy(), 'x')\n vtkNumpy.addNumpyToVtk(polyData, points[:,1].copy(), 'y')\n vtkNumpy.addNumpyToVtk(polyData, points[:,2].copy(), 'z')\n\n viewFrame = SegmentationContext.getGlobalInstance().getViewFrame()\n viewOrigin = viewFrame.TransformPoint([0.0, 0.0, 0.0])\n viewX = viewFrame.TransformVector([1.0, 0.0, 0.0])\n viewY = viewFrame.TransformVector([0.0, 1.0, 0.0])\n viewZ = viewFrame.TransformVector([0.0, 0.0, 1.0])\n polyData = labelPointDistanceAlongAxis(polyData, viewX, origin=viewOrigin, resultArrayName='distance_along_view_x')\n polyData = labelPointDistanceAlongAxis(polyData, viewY, origin=viewOrigin, resultArrayName='distance_along_view_y')\n polyData = labelPointDistanceAlongAxis(polyData, viewZ, origin=viewOrigin, resultArrayName='distance_along_view_z')\n\n return polyData", "metadata": "root.addCoordArraysToPolyData", "header": "['module', '___EOS___']", "index": 527 }, { "content": "def getDebugRevolutionData():\n #dataDir = os.path.abspath(os.path.join(os.path.dirname(__file__), '../../../../drc-data'))\n #filename = os.path.join(dataDir, 'valve_wall.vtp')\n #filename = os.path.join(dataDir, 'bungie_valve.vtp')\n #filename = os.path.join(dataDir, 'cinder-blocks.vtp')\n #filename = os.path.join(dataDir, 'cylinder_table.vtp')\n #filename = os.path.join(dataDir, 'firehose.vtp')\n #filename = os.path.join(dataDir, 'debris.vtp')\n #filename = os.path.join(dataDir, 'rev1.vtp')\n #filename = os.path.join(dataDir, 'drill-in-hand.vtp')\n\n filename = os.path.expanduser('~/Desktop/scans/debris-scan.vtp')\n\n return addCoordArraysToPolyData(ioUtils.readPolyData(filename))", "metadata": "root.getDebugRevolutionData", "header": "['module', '___EOS___']", "index": 546 }, { "content": "def getCurrentScanBundle():\n obj = om.findObjectByName('SCANS_HALF_SWEEP')\n if not obj:\n return None\n\n revPolyData = obj.polyData\n if not revPolyData or not revPolyData.GetNumberOfPoints():\n return None\n\n if useVoxelGrid:\n revPolyData = applyVoxelGrid(revPolyData, leafSize=0.015)\n\n return addCoordArraysToPolyData(revPolyData)", "metadata": "root.getCurrentScanBundle", "header": "['module', '___EOS___']", "index": 562 }, { "content": "def getCurrentRevolutionData():\n revPolyData = perception._multisenseItem.model.revPolyData\n if not revPolyData or not revPolyData.GetNumberOfPoints():\n return getCurrentScanBundle()\n\n if useVoxelGrid:\n revPolyData = applyVoxelGrid(revPolyData, leafSize=0.015)\n\n return addCoordArraysToPolyData(revPolyData)", "metadata": "root.getCurrentRevolutionData", "header": "['module', '___EOS___']", "index": 577 }, { "content": "def getDisparityPointCloud(decimation=4, removeOutliers=True, removeSize=0, imagesChannel='CAMERA', cameraName='CAMERA_LEFT'):\n\n p = cameraview.getStereoPointCloud(decimation, imagesChannel=imagesChannel, cameraName=cameraName, removeSize=removeSize)\n if not p:\n return None\n\n if removeOutliers:\n # attempt to scale outlier filtering, best tuned for decimation of 2 or 4\n scaling = (10*16)/(decimation*decimation)\n p = labelOutliers(p, searchRadius=0.06, neighborsInSearchRadius=scaling)\n p = thresholdPoints(p, 'is_outlier', [0.0, 0.0])\n\n return p", "metadata": "root.getDisparityPointCloud", "header": "['module', '___EOS___']", "index": 588 }, { "content": "def getCurrentMapServerData():\n mapServer = om.findObjectByName('Map Server')\n polyData = None\n if mapServer and mapServer.getProperty('Visible'):\n polyData = mapServer.source.polyData\n\n if not polyData or not polyData.GetNumberOfPoints():\n return None\n\n return addCoordArraysToPolyData(polyData)", "metadata": "root.getCurrentMapServerData", "header": "['module', '___EOS___']", "index": 603 }, { "content": "def segmentGroundPlanes():\n\n objs = []\n for obj in om.getObjects():\n name = obj.getProperty('Name')\n if name.startswith('pointcloud snapshot'):\n objs.append(obj)\n\n objs = sorted(objs, key=lambda x: x.getProperty('Name'))\n\n d = DebugData()\n\n prevHeadAxis = None\n for obj in objs:\n name = obj.getProperty('Name')\n print '----- %s---------' % name\n print 'head axis:', obj.headAxis\n origin, normal, groundPoints, _ = segmentGround(obj.polyData)\n print 'ground normal:', normal\n showPolyData(groundPoints, name + ' ground points', visible=False)\n a = np.array([0,0,1])\n b = np.array(normal)\n diff = math.degrees(math.acos(np.dot(a,b) / (np.linalg.norm(a) * np.linalg.norm(b))))\n if diff > 90:\n print 180 - diff\n else:\n print diff\n\n if prevHeadAxis is not None:\n a = prevHeadAxis\n b = np.array(obj.headAxis)\n diff = math.degrees(math.acos(np.dot(a,b) / (np.linalg.norm(a) * np.linalg.norm(b))))\n if diff > 90:\n print 180 - diff\n else:\n print diff\n prevHeadAxis = np.array(obj.headAxis)\n\n d.addLine([0,0,0], normal)\n\n updatePolyData(d.getPolyData(), 'normals')", "metadata": "root.segmentGroundPlanes", "header": "['module', '___EOS___']", "index": 620 }, { "content": "def extractCircle(polyData, distanceThreshold=0.04, radiusLimit=None):\n\n circleFit = vtk.vtkPCLSACSegmentationCircle()\n circleFit.SetDistanceThreshold(distanceThreshold)\n circleFit.SetInput(polyData)\n if radiusLimit is not None:\n circleFit.SetRadiusLimit(radiusLimit)\n circleFit.SetRadiusConstraintEnabled(True)\n circleFit.Update()\n\n polyData = thresholdPoints(circleFit.GetOutput(), 'ransac_labels', [1.0, 1.0])\n return polyData, circleFit", "metadata": "root.extractCircle", "header": "['module', '___EOS___']", "index": 663 }, { "content": "def removeMajorPlane(polyData, distanceThreshold=0.02):\n\n # perform plane segmentation\n f = planeSegmentationFilter()\n f.SetInput(polyData)\n f.SetDistanceThreshold(distanceThreshold)\n f.Update()\n\n polyData = thresholdPoints(f.GetOutput(), 'ransac_labels', [0.0, 0.0])\n return polyData, f", "metadata": "root.removeMajorPlane", "header": "['module', '___EOS___']", "index": 677 }, { "content": "def removeGroundSimple(polyData, groundThickness=0.02, sceneHeightFromGround=0.05):\n ''' Simple ground plane removal algorithm. Uses ground height\n and does simple z distance filtering.\n Suitable for noisy data e.g. kinect/stereo camera\n (Default args should be relaxed, filtering simplfied)\n '''\n groundHeight = SegmentationContext.getGlobalInstance().getGroundHeight()\n origin = [0, 0, groundHeight]\n normal = [0, 0, 1]\n\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n dist = np.dot(points - origin, normal)\n vtkNumpy.addNumpyToVtk(polyData, dist, 'dist_to_plane')\n\n groundPoints = thresholdPoints(polyData, 'dist_to_plane', [-groundThickness/2.0, groundThickness/2.0])\n scenePoints = thresholdPoints(polyData, 'dist_to_plane', [sceneHeightFromGround, 100])\n\n return groundPoints, scenePoints", "metadata": "root.removeGroundSimple", "header": "['module', '___EOS___']", "index": 689 }, { "content": "def removeGround(polyData, groundThickness=0.02, sceneHeightFromGround=0.05):\n origin, normal, groundPoints, scenePoints = segmentGround(polyData, groundThickness, sceneHeightFromGround)\n return groundPoints, scenePoints", "metadata": "root.removeGround", "header": "['module', '___EOS___']", "index": 709 }, { "content": "def generateFeetForValve():\n\n aff = om.findObjectByName('valve affordance')\n assert aff\n\n\n params = aff.params\n\n origin = np.array(params['origin'])\n origin[2] = 0.0\n\n xaxis = -params['axis']\n zaxis = np.array([0,0,1])\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n\n stanceWidth = 0.2\n stanceRotation = 25.0\n stanceOffset = [-1.0, -0.5, 0.0]\n\n valveFrame = getTransformFromAxes(xaxis, yaxis, zaxis)\n valveFrame.PostMultiply()\n valveFrame.Translate(origin)\n\n stanceFrame, lfootFrame, rfootFrame = getFootFramesFromReferenceFrame(valveFrame, stanceWidth, stanceRotation, stanceOffset)\n\n showFrame(boardFrame, 'board ground frame', parent=aff, scale=0.15, visible=False)\n showFrame(lfootFrame, 'lfoot frame', parent=aff, scale=0.15)\n showFrame(rfootFrame, 'rfoot frame', parent=aff, scale=0.15)\n\n #d = DebugData()\n #d.addLine(valveFrame.GetPosition(), stanceFrame.GetPosition())\n #updatePolyData(d.getPolyData(), 'stance debug')\n #publishSteppingGoal(lfootFrame, rfootFrame)", "metadata": "root.generateFeetForValve", "header": "['module', '___EOS___']", "index": 714 }, { "content": "def generateFeetForDebris():\n\n aff = om.findObjectByName('board A')\n if not aff:\n return\n\n params = aff.params\n\n origin = np.array(params['origin'])\n\n origin = origin + params['zaxis']*params['zwidth']/2.0 - params['xaxis']*params['xwidth']/2.0\n origin[2] = 0.0\n\n yaxis = params['zaxis']\n zaxis = np.array([0,0,1])\n xaxis = np.cross(yaxis, zaxis)\n\n stanceWidth = 0.35\n stanceRotation = 0.0\n stanceOffset = [-0.48, -0.08, 0]\n\n boardFrame = getTransformFromAxes(xaxis, yaxis, zaxis)\n boardFrame.PostMultiply()\n boardFrame.Translate(origin)\n\n stanceFrame, lfootFrame, rfootFrame = getFootFramesFromReferenceFrame(boardFrame, stanceWidth, stanceRotation, stanceOffset)\n\n showFrame(boardFrame, 'board ground frame', parent=aff, scale=0.15, visible=False)\n lfoot = showFrame(lfootFrame, 'lfoot frame', parent=aff, scale=0.15)\n rfoot = showFrame(rfootFrame, 'rfoot frame', parent=aff, scale=0.15)\n\n for obj in [lfoot, rfoot]:\n obj.addToView(app.getDRCView())\n\n #d = DebugData()\n #d.addLine(valveFrame.GetPosition(), stanceFrame.GetPosition())\n #updatePolyData(d.getPolyData(), 'stance debug')\n #publishSteppingGoal(lfootFrame, rfootFrame)", "metadata": "root.generateFeetForDebris", "header": "['module', '___EOS___']", "index": 750 }, { "content": "def generateFeetForWye():\n\n aff = om.findObjectByName('wye points')\n if not aff:\n return\n\n params = aff.params\n\n origin = np.array(params['origin'])\n origin[2] = 0.0\n\n yaxis = params['xaxis']\n xaxis = -params['zaxis']\n zaxis = np.cross(xaxis, yaxis)\n\n stanceWidth = 0.20\n stanceRotation = 0.0\n stanceOffset = [-0.48, -0.08, 0]\n\n affGroundFrame = getTransformFromAxes(xaxis, yaxis, zaxis)\n affGroundFrame.PostMultiply()\n affGroundFrame.Translate(origin)\n\n stanceFrame, lfootFrame, rfootFrame = getFootFramesFromReferenceFrame(affGroundFrame, stanceWidth, stanceRotation, stanceOffset)\n\n showFrame(affGroundFrame, 'affordance ground frame', parent=aff, scale=0.15, visible=False)\n lfoot = showFrame(lfootFrame, 'lfoot frame', parent=aff, scale=0.15)\n rfoot = showFrame(rfootFrame, 'rfoot frame', parent=aff, scale=0.15)\n\n for obj in [lfoot, rfoot]:\n obj.addToView(app.getDRCView())", "metadata": "root.generateFeetForWye", "header": "['module', '___EOS___']", "index": 790 }, { "content": "def getFootFramesFromReferenceFrame(referenceFrame, stanceWidth, stanceRotation, stanceOffset):\n\n footHeight=0.0745342\n\n ref = vtk.vtkTransform()\n ref.SetMatrix(referenceFrame.GetMatrix())\n\n stanceFrame = vtk.vtkTransform()\n stanceFrame.PostMultiply()\n stanceFrame.RotateZ(stanceRotation)\n stanceFrame.Translate(stanceOffset)\n stanceFrame.Concatenate(ref)\n\n lfootFrame = vtk.vtkTransform()\n lfootFrame.PostMultiply()\n lfootFrame.Translate(0, stanceWidth/2.0, footHeight)\n lfootFrame.Concatenate(stanceFrame)\n\n rfootFrame = vtk.vtkTransform()\n rfootFrame.PostMultiply()\n rfootFrame.Translate(0, -stanceWidth/2.0, footHeight)\n rfootFrame.Concatenate(stanceFrame)\n\n return stanceFrame, lfootFrame, rfootFrame", "metadata": "root.getFootFramesFromReferenceFrame", "header": "['module', '___EOS___']", "index": 824 }, { "content": "def poseFromFrame(frame):\n\n trans = lcmbotcore.vector_3d_t()\n trans.x, trans.y, trans.z = frame.GetPosition()\n\n wxyz = range(4)\n perception.drc.vtkMultisenseSource.GetBotQuaternion(frame, wxyz)\n quat = lcmbotcore.quaternion_t()\n quat.w, quat.x, quat.y, quat.z = wxyz\n\n pose = lcmbotcore.position_3d_t()\n pose.translation = trans\n pose.rotation = quat\n return pose", "metadata": "root.poseFromFrame", "header": "['module', '___EOS___']", "index": 850 }, { "content": "def cropToPlane(polyData, origin, normal, threshold):\n polyData = shallowCopy(polyData)\n normal = normal/np.linalg.norm(normal)\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n dist = np.dot(points - origin, normal)\n vtkNumpy.addNumpyToVtk(polyData, dist, 'dist_to_plane')\n cropped = thresholdPoints(polyData, 'dist_to_plane', threshold)\n return cropped, polyData", "metadata": "root.cropToPlane", "header": "['module', '___EOS___']", "index": 866 }, { "content": "def createLine(blockDimensions, p1, p2):\n\n\n sliceWidth = np.array(blockDimensions).max()/2.0 + 0.02\n sliceThreshold = [-sliceWidth, sliceWidth]\n\n\n # require p1 to be point on left\n if p1[0] > p2[0]:\n p1, p2 = p2, p1\n\n _, worldPt1 = getRayFromDisplayPoint(app.getCurrentRenderView(), p1)\n _, worldPt2 = getRayFromDisplayPoint(app.getCurrentRenderView(), p2)\n\n cameraPt = np.array(app.getCurrentRenderView().camera().GetPosition())\n\n leftRay = worldPt1 - cameraPt\n rightRay = worldPt2 - cameraPt\n middleRay = (leftRay + rightRay) / 2.0\n\n\n d = DebugData()\n d.addLine(cameraPt, worldPt1)\n d.addLine(cameraPt, worldPt2)\n d.addLine(worldPt1, worldPt2)\n d.addLine(cameraPt, cameraPt + middleRay)\n updatePolyData(d.getPolyData(), 'line annotation', parent=getDebugFolder(), visible=False)\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n if inputObj:\n polyData = shallowCopy(inputObj.polyData)\n else:\n polyData = getCurrentRevolutionData()\n\n origin = cameraPt\n\n normal = np.cross(rightRay, leftRay)\n leftNormal = np.cross(normal, leftRay)\n rightNormal = np.cross(rightRay, normal)\n\n normal /= np.linalg.norm(normal)\n leftNormal /= np.linalg.norm(leftNormal)\n rightNormal /= np.linalg.norm(rightNormal)\n middleRay /= np.linalg.norm(middleRay)\n\n cropped, polyData = cropToPlane(polyData, origin, normal, sliceThreshold)\n\n updatePolyData(polyData, 'slice dist', parent=getDebugFolder(), colorByName='dist_to_plane', colorByRange=[-0.5, 0.5], visible=False)\n updatePolyData(cropped, 'slice', parent=getDebugFolder(), colorByName='dist_to_plane', visible=False)\n\n cropped, _ = cropToPlane(cropped, origin, leftNormal, [-1e6, 0])\n cropped, _ = cropToPlane(cropped, origin, rightNormal, [-1e6, 0])\n\n updatePolyData(cropped, 'slice segment', parent=getDebugFolder(), colorByName='dist_to_plane', visible=False)\n\n planePoints, planeNormal = applyPlaneFit(cropped, distanceThreshold=0.005, perpendicularAxis=middleRay, angleEpsilon=math.radians(60))\n planePoints = thresholdPoints(planePoints, 'dist_to_plane', [-0.005, 0.005])\n updatePolyData(planePoints, 'board segmentation', parent=getDebugFolder(), color=getRandomColor(), visible=False)\n\n '''\n names = ['board A', 'board B', 'board C', 'board D', 'board E', 'board F', 'board G', 'board H', 'board I']\n for name in names:\n if not om.findObjectByName(name):\n break\n else:\n name = 'board'\n '''\n name = 'board'\n\n segmentBlockByTopPlane(planePoints, blockDimensions, expectedNormal=-middleRay, expectedXAxis=middleRay, edgeSign=-1, name=name)", "metadata": "root.createLine", "header": "['module', '___EOS___']", "index": 876 }, { "content": "def updateBlockAffordances(polyData=None):\n\n for obj in om.getObjects():\n if isinstance(obj, BoxAffordanceItem):\n if 'refit' in obj.getProperty('Name'):\n om.removeFromObjectModel(obj)\n\n for obj in om.getObjects():\n if isinstance(obj, BoxAffordanceItem):\n updateBlockFit(obj, polyData)", "metadata": "root.updateBlockAffordances", "header": "['module', '___EOS___']", "index": 948 }, { "content": "def updateBlockFit(affordanceObj, polyData=None):\n\n affordanceObj.updateParamsFromActorTransform()\n\n name = affordanceObj.getProperty('Name') + ' refit'\n origin = affordanceObj.params['origin']\n normal = affordanceObj.params['yaxis']\n edgePerpAxis = affordanceObj.params['xaxis']\n blockDimensions = [affordanceObj.params['xwidth'], affordanceObj.params['ywidth']]\n\n if polyData is None:\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = shallowCopy(inputObj.polyData)\n\n cropThreshold = 0.1\n cropped = polyData\n cropped, _ = cropToPlane(cropped, origin, normal, [-cropThreshold, cropThreshold])\n cropped, _ = cropToPlane(cropped, origin, edgePerpAxis, [-cropThreshold, cropThreshold])\n\n updatePolyData(cropped, 'refit search region', parent=getDebugFolder(), visible=False)\n\n cropped = extractLargestCluster(cropped)\n\n planePoints, planeNormal = applyPlaneFit(cropped, distanceThreshold=0.005, perpendicularAxis=normal, angleEpsilon=math.radians(10))\n planePoints = thresholdPoints(planePoints, 'dist_to_plane', [-0.005, 0.005])\n updatePolyData(planePoints, 'refit board segmentation', parent=getDebugFolder(), visible=False)\n\n refitObj = segmentBlockByTopPlane(planePoints, blockDimensions, expectedNormal=normal, expectedXAxis=edgePerpAxis, edgeSign=-1, name=name)\n\n refitOrigin = np.array(refitObj.params['origin'])\n refitLength = refitObj.params['zwidth']\n refitZAxis = refitObj.params['zaxis']\n refitEndPoint1 = refitOrigin + refitZAxis*refitLength/2.0\n\n originalLength = affordanceObj.params['zwidth']\n correctedOrigin = refitEndPoint1 - refitZAxis*originalLength/2.0\n originDelta = correctedOrigin - refitOrigin\n\n refitObj.params['zwidth'] = originalLength\n refitObj.polyData.DeepCopy(affordanceObj.polyData)\n refitObj.actor.GetUserTransform().Translate(originDelta)\n refitObj.updateParamsFromActorTransform()", "metadata": "root.updateBlockFit", "header": "['module', '___EOS___']", "index": 960 }, { "content": "def startInteractiveLineDraw(blockDimensions):\n\n picker = LineDraw(app.getCurrentRenderView())\n addViewPicker(picker)\n picker.enabled = True\n picker.start()\n picker.annotationFunc = functools.partial(createLine, blockDimensions)", "metadata": "root.startInteractiveLineDraw", "header": "['module', '___EOS___']", "index": 1004 }, { "content": "def startLeverValveSegmentation():\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentLeverValve)", "metadata": "root.startLeverValveSegmentation", "header": "['module', '___EOS___']", "index": 1013 }, { "content": "def refitValveAffordance(aff, point1, origin, normal):\n\n xaxis = aff.params['xaxis']\n yaxis = aff.params['yaxis']\n zaxis = aff.params['zaxis']\n origin = aff.params['origin']\n\n zaxis = normal\n xaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n aff.actor.GetUserTransform().SetMatrix(t.GetMatrix())\n aff.updateParamsFromActorTransform()", "metadata": "root.refitValveAffordance", "header": "['module', '___EOS___']", "index": 1023 }, { "content": "def segmentValve(expectedValveRadius, point1, point2):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n\n polyData, _, wallNormal = applyPlaneFit(polyData, expectedNormal=viewPlaneNormal, searchOrigin=point1, searchRadius=0.2, angleEpsilon=0.7, returnOrigin=True)\n\n\n wallPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(wallPoints, 'wall points', parent=getDebugFolder(), visible=False)\n\n\n polyData, _, _ = applyPlaneFit(polyData, expectedNormal=wallNormal, searchOrigin=point2, searchRadius=expectedValveRadius, angleEpsilon=0.2, returnOrigin=True)\n valveCluster = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n valveCluster = cropToSphere(valveCluster, point2, expectedValveRadius*2)\n valveCluster = extractLargestCluster(valveCluster, minClusterSize=1)\n updatePolyData(valveCluster, 'valve cluster', parent=getDebugFolder(), visible=False)\n origin = np.average(vtkNumpy.getNumpyFromVtk(valveCluster, 'Points') , axis=0)\n\n zaxis = wallNormal\n xaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n zwidth = 0.03\n radius = expectedValveRadius\n\n\n d = DebugData()\n d.addLine(np.array([0,0,-zwidth/2.0]), np.array([0,0,zwidth/2.0]), radius=radius)\n\n name = 'valve affordance'\n obj = showPolyData(d.getPolyData(), name, cls=FrameAffordanceItem, parent='affordances', color=[0,1,0])\n obj.actor.SetUserTransform(t)\n obj.addToView(app.getDRCView())\n refitWallCallbacks.append(functools.partial(refitValveAffordance, obj))\n\n params = dict(axis=zaxis, radius=radius, length=zwidth, origin=origin, xaxis=xaxis, yaxis=yaxis, zaxis=zaxis,\n xwidth=radius, ywidth=radius, zwidth=zwidth,\n otdf_type='steering_cyl', friendly_name='valve')\n\n obj.setAffordanceParams(params)\n obj.updateParamsFromActorTransform()\n\n frameObj = showFrame(obj.actor.GetUserTransform(), name + ' frame', parent=obj, scale=radius, visible=False)\n frameObj.addToView(app.getDRCView())", "metadata": "root.segmentValve", "header": "['module', '___EOS___']", "index": 1044 }, { "content": "def segmentValveByBoundingBox(polyData, searchPoint):\n\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n\n polyData = cropToSphere(polyData, searchPoint, radius=0.6)\n polyData = applyVoxelGrid(polyData, leafSize=0.015)\n\n # extract tube search region\n polyData = labelDistanceToLine(polyData, searchPoint, np.array(searchPoint) + np.array([0,0,1]))\n searchRegion = thresholdPoints(polyData, 'distance_to_line', [0.0, 0.2])\n updatePolyData(searchRegion, 'valve tube search region', parent=getDebugFolder(), color=[1,0,0], visible=False)\n\n # guess valve plane\n _, origin, normal = applyPlaneFit(searchRegion, distanceThreshold=0.01, perpendicularAxis=viewDirection, angleEpsilon=math.radians(30), expectedNormal=-viewDirection, returnOrigin=True)\n\n # extract plane search region\n polyData = labelPointDistanceAlongAxis(polyData, normal, origin)\n searchRegion = thresholdPoints(polyData, 'distance_along_axis', [-0.05, 0.05])\n updatePolyData(searchRegion, 'valve plane search region', parent=getDebugFolder(), colorByName='distance_along_axis', visible=False)\n\n\n valvePoints = extractLargestCluster(searchRegion, minClusterSize=1)\n updatePolyData(valvePoints, 'valve cluster', parent=getDebugFolder(), color=[0,1,0], visible=False)\n\n\n valvePoints, _ = applyPlaneFit(valvePoints, expectedNormal=normal, perpendicularAxis=normal, distanceThreshold=0.01)\n valveFit = thresholdPoints(valvePoints, 'dist_to_plane', [-0.01, 0.01])\n\n updatePolyData(valveFit, 'valve cluster', parent=getDebugFolder(), color=[0,1,0], visible=False)\n\n points = vtkNumpy.getNumpyFromVtk(valveFit, 'Points')\n zvalues = points[:,2].copy()\n minZ = np.min(zvalues)\n maxZ = np.max(zvalues)\n\n tubeRadius = 0.017\n radius = float((maxZ - minZ) / 2.0) - tubeRadius\n\n fields = makePolyDataFields(valveFit)\n origin = np.array(fields.frame.GetPosition())\n\n #origin = computeCentroid(valveFit)\n\n zaxis = [0,0,1]\n xaxis = normal\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n pose = transformUtils.poseFromTransform(t)\n desc = dict(classname='CapsuleRingAffordanceItem', Name='valve', uuid=newUUID(), pose=pose, Color=[0,1,0], Radius=radius, Segments=20)\n desc['Tube Radius'] = tubeRadius\n\n obj = affordanceManager.newAffordanceFromDescription(desc)\n obj.params = dict(radius=radius)\n\n return obj", "metadata": "root.segmentValveByBoundingBox", "header": "['module', '___EOS___']", "index": 1099 }, { "content": "def segmentDoorPlane(polyData, doorPoint, stanceFrame):\n\n doorPoint = np.array(doorPoint)\n doorBand = 1.5\n\n polyData = cropToLineSegment(polyData, doorPoint + [0.0,0.0,doorBand/2], doorPoint - [0.0,0.0,doorBand/2])\n fitPoints, normal = applyLocalPlaneFit(polyData, doorPoint, searchRadius=0.2, searchRadiusEnd=1.0, removeGroundFirst=False)\n\n updatePolyData(fitPoints, 'door points', visible=False, color=[0,1,0])\n\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n if np.dot(normal, viewDirection) > 0:\n normal = -normal\n\n origin = computeCentroid(fitPoints)\n groundHeight = stanceFrame.GetPosition()[2]\n origin = [origin[0], origin[1], groundHeight]\n\n xaxis = -normal\n zaxis = [0,0,1]\n\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n return t", "metadata": "root.segmentDoorPlane", "header": "['module', '___EOS___']", "index": 1163 }, { "content": "def segmentValveByRim(polyData, rimPoint1, rimPoint2):\n\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n\n yaxis = np.array(rimPoint2) - np.array(rimPoint1)\n zaxis = [0,0,1]\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n\n # flip xaxis to be with view direction\n if np.dot(xaxis, viewDirection) < 0:\n xaxis = -xaxis\n\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n\n origin = (np.array(rimPoint2) + np.array(rimPoint1)) / 2.0\n\n polyData = labelPointDistanceAlongAxis(polyData, xaxis, origin)\n polyData = thresholdPoints(polyData, 'distance_along_axis', [-0.05, 0.05])\n updatePolyData(polyData, 'valve plane region', parent=getDebugFolder(), colorByName='distance_along_axis', visible=False)\n\n\n polyData = cropToSphere(polyData, origin, radius=0.4)\n polyData = applyVoxelGrid(polyData, leafSize=0.015)\n\n updatePolyData(polyData, 'valve search region', parent=getDebugFolder(), color=[1,0,0], visible=False)\n\n\n valveFit = extractLargestCluster(polyData, minClusterSize=1)\n updatePolyData(valveFit, 'valve cluster', parent=getDebugFolder(), color=[0,1,0], visible=False)\n\n points = vtkNumpy.getNumpyFromVtk(valveFit, 'Points')\n zvalues = points[:,2].copy()\n minZ = np.min(zvalues)\n maxZ = np.max(zvalues)\n\n tubeRadius = 0.017\n radius = float((maxZ - minZ) / 2.0) - tubeRadius\n\n fields = makePolyDataFields(valveFit)\n origin = np.array(fields.frame.GetPosition())\n vis.updatePolyData(transformPolyData(fields.box, fields.frame), 'valve cluster bounding box', visible=False)\n\n #origin = computeCentroid(valveFit)\n\n '''\n zaxis = [0,0,1]\n xaxis = normal\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n '''\n\n radius = np.max(fields.dims)/2.0 - tubeRadius\n\n\n proj = [np.abs(np.dot(xaxis, axis)) for axis in fields.axes]\n xaxisNew = fields.axes[np.argmax(proj)]\n if np.dot(xaxisNew, xaxis) < 0:\n xaxisNew = -xaxisNew\n\n xaxis = xaxisNew\n\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n pose = transformUtils.poseFromTransform(t)\n desc = dict(classname='CapsuleRingAffordanceItem', Name='valve', uuid=newUUID(), pose=pose, Color=[0,1,0], Radius=float(radius), Segments=20)\n desc['Tube Radius'] = tubeRadius\n\n obj = affordanceManager.newAffordanceFromDescription(desc)\n obj.params = dict(radius=radius)\n\n return obj", "metadata": "root.segmentValveByRim", "header": "['module', '___EOS___']", "index": 1196 }, { "content": "def segmentValveByWallPlane(expectedValveRadius, point1, point2):\n\n\n centerPoint = (point1 + point2) / 2.0\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n _ , polyData = removeGround(polyData)\n\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=-viewDirection, returnOrigin=True)\n\n\n perpLine = np.cross(point2 - point1, normal)\n #perpLine /= np.linalg.norm(perpLine)\n #perpLine * np.linalg.norm(point2 - point1)/2.0\n point3, point4 = centerPoint + perpLine/2.0, centerPoint - perpLine/2.0\n\n d = DebugData()\n d.addLine(point1, point2)\n d.addLine(point3, point4)\n updatePolyData(d.getPolyData(), 'crop lines', parent=getDebugFolder(), visible=False)\n\n wallPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(wallPoints, 'valve wall', parent=getDebugFolder(), visible=False)\n\n searchRegion = thresholdPoints(polyData, 'dist_to_plane', [0.05, 0.5])\n searchRegion = cropToLineSegment(searchRegion, point1, point2)\n searchRegion = cropToLineSegment(searchRegion, point3, point4)\n\n updatePolyData(searchRegion, 'valve search region', parent=getDebugFolder(), color=[1,0,0], visible=False)\n\n searchRegionSpokes = shallowCopy(searchRegion)\n\n searchRegion, origin, _ = applyPlaneFit(searchRegion, expectedNormal=normal, perpendicularAxis=normal, returnOrigin=True)\n searchRegion = thresholdPoints(searchRegion, 'dist_to_plane', [-0.015, 0.015])\n\n updatePolyData(searchRegion, 'valve search region 2', parent=getDebugFolder(), color=[0,1,0], visible=False)\n\n\n largestCluster = extractLargestCluster(searchRegion, minClusterSize=1)\n\n updatePolyData(largestCluster, 'valve cluster', parent=getDebugFolder(), color=[0,1,0], visible=False)\n\n\n radiusLimit = [expectedValveRadius - 0.01, expectedValveRadius + 0.01] if expectedValveRadius else None\n #radiusLimit = None\n\n polyData, circleFit = extractCircle(largestCluster, distanceThreshold=0.01, radiusLimit=radiusLimit)\n updatePolyData(polyData, 'circle fit', parent=getDebugFolder(), visible=False)\n\n\n #polyData, circleFit = extractCircle(polyData, distanceThreshold=0.01)\n #showPolyData(polyData, 'circle fit', colorByName='z')\n\n\n radius = circleFit.GetCircleRadius()\n origin = np.array(circleFit.GetCircleOrigin())\n circleNormal = np.array(circleFit.GetCircleNormal())\n circleNormal = circleNormal/np.linalg.norm(circleNormal)\n\n if np.dot(circleNormal, normal) < 0:\n circleNormal *= -1\n\n # force use of the plane normal\n circleNormal = normal\n radius = expectedValveRadius\n\n d = DebugData()\n d.addLine(origin - normal*radius, origin + normal*radius)\n d.addCircle(origin, circleNormal, radius)\n updatePolyData(d.getPolyData(), 'valve axes', parent=getDebugFolder(), visible=False)\n\n\n zaxis = -circleNormal\n xaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n #t = getTransformFromAxes(xaxis, yaxis, zaxis) # this was added to be consistent with segmentValveByRim\n t = getTransformFromAxes(zaxis, -yaxis, xaxis) # this was added to be consistent with segmentValveByRim\n t.PostMultiply()\n t.Translate(origin)\n\n\n # Spoke angle fitting:\n if (1==0): # disabled jan 2015\n # extract the relative positon of the points to the valve axis:\n searchRegionSpokes = labelDistanceToLine(searchRegionSpokes, origin, [origin + circleNormal])\n searchRegionSpokes = thresholdPoints(searchRegionSpokes, 'distance_to_line', [0.05, radius-0.04])\n updatePolyData(searchRegionSpokes, 'valve spoke search', parent=getDebugFolder(), visible=False)\n searchRegionSpokesLocal = transformPolyData(searchRegionSpokes, t.GetLinearInverse() )\n points = vtkNumpy.getNumpyFromVtk(searchRegionSpokesLocal , 'Points')\n\n spoke_angle = findValveSpokeAngle(points)\n else:\n spoke_angle = 0\n\n spokeAngleTransform = transformUtils.frameFromPositionAndRPY([0,0,0], [0,0,spoke_angle])\n spokeTransform = transformUtils.copyFrame(t)\n spokeAngleTransform.Concatenate(spokeTransform)\n spokeObj = showFrame(spokeAngleTransform, 'spoke frame', parent=getDebugFolder(), visible=False, scale=radius)\n spokeObj.addToView(app.getDRCView())\n t = spokeAngleTransform\n\n tubeRadius = 0.017\n\n pose = transformUtils.poseFromTransform(t)\n desc = dict(classname='CapsuleRingAffordanceItem', Name='valve', uuid=newUUID(), pose=pose, Color=[0,1,0], Radius=float(radius), Segments=20)\n desc['Tube Radius'] = tubeRadius\n\n obj = affordanceManager.newAffordanceFromDescription(desc)\n obj.params = dict(radius=radius)", "metadata": "root.segmentValveByWallPlane", "header": "['module', '___EOS___']", "index": 1281 }, { "content": "def showHistogram(polyData, arrayName, numberOfBins=100):\n\n import matplotlib.pyplot as plt\n\n x = vnp.getNumpyFromVtk(polyData, arrayName)\n hist, bins = np.histogram(x, bins=numberOfBins)\n width = 0.7 * (bins[1] - bins[0])\n center = (bins[:-1] + bins[1:]) / 2\n plt.bar(center, hist, align='center', width=width)\n plt.show()\n\n return bins[np.argmax(hist)] + (bins[1] - bins[0])/2.0", "metadata": "root.showHistogram", "header": "['module', '___EOS___']", "index": 1400 }, { "content": "def showTable(table, parent):\n '''\n explictly draw a table and its frames\n '''\n pose = transformUtils.poseFromTransform(table.frame)\n desc = dict(classname='MeshAffordanceItem', Name='table', Color=[0,1,0], pose=pose)\n aff = affordanceManager.newAffordanceFromDescription(desc)\n aff.setPolyData(table.mesh)\n\n tableBox = vis.showPolyData(table.box, 'table box', parent=aff, color=[0,1,0], visible=False)\n tableBox.actor.SetUserTransform(table.frame)", "metadata": "root.showTable", "header": "['module', '___EOS___']", "index": 1414 }, { "content": "def applyKmeansLabel(polyData, arrayName, numberOfClusters, whiten=False):\n\n import scipy.cluster\n ar = vnp.getNumpyFromVtk(polyData, arrayName).copy()\n\n if whiten:\n scipy.cluster.vq.whiten(ar)\n\n codes, disturbances = scipy.cluster.vq.kmeans(ar, numberOfClusters)\n\n if arrayName == 'normals' and numberOfClusters == 2:\n v1 = codes[0]\n v2 = codes[1]\n v1 /= np.linalg.norm(v1)\n v2 /= np.linalg.norm(v2)\n angle = np.arccos(np.dot(v1, v2))\n print 'angle between normals:', np.degrees(angle)\n\n code, distance = scipy.cluster.vq.vq(ar, codes)\n\n polyData = shallowCopy(polyData)\n vnp.addNumpyToVtk(polyData, code, '%s_kmeans_label' % arrayName)\n return polyData", "metadata": "root.applyKmeansLabel", "header": "['module', '___EOS___']", "index": 1427 }, { "content": "def findValveSpokeAngle(points):\n '''\n Determine the location of the valve spoke angle\n By binning the spoke returns. returns angle in degrees\n '''\n\n #np.savetxt(\"/home/mfallon/Desktop/spoke_points.csv\", points, delimiter=\",\")\n\n\n # convert all points to degrees in range [0,120]\n angle = np.degrees( np.arctan2( points[:,1] , points[:,0] ) )\n qq = np.where(angle < 0)[0]\n angle[qq] += 360\n angle = np.mod( angle, 120)\n\n # find the spoke as the max of a histogram:\n bins = range(0,130,10) # 0,10,...130\n freq, bins = np.histogram(angle, bins)\n amax = np.argmax(freq)\n spoke_angle = bins[amax] + 5 # correct for 5deg offset\n\n return spoke_angle", "metadata": "root.findValveSpokeAngle", "header": "['module', '___EOS___']", "index": 1452 }, { "content": "def findWallCenter(polyData, removeGroundMethod=removeGround):\n '''\n Find a frame at the center of the valve wall\n X&Y: average of points on the wall plane\n Z: 4 feet off the ground (determined using robot's feet\n Orientation: z-normal into plane, y-axis horizontal\n '''\n\n _ , polyData = removeGroundMethod(polyData)\n\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=-viewDirection, returnOrigin=True)\n\n wallPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n wallPoints = applyVoxelGrid(wallPoints, leafSize=0.03)\n wallPoints = extractLargestCluster(wallPoints, minClusterSize=100)\n\n updatePolyData(wallPoints, 'auto valve wall', parent=getDebugFolder(), visible=False)\n\n xvalues = vtkNumpy.getNumpyFromVtk(wallPoints, 'Points')[:,0]\n yvalues = vtkNumpy.getNumpyFromVtk(wallPoints, 'Points')[:,1]\n\n # median or mid of max or min?\n #xcenter = np.median(xvalues)\n #ycenter = np.median(yvalues)\n xcenter = (np.max(xvalues)+np.min(xvalues))/2\n ycenter = (np.max(yvalues)+np.min(yvalues))/2\n\n # not used, not very reliable\n #zvalues = vtkNumpy.getNumpyFromVtk(wallPoints, 'Points')[:,2]\n #zcenter = np.median(zvalues)\n zcenter = SegmentationContext.getGlobalInstance().getGroundHeight() + 1.2192 # valves are 4ft from ground\n point1 =np.array([ xcenter, ycenter, zcenter ]) # center of the valve wall\n\n zaxis = -normal\n xaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(point1)\n\n normalObj = showFrame(t, 'valve wall frame', parent=getDebugFolder(), visible=False) # z direction out of wall\n normalObj.addToView(app.getDRCView())\n\n return t", "metadata": "root.findWallCenter", "header": "['module', '___EOS___']", "index": 1477 }, { "content": "def segmentValveWallAuto(expectedValveRadius=.195, mode='both', removeGroundMethod=removeGround ):\n '''\n Automatically segment a valve hanging in front of the wall at the center\n '''\n\n # find the valve wall and its center\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n t = findWallCenter(polyData, removeGroundMethod)\n\n valve_point1 = [ 0 , 0.6 , 0]\n valveTransform1 = transformUtils.frameFromPositionAndRPY(valve_point1, [0,0,0])\n valveTransform1.Concatenate(t)\n point1 = np.array(valveTransform1.GetPosition()) # left of wall\n\n valve_point2 = [ 0 , -0.6 , 0]\n valveTransform2 = transformUtils.frameFromPositionAndRPY(valve_point2, [0,0,0])\n valveTransform2.Concatenate(t)\n point2 = np.array(valveTransform2.GetPosition()) # left of wall\n\n valve_point3 = [ 0 , 1.0 , 0] # lever can over hang\n valveTransform3 = transformUtils.frameFromPositionAndRPY(valve_point3, [0,0,0])\n valveTransform3.Concatenate(t)\n point3 =valveTransform3.GetPosition() # right of wall\n\n\n d = DebugData()\n d.addSphere(point2, radius=0.01)\n d.addSphere(point1, radius=0.03)\n d.addSphere(point3, radius=0.01)\n updatePolyData(d.getPolyData(), 'auto wall points', parent=getDebugFolder(), visible=False)\n\n if (mode=='valve'):\n segmentValveByWallPlane(expectedValveRadius, point1, point2)\n elif (mode=='lever'):\n segmentLeverByWallPlane(point1, point3)\n elif (mode=='both'):\n segmentValveByWallPlane(expectedValveRadius, point1, point2)\n segmentLeverByWallPlane(point1, point3)\n else:\n raise Exception('unexpected segmentation mode: ' + mode)", "metadata": "root.segmentValveWallAuto", "header": "['module', '___EOS___']", "index": 1527 }, { "content": "def segmentLeverByWallPlane(point1, point2):\n '''\n determine the position (including rotation of a lever near a wall\n input is as for the valve - to points on the wall either side of the lever\n '''\n\n # 1. determine the wall plane and normal\n centerPoint = (point1 + point2) / 2.0\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=-viewDirection, returnOrigin=True)\n\n # 2. Crop the cloud down to the lever only using the wall plane\n perpLine = np.cross(point2 - point1, -normal)\n #perpLine /= np.linalg.norm(perpLine)\n #perpLine * np.linalg.norm(point2 - point1)/2.0\n point3, point4 = centerPoint + perpLine/2.0, centerPoint - perpLine/2.0\n\n d = DebugData()\n d.addLine(point1, point2)\n d.addLine(point3, point4)\n updatePolyData(d.getPolyData(), 'lever crop lines', parent=getDebugFolder(), visible=False)\n\n wallPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(wallPoints, 'lever valve wall', parent=getDebugFolder(), visible=False)\n\n searchRegion = thresholdPoints(polyData, 'dist_to_plane', [0.12, 0.2]) # very tight threshold\n searchRegion = cropToLineSegment(searchRegion, point1, point2)\n searchRegion = cropToLineSegment(searchRegion, point3, point4)\n updatePolyData(searchRegion, 'lever search region', parent=getDebugFolder(), color=[1,0,0], visible=False)\n\n\n # 3. fit line to remaining points - all assumed to be the lever\n linePoint, lineDirection, _ = applyLineFit(searchRegion, distanceThreshold=0.02)\n #if np.dot(lineDirection, forwardDirection) < 0:\n # lineDirection = -lineDirection\n\n d = DebugData()\n d.addSphere(linePoint, radius=0.02)\n updatePolyData(d.getPolyData(), 'lever point', parent=getDebugFolder(), visible=False)\n\n pts = vtkNumpy.getNumpyFromVtk(searchRegion, 'Points')\n dists = np.dot(pts-linePoint, lineDirection)\n lever_center = linePoint + lineDirection*np.min(dists)\n lever_tip = linePoint + lineDirection*np.max(dists)\n\n\n # 4. determine which lever point is closest to the lower left of the wall. That's the lever_center point\n zaxis = -normal\n xaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(point1)\n\n # a distant point down and left from wall\n wall_point_lower_left = [ -20 , -20.0 , 0]\n wall_point_lower_left_Transform = transformUtils.frameFromPositionAndRPY(wall_point_lower_left, [0,0,0])\n wall_point_lower_left_Transform.Concatenate(t)\n wall_point_lower_left = wall_point_lower_left_Transform.GetPosition()\n d1 = np.sqrt( np.sum((wall_point_lower_left- projectPointToPlane(lever_center, origin, normal) )**2) )\n d2 = np.sqrt( np.sum((wall_point_lower_left- projectPointToPlane(lever_tip, origin, normal) )**2) )\n\n if (d2 < d1): # flip the points to match variable names\n p_temp = lever_center\n lever_center = lever_tip\n lever_tip = p_temp\n lineDirection = -lineDirection\n\n\n # 5. compute the rotation angle of the lever and, using that, its frame\n zaxis = -normal\n xaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(lever_center) # nominal frame at lever center\n\n rotationAngle = -computeSignedAngleBetweenVectors(lineDirection, [0, 0, 1], -normal)\n t_lever = transformUtils.frameFromPositionAndRPY( [0,0,0], [0,0, math.degrees( rotationAngle ) ] )\n t_lever.PostMultiply()\n t_lever.Concatenate(t)\n\n\n d = DebugData()\n # d.addSphere( point1 , radius=0.1)\n d.addSphere( wall_point_lower_left , radius=0.1)\n d.addSphere(lever_center, radius=0.04)\n d.addSphere(lever_tip, radius=0.01)\n d.addLine(lever_center, lever_tip)\n updatePolyData(d.getPolyData(), 'lever end points', color=[0,1,0], parent=getDebugFolder(), visible=False)\n\n\n radius = 0.01\n length = np.sqrt( np.sum((lever_tip - lever_center )**2) )\n\n d = DebugData()\n d.addLine([0,0,0], [length, 0, 0], radius=radius)\n d.addSphere ( [0, 0, 0], 0.02)\n geometry = d.getPolyData()\n\n obj = showPolyData(geometry, 'valve lever', cls=FrameAffordanceItem, parent='affordances' , color=[0,1,0], visible=True)\n obj.actor.SetUserTransform(t_lever)\n obj.addToView(app.getDRCView())\n frameObj = showFrame(t_lever, 'lever frame', parent=obj, visible=False)\n frameObj.addToView(app.getDRCView())\n\n otdfType = 'lever_valve'\n params = dict(origin=np.array(t_lever.GetPosition()), xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, xwidth=0.1, ywidth=0.1, zwidth=0.1, radius=radius, length=length, friendly_name=otdfType, otdf_type=otdfType)\n obj.setAffordanceParams(params)\n obj.updateParamsFromActorTransform()", "metadata": "root.segmentLeverByWallPlane", "header": "['module', '___EOS___']", "index": 1572 }, { "content": "def applyICP(source, target):\n\n icp = vtk.vtkIterativeClosestPointTransform()\n icp.SetSource(source)\n icp.SetTarget(target)\n icp.GetLandmarkTransform().SetModeToRigidBody()\n icp.Update()\n t = vtk.vtkTransform()\n t.SetMatrix(icp.GetMatrix())\n return t", "metadata": "root.applyICP", "header": "['module', '___EOS___']", "index": 1695 }, { "content": "def applyDiskGlyphs(polyData, computeNormals=True):\n\n voxelGridLeafSize = 0.03\n normalEstimationSearchRadius = 0.05\n diskRadius = 0.015\n diskResolution = 12\n\n if computeNormals:\n scanInput = polyData\n\n pd = applyVoxelGrid(scanInput, leafSize=voxelGridLeafSize)\n\n pd = labelOutliers(pd, searchRadius=normalEstimationSearchRadius, neighborsInSearchRadius=3)\n pd = thresholdPoints(pd, 'is_outlier', [0, 0])\n\n pd = normalEstimation(pd, searchRadius=normalEstimationSearchRadius, searchCloud=scanInput)\n else:\n pd = polyData\n\n assert polyData.GetPointData().GetNormals()\n\n disk = vtk.vtkDiskSource()\n disk.SetOuterRadius(diskRadius)\n disk.SetInnerRadius(0.0)\n disk.SetRadialResolution(0)\n disk.SetCircumferentialResolution(diskResolution)\n disk.Update()\n\n t = vtk.vtkTransform()\n t.RotateY(90)\n disk = transformPolyData(disk.GetOutput(), t)\n\n glyph = vtk.vtkGlyph3D()\n glyph.ScalingOff()\n glyph.OrientOn()\n glyph.SetSource(disk)\n glyph.SetInput(pd)\n glyph.SetVectorModeToUseNormal()\n glyph.Update()\n\n return shallowCopy(glyph.GetOutput())", "metadata": "root.applyDiskGlyphs", "header": "['module', '___EOS___']", "index": 1707 }, { "content": "def applyArrowGlyphs(polyData, computeNormals=True, voxelGridLeafSize=0.03, normalEstimationSearchRadius=0.05, arrowSize=0.02):\n\n if computeNormals:\n polyData = applyVoxelGrid(polyData, leafSize=0.02)\n voxelData = applyVoxelGrid(polyData, leafSize=voxelGridLeafSize)\n polyData = normalEstimation(polyData, searchRadius=normalEstimationSearchRadius, searchCloud=voxelData)\n polyData = removeNonFinitePoints(polyData, 'normals')\n flipNormalsWithViewDirection(polyData, SegmentationContext.getGlobalInstance().getViewDirection())\n\n assert polyData.GetPointData().GetNormals()\n\n arrow = vtk.vtkArrowSource()\n arrow.Update()\n\n glyph = vtk.vtkGlyph3D()\n glyph.SetScaleFactor(arrowSize)\n glyph.SetSource(arrow.GetOutput())\n glyph.SetInput(polyData)\n glyph.SetVectorModeToUseNormal()\n glyph.Update()\n\n return shallowCopy(glyph.GetOutput())", "metadata": "root.applyArrowGlyphs", "header": "['module', '___EOS___']", "index": 1750 }, { "content": "def segmentLeverValve(point1, point2):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=viewPlaneNormal, searchOrigin=point1, searchRadius=0.2, angleEpsilon=0.7, returnOrigin=True)\n\n\n wallPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(wallPoints, 'wall points', parent=getDebugFolder(), visible=False)\n\n radius = 0.01\n length = 0.33\n\n normal = -normal # set z to face into wall\n zaxis = normal\n xaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(point2)\n\n leverP1 = point2\n leverP2 = point2 + xaxis * length\n d = DebugData()\n d.addLine([0,0,0], [length, 0, 0], radius=radius)\n d.addSphere ( [0, 0, 0], 0.02)\n geometry = d.getPolyData()\n\n\n obj = showPolyData(geometry, 'valve lever', cls=FrameAffordanceItem, parent='affordances', color=[0,1,0], visible=True)\n obj.actor.SetUserTransform(t)\n obj.addToView(app.getDRCView())\n frameObj = showFrame(t, 'lever frame', parent=obj, visible=False)\n frameObj.addToView(app.getDRCView())\n\n otdfType = 'lever_valve'\n params = dict(origin=np.array(t.GetPosition()), xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, xwidth=0.1, ywidth=0.1, zwidth=0.1, radius=radius, length=length, friendly_name=otdfType, otdf_type=otdfType)\n obj.setAffordanceParams(params)\n obj.updateParamsFromActorTransform()", "metadata": "root.segmentLeverValve", "header": "['module', '___EOS___']", "index": 1774 }, { "content": "def segmentWye(point1, point2):\n\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=viewPlaneNormal, searchOrigin=point1, searchRadius=0.2, angleEpsilon=0.7, returnOrigin=True)\n\n\n wallPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(wallPoints, 'wall points', parent=getDebugFolder(), visible=False)\n\n wyeMesh = ioUtils.readPolyData(os.path.join(app.getDRCBase(), 'software/models/otdf/wye.obj'))\n\n wyeMeshPoint = np.array([0.0, 0.0, 0.005])\n wyeMeshLeftHandle = np.array([0.032292, 0.02949, 0.068485])\n\n xaxis = -normal\n zaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis = np.cross(xaxis, yaxis)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PreMultiply()\n t.Translate(-wyeMeshPoint)\n t.PostMultiply()\n t.Translate(point2)\n\n d = DebugData()\n d.addSphere(point2, radius=0.005)\n updatePolyData(d.getPolyData(), 'wye pick point', parent=getDebugFolder(), visible=False)\n\n wyeObj = showPolyData(wyeMesh, 'wye', cls=FrameAffordanceItem, color=[0,1,0], visible=True)\n wyeObj.actor.SetUserTransform(t)\n wyeObj.addToView(app.getDRCView())\n frameObj = showFrame(t, 'wye frame', parent=wyeObj, visible=False)\n frameObj.addToView(app.getDRCView())\n\n params = dict(origin=np.array(t.GetPosition()), xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, xwidth=0.1, ywidth=0.1, zwidth=0.1, friendly_name='wye', otdf_type='wye')\n wyeObj.setAffordanceParams(params)\n wyeObj.updateParamsFromActorTransform()", "metadata": "root.segmentWye", "header": "['module', '___EOS___']", "index": 1820 }, { "content": "def segmentDoorHandle(otdfType, point1, point2):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=viewPlaneNormal, searchOrigin=point1, searchRadius=0.2, angleEpsilon=0.7, returnOrigin=True)\n\n wallPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(wallPoints, 'wall points', parent=getDebugFolder(), visible=False)\n\n handlePoint = np.array([0.005, 0.065, 0.011])\n\n xaxis = -normal\n zaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis = np.cross(xaxis, yaxis)\n\n xwidth = 0.01\n ywidth = 0.13\n zwidth = 0.022\n cube = vtk.vtkCubeSource()\n cube.SetXLength(xwidth)\n cube.SetYLength(ywidth)\n cube.SetZLength(zwidth)\n cube.Update()\n cube = shallowCopy(cube.GetOutput())\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n #t.PreMultiply()\n #t.Translate(-handlePoint)\n t.PostMultiply()\n t.Translate(point2)\n\n name = 'door handle'\n obj = showPolyData(cube, name, cls=FrameAffordanceItem, parent='affordances')\n obj.actor.SetUserTransform(t)\n obj.addToView(app.getDRCView())\n\n params = dict(origin=origin, xwidth=xwidth, ywidth=ywidth, zwidth=zwidth, xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, friendly_name=name, otdf_type=otdfType)\n obj.setAffordanceParams(params)\n obj.updateParamsFromActorTransform()\n\n frameObj = showFrame(obj.actor.GetUserTransform(), name + ' frame', parent=obj, visible=False)\n frameObj.addToView(app.getDRCView())", "metadata": "root.segmentDoorHandle", "header": "['module', '___EOS___']", "index": 1866 }, { "content": "def segmentTruss(point1, point2):\n\n\n\n edge = point2 - point1\n edgeLength = np.linalg.norm(edge)\n\n stanceOffset = [-0.42, 0.0, 0.0]\n stanceYaw = 0.0\n\n\n d = DebugData()\n p1 = [0.0, 0.0, 0.0]\n p2 = -np.array([0.0, -1.0, 0.0]) * edgeLength\n d.addSphere(p1, radius=0.02)\n d.addSphere(p2, radius=0.02)\n d.addLine(p1, p2)\n\n stanceTransform = vtk.vtkTransform()\n stanceTransform.PostMultiply()\n stanceTransform.Translate(stanceOffset)\n #stanceTransform.RotateZ(stanceYaw)\n\n geometry = transformPolyData(d.getPolyData(), stanceTransform.GetLinearInverse())\n\n yaxis = edge/edgeLength\n zaxis = [0.0, 0.0, 1.0]\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n\n\n xwidth = 0.1\n ywidth = edgeLength\n zwidth = 0.1\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PreMultiply()\n t.Concatenate(stanceTransform)\n t.PostMultiply()\n t.Translate(point1)\n\n name = 'truss'\n otdfType = 'robot_knees'\n obj = showPolyData(geometry, name, cls=FrameAffordanceItem, parent='affordances')\n obj.actor.SetUserTransform(t)\n obj.addToView(app.getDRCView())\n\n params = dict(origin=t.GetPosition(), xwidth=xwidth, ywidth=ywidth, zwidth=zwidth, xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, friendly_name=name, otdf_type=otdfType)\n obj.setAffordanceParams(params)\n obj.updateParamsFromActorTransform()\n\n frameObj = showFrame(obj.actor.GetUserTransform(), name + ' frame', parent=obj, visible=False)\n frameObj.addToView(app.getDRCView())", "metadata": "root.segmentTruss", "header": "['module', '___EOS___']", "index": 1915 }, { "content": "def segmentHoseNozzle(point1):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n searchRegion = cropToSphere(polyData, point1, 0.10)\n updatePolyData(searchRegion, 'nozzle search region', parent=getDebugFolder(), visible=False)\n\n xaxis = [1,0,0]\n yaxis = [0,-1,0]\n zaxis = [0,0,-1]\n origin = point1\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(point1)\n\n nozzleRadius = 0.0266\n nozzleLength = 0.042\n nozzleTipRadius = 0.031\n nozzleTipLength = 0.024\n\n\n d = DebugData()\n d.addLine(np.array([0,0,-nozzleLength/2.0]), np.array([0,0,nozzleLength/2.0]), radius=nozzleRadius)\n d.addLine(np.array([0,0,nozzleLength/2.0]), np.array([0,0,nozzleLength/2.0 + nozzleTipLength]), radius=nozzleTipRadius)\n\n obj = showPolyData(d.getPolyData(), 'hose nozzle', cls=FrameAffordanceItem, color=[0,1,0], visible=True)\n obj.actor.SetUserTransform(t)\n obj.addToView(app.getDRCView())\n frameObj = showFrame(t, 'nozzle frame', parent=obj, visible=False)\n frameObj.addToView(app.getDRCView())\n\n params = dict(origin=origin, xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, xwidth=0.1, ywidth=0.1, zwidth=0.1, friendly_name='firehose', otdf_type='firehose')\n obj.setAffordanceParams(params)\n obj.updateParamsFromActorTransform()", "metadata": "root.segmentHoseNozzle", "header": "['module', '___EOS___']", "index": 1972 }, { "content": "def segmentDrillWall(point1, point2, point3):\n\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n\n\n points = [point1, point2, point3]\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n expectedNormal = np.cross(point2 - point1, point3 - point1)\n expectedNormal /= np.linalg.norm(expectedNormal)\n if np.dot(expectedNormal, viewPlaneNormal) < 0:\n expectedNormal *= -1.0\n\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=expectedNormal, searchOrigin=(point1 + point2 + point3)/3.0, searchRadius=0.3, angleEpsilon=0.3, returnOrigin=True)\n\n points = [projectPointToPlane(point, origin, normal) for point in points]\n\n xaxis = -normal\n zaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis = np.cross(xaxis, yaxis)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(points[0])\n\n d = DebugData()\n pointsInWallFrame = []\n for p in points:\n pp = np.zeros(3)\n t.GetLinearInverse().TransformPoint(p, pp)\n pointsInWallFrame.append(pp)\n d.addSphere(pp, radius=0.02)\n\n for a, b in zip(pointsInWallFrame, pointsInWallFrame[1:] + [pointsInWallFrame[0]]):\n d.addLine(a, b, radius=0.015)\n\n aff = showPolyData(d.getPolyData(), 'drill target', cls=FrameAffordanceItem, color=[0,1,0], visible=True)\n aff.actor.SetUserTransform(t)\n showFrame(t, 'drill target frame', parent=aff, visible=False)\n refitWallCallbacks.append(functools.partial(refitDrillWall, aff))\n\n params = dict(origin=points[0], xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, xwidth=0.1, ywidth=0.1, zwidth=0.1,\n p1y=pointsInWallFrame[0][1], p1z=pointsInWallFrame[0][2],\n p2y=pointsInWallFrame[1][1], p2z=pointsInWallFrame[1][2],\n p3y=pointsInWallFrame[2][1], p3z=pointsInWallFrame[2][2],\n friendly_name='drill_wall', otdf_type='drill_wall')\n\n aff.setAffordanceParams(params)\n aff.updateParamsFromActorTransform()\n aff.addToView(app.getDRCView())", "metadata": "root.segmentDrillWall", "header": "['module', '___EOS___']", "index": 2010 }, { "content": "def refitWall(point1):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=viewPlaneNormal, searchOrigin=point1, searchRadius=0.2, angleEpsilon=0.7, returnOrigin=True)\n\n wallPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(wallPoints, 'wall points', parent=getDebugFolder(), visible=False)\n\n for func in refitWallCallbacks:\n func(point1, origin, normal)", "metadata": "root.refitWall", "header": "['module', '___EOS___']", "index": 2070 }, { "content": "def refitDrillWall(aff, point1, origin, normal):\n\n t = aff.actor.GetUserTransform()\n\n targetOrigin = np.array(t.GetPosition())\n\n projectedOrigin = projectPointToPlane(targetOrigin, origin, normal)\n projectedOrigin[2] = targetOrigin[2]\n\n xaxis = -normal\n zaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis = np.cross(xaxis, yaxis)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(projectedOrigin)\n aff.actor.GetUserTransform().SetMatrix(t.GetMatrix())", "metadata": "root.refitDrillWall", "header": "['module', '___EOS___']", "index": 2086 }, { "content": "def getGroundHeightFromFeet():\n rfoot = getLinkFrame( drcargs.getDirectorConfig()['rightFootLink'] )\n return np.array(rfoot.GetPosition())[2] - 0.0745342", "metadata": "root.getGroundHeightFromFeet", "header": "['module', '___EOS___']", "index": 2108 }, { "content": "def getTranslationRelativeToFoot(t):\n rfoot = getLinkFrame( drcargs.getDirectorConfig()['rightFootLink'] )", "metadata": "root.getTranslationRelativeToFoot", "header": "['module', '___EOS___']", "index": 2113 }, { "content": "def segmentDrillWallConstrained(rightAngleLocation, point1, point2):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n expectedNormal = np.cross(point2 - point1, [0.0, 0.0, 1.0])\n expectedNormal /= np.linalg.norm(expectedNormal)\n if np.dot(expectedNormal, viewPlaneNormal) < 0:\n expectedNormal *= -1.0\n\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=expectedNormal, searchOrigin=point1, searchRadius=0.3, angleEpsilon=0.3, returnOrigin=True)\n\n triangleOrigin = projectPointToPlane(point2, origin, normal)\n\n xaxis = -normal\n zaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis = np.cross(xaxis, yaxis)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(triangleOrigin)\n\n createDrillWall(rightAngleLocation, t)", "metadata": "root.segmentDrillWallConstrained", "header": "['module', '___EOS___']", "index": 2117 }, { "content": "def createDrillWall(rightAngleLocation, trianglePose):\n\n # recover the origin and axes from the pose:\n triangleOrigin = trianglePose.GetPosition()\n xaxis, yaxis, zaxis = transformUtils.getAxesFromTransform( trianglePose )\n\n # 0.6096 = 24 * .0254 (m = feet)\n # 0.3048 = 12 * .0254 (m = feet)\n edgeRight = np.array([0.0, -1.0, 0.0]) * (0.6)\n edgeUp = np.array([0.0, 0.0, 1.0]) * (0.3)\n\n\n pointsInWallFrame = np.zeros((3,3))\n\n if rightAngleLocation == DRILL_TRIANGLE_BOTTOM_LEFT:\n pointsInWallFrame[1] = edgeUp\n pointsInWallFrame[2] = edgeRight\n\n elif rightAngleLocation == DRILL_TRIANGLE_BOTTOM_RIGHT:\n pointsInWallFrame[1] = edgeUp # edgeRight +edgeUp\n pointsInWallFrame[2] = -edgeRight # edgeRight\n\n elif rightAngleLocation == DRILL_TRIANGLE_TOP_LEFT:\n pointsInWallFrame[1] = edgeRight\n pointsInWallFrame[2] = -edgeUp\n\n elif rightAngleLocation == DRILL_TRIANGLE_TOP_RIGHT:\n pointsInWallFrame[1] = edgeRight\n pointsInWallFrame[2] = edgeRight - edgeUp\n else:\n raise Exception('unexpected value for right angle location: ', + rightAngleLocation)\n\n center = pointsInWallFrame.sum(axis=0)/3.0\n shrinkFactor = 1#0.90\n shrinkPoints = (pointsInWallFrame - center) * shrinkFactor + center\n\n d = DebugData()\n for p in pointsInWallFrame:\n d.addSphere(p, radius=0.015)\n\n for a, b in zip(pointsInWallFrame, np.vstack((pointsInWallFrame[1:], pointsInWallFrame[0]))):\n d.addLine(a, b, radius=0.005)#01)\n\n for a, b in zip(shrinkPoints, np.vstack((shrinkPoints[1:], shrinkPoints[0]))):\n d.addLine(a, b, radius=0.005)#0.025\n\n folder = om.getOrCreateContainer('affordances')\n\n wall = om.findObjectByName('wall')\n om.removeFromObjectModel(wall)\n\n aff = showPolyData(d.getPolyData(), 'wall', cls=FrameAffordanceItem, color=[0,1,0], visible=True, parent=folder)\n aff.actor.SetUserTransform(trianglePose)\n aff.addToView(app.getDRCView())\n\n refitWallCallbacks.append(functools.partial(refitDrillWall, aff))\n\n frameObj = showFrame(trianglePose, 'wall frame', parent=aff, scale=0.2, visible=False)\n frameObj.addToView(app.getDRCView())\n\n params = dict(origin=triangleOrigin, xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, xwidth=0.1, ywidth=0.1, zwidth=0.1,\n p1y=shrinkPoints[0][1], p1z=shrinkPoints[0][2],\n p2y=shrinkPoints[1][1], p2z=shrinkPoints[1][2],\n p3y=shrinkPoints[2][1], p3z=shrinkPoints[2][2],\n friendly_name='drill_wall', otdf_type='drill_wall')\n\n aff.setAffordanceParams(params)\n aff.updateParamsFromActorTransform()\n\n\n '''\n rfoot = getLinkFrame(drcargs.getDirectorConfig()['rightFootLink'])\n tt = getTransformFromAxes(xaxis, yaxis, zaxis)\n tt.PostMultiply()\n tt.Translate(rfoot.GetPosition())\n showFrame(tt, 'rfoot with wall orientation')\n aff.footToAffTransform = computeAToB(tt, trianglePose)\n\n footToAff = list(aff.footToAffTransform.GetPosition())\n tt.TransformVector(footToAff, footToAff)\n\n d = DebugData()\n d.addSphere(tt.GetPosition(), radius=0.02)\n d.addLine(tt.GetPosition(), np.array(tt.GetPosition()) + np.array(footToAff))\n showPolyData(d.getPolyData(), 'rfoot debug')\n '''", "metadata": "root.createDrillWall", "header": "['module', '___EOS___']", "index": 2145 }, { "content": "def getDrillAffordanceParams(origin, xaxis, yaxis, zaxis, drillType=\"dewalt_button\"):\n\n if (drillType==\"dewalt_button\"):\n params = dict(origin=origin, xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, xwidth=0.1, ywidth=0.1, zwidth=0.1,\n button_x=0.007,\n button_y=-0.035,\n button_z=-0.06,\n button_roll=-90.0,\n button_pitch=-90.0,\n button_yaw=0.0,\n bit_x=-0.01,\n bit_y=0.0,\n bit_z=0.15,\n bit_roll=0,\n bit_pitch=-90,\n bit_yaw=0,\n friendly_name='dewalt_button', otdf_type='dewalt_button')\n else:\n params = dict(origin=origin, xaxis=xaxis, yaxis=yaxis, zaxis=zaxis, xwidth=0.1, ywidth=0.1, zwidth=0.1,\n button_x=0.007,\n button_y=-0.035,\n button_z=-0.06,\n button_roll=0.0,\n button_pitch=0.0,\n button_yaw=0.0,\n bit_x=0.18,\n bit_y=0.0,\n bit_z=0.13,\n bit_roll=0,\n bit_pitch=0,\n bit_yaw=0,\n friendly_name='dewalt_barrel', otdf_type='dewalt_barrel')\n\n return params", "metadata": "root.getDrillAffordanceParams", "header": "['module', '___EOS___']", "index": 2233 }, { "content": "def getDrillMesh(applyBitOffset=False):\n\n button = np.array([0.007, -0.035, -0.06])\n drillMesh = ioUtils.readPolyData(os.path.join(app.getDRCBase(), 'software/models/otdf/dewalt_button.obj'))\n\n if applyBitOffset:\n t = vtk.vtkTransform()\n t.Translate(0.01, 0.0, 0.0)\n drillMesh = transformPolyData(drillMesh, t)\n\n d = DebugData()\n d.addPolyData(drillMesh)\n d.addSphere(button, radius=0.005, color=[0,1,0])\n d.addLine([0.0,0.0,0.155], [0.0, 0.0, 0.14], radius=0.001, color=[0,1,0])\n\n return shallowCopy(d.getPolyData())", "metadata": "root.getDrillMesh", "header": "['module', '___EOS___']", "index": 2269 }, { "content": "def getDrillBarrelMesh():\n return ioUtils.readPolyData(os.path.join(app.getDRCBase(), 'software/models/otdf/dewalt.ply'), computeNormals=True)", "metadata": "root.getDrillBarrelMesh", "header": "['module', '___EOS___']", "index": 2289 }, { "content": "def segmentDrill(point1, point2, point3):\n\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=viewPlaneNormal, searchOrigin=point1, searchRadius=0.2, angleEpsilon=0.7, returnOrigin=True)\n\n\n tablePoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(tablePoints, 'table plane points', parent=getDebugFolder(), visible=False)\n\n\n searchRegion = thresholdPoints(polyData, 'dist_to_plane', [0.03, 0.4])\n searchRegion = cropToSphere(searchRegion, point2, 0.30)\n drillPoints = extractLargestCluster(searchRegion)\n\n drillToTopPoint = np.array([-0.002904, -0.010029, 0.153182])\n\n zaxis = normal\n yaxis = point3 - point2\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis = np.cross(zaxis, xaxis)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PreMultiply()\n t.Translate(-drillToTopPoint)\n t.PostMultiply()\n t.Translate(point2)\n\n drillMesh = getDrillMesh()\n\n aff = showPolyData(drillMesh, 'drill', cls=FrameAffordanceItem, visible=True)\n aff.actor.SetUserTransform(t)\n showFrame(t, 'drill frame', parent=aff, visible=False).addToView(app.getDRCView())\n\n params = getDrillAffordanceParams(origin, xaxis, yaxis, zaxis)\n aff.setAffordanceParams(params)\n aff.updateParamsFromActorTransform()\n aff.addToView(app.getDRCView())", "metadata": "root.segmentDrill", "header": "['module', '___EOS___']", "index": 2293 }, { "content": "def makePolyDataFields(pd):\n mesh = computeDelaunay3D(pd)\n\n if not mesh.GetNumberOfPoints():\n return None\n\n origin, edges, wireframe = getOrientedBoundingBox(mesh)\n\n edgeLengths = np.array([np.linalg.norm(edge) for edge in edges])\n axes = [edge / np.linalg.norm(edge) for edge in edges]\n\n # Use upward axis for z direction\n zaxis = [0, 0, 1]\n dot_products = [ np.dot(axe, zaxis) for axe in axes ]\n axes = [ axes[i] for i in np.argsort( dot_products ) ]\n edgeLengths = [ edgeLengths[i] for i in np.argsort( dot_products ) ]\n\n boxCenter = computeCentroid(wireframe)\n\n t = getTransformFromAxes(axes[0], axes[1], axes[2])\n t.PostMultiply()\n t.Translate(boxCenter)\n\n pd = transformPolyData(pd, t.GetLinearInverse())\n wireframe = transformPolyData(wireframe, t.GetLinearInverse())\n mesh = transformPolyData(mesh, t.GetLinearInverse())\n\n return FieldContainer(points=pd, box=wireframe, mesh=mesh, frame=t, dims=edgeLengths, axes=axes)", "metadata": "root.makePolyDataFields", "header": "['module', '___EOS___']", "index": 2339 }, { "content": "def makeMovable(obj, initialTransform=None):\n '''\n Adds a child frame to the given PolyDataItem. If initialTransform is not\n given, then an origin frame is computed for the polydata using the\n center and orientation of the oriented bounding of the polydata. The polydata\n is transformed using the inverse of initialTransform and then a child frame\n is assigned to the object to reposition it.\n '''\n pd = obj.polyData\n t = initialTransform\n\n if t is None:\n origin, edges, wireframe = getOrientedBoundingBox(pd)\n edgeLengths = np.array([np.linalg.norm(edge) for edge in edges])\n axes = [edge / np.linalg.norm(edge) for edge in edges]\n boxCenter = computeCentroid(wireframe)\n t = getTransformFromAxes(axes[0], axes[1], axes[2])\n t.PostMultiply()\n t.Translate(boxCenter)\n\n pd = transformPolyData(pd, t.GetLinearInverse())\n obj.setPolyData(pd)\n\n frame = obj.getChildFrame()\n if frame:\n frame.copyFrame(t)\n else:\n frame = vis.showFrame(t, obj.getProperty('Name') + ' frame', parent=obj, scale=0.2, visible=False)\n obj.actor.SetUserTransform(t)", "metadata": "root.makeMovable", "header": "['module', '___EOS___']", "index": 2369 }, { "content": "def segmentTable(polyData, searchPoint):\n '''\n NB: If you wish to use the table frame use segmentTableAndFrame instead \n ##################\n Segment a horizontal table surface (perpendicular to +Z) in the given polyData\n Input:\n - polyData\n - search point on plane\n\n Output:\n - polyData, tablePoints, origin, normal\n - polyData is the input polyData with a new 'dist_to_plane' attribute.\n '''\n expectedNormal = np.array([0.0, 0.0, 1.0])\n tableNormalEpsilon = 0.4\n\n polyData = applyVoxelGrid(polyData, leafSize=0.01)\n\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=expectedNormal, perpendicularAxis=expectedNormal, searchOrigin=searchPoint, searchRadius=0.3, angleEpsilon=tableNormalEpsilon, returnOrigin=True)\n tablePoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n\n tablePoints = labelDistanceToPoint(tablePoints, searchPoint)\n tablePointsClusters = extractClusters(tablePoints, minClusterSize=10, clusterTolerance=0.1)\n tablePointsClusters.sort(key=lambda x: vtkNumpy.getNumpyFromVtk(x, 'distance_to_point').min())\n\n tablePoints = tablePointsClusters[0]\n\n updatePolyData(tablePoints, 'table plane points', parent=getDebugFolder(), visible=False)\n updatePolyData(tablePoints, 'table points', parent=getDebugFolder(), visible=False)\n\n return polyData, tablePoints, origin, normal", "metadata": "root.segmentTable", "header": "['module', '___EOS___']", "index": 2400 }, { "content": "def filterClusterObjects(clusters):\n\n result = []\n for cluster in clusters:\n\n if np.abs(np.dot(cluster.axes[2], [0,0,1])) < 0.5:\n continue\n\n if cluster.dims[2] < 0.1:\n continue\n\n result.append(cluster)\n return result", "metadata": "root.filterClusterObjects", "header": "['module', '___EOS___']", "index": 2433 }, { "content": "def segmentTableScene(polyData, searchPoint, filterClustering = True):\n objectClusters, tableData = segmentTableSceneClusters(polyData, searchPoint)\n\n clusters = [makePolyDataFields(cluster) for cluster in objectClusters]\n clusters = [cluster for cluster in clusters if cluster is not None]\n\n # Add an additional frame to these objects which has z-axis aligned upwards\n # but rotated to have the x-axis facing away from the robot\n table_axes= transformUtils.getAxesFromTransform(tableData.frame)\n for cluster in clusters:\n cluster_axes= transformUtils.getAxesFromTransform(cluster.frame)\n\n zaxis = cluster_axes[2]\n xaxis = table_axes[0]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n orientedFrame = transformUtils.getTransformFromAxesAndOrigin(xaxis, yaxis, zaxis, cluster.frame.GetPosition() )\n cluster._add_fields(oriented_frame=orientedFrame)\n\n if (filterClustering):\n clusters = filterClusterObjects(clusters)\n\n return FieldContainer(table=tableData, clusters=clusters)", "metadata": "root.segmentTableScene", "header": "['module', '___EOS___']", "index": 2449 }, { "content": "def segmentTableSceneClusters(polyData, searchPoint, clusterInXY=False):\n ''' Given a point cloud of a table with some objects on it\n and a point on that table\n determine the plane of the table and\n extract clusters above the table\n '''\n\n tableData, polyData = segmentTableAndFrame(polyData, searchPoint)\n\n searchRegion = thresholdPoints(polyData, 'dist_to_plane', [0.02, 0.5])\n # TODO: replace with 'all points above the table':\n searchRegion = cropToSphere(searchRegion, tableData.frame.GetPosition() , 0.5) # was 1.0\n\n showFrame(tableData.frame, 'tableFrame', visible=False, parent=getDebugFolder(), scale=0.15)\n showPolyData(searchRegion, 'searchRegion', color=[1,0,0], visible=False, parent=getDebugFolder())\n\n objectClusters = extractClusters(searchRegion, clusterInXY, clusterTolerance=0.02, minClusterSize=10)\n\n #print 'got %d clusters' % len(objectClusters)\n for i,c in enumerate(objectClusters):\n name= \"cluster %d\" % i\n showPolyData(c, name, color=getRandomColor(), visible=False, parent=getDebugFolder())\n\n return objectClusters, tableData", "metadata": "root.segmentTableSceneClusters", "header": "['module', '___EOS___']", "index": 2476 }, { "content": "def segmentTableAndFrame(polyData, searchPoint):\n '''\n Segment a table using a searchPoint on the table top\n and then recover its coordinate frame, facing away from the robot\n Objects/points on the table are ignored\n\n Input: polyData and searchPoint on the table\n\n Output: FieldContainer with:\n - all relevent details about the table (only)\n\n '''\n\n polyData, tablePoints, _, _ = segmentTable(polyData, searchPoint)\n tableMesh = computeDelaunay3D(tablePoints)\n\n viewFrame = SegmentationContext.getGlobalInstance().getViewFrame()\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n robotYaw = math.atan2( viewDirection[1], viewDirection[0] )*180.0/np.pi\n linkFrame = transformUtils.frameFromPositionAndRPY( viewFrame.GetPosition() , [0,0, robotYaw ] ) \n\n # Function returns corner point that is far right from the robot\n cornerTransform, rectDepth, rectWidth, _ = findMinimumBoundingRectangle(tablePoints, linkFrame)\n rectHeight = 0.02 # arbitrary table width\n \n # recover mid point\n t = transformUtils.copyFrame(cornerTransform)\n t.PreMultiply()\n table_center = [-rectDepth/2, rectWidth/2, 0]\n t3 = transformUtils.frameFromPositionAndRPY(table_center,[0,0,0])\n t.Concatenate(t3)\n\n # Create required outputs\n edgeLengths = [rectDepth, rectWidth, rectHeight]\n tableXAxis, tableYAxis, tableZAxis = transformUtils.getAxesFromTransform(t)\n axes = tableXAxis, tableYAxis, tableZAxis\n wf = vtk.vtkOutlineSource()\n wf.SetBounds([-rectDepth/2,rectDepth/2, -rectWidth/2,rectWidth/2, -rectHeight/2,rectHeight/2])\n #wf.SetBoxTypeToOriented()\n #cube =[0,0,0,1,0,0,0,1,0,1,1,0,0,0,1,1,0,1,0,1,1,1,1,1]\n #wf.SetCorners(cube)\n wireframe = wf.GetOutput()\n\n tablePoints = transformPolyData(tablePoints, t.GetLinearInverse())\n #wireframe = transformPolyData(wireframe, t.GetLinearInverse())\n tableMesh = transformPolyData(tableMesh, t.GetLinearInverse())\n\n return FieldContainer(points=tablePoints, box=wireframe, mesh=tableMesh, frame=t, dims=edgeLengths, axes=axes), polyData", "metadata": "root.segmentTableAndFrame", "header": "['module', '___EOS___']", "index": 2502 }, { "content": "def segmentDrillAuto(point1, polyData=None):\n\n if polyData is None:\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n expectedNormal = np.array([0.0, 0.0, 1.0])\n\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=expectedNormal, perpendicularAxis=expectedNormal, searchOrigin=point1, searchRadius=0.4, angleEpsilon=0.2, returnOrigin=True)\n\n\n tablePoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(tablePoints, 'table plane points', parent=getDebugFolder(), visible=False)\n\n tablePoints = labelDistanceToPoint(tablePoints, point1)\n tablePointsClusters = extractClusters(tablePoints)\n tablePointsClusters.sort(key=lambda x: vtkNumpy.getNumpyFromVtk(x, 'distance_to_point').min())\n\n tablePoints = tablePointsClusters[0]\n updatePolyData(tablePoints, 'table points', parent=getDebugFolder(), visible=False)\n\n searchRegion = thresholdPoints(polyData, 'dist_to_plane', [0.03, 0.4])\n searchRegion = cropToSphere(searchRegion, point1, 0.30)\n drillPoints = extractLargestCluster(searchRegion, minClusterSize=1)\n\n\n # determine drill orientation (rotation about z axis)\n\n centroids = computeCentroids(drillPoints, axis=normal)\n\n centroidsPolyData = vtkNumpy.getVtkPolyDataFromNumpyPoints(centroids)\n d = DebugData()\n updatePolyData(centroidsPolyData, 'cluster centroids', parent=getDebugFolder(), visible=False)\n\n drillToTopPoint = np.array([-0.002904, -0.010029, 0.153182])\n\n zaxis = normal\n yaxis = centroids[0] - centroids[-1]\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis = np.cross(zaxis, xaxis)\n\n # note this hack to orient the drill correctly:\n t = getTransformFromAxes(yaxis, -xaxis, zaxis)\n t.PreMultiply()\n t.Translate(-drillToTopPoint)\n t.PostMultiply()\n t.Translate(centroids[-1])\n\n drillMesh = getDrillMesh()\n\n aff = showPolyData(drillMesh, 'drill', cls=FrameAffordanceItem, visible=True)\n aff.actor.SetUserTransform(t)\n showFrame(t, 'drill frame', parent=aff, visible=False, scale=0.2).addToView(app.getDRCView())\n\n params = getDrillAffordanceParams(origin, xaxis, yaxis, zaxis)\n aff.setAffordanceParams(params)\n aff.updateParamsFromActorTransform()\n aff.addToView(app.getDRCView())", "metadata": "root.segmentDrillAuto", "header": "['module', '___EOS___']", "index": 2552 }, { "content": "def segmentDrillButton(point1):\n d = DebugData()\n d.addSphere([0,0,0], radius=0.005)\n obj = updatePolyData(d.getPolyData(), 'sensed drill button', color=[0,0.5,0.5], visible=True)\n\n # there is no orientation, but this allows the XYZ point to be queried\n pointerTipFrame = transformUtils.frameFromPositionAndRPY(point1, [0,0,0])\n obj.actor.SetUserTransform(pointerTipFrame)\n obj.addToView(app.getDRCView())\n\n frameObj = updateFrame(obj.actor.GetUserTransform(), 'sensed drill button frame', parent=obj, scale=0.2, visible=False)\n frameObj.addToView(app.getDRCView())", "metadata": "root.segmentDrillButton", "header": "['module', '___EOS___']", "index": 2615 }, { "content": "def segmentPointerTip(point1):\n d = DebugData()\n d.addSphere([0,0,0], radius=0.005)\n obj = updatePolyData(d.getPolyData(), 'sensed pointer tip', color=[0.5,0.5,0.0], visible=True)\n\n # there is no orientation, but this allows the XYZ point to be queried\n pointerTipFrame = transformUtils.frameFromPositionAndRPY(point1, [0,0,0])\n obj.actor.SetUserTransform(pointerTipFrame)\n obj.addToView(app.getDRCView())\n\n frameObj = updateFrame(obj.actor.GetUserTransform(), 'sensed pointer tip frame', parent=obj, scale=0.2, visible=False)\n frameObj.addToView(app.getDRCView())", "metadata": "root.segmentPointerTip", "header": "['module', '___EOS___']", "index": 2629 }, { "content": "def fitGroundObject(polyData=None, expectedDimensionsMin=[0.2, 0.02], expectedDimensionsMax=[1.3, 0.1]):\n\n removeGroundFunc = removeGroundSimple\n\n polyData = polyData or getCurrentRevolutionData()\n groundPoints, scenePoints = removeGroundFunc(polyData, groundThickness=0.02, sceneHeightFromGround=0.035)\n\n searchRegion = thresholdPoints(scenePoints, 'dist_to_plane', [0.05, 0.2])\n\n clusters = extractClusters(searchRegion, clusterTolerance=0.07, minClusterSize=4)\n\n candidates = []\n for clusterId, cluster in enumerate(clusters):\n\n\n origin, edges, _ = getOrientedBoundingBox(cluster)\n edgeLengths = [np.linalg.norm(edge) for edge in edges[:2]]\n\n found = (expectedDimensionsMin[0] <= edgeLengths[0] < expectedDimensionsMax[0]\n and expectedDimensionsMin[1] <= edgeLengths[1] < expectedDimensionsMax[1])\n\n if not found:\n updatePolyData(cluster, 'candidate cluster %d' % clusterId, color=[1,1,0], parent=getDebugFolder(), visible=False)\n continue\n\n updatePolyData(cluster, 'cluster %d' % clusterId, color=[0,1,0], parent=getDebugFolder(), visible=False)\n candidates.append(cluster)\n\n if not candidates:\n return None\n\n\n viewFrame = SegmentationContext.getGlobalInstance().getViewFrame()\n viewOrigin = np.array(viewFrame.GetPosition())\n\n dists = [np.linalg.norm(viewOrigin - computeCentroid(cluster)) for cluster in candidates]\n candidates = [candidates[i] for i in np.argsort(dists)]\n\n cluster = candidates[0]\n obj = makePolyDataFields(cluster)\n\n return vis.showClusterObjects([obj], parent='segmentation')[0]", "metadata": "root.fitGroundObject", "header": "['module', '___EOS___']", "index": 2643 }, { "content": "def findHorizontalSurfaces(polyData, removeGroundFirst=False, normalEstimationSearchRadius=0.05,\n clusterTolerance=0.025, minClusterSize=150, distanceToPlaneThreshold=0.0025, normalsDotUpRange=[0.95, 1.0], showClusters=False):\n '''\n Find the horizontal surfaces, tuned to work with walking terrain\n '''\n\n searchZ = [0.0, 2.0]\n voxelGridLeafSize = 0.01\n verboseFlag = False\n\n if (removeGroundFirst):\n groundPoints, scenePoints = removeGround(polyData, groundThickness=0.02, sceneHeightFromGround=0.05)\n scenePoints = thresholdPoints(scenePoints, 'dist_to_plane', searchZ)\n updatePolyData(groundPoints, 'ground points', parent=getDebugFolder(), visible=verboseFlag)\n else:\n scenePoints = polyData\n\n\n\n if not scenePoints.GetNumberOfPoints():\n return\n\n f = vtk.vtkPCLNormalEstimation()\n f.SetSearchRadius(normalEstimationSearchRadius)\n f.SetInput(scenePoints)\n f.SetInput(1, applyVoxelGrid(scenePoints, voxelGridLeafSize))\n\n # Duration 0.2 sec for V1 log:\n f.Update()\n scenePoints = shallowCopy(f.GetOutput())\n\n normals = vtkNumpy.getNumpyFromVtk(scenePoints, 'normals')\n normalsDotUp = np.abs(np.dot(normals, [0,0,1]))\n\n vtkNumpy.addNumpyToVtk(scenePoints, normalsDotUp, 'normals_dot_up')\n surfaces = thresholdPoints(scenePoints, 'normals_dot_up', normalsDotUpRange)\n\n updatePolyData(scenePoints, 'scene points', parent=getDebugFolder(), colorByName='normals_dot_up', visible=verboseFlag)\n updatePolyData(surfaces, 'surfaces points', parent=getDebugFolder(), colorByName='normals_dot_up', visible=verboseFlag)\n\n clusters = extractClusters(surfaces, clusterTolerance=clusterTolerance, minClusterSize=minClusterSize)\n planeClusters = []\n clustersLarge = []\n\n om.removeFromObjectModel(om.findObjectByName('surface clusters'))\n folder = om.getOrCreateContainer('surface clusters', parentObj=getDebugFolder())\n\n for i, cluster in enumerate(clusters):\n\n updatePolyData(cluster, 'surface cluster %d' % i, parent=folder, color=getRandomColor(), visible=verboseFlag)\n planePoints, _ = applyPlaneFit(cluster, distanceToPlaneThreshold)\n planePoints = thresholdPoints(planePoints, 'dist_to_plane', [-distanceToPlaneThreshold, distanceToPlaneThreshold])\n\n if planePoints.GetNumberOfPoints() > minClusterSize:\n clustersLarge.append(cluster)\n obj = makePolyDataFields(planePoints)\n if obj is not None:\n planeClusters.append(obj)\n\n folder = om.getOrCreateContainer('surface objects', parentObj=getDebugFolder())\n if showClusters:\n vis.showClusterObjects(planeClusters, parent=folder)\n\n return clustersLarge", "metadata": "root.findHorizontalSurfaces", "header": "['module', '___EOS___']", "index": 2686 }, { "content": "def fitVerticalPosts(polyData):\n\n groundPoints, scenePoints = removeGround(polyData)\n scenePoints = thresholdPoints(scenePoints, 'dist_to_plane', [0.1, 4.0])\n\n if not scenePoints.GetNumberOfPoints():\n return\n\n scenePoints = applyVoxelGrid(scenePoints, leafSize=0.03)\n clusters = extractClusters(scenePoints, clusterTolerance=0.15, minClusterSize=10)\n\n\n\n\n def isPostCluster(cluster, lineDirection):\n\n up = [0,0,1]\n minPostLength = 1.0\n maxRadius = 0.3\n angle = math.degrees(math.acos(np.dot(up,lineDirection) / (np.linalg.norm(up) * np.linalg.norm(lineDirection))))\n\n if angle > 15:\n return False\n\n origin, edges, _ = getOrientedBoundingBox(cluster)\n edgeLengths = [np.linalg.norm(edge) for edge in edges]\n\n if edgeLengths[0] < minPostLength:\n return False\n\n # extract top half\n zvalues = vtkNumpy.getNumpyFromVtk(cluster, 'Points')[:,2].copy()\n vtkNumpy.addNumpyToVtk(cluster, zvalues, 'z')\n\n minZ = np.min(zvalues)\n maxZ = np.max(zvalues)\n\n cluster = thresholdPoints(cluster, 'z', [(minZ + maxZ)/2.0, maxZ])\n origin, edges, _ = getOrientedBoundingBox(cluster)\n edgeLengths = [np.linalg.norm(edge) for edge in edges]\n\n if edgeLengths[1] > maxRadius or edgeLengths[2] > maxRadius:\n return False\n\n return True\n\n def makeCylinderAffordance(linePoints, lineDirection, lineOrigin, postId):\n\n pts = vtkNumpy.getNumpyFromVtk(linePoints, 'Points')\n dists = np.dot(pts-lineOrigin, lineDirection)\n p1 = lineOrigin + lineDirection*np.min(dists)\n p2 = lineOrigin + lineDirection*np.max(dists)\n\n origin = (p1+p2)/2.0\n lineLength = np.linalg.norm(p2-p1)\n t = transformUtils.getTransformFromOriginAndNormal(origin, lineDirection)\n pose = transformUtils.poseFromTransform(t)\n\n desc = dict(classname='CylinderAffordanceItem', Name='post %d' % postId,\n uuid=newUUID(), pose=pose, Radius=0.05, Length=float(lineLength), Color=[0.0, 1.0, 0.0])\n desc['Collision Enabled'] = True\n\n return affordanceManager.newAffordanceFromDescription(desc)\n\n\n rejectFolder = om.getOrCreateContainer('nonpost clusters', parentObj=getDebugFolder())\n keepFolder = om.getOrCreateContainer('post clusters', parentObj=getDebugFolder())\n\n for i, cluster in enumerate(clusters):\n\n linePoint, lineDirection, linePoints = applyLineFit(cluster, distanceThreshold=0.1)\n if isPostCluster(cluster, lineDirection):\n vis.showPolyData(cluster, 'cluster %d' % i, visible=False, color=getRandomColor(), alpha=0.5, parent=keepFolder)\n makeCylinderAffordance(linePoints, lineDirection, linePoint, i)\n else:\n vis.showPolyData(cluster, 'cluster %d' % i, visible=False, color=getRandomColor(), alpha=0.5, parent=rejectFolder)", "metadata": "root.fitVerticalPosts", "header": "['module', '___EOS___']", "index": 2752 }, { "content": "def findAndFitDrillBarrel(polyData=None):\n ''' Find the horizontal surfaces\n on the horizontal surfaces, find all the drills\n '''\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = polyData or inputObj.polyData\n\n groundPoints, scenePoints = removeGround(polyData, groundThickness=0.02, sceneHeightFromGround=0.50)\n\n scenePoints = thresholdPoints(scenePoints, 'dist_to_plane', [0.5, 1.7])\n\n if not scenePoints.GetNumberOfPoints():\n return\n\n normalEstimationSearchRadius = 0.10\n\n f = vtk.vtkPCLNormalEstimation()\n f.SetSearchRadius(normalEstimationSearchRadius)\n f.SetInput(scenePoints)\n f.Update()\n scenePoints = shallowCopy(f.GetOutput())\n\n normals = vtkNumpy.getNumpyFromVtk(scenePoints, 'normals')\n normalsDotUp = np.abs(np.dot(normals, [0,0,1]))\n\n vtkNumpy.addNumpyToVtk(scenePoints, normalsDotUp, 'normals_dot_up')\n\n surfaces = thresholdPoints(scenePoints, 'normals_dot_up', [0.95, 1.0])\n\n\n updatePolyData(groundPoints, 'ground points', parent=getDebugFolder(), visible=False)\n updatePolyData(scenePoints, 'scene points', parent=getDebugFolder(), colorByName='normals_dot_up', visible=False)\n updatePolyData(surfaces, 'surfaces', parent=getDebugFolder(), visible=False)\n\n clusters = extractClusters(surfaces, clusterTolerance=0.15, minClusterSize=50)\n\n fitResults = []\n\n viewFrame = SegmentationContext.getGlobalInstance().getViewFrame()\n forwardDirection = np.array([1.0, 0.0, 0.0])\n viewFrame.TransformVector(forwardDirection, forwardDirection)\n robotOrigin = viewFrame.GetPosition()\n robotForward =forwardDirection\n\n #print 'robot origin:', robotOrigin\n #print 'robot forward:', robotForward\n centroid =[]\n\n for clusterId, cluster in enumerate(clusters):\n clusterObj = updatePolyData(cluster, 'surface cluster %d' % clusterId, color=[1,1,0], parent=getDebugFolder(), visible=False)\n\n origin, edges, _ = getOrientedBoundingBox(cluster)\n edgeLengths = [np.linalg.norm(edge) for edge in edges[:2]]\n\n skipCluster = False\n for edgeLength in edgeLengths:\n #print 'cluster %d edge length: %f' % (clusterId, edgeLength)\n if edgeLength < 0.35 or edgeLength > 0.75:\n skipCluster = True\n\n if skipCluster:\n continue\n\n clusterObj.setSolidColor([0, 0, 1])\n centroid = np.average(vtkNumpy.getNumpyFromVtk(cluster, 'Points'), axis=0)\n\n try:\n drillFrame = segmentDrillBarrelFrame(centroid, polyData=scenePoints, forwardDirection=robotForward)\n if drillFrame is not None:\n fitResults.append((clusterObj, drillFrame))\n except:\n print traceback.format_exc()\n print 'fit drill failed for cluster:', clusterId\n\n if not fitResults:\n return\n\n sortFittedDrills(fitResults, robotOrigin, robotForward)\n\n return centroid", "metadata": "root.findAndFitDrillBarrel", "header": "['module', '___EOS___']", "index": 2831 }, { "content": "def sortFittedDrills(fitResults, robotOrigin, robotForward):\n\n angleToFitResults = []\n\n for fitResult in fitResults:\n cluster, drillFrame = fitResult\n drillOrigin = np.array(drillFrame.GetPosition())\n angleToDrill = np.abs(computeSignedAngleBetweenVectors(robotForward, drillOrigin - robotOrigin, [0,0,1]))\n angleToFitResults.append((angleToDrill, cluster, drillFrame))\n #print 'angle to candidate drill:', angleToDrill\n\n angleToFitResults.sort(key=lambda x: x[0])\n\n #print 'using drill at angle:', angleToFitResults[0][0]\n\n drillMesh = getDrillBarrelMesh()\n\n for i, fitResult in enumerate(angleToFitResults):\n\n angleToDrill, cluster, drillFrame = fitResult\n\n if i == 0:\n\n drill = om.findObjectByName('drill')\n drill = updatePolyData(drillMesh, 'drill', color=[0, 1, 0], cls=FrameAffordanceItem, visible=True)\n drillFrame = updateFrame(drillFrame, 'drill frame', parent=drill, visible=False)\n drill.actor.SetUserTransform(drillFrame.transform)\n\n drill.setAffordanceParams(dict(otdf_type='dewalt_button', friendly_name='dewalt_button'))\n drill.updateParamsFromActorTransform()\n\n drill.setSolidColor([0, 1, 0])\n #cluster.setProperty('Visible', True)\n\n else:\n\n drill = showPolyData(drillMesh, 'drill candidate', color=[1,0,0], visible=False, parent=getDebugFolder())\n drill.actor.SetUserTransform(drillFrame)\n om.addToObjectModel(drill, parentObj=getDebugFolder())", "metadata": "root.sortFittedDrills", "header": "['module', '___EOS___']", "index": 2913 }, { "content": "def computeSignedAngleBetweenVectors(v1, v2, perpendicularVector):\n '''\n Computes the signed angle between two vectors in 3d, given a perpendicular vector\n to determine sign. Result returned is radians.\n '''\n v1 = np.array(v1)\n v2 = np.array(v2)\n perpendicularVector = np.array(perpendicularVector)\n v1 /= np.linalg.norm(v1)\n v2 /= np.linalg.norm(v2)\n perpendicularVector /= np.linalg.norm(perpendicularVector)\n return math.atan2(np.dot(perpendicularVector, np.cross(v1, v2)), np.dot(v1, v2))", "metadata": "root.computeSignedAngleBetweenVectors", "header": "['module', '___EOS___']", "index": 2954 }, { "content": "def segmentDrillBarrelFrame(point1, polyData, forwardDirection):\n\n tableClusterSearchRadius = 0.4\n drillClusterSearchRadius = 0.5 #0.3\n\n\n expectedNormal = np.array([0.0, 0.0, 1.0])\n\n if not polyData.GetNumberOfPoints():\n return\n\n polyData, plane_origin, plane_normal = applyPlaneFit(polyData, expectedNormal=expectedNormal,\n perpendicularAxis=expectedNormal, searchOrigin=point1,\n searchRadius=tableClusterSearchRadius, angleEpsilon=0.2, returnOrigin=True)\n\n\n if not polyData.GetNumberOfPoints():\n return\n\n tablePoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(tablePoints, 'table plane points', parent=getDebugFolder(), visible=False)\n\n tablePoints = labelDistanceToPoint(tablePoints, point1)\n tablePointsClusters = extractClusters(tablePoints)\n tablePointsClusters.sort(key=lambda x: vtkNumpy.getNumpyFromVtk(x, 'distance_to_point').min())\n\n if not tablePointsClusters:\n return\n\n tablePoints = tablePointsClusters[0]\n updatePolyData(tablePoints, 'table points', parent=getDebugFolder(), visible=False)\n\n searchRegion = thresholdPoints(polyData, 'dist_to_plane', [0.02, 0.3])\n if not searchRegion.GetNumberOfPoints():\n return\n\n searchRegion = cropToSphere(searchRegion, point1, drillClusterSearchRadius)\n #drillPoints = extractLargestCluster(searchRegion, minClusterSize=1)\n\n t = fitDrillBarrel (searchRegion, forwardDirection, plane_origin, plane_normal)\n return t", "metadata": "root.segmentDrillBarrelFrame", "header": "['module', '___EOS___']", "index": 2968 }, { "content": "def segmentDrillBarrel(point1):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n forwardDirection = -np.array(getCurrentView().camera().GetViewPlaneNormal())\n\n t = segmentDrillBarrel(point1, polyData, forwardDirection)\n assert t is not None\n\n drillMesh = getDrillBarrelMesh()\n\n aff = showPolyData(drillMesh, 'drill', visible=True)\n aff.addToView(app.getDRCView())\n\n aff.actor.SetUserTransform(t)\n drillFrame = showFrame(t, 'drill frame', parent=aff, visible=False)\n drillFrame.addToView(app.getDRCView())\n return aff, drillFrame", "metadata": "root.segmentDrillBarrel", "header": "['module', '___EOS___']", "index": 3014 }, { "content": "def segmentDrillAlignedWithTable(point, polyData = None):\n '''\n Yet Another Drill Fitting Algorithm [tm]\n This one fits the button drill assuming its on the table\n and aligned with the table frame (because the button drill orientation is difficult to find)\n Table must have long side facing robot\n '''\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = polyData or inputObj.polyData\n\n # segment the table and recover the precise up direction normal:\n polyDataOut, tablePoints, origin, normal = segmentTable(polyData,point)\n #print origin # this origin is bunk\n #tableCentroid = computeCentroid(tablePoints)\n\n # get the bounding box edges\n OBBorigin, edges, _ = getOrientedBoundingBox(tablePoints)\n #print \"OBB out\"\n #print OBBorigin\n #print edges\n edgeLengths = np.array([np.linalg.norm(edge) for edge in edges])\n axes = [edge / np.linalg.norm(edge) for edge in edges]\n #print edgeLengths\n #print axes\n\n # check which direction the robot is facing and flip x-axis of table if necessary\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n #print \"main axes\", axes[1]\n #print \"viewDirection\", viewDirection\n #dp = np.dot(axes[1], viewDirection)\n #print dp\n\n if np.dot(axes[1], viewDirection) < 0:\n #print \"flip the x-direction\"\n axes[1] = -axes[1]\n\n\n # define the x-axis to be along the 2nd largest edge\n xaxis = axes[1]\n xaxis = np.array(xaxis)\n zaxis = np.array( normal )\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n tableOrientation = transformUtils.getTransformFromAxes(xaxis, yaxis, zaxis)\n\n #tableTransform = transformUtils.frameFromPositionAndRPY( tableCentroid , tableOrientation.GetOrientation() )\n #updateFrame(tableTransform, 'table frame [z up, x away face]', parent=\"segmentation\", visible=True).addToView(app.getDRCView())\n\n data = segmentTableScene(polyData, point )\n #vis.showClusterObjects(data.clusters + [data.table], parent='segmentation')\n\n # crude use of the table frame to determine the frame of the drill on the table\n #t2 = transformUtils.frameFromPositionAndRPY([0,0,0], [180, 0 , 90] )\n #drillOrientationTransform = transformUtils.copyFrame( om.findObjectByName('object 1 frame').transform )\n #drillOrientationTransform.PreMultiply()\n #drillOrientationTransform.Concatenate(t2)\n #vis.updateFrame(t, 'drillOrientationTransform',visible=True)\n\n #table_xaxis, table_yaxis, table_zaxis = transformUtils.getAxesFromTransform( data.table.frame )\n #drillOrientation = transformUtils.orientationFromAxes( table_yaxis, table_xaxis, -1*np.array( table_zaxis) )\n drillTransform = transformUtils.frameFromPositionAndRPY( data.clusters[0].frame.GetPosition() , tableOrientation.GetOrientation() )\n\n drillMesh = getDrillMesh()\n\n drill = om.findObjectByName('drill')\n om.removeFromObjectModel(drill)\n\n aff = showPolyData(drillMesh, 'drill', color=[0.0, 1.0, 0.0], cls=FrameAffordanceItem, visible=True)\n aff.actor.SetUserTransform(drillTransform)\n aff.addToView(app.getDRCView())\n\n frameObj = updateFrame(drillTransform, 'drill frame', parent=aff, scale=0.2, visible=False)\n frameObj.addToView(app.getDRCView())\n\n params = getDrillAffordanceParams(np.array(drillTransform.GetPosition()), [1,0,0], [0,1,0], [0,0,1], drillType=\"dewalt_button\")\n aff.setAffordanceParams(params)", "metadata": "root.segmentDrillAlignedWithTable", "header": "['module', '___EOS___']", "index": 3036 }, { "content": "def segmentDrillInHand(p1, p2):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n distanceToLineThreshold = 0.05\n\n polyData = labelDistanceToLine(polyData, p1, p2)\n polyData = thresholdPoints(polyData, 'distance_to_line', [0.0, distanceToLineThreshold])\n\n lineSegment = p2 - p1\n lineLength = np.linalg.norm(lineSegment)\n\n cropped, polyData = cropToPlane(polyData, p1, lineSegment/lineLength, [-0.03, lineLength + 0.03])\n\n updatePolyData(cropped, 'drill cluster', parent=getDebugFolder(), visible=False)\n\n\n drillPoints = cropped\n normal = lineSegment/lineLength\n\n centroids = computeCentroids(drillPoints, axis=normal)\n\n centroidsPolyData = vtkNumpy.getVtkPolyDataFromNumpyPoints(centroids)\n d = DebugData()\n updatePolyData(centroidsPolyData, 'cluster centroids', parent=getDebugFolder(), visible=False)\n\n drillToTopPoint = np.array([-0.002904, -0.010029, 0.153182])\n\n zaxis = normal\n yaxis = centroids[0] - centroids[-1]\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis = np.cross(zaxis, xaxis)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PreMultiply()\n t.Translate(-drillToTopPoint)\n t.PostMultiply()\n t.Translate(p2)\n\n drillMesh = getDrillMesh()\n\n aff = showPolyData(drillMesh, 'drill', cls=FrameAffordanceItem, visible=True)\n aff.actor.SetUserTransform(t)\n showFrame(t, 'drill frame', parent=aff, visible=False).addToView(app.getDRCView())\n\n params = getDrillAffordanceParams(np.array(t.GetPosition()), xaxis, yaxis, zaxis)\n aff.setAffordanceParams(params)\n aff.updateParamsFromActorTransform()\n aff.addToView(app.getDRCView())", "metadata": "root.segmentDrillInHand", "header": "['module', '___EOS___']", "index": 3115 }, { "content": "def addDrillAffordance():\n\n drillMesh = getDrillMesh()\n\n aff = showPolyData(drillMesh, 'drill', cls=FrameAffordanceItem, visible=True)\n t = vtk.vtkTransform()\n t.PostMultiply()\n aff.actor.SetUserTransform(t)\n showFrame(t, 'drill frame', parent=aff, visible=False).addToView(app.getDRCView())\n\n params = getDrillAffordanceParams(np.array(t.GetPosition()), [1,0,0], [0,1,0], [0,0,1])\n aff.setAffordanceParams(params)\n aff.updateParamsFromActorTransform()\n aff.addToView(app.getDRCView())\n return aff", "metadata": "root.addDrillAffordance", "header": "['module', '___EOS___']", "index": 3170 }, { "content": "def getLinkFrame(linkName):\n robotStateModel = om.findObjectByName('robot state model')\n robotStateModel = robotStateModel or getVisibleRobotModel()\n assert robotStateModel\n t = vtk.vtkTransform()\n robotStateModel.model.getLinkToWorld(linkName, t)\n return t", "metadata": "root.getLinkFrame", "header": "['module', '___EOS___']", "index": 3187 }, { "content": "def getDrillInHandOffset(zRotation=0.0, zTranslation=0.0, xTranslation=0.0, yTranslation=0.0,flip=False):\n\n drillOffset = vtk.vtkTransform()\n drillOffset.PostMultiply()\n if flip:\n drillOffset.RotateY(180)\n drillOffset.RotateZ(zRotation)\n drillOffset.RotateY(-90)\n #drillOffset.Translate(0, 0.09, zTranslation - 0.015)\n #drillOffset.Translate(zTranslation - 0.015, 0.035 + xTranslation, 0.0)\n drillOffset.Translate(zTranslation, xTranslation, 0.0 + yTranslation)\n return drillOffset", "metadata": "root.getDrillInHandOffset", "header": "['module', '___EOS___']", "index": 3196 }, { "content": "def moveDrillToHand(drillOffset, hand='right'):\n drill = om.findObjectByName('drill')\n if not drill:\n drill = addDrillAffordance()\n\n assert hand in ('right', 'left')\n drillTransform = drill.actor.GetUserTransform()\n rightBaseLink = getLinkFrame('%s_hand_face' % hand[0])\n drillTransform.PostMultiply()\n drillTransform.Identity()\n drillTransform.Concatenate(drillOffset)\n drillTransform.Concatenate(rightBaseLink)\n drill._renderAllViews()", "metadata": "root.moveDrillToHand", "header": "['module', '___EOS___']", "index": 3210 }, { "content": "class PointPicker(TimerCallback):\n\n\n\n\n\n\n\n\n", "metadata": "root.PointPicker", "header": "['module', '___EOS___']", "index": 3224 }, { "content": " def __init__(self, numberOfPoints=3):\n TimerCallback.__init__(self)\n self.targetFps = 30\n self.enabled = False\n self.numberOfPoints = numberOfPoints\n self.annotationObj = None\n self.drawLines = True\n self.clear()", "metadata": "root.PointPicker.__init__", "header": "['class', 'PointPicker', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3226 }, { "content": " def clear(self):\n self.points = [None for i in xrange(self.numberOfPoints)]\n self.hoverPos = None\n self.annotationFunc = None\n self.lastMovePos = [0, 0]", "metadata": "root.PointPicker.clear", "header": "['class', 'PointPicker', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3235 }, { "content": " def onMouseMove(self, displayPoint, modifiers=None):\n self.lastMovePos = displayPoint", "metadata": "root.PointPicker.onMouseMove", "header": "['class', 'PointPicker', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3241 }, { "content": " def onMousePress(self, displayPoint, modifiers=None):\n\n #print 'mouse press:', modifiers\n #if not modifiers:\n # return\n\n for i in xrange(self.numberOfPoints):\n if self.points[i] is None:\n self.points[i] = self.hoverPos\n break\n\n if self.points[-1] is not None:\n self.finish()", "metadata": "root.PointPicker.onMousePress", "header": "['class', 'PointPicker', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3244 }, { "content": " def finish(self):\n\n self.enabled = False\n om.removeFromObjectModel(self.annotationObj)\n\n points = [p.copy() for p in self.points]\n if self.annotationFunc is not None:\n self.annotationFunc(*points)\n\n removeViewPicker(self)", "metadata": "root.PointPicker.finish", "header": "['class', 'PointPicker', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3258 }, { "content": " def handleRelease(self, displayPoint):\n pass", "metadata": "root.PointPicker.handleRelease", "header": "['class', 'PointPicker', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3269 }, { "content": " def draw(self):\n\n d = DebugData()\n\n points = [p if p is not None else self.hoverPos for p in self.points]\n\n # draw points\n for p in points:\n if p is not None:\n d.addSphere(p, radius=0.01)\n\n if self.drawLines:\n # draw lines\n for a, b in zip(points, points[1:]):\n if b is not None:\n d.addLine(a, b)\n\n # connect end points\n if points[-1] is not None:\n d.addLine(points[0], points[-1])\n\n\n self.annotationObj = updatePolyData(d.getPolyData(), 'annotation', parent=getDebugFolder())\n self.annotationObj.setProperty('Color', QtGui.QColor(0, 255, 0))\n self.annotationObj.actor.SetPickable(False)", "metadata": "root.PointPicker.draw", "header": "['class', 'PointPicker', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3272 }, { "content": " def tick(self):\n\n if not self.enabled:\n return\n\n if not om.findObjectByName('pointcloud snapshot'):\n self.annotationFunc = None\n self.finish()\n return\n\n self.hoverPos = pickPoint(self.lastMovePos, getSegmentationView(), obj='pointcloud snapshot')\n self.draw()", "metadata": "root.PointPicker.tick", "header": "['class', 'PointPicker', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3299 }, { "content": "class LineDraw(TimerCallback):\n\n\n\n\n\n\n\n", "metadata": "root.LineDraw", "header": "['module', '___EOS___']", "index": 3313 }, { "content": " def __init__(self, view):\n TimerCallback.__init__(self)\n self.targetFps = 30\n self.enabled = False\n self.view = view\n self.renderer = view.renderer()\n self.line = vtk.vtkLeaderActor2D()\n self.line.SetArrowPlacementToNone()\n self.line.GetPositionCoordinate().SetCoordinateSystemToViewport()\n self.line.GetPosition2Coordinate().SetCoordinateSystemToViewport()\n self.line.GetProperty().SetLineWidth(4)\n self.line.SetPosition(0,0)\n self.line.SetPosition2(0,0)\n self.clear()", "metadata": "root.LineDraw.__init__", "header": "['class', 'LineDraw', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3315 }, { "content": " def clear(self):\n self.p1 = None\n self.p2 = None\n self.annotationFunc = None\n self.lastMovePos = [0, 0]\n self.renderer.RemoveActor2D(self.line)", "metadata": "root.LineDraw.clear", "header": "['class', 'LineDraw', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3330 }, { "content": " def onMouseMove(self, displayPoint, modifiers=None):\n self.lastMovePos = displayPoint", "metadata": "root.LineDraw.onMouseMove", "header": "['class', 'LineDraw', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3337 }, { "content": " def onMousePress(self, displayPoint, modifiers=None):\n\n if self.p1 is None:\n self.p1 = list(self.lastMovePos)\n if self.p1 is not None:\n self.renderer.AddActor2D(self.line)\n else:\n self.p2 = self.lastMovePos\n self.finish()", "metadata": "root.LineDraw.onMousePress", "header": "['class', 'LineDraw', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3340 }, { "content": " def finish(self):\n\n self.enabled = False\n self.renderer.RemoveActor2D(self.line)\n if self.annotationFunc is not None:\n self.annotationFunc(self.p1, self.p2)", "metadata": "root.LineDraw.finish", "header": "['class', 'LineDraw', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3350 }, { "content": " def handleRelease(self, displayPoint):\n pass", "metadata": "root.LineDraw.handleRelease", "header": "['class', 'LineDraw', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3358 }, { "content": " def tick(self):\n\n if not self.enabled:\n return\n\n if self.p1:\n self.line.SetPosition(self.p1)\n self.line.SetPosition2(self.lastMovePos)\n self.view.render()", "metadata": "root.LineDraw.tick", "header": "['class', 'LineDraw', '(', 'TimerCallback', ')', ':', '___EOS___']", "index": 3361 }, { "content": "def addViewPicker(picker):\n global viewPickers\n viewPickers.append(picker)", "metadata": "root.addViewPicker", "header": "['module', '___EOS___']", "index": 3373 }, { "content": "def removeViewPicker(picker):\n global viewPickers\n viewPickers.remove(picker)", "metadata": "root.removeViewPicker", "header": "['module', '___EOS___']", "index": 3377 }, { "content": "def distanceToLine(x0, x1, x2):\n numerator = np.sqrt(np.sum(np.cross((x0 - x1), (x0-x2))**2))\n denom = np.linalg.norm(x2-x1)\n return numerator / denom", "metadata": "root.distanceToLine", "header": "['module', '___EOS___']", "index": 3382 }, { "content": "def labelDistanceToLine(polyData, linePoint1, linePoint2, resultArrayName='distance_to_line'):\n\n x0 = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n x1 = np.array(linePoint1)\n x2 = np.array(linePoint2)\n\n numerator = np.sqrt(np.sum(np.cross((x0 - x1), (x0-x2))**2, axis=1))\n denom = np.linalg.norm(x2-x1)\n\n dists = numerator / denom\n\n polyData = shallowCopy(polyData)\n vtkNumpy.addNumpyToVtk(polyData, dists, resultArrayName)\n return polyData", "metadata": "root.labelDistanceToLine", "header": "['module', '___EOS___']", "index": 3388 }, { "content": "def labelDistanceToPoint(polyData, point, resultArrayName='distance_to_point'):\n assert polyData.GetNumberOfPoints()\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n points = points - point\n dists = np.sqrt(np.sum(points**2, axis=1))\n polyData = shallowCopy(polyData)\n vtkNumpy.addNumpyToVtk(polyData, dists, resultArrayName)\n return polyData", "metadata": "root.labelDistanceToPoint", "header": "['module', '___EOS___']", "index": 3404 }, { "content": "def getPlaneEquationFromPolyData(polyData, expectedNormal):\n\n _, origin, normal = applyPlaneFit(polyData, expectedNormal=expectedNormal, returnOrigin=True)\n return origin, normal, np.hstack((normal, [np.dot(origin, normal)]))", "metadata": "root.getPlaneEquationFromPolyData", "header": "['module', '___EOS___']", "index": 3414 }, { "content": "def computeEdge(polyData, edgeAxis, perpAxis, binWidth=0.03):\n\n polyData = labelPointDistanceAlongAxis(polyData, edgeAxis, resultArrayName='dist_along_edge')\n polyData = labelPointDistanceAlongAxis(polyData, perpAxis, resultArrayName='dist_perp_to_edge')\n\n\n polyData, bins = binByScalar(polyData, 'dist_along_edge', binWidth)\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n binLabels = vtkNumpy.getNumpyFromVtk(polyData, 'bin_labels')\n distToEdge = vtkNumpy.getNumpyFromVtk(polyData, 'dist_perp_to_edge')\n\n numberOfBins = len(bins) - 1\n edgePoints = []\n for i in xrange(numberOfBins):\n binPoints = points[binLabels == i]\n binDists = distToEdge[binLabels == i]\n if len(binDists):\n edgePoints.append(binPoints[binDists.argmax()])\n\n return np.array(edgePoints)", "metadata": "root.computeEdge", "header": "['module', '___EOS___']", "index": 3422 }, { "content": "def computeCentroids(polyData, axis, binWidth=0.025):\n\n polyData = labelPointDistanceAlongAxis(polyData, axis, resultArrayName='dist_along_axis')\n\n polyData, bins = binByScalar(polyData, 'dist_along_axis', binWidth)\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n binLabels = vtkNumpy.getNumpyFromVtk(polyData, 'bin_labels')\n\n numberOfBins = len(bins) - 1\n centroids = []\n for i in xrange(numberOfBins):\n binPoints = points[binLabels == i]\n\n if len(binPoints):\n centroids.append(np.average(binPoints, axis=0))\n\n return np.array(centroids)", "metadata": "root.computeCentroids", "header": "['module', '___EOS___']", "index": 3444 }, { "content": "def computePointCountsAlongAxis(polyData, axis, binWidth=0.025):\n\n polyData = labelPointDistanceAlongAxis(polyData, axis, resultArrayName='dist_along_axis')\n\n polyData, bins = binByScalar(polyData, 'dist_along_axis', binWidth)\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n binLabels = vtkNumpy.getNumpyFromVtk(polyData, 'bin_labels')\n\n numberOfBins = len(bins) - 1\n binCount = []\n for i in xrange(numberOfBins):\n binPoints = points[binLabels == i]\n binCount.append(len(binPoints))\n\n return np.array(binCount)", "metadata": "root.computePointCountsAlongAxis", "header": "['module', '___EOS___']", "index": 3463 }, { "content": "def binByScalar(lidarData, scalarArrayName, binWidth, binLabelsArrayName='bin_labels'):\n '''\n Gets the array with name scalarArrayName from lidarData.\n Computes bins by dividing the scalar array into bins of size binWidth.\n Adds a new label array to the lidar points identifying which bin the point belongs to,\n where the first bin is labeled with 0.\n Returns the new, labeled lidar data and the bins.\n The bins are an array where each value represents a bin edge.\n '''\n\n scalars = vtkNumpy.getNumpyFromVtk(lidarData, scalarArrayName)\n bins = np.arange(scalars.min(), scalars.max()+binWidth, binWidth)\n binLabels = np.digitize(scalars, bins) - 1\n assert(len(binLabels) == len(scalars))\n newData = shallowCopy(lidarData)\n vtkNumpy.addNumpyToVtk(newData, binLabels, binLabelsArrayName)\n return newData, bins", "metadata": "root.binByScalar", "header": "['module', '___EOS___']", "index": 3482 }, { "content": "def showObbs(polyData):\n\n labelsArrayName = 'cluster_labels'\n assert polyData.GetPointData().GetArray(labelsArrayName)\n\n f = vtk.vtkAnnotateOBBs()\n f.SetInputArrayToProcess(0,0,0, vtk.vtkDataObject.FIELD_ASSOCIATION_POINTS, labelsArrayName)\n f.SetInput(polyData)\n f.Update()\n showPolyData(f.GetOutput(), 'bboxes')", "metadata": "root.showObbs", "header": "['module', '___EOS___']", "index": 3501 }, { "content": "def getOrientedBoundingBox(polyData):\n '''\n returns origin, edges, and outline wireframe\n '''\n nPoints = polyData.GetNumberOfPoints()\n assert nPoints\n polyData = shallowCopy(polyData)\n\n labelsArrayName = 'bbox_labels'\n labels = np.ones(nPoints)\n vtkNumpy.addNumpyToVtk(polyData, labels, labelsArrayName)\n\n f = vtk.vtkAnnotateOBBs()\n f.SetInputArrayToProcess(0,0,0, vtk.vtkDataObject.FIELD_ASSOCIATION_POINTS, labelsArrayName)\n f.SetInput(polyData)\n f.Update()\n\n assert f.GetNumberOfBoundingBoxes() == 1\n\n origin = np.zeros(3)\n edges = [np.zeros(3) for i in xrange(3)]\n\n f.GetBoundingBoxOrigin(0, origin)\n for i in xrange(3):\n f.GetBoundingBoxEdge(0, i, edges[i])\n\n return origin, edges, shallowCopy(f.GetOutput())", "metadata": "root.getOrientedBoundingBox", "header": "['module', '___EOS___']", "index": 3513 }, { "content": "def segmentBlockByAnnotation(blockDimensions, p1, p2, p3):\n\n segmentationObj = om.findObjectByName('pointcloud snapshot')\n segmentationObj.mapper.ScalarVisibilityOff()\n segmentationObj.setProperty('Point Size', 2)\n segmentationObj.setProperty('Alpha', 0.8)\n\n # constraint z to lie in plane\n #p1[2] = p2[2] = p3[2] = max(p1[2], p2[2], p3[2])\n\n zedge = p2 - p1\n zaxis = zedge / np.linalg.norm(zedge)\n\n #xwidth = distanceToLine(p3, p1, p2)\n\n # expected dimensions\n xwidth, ywidth = blockDimensions\n\n zwidth = np.linalg.norm(zedge)\n\n yaxis = np.cross(p2 - p1, p3 - p1)\n yaxis = yaxis / np.linalg.norm(yaxis)\n\n xaxis = np.cross(yaxis, zaxis)\n\n # reorient axes\n viewPlaneNormal = getSegmentationView().camera().GetViewPlaneNormal()\n if np.dot(yaxis, viewPlaneNormal) < 0:\n yaxis *= -1\n\n if np.dot(xaxis, p3 - p1) < 0:\n xaxis *= -1\n\n # make right handed\n zaxis = np.cross(xaxis, yaxis)\n\n origin = ((p1 + p2) / 2.0) + xaxis*xwidth/2.0 + yaxis*ywidth/2.0\n\n d = DebugData()\n d.addSphere(origin, radius=0.01)\n d.addLine(origin - xaxis*xwidth/2.0, origin + xaxis*xwidth/2.0)\n d.addLine(origin - yaxis*ywidth/2.0, origin + yaxis*ywidth/2.0)\n d.addLine(origin - zaxis*zwidth/2.0, origin + zaxis*zwidth/2.0)\n obj = updatePolyData(d.getPolyData(), 'block axes')\n obj.setProperty('Color', QtGui.QColor(255, 255, 0))\n obj.setProperty('Visible', False)\n om.findObjectByName('annotation').setProperty('Visible', False)\n\n cube = vtk.vtkCubeSource()\n cube.SetXLength(xwidth)\n cube.SetYLength(ywidth)\n cube.SetZLength(zwidth)\n cube.Update()\n cube = shallowCopy(cube.GetOutput())\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n obj = updatePolyData(cube, 'block affordance', cls=BlockAffordanceItem, parent='affordances')\n obj.actor.SetUserTransform(t)\n\n obj.addToView(app.getDRCView())\n\n params = dict(origin=origin, xwidth=xwidth, ywidth=ywidth, zwidth=zwidth, xaxis=xaxis, yaxis=yaxis, zaxis=zaxis)\n obj.setAffordanceParams(params)\n obj.updateParamsFromActorTransform()", "metadata": "root.segmentBlockByAnnotation", "header": "['module', '___EOS___']", "index": 3542 }, { "content": "def getBoardCorners(params):\n axes = [np.array(params[axis]) for axis in ['xaxis', 'yaxis', 'zaxis']]\n widths = [np.array(params[axis])/2.0 for axis in ['xwidth', 'ywidth', 'zwidth']]\n edges = [axes[i] * widths[i] for i in xrange(3)]\n origin = np.array(params['origin'])\n return [\n origin + edges[0] + edges[1] + edges[2],\n origin - edges[0] + edges[1] + edges[2],\n origin - edges[0] - edges[1] + edges[2],\n origin + edges[0] - edges[1] + edges[2],\n origin + edges[0] + edges[1] - edges[2],\n origin - edges[0] + edges[1] - edges[2],\n origin - edges[0] - edges[1] - edges[2],\n origin + edges[0] - edges[1] - edges[2],\n ]", "metadata": "root.getBoardCorners", "header": "['module', '___EOS___']", "index": 3615 }, { "content": "def getPointDistances(target, points):\n return np.array([np.linalg.norm(target - p) for p in points])", "metadata": "root.getPointDistances", "header": "['module', '___EOS___']", "index": 3631 }, { "content": "def computeClosestCorner(aff, referenceFrame):\n corners = getBoardCorners(aff.params)\n dists = getPointDistances(np.array(referenceFrame.GetPosition()), corners)\n return corners[dists.argmin()]", "metadata": "root.computeClosestCorner", "header": "['module', '___EOS___']", "index": 3635 }, { "content": "def computeGroundFrame(aff, referenceFrame):\n\n refAxis = [0.0, -1.0, 0.0]\n referenceFrame.TransformVector(refAxis, refAxis)\n\n refAxis = np.array(refAxis)\n\n axes = [np.array(aff.params[axis]) for axis in ['xaxis', 'yaxis', 'zaxis']]\n axisProjections = np.array([np.abs(np.dot(axis, refAxis)) for axis in axes])\n boardAxis = axes[axisProjections.argmax()]\n if np.dot(boardAxis, refAxis) < 0:\n boardAxis = -boardAxis\n\n xaxis = boardAxis\n zaxis = np.array([0.0, 0.0, 1.0])\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n closestCorner = computeClosestCorner(aff, referenceFrame)\n groundFrame = getTransformFromAxes(xaxis, yaxis, zaxis)\n groundFrame.PostMultiply()\n groundFrame.Translate(closestCorner[0], closestCorner[1], 0.0)\n return groundFrame", "metadata": "root.computeGroundFrame", "header": "['module', '___EOS___']", "index": 3641 }, { "content": "def computeCornerFrame(aff, referenceFrame):\n\n refAxis = [0.0, -1.0, 0.0]\n referenceFrame.TransformVector(refAxis, refAxis)\n\n refAxis = np.array(refAxis)\n\n axes = [np.array(aff.params[axis]) for axis in ['xaxis', 'yaxis', 'zaxis']]\n edgeLengths = [edgeLength for edgeLength in ['xwidth', 'ywidth', 'zwidth']]\n\n axisProjections = np.array([np.abs(np.dot(axis, refAxis)) for axis in axes])\n boardAxis = axes[axisProjections.argmax()]\n if np.dot(boardAxis, refAxis) < 0:\n boardAxis = -boardAxis\n\n longAxis = axes[np.argmax(edgeLengths)]\n\n xaxis = boardAxis\n yaxis = axes[2]\n zaxis = np.cross(xaxis, yaxis)\n\n closestCorner = computeClosestCorner(aff, referenceFrame)\n cornerFrame = getTransformFromAxes(xaxis, yaxis, zaxis)\n cornerFrame.PostMultiply()\n cornerFrame.Translate(closestCorner)\n return cornerFrame", "metadata": "root.computeCornerFrame", "header": "['module', '___EOS___']", "index": 3666 }, { "content": "def publishTriad(transform, collectionId=1234):\n\n o = lcmvs.obj_t()\n\n xyz = transform.GetPosition()\n rpy = transformUtils.rollPitchYawFromTransform(transform)\n\n o.roll, o.pitch, o.yaw = rpy\n o.x, o.y, o.z = xyz\n o.id = 1\n\n m = lcmvs.obj_collection_t()\n m.id = collectionId\n m.name = 'stance_triads'\n m.type = lcmvs.obj_collection_t.AXIS3D\n m.nobjs = 1\n m.reset = False\n m.objs = [o]\n\n lcmUtils.publish('OBJ_COLLECTION', m)", "metadata": "root.publishTriad", "header": "['module', '___EOS___']", "index": 3694 }, { "content": "def createBlockAffordance(origin, xaxis, yaxis, zaxis, xwidth, ywidth, zwidth, name, parent='affordances'):\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n obj = BoxAffordanceItem(name, view=app.getCurrentRenderView())\n obj.setProperty('Dimensions', [float(v) for v in [xwidth, ywidth, zwidth]])\n obj.actor.SetUserTransform(t)\n\n om.addToObjectModel(obj, parentObj=om.getOrCreateContainer(parent))\n frameObj = vis.showFrame(t, name + ' frame', scale=0.2, visible=False, parent=obj)\n\n obj.addToView(app.getDRCView())\n frameObj.addToView(app.getDRCView())\n\n affordanceManager.registerAffordance(obj)\n return obj", "metadata": "root.createBlockAffordance", "header": "['module', '___EOS___']", "index": 3716 }, { "content": "def segmentBlockByTopPlane(polyData, blockDimensions, expectedNormal, expectedXAxis, edgeSign=1, name='block affordance'):\n\n polyData, planeOrigin, normal = applyPlaneFit(polyData, distanceThreshold=0.05, expectedNormal=expectedNormal, returnOrigin=True)\n\n _, lineDirection, _ = applyLineFit(polyData)\n\n zaxis = lineDirection\n yaxis = normal\n xaxis = np.cross(yaxis, zaxis)\n\n if np.dot(xaxis, expectedXAxis) < 0:\n xaxis *= -1\n\n # make right handed\n zaxis = np.cross(xaxis, yaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis /= np.linalg.norm(zaxis)\n\n expectedXAxis = np.array(xaxis)\n\n edgePoints = computeEdge(polyData, zaxis, xaxis*edgeSign)\n edgePoints = vtkNumpy.getVtkPolyDataFromNumpyPoints(edgePoints)\n\n d = DebugData()\n obj = updatePolyData(edgePoints, 'edge points', parent=getDebugFolder(), visible=False)\n\n linePoint, lineDirection, _ = applyLineFit(edgePoints)\n zaxis = lineDirection\n xaxis = np.cross(yaxis, zaxis)\n\n\n if np.dot(xaxis, expectedXAxis) < 0:\n xaxis *= -1\n\n # make right handed\n zaxis = np.cross(xaxis, yaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis /= np.linalg.norm(zaxis)\n\n polyData = labelPointDistanceAlongAxis(polyData, xaxis, resultArrayName='dist_along_line')\n pts = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n\n dists = np.dot(pts-linePoint, zaxis)\n\n p1 = linePoint + zaxis*np.min(dists)\n p2 = linePoint + zaxis*np.max(dists)\n\n p1 = projectPointToPlane(p1, planeOrigin, normal)\n p2 = projectPointToPlane(p2, planeOrigin, normal)\n\n xwidth, ywidth = blockDimensions\n zwidth = np.linalg.norm(p2 - p1)\n\n origin = p1 - edgeSign*xaxis*xwidth/2.0 - yaxis*ywidth/2.0 + zaxis*zwidth/2.0\n\n d = DebugData()\n\n #d.addSphere(linePoint, radius=0.02)\n #d.addLine(linePoint, linePoint + yaxis*ywidth)\n #d.addLine(linePoint, linePoint + xaxis*xwidth)\n #d.addLine(linePoint, linePoint + zaxis*zwidth)\n\n\n d.addSphere(p1, radius=0.01)\n d.addSphere(p2, radius=0.01)\n d.addLine(p1, p2)\n\n d.addSphere(origin, radius=0.01)\n #d.addLine(origin - xaxis*xwidth/2.0, origin + xaxis*xwidth/2.0)\n #d.addLine(origin - yaxis*ywidth/2.0, origin + yaxis*ywidth/2.0)\n #d.addLine(origin - zaxis*zwidth/2.0, origin + zaxis*zwidth/2.0)\n\n d.addLine(origin, origin + xaxis*xwidth/2.0)\n d.addLine(origin, origin + yaxis*ywidth/2.0)\n d.addLine(origin, origin + zaxis*zwidth/2.0)\n\n\n #obj = updatePolyData(d.getPolyData(), 'block axes')\n #obj.setProperty('Color', QtGui.QColor(255, 255, 0))\n #obj.setProperty('Visible', False)\n\n obj = createBlockAffordance(origin, xaxis, yaxis, zaxis, xwidth, ywidth, zwidth, name)\n obj.setProperty('Color', [222/255.0, 184/255.0, 135/255.0])\n\n computeDebrisGraspSeed(obj)\n t = computeDebrisStanceFrame(obj)\n if t:\n showFrame(t, 'debris stance frame', parent=obj)\n obj.publishCallback = functools.partial(publishDebrisStanceFrame, obj)\n\n return obj", "metadata": "root.segmentBlockByTopPlane", "header": "['module', '___EOS___']", "index": 3736 }, { "content": "def computeDebrisGraspSeed(aff):\n\n debrisReferenceFrame = om.findObjectByName('debris reference frame')\n if debrisReferenceFrame:\n\n debrisReferenceFrame = debrisReferenceFrame.transform\n affCornerFrame = computeCornerFrame(aff, debrisReferenceFrame)\n showFrame(affCornerFrame, 'board corner frame', parent=aff, visible=False)", "metadata": "root.computeDebrisGraspSeed", "header": "['module', '___EOS___']", "index": 3831 }, { "content": "def computeDebrisStanceFrame(aff):\n\n debrisReferenceFrame = om.findObjectByName('debris reference frame')\n debrisWallEdge = om.findObjectByName('debris plane edge')\n\n if debrisReferenceFrame and debrisWallEdge:\n\n debrisReferenceFrame = debrisReferenceFrame.transform\n\n affGroundFrame = computeGroundFrame(aff, debrisReferenceFrame)\n\n updateFrame(affGroundFrame, 'board ground frame', parent=getDebugFolder(), visible=False)\n\n affWallEdge = computeGroundFrame(aff, debrisReferenceFrame)\n\n framePos = np.array(affGroundFrame.GetPosition())\n p1, p2 = debrisWallEdge.points\n edgeAxis = p2 - p1\n edgeAxis /= np.linalg.norm(edgeAxis)\n projectedPos = p1 + edgeAxis * np.dot(framePos - p1, edgeAxis)\n\n affWallFrame = vtk.vtkTransform()\n affWallFrame.PostMultiply()\n\n useWallFrameForRotation = True\n\n if useWallFrameForRotation:\n affWallFrame.SetMatrix(debrisReferenceFrame.GetMatrix())\n affWallFrame.Translate(projectedPos - np.array(debrisReferenceFrame.GetPosition()))\n\n stanceWidth = 0.20\n stanceOffsetX = -0.35\n stanceOffsetY = 0.45\n stanceRotation = 0.0\n\n else:\n affWallFrame.SetMatrix(affGroundFrame.GetMatrix())\n affWallFrame.Translate(projectedPos - framePos)\n\n stanceWidth = 0.20\n stanceOffsetX = -0.35\n stanceOffsetY = -0.45\n stanceRotation = math.pi/2.0\n\n stanceFrame, _, _ = getFootFramesFromReferenceFrame(affWallFrame, stanceWidth, math.degrees(stanceRotation), [stanceOffsetX, stanceOffsetY, 0.0])\n\n return stanceFrame", "metadata": "root.computeDebrisStanceFrame", "header": "['module', '___EOS___']", "index": 3841 }, { "content": "def publishDebrisStanceFrame(aff):\n frame = computeDebrisStanceFrame(aff)\n publishTriad(frame)", "metadata": "root.publishDebrisStanceFrame", "header": "['module', '___EOS___']", "index": 3890 }, { "content": "def segmentBlockByPlanes(blockDimensions):\n\n planes = om.findObjectByName('selected planes').children()[:2]\n\n viewPlaneNormal = getSegmentationView().camera().GetViewPlaneNormal()\n origin1, normal1, plane1 = getPlaneEquationFromPolyData(planes[0].polyData, expectedNormal=viewPlaneNormal)\n origin2, normal2, plane2 = getPlaneEquationFromPolyData(planes[1].polyData, expectedNormal=viewPlaneNormal)\n\n xaxis = normal2\n yaxis = normal1\n zaxis = np.cross(xaxis, yaxis)\n xaxis = np.cross(yaxis, zaxis)\n\n pts1 = vtkNumpy.getNumpyFromVtk(planes[0].polyData, 'Points')\n pts2 = vtkNumpy.getNumpyFromVtk(planes[1].polyData, 'Points')\n\n linePoint = np.zeros(3)\n centroid2 = np.sum(pts2, axis=0)/len(pts2)\n vtk.vtkPlane.ProjectPoint(centroid2, origin1, normal1, linePoint)\n\n dists = np.dot(pts1-linePoint, zaxis)\n\n p1 = linePoint + zaxis*np.min(dists)\n p2 = linePoint + zaxis*np.max(dists)\n\n xwidth, ywidth = blockDimensions\n zwidth = np.linalg.norm(p2 - p1)\n\n origin = p1 + xaxis*xwidth/2.0 + yaxis*ywidth/2.0 + zaxis*zwidth/2.0\n\n d = DebugData()\n\n d.addSphere(linePoint, radius=0.02)\n d.addSphere(p1, radius=0.01)\n d.addSphere(p2, radius=0.01)\n d.addLine(p1, p2)\n\n d.addSphere(origin, radius=0.01)\n d.addLine(origin - xaxis*xwidth/2.0, origin + xaxis*xwidth/2.0)\n d.addLine(origin - yaxis*ywidth/2.0, origin + yaxis*ywidth/2.0)\n d.addLine(origin - zaxis*zwidth/2.0, origin + zaxis*zwidth/2.0)\n obj = updatePolyData(d.getPolyData(), 'block axes')\n obj.setProperty('Color', QtGui.QColor(255, 255, 0))\n obj.setProperty('Visible', False)\n\n cube = vtk.vtkCubeSource()\n cube.SetXLength(xwidth)\n cube.SetYLength(ywidth)\n cube.SetZLength(zwidth)\n cube.Update()\n cube = shallowCopy(cube.GetOutput())\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n obj = updatePolyData(cube, 'block affordance', cls=BlockAffordanceItem, parent='affordances')\n obj.actor.SetUserTransform(t)\n obj.addToView(app.getDRCView())\n\n params = dict(origin=origin, xwidth=xwidth, ywidth=ywidth, zwidth=zwidth, xaxis=xaxis, yaxis=yaxis, zaxis=zaxis)\n obj.setAffordanceParams(params)\n obj.updateParamsFromActorTransform()", "metadata": "root.segmentBlockByPlanes", "header": "['module', '___EOS___']", "index": 3895 }, { "content": "def estimatePointerTip(robotModel, polyData):\n '''\n Given a robot model, uses forward kinematics to determine a pointer tip\n search region, then does a ransac line fit in the search region to find\n points on the pointer, and selects the maximum point along the line fit\n as the pointer tip. Returns the pointer tip xyz on success and returns\n None on failure.\n '''\n palmFrame = robotModel.getLinkFrame('r_hand_force_torque')\n p1 = [0.0, 0.14, -0.06]\n p2 = [0.0, 0.24, -0.06]\n\n palmFrame.TransformPoint(p1, p1)\n palmFrame.TransformPoint(p2, p2)\n\n p1 = np.array(p1)\n p2 = np.array(p2)\n\n d = DebugData()\n d.addSphere(p1, radius=0.005)\n d.addSphere(p2, radius=0.005)\n d.addLine(p1, p2)\n vis.updatePolyData(d.getPolyData(), 'pointer line', color=[1,0,0], parent=getDebugFolder(), visible=False)\n\n polyData = cropToLineSegment(polyData, p1, p2)\n if not polyData.GetNumberOfPoints():\n #print 'pointer search region is empty'\n return None\n\n vis.updatePolyData(polyData, 'cropped to pointer line', parent=getDebugFolder(), visible=False)\n\n polyData = labelDistanceToLine(polyData, p1, p2)\n\n polyData = thresholdPoints(polyData, 'distance_to_line', [0.0, 0.07])\n\n if polyData.GetNumberOfPoints() < 2:\n #print 'pointer search region is empty'\n return None\n\n updatePolyData(polyData, 'distance to pointer line', colorByName='distance_to_line', parent=getDebugFolder(), visible=False)\n\n ransacDistanceThreshold = 0.0075\n lineOrigin, lineDirection, polyData = applyLineFit(polyData, distanceThreshold=ransacDistanceThreshold)\n updatePolyData(polyData, 'line fit ransac', colorByName='ransac_labels', parent=getDebugFolder(), visible=False)\n\n\n lineDirection = np.array(lineDirection)\n lineDirection /= np.linalg.norm(lineDirection)\n\n if np.dot(lineDirection, (p2 - p1)) < 0:\n lineDirection *= -1\n\n polyData = thresholdPoints(polyData, 'ransac_labels', [1.0, 1.0])\n\n if polyData.GetNumberOfPoints() < 2:\n #print 'pointer ransac line fit failed to find inliers'\n return None\n\n obj = updatePolyData(polyData, 'line fit points', colorByName='dist_along_line', parent=getDebugFolder(), visible=True)\n obj.setProperty('Point Size', 5)\n\n pts = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n\n dists = np.dot(pts-lineOrigin, lineDirection)\n\n p1 = lineOrigin + lineDirection*np.min(dists)\n p2 = lineOrigin + lineDirection*np.max(dists)\n\n d = DebugData()\n #d.addSphere(p1, radius=0.005)\n d.addSphere(p2, radius=0.005)\n d.addLine(p1, p2)\n vis.updatePolyData(d.getPolyData(), 'fit pointer line', color=[0,1,0], parent=getDebugFolder(), visible=True)\n\n return p2", "metadata": "root.estimatePointerTip", "header": "['module', '___EOS___']", "index": 3960 }, { "content": "def startBoundedPlaneSegmentation():\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.start()\n picker.annotationFunc = functools.partial(segmentBoundedPlaneByAnnotation)", "metadata": "root.startBoundedPlaneSegmentation", "header": "['module', '___EOS___']", "index": 4037 }, { "content": "def startValveSegmentationByWallPlane(expectedValveRadius):\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.start()\n picker.annotationFunc = functools.partial(segmentValveByWallPlane, expectedValveRadius)", "metadata": "root.startValveSegmentationByWallPlane", "header": "['module', '___EOS___']", "index": 4046 }, { "content": "def startValveSegmentationManual(expectedValveRadius):\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentValve, expectedValveRadius)", "metadata": "root.startValveSegmentationManual", "header": "['module', '___EOS___']", "index": 4055 }, { "content": "def startRefitWall():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.start()\n picker.annotationFunc = refitWall", "metadata": "root.startRefitWall", "header": "['module', '___EOS___']", "index": 4065 }, { "content": "def startWyeSegmentation():\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentWye)", "metadata": "root.startWyeSegmentation", "header": "['module', '___EOS___']", "index": 4075 }, { "content": "def startDoorHandleSegmentation(otdfType):\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentDoorHandle, otdfType)", "metadata": "root.startDoorHandleSegmentation", "header": "['module', '___EOS___']", "index": 4085 }, { "content": "def startTrussSegmentation():\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = True\n picker.start()\n picker.annotationFunc = functools.partial(segmentTruss)", "metadata": "root.startTrussSegmentation", "header": "['module', '___EOS___']", "index": 4095 }, { "content": "def startHoseNozzleSegmentation():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentHoseNozzle)", "metadata": "root.startHoseNozzleSegmentation", "header": "['module', '___EOS___']", "index": 4105 }, { "content": "def storePoint(p):\n global _pickPoint\n _pickPoint = p", "metadata": "root.storePoint", "header": "['module', '___EOS___']", "index": 4115 }, { "content": "def getPickPoint():\n global _pickPoint\n return _pickPoint", "metadata": "root.getPickPoint", "header": "['module', '___EOS___']", "index": 4120 }, { "content": "def startPickPoint():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = storePoint", "metadata": "root.startPickPoint", "header": "['module', '___EOS___']", "index": 4125 }, { "content": "def startSelectToolTip():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = selectToolTip", "metadata": "root.startSelectToolTip", "header": "['module', '___EOS___']", "index": 4135 }, { "content": "def startDrillSegmentation():\n\n picker = PointPicker(numberOfPoints=3)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentDrill)", "metadata": "root.startDrillSegmentation", "header": "['module', '___EOS___']", "index": 4145 }, { "content": "def startDrillAutoSegmentation():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentDrillAuto)", "metadata": "root.startDrillAutoSegmentation", "header": "['module', '___EOS___']", "index": 4155 }, { "content": "def startDrillButtonSegmentation():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentDrillButton)", "metadata": "root.startDrillButtonSegmentation", "header": "['module', '___EOS___']", "index": 4165 }, { "content": "def startPointerTipSegmentation():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentPointerTip)", "metadata": "root.startPointerTipSegmentation", "header": "['module', '___EOS___']", "index": 4175 }, { "content": "def startDrillAutoSegmentationAlignedWithTable():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentDrillAlignedWithTable)", "metadata": "root.startDrillAutoSegmentationAlignedWithTable", "header": "['module', '___EOS___']", "index": 4185 }, { "content": "def startDrillBarrelSegmentation():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentDrillBarrel)", "metadata": "root.startDrillBarrelSegmentation", "header": "['module', '___EOS___']", "index": 4195 }, { "content": "def startDrillWallSegmentation():\n\n picker = PointPicker(numberOfPoints=3)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = True\n picker.start()\n picker.annotationFunc = functools.partial(segmentDrillWall)", "metadata": "root.startDrillWallSegmentation", "header": "['module', '___EOS___']", "index": 4205 }, { "content": "def startDrillWallSegmentationConstrained(rightAngleLocation):\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = False\n picker.start()\n picker.annotationFunc = functools.partial(segmentDrillWallConstrained, rightAngleLocation)", "metadata": "root.startDrillWallSegmentationConstrained", "header": "['module', '___EOS___']", "index": 4214 }, { "content": "def startDrillInHandSegmentation():\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.drawLines = True\n picker.start()\n picker.annotationFunc = functools.partial(segmentDrillInHand)", "metadata": "root.startDrillInHandSegmentation", "header": "['module', '___EOS___']", "index": 4223 }, { "content": "def startSegmentDebrisWall():\n\n picker = PointPicker(numberOfPoints=1)\n addViewPicker(picker)\n picker.enabled = True\n picker.start()\n picker.annotationFunc = functools.partial(segmentDebrisWall)", "metadata": "root.startSegmentDebrisWall", "header": "['module', '___EOS___']", "index": 4233 }, { "content": "def startSegmentDebrisWallManual():\n\n picker = PointPicker(numberOfPoints=2)\n addViewPicker(picker)\n picker.enabled = True\n picker.start()\n picker.annotationFunc = functools.partial(segmentDebrisWallManual)", "metadata": "root.startSegmentDebrisWallManual", "header": "['module', '___EOS___']", "index": 4241 }, { "content": "def selectToolTip(point1):\n print point1", "metadata": "root.selectToolTip", "header": "['module', '___EOS___']", "index": 4250 }, { "content": "def segmentDebrisWallManual(point1, point2):\n\n p1, p2 = point1, point2\n\n d = DebugData()\n d.addSphere(p1, radius=0.01)\n d.addSphere(p2, radius=0.01)\n d.addLine(p1, p2)\n edgeObj = updatePolyData(d.getPolyData(), 'debris plane edge', visible=True)\n edgeObj.points = [p1, p2]\n\n xaxis = p2 - p1\n xaxis /= np.linalg.norm(xaxis)\n zaxis = np.array([0.0, 0.0, 1.0])\n yaxis = np.cross(zaxis, xaxis)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(p1)\n\n updateFrame(t, 'debris plane frame', parent=edgeObj, visible=False)\n\n refFrame = vtk.vtkTransform()\n refFrame.PostMultiply()\n refFrame.SetMatrix(t.GetMatrix())\n refFrame.Translate(-xaxis + yaxis + zaxis*20.0)\n updateFrame(refFrame, 'debris reference frame', parent=edgeObj, visible=False)", "metadata": "root.segmentDebrisWallManual", "header": "['module', '___EOS___']", "index": 4255 }, { "content": "def segmentDebrisWall(point1):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = shallowCopy(inputObj.polyData)\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n\n polyData, origin, normal = applyPlaneFit(polyData, distanceThreshold=0.02, expectedNormal=viewPlaneNormal, perpendicularAxis=viewPlaneNormal,\n searchOrigin=point1, searchRadius=0.25, angleEpsilon=0.7, returnOrigin=True)\n\n\n planePoints = thresholdPoints(polyData, 'dist_to_plane', [-0.02, 0.02])\n updatePolyData(planePoints, 'unbounded plane points', parent=getDebugFolder(), visible=False)\n\n\n planePoints = applyVoxelGrid(planePoints, leafSize=0.03)\n planePoints = labelOutliers(planePoints, searchRadius=0.06, neighborsInSearchRadius=10)\n\n updatePolyData(planePoints, 'voxel plane points', parent=getDebugFolder(), colorByName='is_outlier', visible=False)\n\n planePoints = thresholdPoints(planePoints, 'is_outlier', [0, 0])\n\n planePoints = labelDistanceToPoint(planePoints, point1)\n clusters = extractClusters(planePoints, clusterTolerance=0.10)\n clusters.sort(key=lambda x: vtkNumpy.getNumpyFromVtk(x, 'distance_to_point').min())\n\n planePoints = clusters[0]\n planeObj = updatePolyData(planePoints, 'debris plane points', parent=getDebugFolder(), visible=False)\n\n\n perpAxis = [0,0,-1]\n perpAxis /= np.linalg.norm(perpAxis)\n edgeAxis = np.cross(normal, perpAxis)\n\n edgePoints = computeEdge(planePoints, edgeAxis, perpAxis)\n edgePoints = vtkNumpy.getVtkPolyDataFromNumpyPoints(edgePoints)\n updatePolyData(edgePoints, 'edge points', parent=getDebugFolder(), visible=False)\n\n\n linePoint, lineDirection, _ = applyLineFit(edgePoints)\n\n #binCounts = computePointCountsAlongAxis(planePoints, lineDirection)\n\n\n xaxis = lineDirection\n yaxis = normal\n\n zaxis = np.cross(xaxis, yaxis)\n\n if np.dot(zaxis, [0, 0, 1]) < 0:\n zaxis *= -1\n xaxis *= -1\n\n pts = vtkNumpy.getNumpyFromVtk(planePoints, 'Points')\n\n dists = np.dot(pts-linePoint, xaxis)\n\n p1 = linePoint + xaxis*np.min(dists)\n p2 = linePoint + xaxis*np.max(dists)\n\n p1 = projectPointToPlane(p1, origin, normal)\n p2 = projectPointToPlane(p2, origin, normal)\n\n d = DebugData()\n d.addSphere(p1, radius=0.01)\n d.addSphere(p2, radius=0.01)\n d.addLine(p1, p2)\n edgeObj = updatePolyData(d.getPolyData(), 'debris plane edge', parent=planeObj, visible=True)\n edgeObj.points = [p1, p2]\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(p1)\n\n updateFrame(t, 'debris plane frame', parent=planeObj, visible=False)\n\n refFrame = vtk.vtkTransform()\n refFrame.PostMultiply()\n refFrame.SetMatrix(t.GetMatrix())\n refFrame.Translate(-xaxis + yaxis + zaxis*20.0)\n updateFrame(refFrame, 'debris reference frame', parent=planeObj, visible=False)", "metadata": "root.segmentDebrisWall", "header": "['module', '___EOS___']", "index": 4284 }, { "content": "def segmentBoundedPlaneByAnnotation(point1, point2):\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = shallowCopy(inputObj.polyData)\n\n\n viewPlaneNormal = np.array(getSegmentationView().camera().GetViewPlaneNormal())\n\n polyData, origin, normal = applyPlaneFit(polyData, distanceThreshold=0.015, expectedNormal=viewPlaneNormal, perpendicularAxis=viewPlaneNormal,\n searchOrigin=point1, searchRadius=0.3, angleEpsilon=0.7, returnOrigin=True)\n\n\n planePoints = thresholdPoints(polyData, 'dist_to_plane', [-0.015, 0.015])\n updatePolyData(planePoints, 'unbounded plane points', parent=getDebugFolder(), visible=False)\n\n\n planePoints = applyVoxelGrid(planePoints, leafSize=0.03)\n planePoints = labelOutliers(planePoints, searchRadius=0.06, neighborsInSearchRadius=12)\n\n updatePolyData(planePoints, 'voxel plane points', parent=getDebugFolder(), colorByName='is_outlier', visible=False)\n\n planePoints = thresholdPoints(planePoints, 'is_outlier', [0, 0])\n\n planePoints = labelDistanceToPoint(planePoints, point1)\n clusters = extractClusters(planePoints, clusterTolerance=0.10)\n clusters.sort(key=lambda x: vtkNumpy.getNumpyFromVtk(x, 'distance_to_point').min())\n\n planePoints = clusters[0]\n updatePolyData(planePoints, 'plane points', parent=getDebugFolder(), visible=False)\n\n\n perpAxis = point2 - point1\n perpAxis /= np.linalg.norm(perpAxis)\n edgeAxis = np.cross(normal, perpAxis)\n\n edgePoints = computeEdge(planePoints, edgeAxis, perpAxis)\n edgePoints = vtkNumpy.getVtkPolyDataFromNumpyPoints(edgePoints)\n updatePolyData(edgePoints, 'edge points', parent=getDebugFolder(), visible=False)\n\n\n linePoint, lineDirection, _ = applyLineFit(edgePoints)\n\n zaxis = normal\n yaxis = lineDirection\n xaxis = np.cross(yaxis, zaxis)\n\n if np.dot(xaxis, perpAxis) < 0:\n xaxis *= -1\n\n # make right handed\n yaxis = np.cross(zaxis, xaxis)\n\n pts = vtkNumpy.getNumpyFromVtk(planePoints, 'Points')\n\n dists = np.dot(pts-linePoint, yaxis)\n\n p1 = linePoint + yaxis*np.min(dists)\n p2 = linePoint + yaxis*np.max(dists)\n\n p1 = projectPointToPlane(p1, origin, normal)\n p2 = projectPointToPlane(p2, origin, normal)\n\n d = DebugData()\n d.addSphere(p1, radius=0.01)\n d.addSphere(p2, radius=0.01)\n d.addLine(p1, p2)\n updatePolyData(d.getPolyData(), 'plane edge', parent=getDebugFolder(), visible=False)\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate((p1 + p2)/ 2.0)\n\n updateFrame(t, 'plane edge frame', parent=getDebugFolder(), visible=False)", "metadata": "root.segmentBoundedPlaneByAnnotation", "header": "['module', '___EOS___']", "index": 4367 }, { "content": "def perspective():\n\n global savedCameraParams\n if savedCameraParams is None:\n return\n\n aff = getDefaultAffordanceObject()\n if aff:\n aff.setProperty('Alpha', 1.0)\n\n obj = om.findObjectByName('pointcloud snapshot')\n if obj is not None:\n obj.actor.SetPickable(1)\n\n view = getSegmentationView()\n c = view.camera()\n c.ParallelProjectionOff()\n c.SetPosition(savedCameraParams['Position'])\n c.SetFocalPoint(savedCameraParams['FocalPoint'])\n c.SetViewUp(savedCameraParams['ViewUp'])\n view.setCameraManipulationStyle()\n view.render()", "metadata": "root.perspective", "header": "['module', '___EOS___']", "index": 4445 }, { "content": "def saveCameraParams(overwrite=False):\n\n global savedCameraParams\n if overwrite or (savedCameraParams is None):\n\n view = getSegmentationView()\n c = view.camera()\n savedCameraParams = dict(Position=c.GetPosition(), FocalPoint=c.GetFocalPoint(), ViewUp=c.GetViewUp())", "metadata": "root.saveCameraParams", "header": "['module', '___EOS___']", "index": 4469 }, { "content": "def getDefaultAffordanceObject():\n\n obj = om.getActiveObject()\n if isinstance(obj, AffordanceItem):\n return obj\n\n for obj in om.getObjects():\n if isinstance(obj, AffordanceItem):\n return obj", "metadata": "root.getDefaultAffordanceObject", "header": "['module', '___EOS___']", "index": 4480 }, { "content": "def getVisibleRobotModel():\n for obj in om.getObjects():\n if isinstance(obj, roboturdf.RobotModelItem) and obj.getProperty('Visible'):\n return obj", "metadata": "root.getVisibleRobotModel", "header": "['module', '___EOS___']", "index": 4490 }, { "content": "def orthoX():\n\n aff = getDefaultAffordanceObject()\n if not aff:\n return\n\n saveCameraParams()\n\n aff.updateParamsFromActorTransform()\n aff.setProperty('Alpha', 0.3)\n om.findObjectByName('pointcloud snapshot').actor.SetPickable(0)\n\n view = getSegmentationView()\n c = view.camera()\n c.ParallelProjectionOn()\n\n origin = aff.params['origin']\n viewDirection = aff.params['xaxis']\n viewUp = -aff.params['yaxis']\n viewDistance = aff.params['xwidth']*3\n scale = aff.params['zwidth']\n\n c.SetFocalPoint(origin)\n c.SetPosition(origin - viewDirection*viewDistance)\n c.SetViewUp(viewUp)\n c.SetParallelScale(scale)\n\n view.setActorManipulationStyle()\n view.render()", "metadata": "root.orthoX", "header": "['module', '___EOS___']", "index": 4495 }, { "content": "def orthoY():\n\n aff = getDefaultAffordanceObject()\n if not aff:\n return\n\n saveCameraParams()\n\n aff.updateParamsFromActorTransform()\n aff.setProperty('Alpha', 0.3)\n om.findObjectByName('pointcloud snapshot').actor.SetPickable(0)\n\n view = getSegmentationView()\n c = view.camera()\n c.ParallelProjectionOn()\n\n origin = aff.params['origin']\n viewDirection = aff.params['yaxis']\n viewUp = -aff.params['xaxis']\n viewDistance = aff.params['ywidth']*4\n scale = aff.params['zwidth']\n\n c.SetFocalPoint(origin)\n c.SetPosition(origin - viewDirection*viewDistance)\n c.SetViewUp(viewUp)\n c.SetParallelScale(scale)\n\n view.setActorManipulationStyle()\n view.render()", "metadata": "root.orthoY", "header": "['module', '___EOS___']", "index": 4526 }, { "content": "def orthoZ():\n\n aff = getDefaultAffordanceObject()\n if not aff:\n return\n\n saveCameraParams()\n\n aff.updateParamsFromActorTransform()\n aff.setProperty('Alpha', 0.3)\n om.findObjectByName('pointcloud snapshot').actor.SetPickable(0)\n\n view = getSegmentationView()\n c = view.camera()\n c.ParallelProjectionOn()\n\n origin = aff.params['origin']\n viewDirection = aff.params['zaxis']\n viewUp = -aff.params['yaxis']\n viewDistance = aff.params['zwidth']\n scale = aff.params['ywidth']*6\n\n c.SetFocalPoint(origin)\n c.SetPosition(origin - viewDirection*viewDistance)\n c.SetViewUp(viewUp)\n c.SetParallelScale(scale)\n\n view.setActorManipulationStyle()\n view.render()", "metadata": "root.orthoZ", "header": "['module', '___EOS___']", "index": 4557 }, { "content": "def zoomToDisplayPoint(displayPoint, boundsRadius=0.5, view=None):\n\n pickedPoint = pickPoint(displayPoint, getSegmentationView(), obj='pointcloud snapshot')\n if pickedPoint is None:\n return\n\n view = view or app.getCurrentRenderView()\n\n worldPt1, worldPt2 = getRayFromDisplayPoint(getSegmentationView(), displayPoint)\n\n diagonal = np.array([boundsRadius, boundsRadius, boundsRadius])\n bounds = np.hstack([pickedPoint - diagonal, pickedPoint + diagonal])\n bounds = [bounds[0], bounds[3], bounds[1], bounds[4], bounds[2], bounds[5]]\n view.renderer().ResetCamera(bounds)\n view.camera().SetFocalPoint(pickedPoint)\n view.render()", "metadata": "root.zoomToDisplayPoint", "header": "['module', '___EOS___']", "index": 4588 }, { "content": "def extractPointsAlongClickRay(position, ray, polyData=None, distanceToLineThreshold=0.025, nearestToCamera=False):\n\n #segmentationObj = om.findObjectByName('pointcloud snapshot')\n if polyData is None:\n polyData = getCurrentRevolutionData()\n\n if not polyData or not polyData.GetNumberOfPoints():\n return None\n\n polyData = labelDistanceToLine(polyData, position, position + ray)\n\n # extract points near line\n polyData = thresholdPoints(polyData, 'distance_to_line', [0.0, distanceToLineThreshold])\n if not polyData.GetNumberOfPoints():\n return None\n\n\n polyData = labelPointDistanceAlongAxis(polyData, ray, origin=position, resultArrayName='distance_along_line')\n polyData = thresholdPoints(polyData, 'distance_along_line', [0.20, 1e6])\n if not polyData.GetNumberOfPoints():\n return None\n\n updatePolyData(polyData, 'ray points', colorByName='distance_to_line', visible=False, parent=getDebugFolder())\n\n if nearestToCamera:\n dists = vtkNumpy.getNumpyFromVtk(polyData, 'distance_along_line')\n else:\n dists = vtkNumpy.getNumpyFromVtk(polyData, 'distance_to_line')\n\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n intersectionPoint = points[dists.argmin()]\n\n d = DebugData()\n d.addSphere( intersectionPoint, radius=0.005)\n d.addLine(position, intersectionPoint)\n obj = updatePolyData(d.getPolyData(), 'intersecting ray', visible=False, color=[0,1,0], parent=getDebugFolder())\n obj.actor.GetProperty().SetLineWidth(2)\n\n d2 = DebugData()\n end_of_ray = position + 2*ray\n d2.addLine(position, end_of_ray)\n obj2 = updatePolyData(d2.getPolyData(), 'camera ray', visible=False, color=[1,0,0], parent=getDebugFolder())\n obj2.actor.GetProperty().SetLineWidth(2)\n\n return intersectionPoint", "metadata": "root.extractPointsAlongClickRay", "header": "['module', '___EOS___']", "index": 4606 }, { "content": "def segmentDrillWallFromTag(position, ray):\n '''\n Fix the drill wall relative to a ray intersected with the wall\n Desc: given a position and a ray (typically derived from a camera pixel)\n Use that point to determine a position for the Drill Wall\n This function uses a hard coded offset between the position on the wall\n to produce the drill cutting origin\n '''\n\n\n #inputObj = om.findObjectByName('pointcloud snapshot')\n #polyData = shallowCopy(inputObj.polyData)\n polyData = getCurrentRevolutionData()\n\n if (polyData is None): # no data yet\n print \"no LIDAR data yet\"\n return False\n\n point1 = extractPointsAlongClickRay(position, ray, polyData )\n\n # view direction is out:\n viewDirection = -1 * SegmentationContext.getGlobalInstance().getViewDirection()\n polyDataOut, origin, normal = applyPlaneFit(polyData, expectedNormal=viewDirection, searchOrigin=point1, searchRadius=0.3, angleEpsilon=0.3, returnOrigin=True)\n\n # project the lidar point onto the plane (older, variance is >1cm with robot 2m away)\n #intersection_point = projectPointToPlane(point1, origin, normal)\n # intersect the ray with the plane (variance was about 4mm with robot 2m away)\n intersection_point = intersectLineWithPlane(position, ray, origin, normal)\n\n # Define a frame:\n xaxis = -normal\n zaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis = np.cross(xaxis, yaxis)\n t = transformUtils.getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(intersection_point)\n\n t2 = transformUtils.copyFrame(t)\n t2.PreMultiply()\n t3 = transformUtils.frameFromPositionAndRPY( [0,0.6,-0.25] , [0,0,0] )\n t2.Concatenate(t3)\n\n rightAngleLocation = 'bottom left'\n createDrillWall(rightAngleLocation, t2)\n\n wall= om.findObjectByName('wall')\n vis.updateFrame( t ,'wall fit tag', parent=wall, visible=False, scale=0.2)\n\n\n d = DebugData()\n d.addSphere( intersection_point, radius=0.002)\n obj = updatePolyData(d.getPolyData(), 'intersection', parent=wall, visible=False, color=[0,1,0]) #\n obj.actor.GetProperty().SetLineWidth(1)\n return True", "metadata": "root.segmentDrillWallFromTag", "header": "['module', '___EOS___']", "index": 4653 }, { "content": "def segmentDrillWallFromWallCenter():\n '''\n Get the drill wall target as an offset from the center of\n the full wall\n '''\n\n # find the valve wall and its center\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n # hardcoded position to target frame from center of wall\n # conincides with the distance from the april tag to this position\n wallFrame = transformUtils.copyFrame( findWallCenter(polyData) )\n wallFrame.PreMultiply()\n t3 = transformUtils.frameFromPositionAndRPY( [-0.07,-0.3276,0] , [180,-90,0] )\n wallFrame.Concatenate(t3)\n\n rightAngleLocation = 'bottom left'\n createDrillWall(rightAngleLocation, wallFrame)\n\n wall= om.findObjectByName('wall')\n vis.updateFrame( wallFrame ,'wall fit lidar', parent=wall, visible=False, scale=0.2)", "metadata": "root.segmentDrillWallFromWallCenter", "header": "['module', '___EOS___']", "index": 4711 }, { "content": "def findFarRightCorner(polyData, linkFrame):\n '''\n Within a point cloud find the point to the far right from the link\n The input is the 4 corners of a minimum bounding box\n '''\n\n diagonalTransform = transformUtils.copyFrame(linkFrame)\n diagonalTransform.PreMultiply()\n diagonalTransform.Concatenate( transformUtils.frameFromPositionAndRPY([0,0,0], [0,0,45]) )\n vis.updateFrame(diagonalTransform, 'diagonal frame', parent=getDebugFolder(), visible=False)\n\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n viewOrigin = diagonalTransform.TransformPoint([0.0, 0.0, 0.0])\n viewX = diagonalTransform.TransformVector([1.0, 0.0, 0.0])\n viewY = diagonalTransform.TransformVector([0.0, 1.0, 0.0])\n viewZ = diagonalTransform.TransformVector([0.0, 0.0, 1.0])\n polyData = labelPointDistanceAlongAxis(polyData, viewY, origin=viewOrigin, resultArrayName='distance_along_foot_y')\n\n vis.updatePolyData( polyData, 'cornerPoints', parent='segmentation', visible=False)\n farRightIndex = vtkNumpy.getNumpyFromVtk(polyData, 'distance_along_foot_y').argmin()\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n return points[farRightIndex,:]", "metadata": "root.findFarRightCorner", "header": "['module', '___EOS___']", "index": 4736 }, { "content": "def findMinimumBoundingRectangle(polyData, linkFrame):\n '''\n Find minimum bounding rectangle of a rectangular point cloud\n The input is assumed to be a rectangular point cloud e.g. the top of a block or table\n Returns transform of far right corner (pointing away from robot)\n '''\n\n # Originally From: https://github.com/dbworth/minimum-area-bounding-rectangle\n polyData = applyVoxelGrid(polyData, leafSize=0.02)\n\n def get2DAsPolyData(xy_points):\n '''\n Convert a 2D numpy array to a 3D polydata by appending z=0\n '''\n d = np.vstack((xy_points.T, np.zeros( xy_points.shape[0]) )).T\n d2=d.copy()\n return vtkNumpy.getVtkPolyDataFromNumpyPoints( d2 )\n\n pts =vtkNumpy.getNumpyFromVtk( polyData , 'Points' )\n xy_points = pts[:,[0,1]]\n vis.updatePolyData( get2DAsPolyData(xy_points) , 'xy_points', parent=getDebugFolder(), visible=False)\n hull_points = qhull_2d.qhull2D(xy_points)\n vis.updatePolyData( get2DAsPolyData(hull_points) , 'hull_points', parent=getDebugFolder(), visible=False)\n # Reverse order of points, to match output from other qhull implementations\n hull_points = hull_points[::-1]\n # print 'Convex hull points: \\n', hull_points, \"\\n\"\n\n # Find minimum area bounding rectangle\n (rot_angle, rectArea, rectDepth, rectWidth, center_point, corner_points_ground) = min_bounding_rect.minBoundingRect(hull_points)\n vis.updatePolyData( get2DAsPolyData(corner_points_ground) , 'corner_points_ground', parent=getDebugFolder(), visible=False)\n\n polyDataCentroid = computeCentroid(polyData)\n cornerPoints = np.vstack((corner_points_ground.T, polyDataCentroid[2]*np.ones( corner_points_ground.shape[0]) )).T\n cornerPolyData = vtkNumpy.getVtkPolyDataFromNumpyPoints(cornerPoints)\n\n # Create a frame at the far right point - which points away from the robot\n farRightCorner = findFarRightCorner(cornerPolyData , linkFrame)\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n\n viewFrame = SegmentationContext.getGlobalInstance().getViewFrame()\n #vis.showFrame(viewFrame, \"viewFrame\")\n\n robotYaw = math.atan2( viewDirection[1], viewDirection[0] )*180.0/np.pi\n blockAngle = rot_angle*(180/math.pi)\n #print \"robotYaw \", robotYaw\n #print \"blockAngle \", blockAngle\n blockAngleAll = np.array([blockAngle , blockAngle+90 , blockAngle+180, blockAngle+270])\n\n values = blockAngleAll - robotYaw\n for i in range(0,4):\n if(values[i]>180):\n values[i]=values[i]-360\n\n values = abs(values)\n min_idx = np.argmin(values)\n if ( (min_idx==1) or (min_idx==3) ):\n #print \"flip rectDepth and rectWidth as angle is not away from robot\"\n temp = rectWidth ; rectWidth = rectDepth ; rectDepth = temp\n\n #print \"best angle\", blockAngleAll[min_idx]\n rot_angle = blockAngleAll[min_idx]*math.pi/180.0\n\n cornerTransform = transformUtils.frameFromPositionAndRPY( farRightCorner , [0,0, np.rad2deg(rot_angle) ] )\n\n vis.showFrame(cornerTransform, \"cornerTransform\", parent=getDebugFolder(), visible=False)\n\n #print \"Minimum area bounding box:\"\n #print \"Rotation angle:\", rot_angle, \"rad (\", rot_angle*(180/math.pi), \"deg )\"\n #print \"rectDepth:\", rectDepth, \" rectWidth:\", rectWidth, \" Area:\", rectArea\n #print \"Center point: \\n\", center_point # numpy array\n #print \"Corner points: \\n\", cornerPoints, \"\\n\" # numpy array\n return cornerTransform, rectDepth, rectWidth, rectArea", "metadata": "root.findMinimumBoundingRectangle", "header": "['module', '___EOS___']", "index": 4760 } ]

[ { "span": "import sys", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 10 }, { "span": "import time", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 11 }, { "span": "import PythonQt", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 15 }, { "span": "from PythonQt import QtCore, QtGui", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 34 }, { "span": "from director import mapsregistrar", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 34 }, { "span": "import drc as lcmdrc", "start_line": 37, "start_column": 0, "end_line": 37, "end_column": 20 } ]

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[ { "content": "# -*- coding: utf-8 -*-\n#\n# uptime documentation build configuration file, created by\n# sphinx-quickstart on Sun Jan 20 05:05:56 2013.\n#\n# This file is execfile()d with the current directory set to its containing dir.\n#\n# Note that not all possible configuration values are present in this\n# autogenerated file.\n#\n# All configuration values have a default; values that are commented out\n# serve to show the default.\n\nimport sys, os\n\n# If extensions (or modules to document with autodoc) are in another directory,\n# add these directories to sys.path here. If the directory is relative to the\n# documentation root, use os.path.abspath to make it absolute, like shown here.\n#sys.path.append(os.path.abspath('.'))\n\n# -- General configuration -----------------------------------------------------\n\n# Add any Sphinx extension module names here, as strings. They can be extensions\n# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.\nextensions = ['sphinx.ext.autodoc']\n\n# Add any paths that contain templates here, relative to this directory.\ntemplates_path = ['_templates']\n\n# The suffix of source filenames.\nsource_suffix = '.rst'\n\n# The encoding of source files.\n#source_encoding = 'utf-8'\n\n# The master toctree document.\nmaster_doc = 'index'\n\n# General information about the project.\nproject = u'uptime'\ncopyright = u'2013, Koen Crolla'\n\n# The version info for the project you're documenting, acts as replacement for\n# |version| and |release|, also used in various other places throughout the\n# built documents.\n#\n# The short X.Y version.\nversion = '3.0'\n# The full version, including alpha/beta/rc tags.\nrelease = '3.0.1'\n\n# The language for content autogenerated by Sphinx. Refer to documentation\n# for a list of supported languages.\n#language = None\n\n# There are two options for replacing |today|: either, you set today to some\n# non-false value, then it is used:\n#today = ''\n# Else, today_fmt is used as the format for a strftime call.\n#today_fmt = '%B %d, %Y'\n\n# List of documents that shouldn't be included in the build.\n#unused_docs = []\n\n# List of directories, relative to source directory, that shouldn't be searched\n# for source files.\nexclude_trees = ['_build']\n\n# The reST default role (used for this markup: `text`) to use for all documents.\n#default_role = None\n\n# If true, '()' will be appended to :func: etc. cross-reference text.\n#add_function_parentheses = True\n\n# If true, the current module name will be prepended to all description\n# unit titles (such as .. function::).\n#add_module_names = True\n\n# If true, sectionauthor and moduleauthor directives will be shown in the\n# output. They are ignored by default.\n#show_authors = False\n\n# The name of the Pygments (syntax highlighting) style to use.\npygments_style = 'sphinx'\n\n# A list of ignored prefixes for module index sorting.\n#modindex_common_prefix = []\n\n\n# -- Options for HTML output ---------------------------------------------------\n\n# The theme to use for HTML and HTML Help pages. Major themes that come with\n# Sphinx are currently 'default' and 'sphinxdoc'.\nhtml_theme = 'default'\n\n# Theme options are theme-specific and customize the look and feel of a theme\n# further. For a list of options available for each theme, see the\n# documentation.\n#html_theme_options = {}\n\n# Add any paths that contain custom themes here, relative to this directory.\n#html_theme_path = []\n\n# The name for this set of Sphinx documents. If None, it defaults to\n# \"<project> v<release> documentation\".\n#html_title = None\n\n# A shorter title for the navigation bar. Default is the same as html_title.\n#html_short_title = None\n\n# The name of an image file (relative to this directory) to place at the top\n# of the sidebar.\n#html_logo = None\n\n# The name of an image file (within the static path) to use as favicon of the\n# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32\n# pixels large.\n#html_favicon = None\n\n# Add any paths that contain custom static files (such as style sheets) here,\n# relative to this directory. They are copied after the builtin static files,\n# so a file named \"default.css\" will overwrite the builtin \"default.css\".\nhtml_static_path = ['_static']\n\n# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,\n# using the given strftime format.\n#html_last_updated_fmt = '%b %d, %Y'\n\n# If true, SmartyPants will be used to convert quotes and dashes to\n# typographically correct entities.\n#html_use_smartypants = True\n\n# Custom sidebar templates, maps document names to template names.\n#html_sidebars = {}\n\n# Additional templates that should be rendered to pages, maps page names to\n# template names.\n#html_additional_pages = {}\n\n# If false, no module index is generated.\n#html_use_modindex = True\n\n# If false, no index is generated.\n#html_use_index = True\n\n# If true, the index is split into individual pages for each letter.\n#html_split_index = False\n\n# If true, links to the reST sources are added to the pages.\n#html_show_sourcelink = True\n\n# If true, an OpenSearch description file will be output, and all pages will\n# contain a <link> tag referring to it. The value of this option must be the\n# base URL from which the finished HTML is served.\n#html_use_opensearch = ''\n\n# If nonempty, this is the file name suffix for HTML files (e.g. \".xhtml\").\n#html_file_suffix = ''\n\n# Output file base name for HTML help builder.\nhtmlhelp_basename = 'uptimedoc'\n\n\n# -- Options for LaTeX output --------------------------------------------------\n\n# The paper size ('letter' or 'a4').\n#latex_paper_size = 'letter'\n\n# The font size ('10pt', '11pt' or '12pt').\n#latex_font_size = '10pt'\n\n# Grouping the document tree into LaTeX files. List of tuples\n# (source start file, target name, title, author, documentclass [howto/manual]).\nlatex_documents = [\n ('index', 'uptime.tex', u'uptime Documentation',\n u'Koen Crolla', 'manual'),\n]\n\n# The name of an image file (relative to this directory) to place at the top of\n# the title page.\n#latex_logo = None\n\n# For \"manual\" documents, if this is true, then toplevel headings are parts,\n# not chapters.\n#latex_use_parts = False\n\n# Additional stuff for the LaTeX preamble.\n#latex_preamble = ''\n\n# Documents to append as an appendix to all manuals.\n#latex_appendices = []\n\n# If false, no module index is generated.\n#latex_use_modindex = True\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

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[ { "content": " def testSubgraph(self):\n numVertices = 10\n numFeatures = 3\n vList = VertexList(numVertices, numFeatures)\n vertices = numpy.random.rand(numVertices, numFeatures)\n vList.setVertices(vertices)\n\n graph = self.GraphType(vList)\n graph.addEdge(0, 1)\n graph.addEdge(0, 2)\n graph.addEdge(0, 3)\n graph.addEdge(2, 1)\n graph.addEdge(2, 5)\n graph.addEdge(2, 6)\n graph.addEdge(6, 9)\n\n subgraph = graph.subgraph([0,1,2,3])\n\n self.assertEquals(subgraph.getNumVertices(), 4)\n self.assertEquals(subgraph.getVertexList().getNumFeatures(), numFeatures)\n self.assertTrue((subgraph.getVertexList().getVertices(list(range(0, 4))) == vertices[list(range(0,4)), :]).all())\n self.assertEquals(subgraph.getNumEdges(), 4)\n self.assertTrue(subgraph.getEdge(0, 1) == 1)\n self.assertTrue(subgraph.getEdge(0, 2) == 1)\n self.assertTrue(subgraph.getEdge(0, 3) == 1)\n self.assertTrue(subgraph.getEdge(2, 1) == 1)\n\n subgraph = graph.subgraph([1,2,5,6])\n self.assertEquals(subgraph.getNumVertices(), 4)\n self.assertEquals(subgraph.getVertexList().getNumFeatures(), numFeatures)\n self.assertEquals(subgraph.getNumEdges(), 3)\n self.assertTrue((subgraph.getVertexList().getVertices([0,1,2,3]) == vertices[[1,2,5,6], :]).all())\n self.assertTrue(subgraph.getEdge(0, 1) == 1)\n self.assertTrue(subgraph.getEdge(1, 2) == 1)\n self.assertTrue(subgraph.getEdge(1, 3) == 1)\n\n\n #Test case of directed graph\n numVertices = 10\n numFeatures = 3\n vList = VertexList(numVertices, numFeatures)\n vertices = numpy.random.rand(numVertices, numFeatures)\n vList.setVertices(vertices)\n\n graph = self.GraphType(vList, False)\n graph.addEdge(0, 1)\n graph.addEdge(0, 2)\n graph.addEdge(0, 3)\n graph.addEdge(2, 1)\n graph.addEdge(2, 5)\n graph.addEdge(2, 6)\n graph.addEdge(6, 9)\n\n subgraph = graph.subgraph([0,1,2,3])\n\n self.assertEquals(subgraph.isUndirected(), False)\n self.assertEquals(subgraph.getNumVertices(), 4)\n self.assertEquals(subgraph.getVertexList().getNumFeatures(), numFeatures)\n self.assertTrue((subgraph.getVertexList().getVertices(list(range(0, 4))) == vertices[list(range(0,4)), :]).all())\n self.assertEquals(subgraph.getNumEdges(), 4)\n self.assertTrue(subgraph.getEdge(0, 1) == 1)\n self.assertTrue(subgraph.getEdge(0, 2) == 1)\n self.assertTrue(subgraph.getEdge(0, 3) == 1)\n self.assertTrue(subgraph.getEdge(2, 1) == 1)\n\n subgraph = graph.subgraph([1,2,5,6])\n self.assertEquals(subgraph.getNumVertices(), 4)\n self.assertEquals(subgraph.getVertexList().getNumFeatures(), numFeatures)\n self.assertEquals(subgraph.getNumEdges(), 3)\n self.assertTrue((subgraph.getVertexList().getVertices([0,1,2,3]) == vertices[[1,2,5,6], :]).all())\n self.assertTrue(subgraph.getEdge(1, 0) == 1)\n self.assertTrue(subgraph.getEdge(1, 2) == 1)\n self.assertTrue(subgraph.getEdge(1, 3) == 1)\n\n subgraph = graph.subgraph([])", "metadata": "root.MatrixGraphTest.testSubgraph", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 607 }, { "content": " def testEgoGraph(self):\n numVertices = 6\n numFeatures = 3\n vList = VertexList(numVertices, numFeatures)\n\n graph = self.GraphType(vList, True)\n graph.addEdge(0, 1)\n graph.addEdge(0, 2)\n graph.addEdge(0, 3)\n graph.addEdge(2, 1)\n graph.addEdge(2, 3)\n graph.addEdge(4, 1)\n\n egoGraph = graph.egoGraph(0)\n\n self.assertTrue(egoGraph.getNumVertices() == 4)\n self.assertTrue(egoGraph.getNumEdges() == 5)\n self.assertEquals(egoGraph.getEdge(0,1), 1)\n self.assertEquals(egoGraph.getEdge(0,2), 1)\n self.assertEquals(egoGraph.getEdge(0,3), 1)\n self.assertEquals(egoGraph.getEdge(2,1), 1)\n self.assertEquals(egoGraph.getEdge(2,3), 1)\n\n egoGraph = graph.egoGraph(4)\n\n self.assertTrue(egoGraph.getNumVertices() == 2)\n self.assertTrue(egoGraph.getNumEdges() == 1)\n self.assertEquals(egoGraph.getEdge(1,0), 1)\n\n egoGraph = graph.egoGraph(3)\n\n self.assertTrue(egoGraph.getNumVertices() == 3)\n self.assertTrue(egoGraph.getNumEdges() == 3)\n self.assertEquals(egoGraph.getEdge(0,2), 1)\n self.assertEquals(egoGraph.getEdge(0,1), 1)\n self.assertEquals(egoGraph.getEdge(2,1), 1)\n\n\n egoGraph = graph.egoGraph(5)\n self.assertTrue(egoGraph.getNumVertices() == 1)\n self.assertTrue(egoGraph.getNumEdges() == 0)", "metadata": "root.MatrixGraphTest.testEgoGraph", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 1068 }, { "content": " def testRemoveAllEdges(self):\n numVertices = 6\n numFeatures = 3\n vList = VertexList(numVertices, numFeatures)\n\n graph = self.GraphType(vList, True)\n graph.addEdge(0, 1)\n graph.addEdge(0, 2)\n graph.addEdge(0, 3)\n graph.addEdge(2, 1)\n graph.addEdge(2, 3)\n graph.addEdge(4, 1)\n\n self.assertEquals(graph.getNumEdges(), 6)\n\n graph.removeAllEdges()\n self.assertTrue(graph.getEdge(0,1) == None)\n self.assertEquals(graph.getNumEdges(), 0)", "metadata": "root.MatrixGraphTest.testRemoveAllEdges", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 1113 }, { "content": " def testGetNumDirEdges(self):\n numVertices = 10\n numFeatures = 1\n\n vList = VertexList(numVertices, numFeatures)\n graph = self.GraphType(vList)\n graph.addEdge(0, 1, 0.1)\n graph.addEdge(1, 2, 0.1)\n\n self.assertTrue(graph.getNumDirEdges() == 4)\n graph.addEdge(1, 1)\n self.assertTrue(graph.getNumDirEdges() == 5)\n\n graph = self.GraphType(vList, False)\n graph.addEdge(0, 1)\n graph.addEdge(1, 2)\n\n self.assertTrue(graph.getNumDirEdges() == 2)\n graph.addEdge(1, 1)\n self.assertTrue(graph.getNumDirEdges() == 3)", "metadata": "root.MatrixGraphTest.testGetNumDirEdges", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 1295 }, { "content": " def testFromNetworkXGraph(self):\n try:\n import networkx\n except ImportError as error:\n logging.debug(error)\n return\n\n nxGraph = networkx.Graph()\n nxGraph.graph[\"VListType\"] = GeneralVertexList\n #nxGraph.graph[\"numFeatures\"] = 2\n #nxGraph.add_node(0)\n nxGraph.add_edge(0, 1)\n nxGraph.add_edge(1, 2)\n nxGraph.add_edge(1, 3)\n\n graph = self.GraphType.fromNetworkXGraph(nxGraph)\n\n self.assertTrue(graph.getNumVertices() == 4)\n self.assertTrue(graph.isUndirected() == True)\n self.assertTrue(graph.getNumEdges() == 3)\n self.assertTrue(graph.getEdge(0, 1) == 1)\n self.assertTrue(graph.getEdge(1, 2) == 1)\n self.assertTrue(graph.getEdge(1, 3) == 1)\n\n #Try directed graphs\n nxGraph = networkx.DiGraph()\n nxGraph.graph[\"VListType\"] = GeneralVertexList\n #nxGraph.add_node(0)\n nxGraph.add_edge(0, 1)\n nxGraph.add_edge(1, 2)\n nxGraph.add_edge(1, 3)\n\n graph = self.GraphType.fromNetworkXGraph(nxGraph)\n\n self.assertTrue(graph.getNumVertices() == 4)\n self.assertTrue(graph.isUndirected() == False)\n self.assertTrue(graph.getNumEdges() == 3)\n self.assertTrue(graph.getEdge(0, 1) == 1)\n self.assertTrue(graph.getEdge(1, 2) == 1)\n self.assertTrue(graph.getEdge(1, 3) == 1)\n\n #Using a multigraph should fail\n nxGraph = networkx.MultiGraph()\n self.assertRaises(ValueError, self.GraphType.fromNetworkXGraph, nxGraph)\n\n #Test node labels\n nxGraph = networkx.DiGraph()\n nxGraph.graph[\"VListType\"] = GeneralVertexList\n nxGraph.add_node(\"a\", label=\"abc\")\n nxGraph.add_node(\"b\", label=\"i\")\n nxGraph.add_node(\"c\", label=\"am\")\n nxGraph.add_node(\"d\", label=\"here\")\n nxGraph.add_edge(\"a\", \"b\")\n nxGraph.add_edge(\"b\", \"c\")\n nxGraph.add_edge(\"b\", \"d\")\n\n graph = self.GraphType.fromNetworkXGraph(nxGraph)\n\n nodeDict = {}\n for i in range(len(nxGraph.nodes())):\n nodeDict[nxGraph.nodes()[i]] = i\n\n self.assertTrue(graph.getNumVertices() == 4)\n self.assertTrue(graph.isUndirected() == False)\n self.assertTrue(graph.getNumEdges() == 3)\n self.assertTrue(graph.getEdge(nodeDict[\"a\"], nodeDict[\"b\"]) == 1)\n self.assertTrue(graph.getEdge(nodeDict[\"b\"], nodeDict[\"c\"]) == 1)\n self.assertTrue(graph.getEdge(nodeDict[\"b\"], nodeDict[\"d\"]) == 1)\n\n self.assertTrue(graph.getVertex(0) == \"abc\")\n self.assertTrue(graph.getVertex(1) == \"am\")\n self.assertTrue(graph.getVertex(2) == \"i\")\n self.assertTrue(graph.getVertex(3) == \"here\")\n\n #Test in conjunction with toNetworkXGraph\n numVertices = 10\n numFeatures = 2 \n vList = VertexList(numVertices, numFeatures)\n vList.setVertices(numpy.random.rand(numVertices, numFeatures))\n\n graph = self.GraphType(vList)\n graph.addEdge(0, 1)\n graph.addEdge(0, 5)\n graph.addEdge(2, 5)\n graph.addEdge(3, 4)\n\n nxGraph = graph.toNetworkXGraph()\n graph2 = self.GraphType.fromNetworkXGraph(nxGraph)\n\n tol = 10**-6\n self.assertTrue(numpy.linalg.norm(graph.getVertexList().getVertices(list(range(numVertices))) -graph2.getVertexList().getVertices(list(range(numVertices)))) < tol)\n self.assertEquals(graph.getNumEdges(), graph2.getNumEdges())\n \n for i in range(numVertices):\n for j in range(numVertices):\n self.assertEquals(graph.getEdge(i, j), graph2.getEdge(i, j))\n\n #Use a GeneralVertexList\n numVertices = 10\n vList = GeneralVertexList(numVertices)\n for i in range(numVertices):\n vList.setVertex(i, \"s\" + str(i))\n\n graph = self.GraphType(vList)\n graph.addEdge(0, 1)\n graph.addEdge(0, 5)\n graph.addEdge(2, 5)\n graph.addEdge(3, 4)\n\n nxGraph = graph.toNetworkXGraph()\n graph2 = self.GraphType.fromNetworkXGraph(nxGraph)\n\n for i in range(numVertices):\n self.assertEquals(graph.getVertex(i), graph2.getVertex(i))\n \n self.assertEquals(graph.getNumEdges(), graph2.getNumEdges())\n \n for i in range(numVertices):\n for j in range(numVertices):\n self.assertEquals(graph.getEdge(i, j), graph2.getEdge(i, j))", "metadata": "root.MatrixGraphTest.testFromNetworkXGraph", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 1423 }, { "content": " def testLoad(self):\n try:\n numVertices = 10\n numFeatures = 1\n vList = VertexList(numVertices, numFeatures)\n vList.setVertices(numpy.random.rand(numVertices, numFeatures))\n\n graph = self.GraphType(vList, True)\n graph.addEdge(0, 1, 0.1)\n graph.addEdge(1, 2, 0.2)\n graph.addEdge(1, 3, 0.3)\n\n tempDir = PathDefaults.getTempDir()\n tempFile = tempDir + \"testGraph\"\n\n graph.save(tempFile)\n\n dataDir = PathDefaults.getDataDir()\n os.chdir(dataDir)\n currentPath = os.getcwd()\n graph2 = self.GraphType.load(tempFile)\n\n #Make sure save doesn't change the path\n self.assertEquals(os.getcwd(), currentPath)\n\n self.assertEquals(graph.getNumVertices(), graph.getNumVertices())\n self.assertEquals(graph.getNumEdges(), graph.getNumEdges())\n self.assertTrue(graph2.isUndirected() == True)\n self.assertTrue((graph.getVertexList().getVertices(list(range(numVertices))) == graph2.getVertexList().getVertices(list(range(numVertices)))).all())\n self.assertTrue((graph.getAllEdges() == graph2.getAllEdges()).all())\n self.assertTrue(graph2.getEdge(0, 1) == 0.1)\n self.assertTrue(graph2.getEdge(1, 2) == 0.2)\n self.assertTrue(graph2.getEdge(1, 3) == 0.3)\n\n #Test if loading of old-style graph files works\n testDir = PathDefaults.getDataDir() + \"test/\"\n graphFilename = testDir + \"fd\"\n\n graph = self.GraphType.load(graphFilename)\n\n self.assertEquals(graph.getEdge(1, 1), 1)\n self.assertEquals(graph.getEdge(2, 2), 1)\n self.assertEquals(graph.getNumVertices(), 10)\n except IOError as e:\n logging.warn(e)\n pass\n except OSError as e:\n logging.warn(e)\n pass", "metadata": "root.MatrixGraphTest.testLoad", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 1625 }, { "content": " def testMaxEigenvector(self):\n tol = 10**-6\n numVertices = 5\n numFeatures = 0\n vList = VertexList(numVertices, numFeatures)\n\n graph = self.GraphType(vList, False)\n graph.addEdge(0, 1)\n graph.addEdge(1, 2, 0.1)\n graph.addEdge(2, 0)\n\n v = graph.maxEigenvector()\n\n W = graph.getWeightMatrix()\n lmbda, U = numpy.linalg.eig(W)\n i = numpy.argmax(lmbda)\n\n self.assertTrue(numpy.linalg.norm(U[:, i] - v) < tol)", "metadata": "root.MatrixGraphTest.testMaxEigenvector", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 1675 }, { "content": " def testToNetworkXGraph(self):\n try:\n import networkx\n except ImportError as error:\n logging.debug(error)\n return\n\n numVertices = 10\n numFeatures = 3\n vList = VertexList(numVertices, numFeatures)\n\n graph = self.GraphType(vList)\n graph.addEdge(5, 1, 4)\n graph.addEdge(5, 2, 2)\n graph.addEdge(2, 7, 4)\n graph.addEdge(1, 9, 6)\n\n graph2 = self.GraphType(vList, False)\n graph2.addEdge(5, 1, 4)\n graph2.addEdge(5, 2, 2)\n graph2.addEdge(2, 7, 4)\n graph2.addEdge(1, 9, 6)\n networkXGraph = graph.toNetworkXGraph()\n\n self.assertEquals(networkXGraph.get_edge_data(5, 1), {'value' : 4.0})\n self.assertEquals(networkXGraph.get_edge_data(5, 2), {'value' : 2.0})\n self.assertEquals(networkXGraph.get_edge_data(2, 7), {'value' : 4.0})\n self.assertEquals(networkXGraph.get_edge_data(1, 9), {'value' : 6.0})\n self.assertEquals(networkXGraph.get_edge_data(9, 1), {'value' : 6.0})\n\n vertexIndexList = []\n\n for i in networkXGraph.__iter__():\n vertexIndexList.append(i)\n\n vertexIndexList.sort()\n self.assertTrue(vertexIndexList == list(range(numVertices)))\n self.assertTrue(networkXGraph.edges() == [(1, 9), (1, 5), (2, 5), (2, 7)])\n self.assertTrue(type(networkXGraph) == networkx.Graph)\n\n #Now we test the case where we have a directed graph\n networkXGraph = graph2.toNetworkXGraph()\n\n self.assertEquals(networkXGraph.get_edge_data(5, 1), {'value' : 4.0})\n self.assertEquals(networkXGraph.get_edge_data(5, 2), {'value' : 2.0})\n self.assertEquals(networkXGraph.get_edge_data(2, 7), {'value' : 4.0})\n self.assertEquals(networkXGraph.get_edge_data(1, 9), {'value' : 6.0})\n self.assertFalse(networkXGraph.has_edge(9, 1))\n\n vertexIndexList = []\n\n for i in networkXGraph.__iter__():\n vertexIndexList.append(i)\n\n vertexIndexList.sort()\n self.assertTrue(vertexIndexList == list(range(numVertices)))\n self.assertTrue(networkXGraph.edges() == [(1, 9), (2, 7), (5, 1), (5, 2)])\n self.assertTrue(type(networkXGraph) == networkx.DiGraph)\n\n #Test a graph with no edges\n numVertices = 10\n numFeatures = 3\n vList = VertexList(numVertices, numFeatures)\n vList.setVertices(numpy.random.rand(numVertices, numFeatures))\n\n graph = self.GraphType(vList)\n networkXGraph = graph.toNetworkXGraph()\n\n self.assertTrue(networkXGraph.order() == numVertices)\n self.assertTrue(networkXGraph.size() == 0)\n\n self.assertTrue((networkXGraph.nodes(data=True)[0][1]['label'] ==graph.getVertex(0)).all())", "metadata": "root.MatrixGraphTest.testToNetworkXGraph", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 1821 }, { "content": " def testTriangleSequence(self):\n tol = 10**-6\n numVertices = 5\n numFeatures = 0\n vList = VertexList(numVertices, numFeatures)\n\n graph = self.GraphType(vList, True)\n\n seq = graph.triangleSequence()\n self.assertTrue(numpy.linalg.norm(seq - numpy.array([0, 0, 0, 0, 0])) < tol)\n\n graph.addEdge(0, 1)\n graph.addEdge(0, 2, 0.1)\n graph.addEdge(1, 2)\n\n seq = graph.triangleSequence()\n self.assertTrue(numpy.linalg.norm(seq - numpy.array([2, 2, 2, 0, 0])) < tol)\n\n graph.addEdge(2, 3)\n graph.addEdge(3, 0, -0.3)\n\n seq = graph.triangleSequence()\n self.assertTrue(numpy.linalg.norm(seq - numpy.array([4, 2, 4, 2, 0])) < tol)\n\n graph.removeAllEdges()\n graph.addEdge(0, 0)\n seq = graph.triangleSequence()\n self.assertTrue(numpy.linalg.norm(seq - numpy.array([0, 0, 0, 0, 0])) < tol)\n\n #Test on directed graphs\n graph = self.GraphType(vList, False)\n graph.addEdge(0, 1)\n graph.addEdge(1, 2, 0.1)\n graph.addEdge(2, 0)\n\n seq = graph.triangleSequence()\n self.assertTrue(numpy.linalg.norm(seq - numpy.array([1, 1, 1, 0, 0])) < tol)\n\n graph.addEdge(0, 3)\n graph.addEdge(3, 4, 0.1)\n graph.addEdge(4, 0)\n\n seq = graph.triangleSequence()\n self.assertTrue(numpy.linalg.norm(seq - numpy.array([2, 1, 1, 1, 1])) < tol)", "metadata": "root.MatrixGraphTest.testTriangleSequence", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 1894 }, { "content": " def testNormalisedLaplacianSym(self):\n numVertices = 10\n numFeatures = 0\n\n vList = VertexList(numVertices, numFeatures)\n graph = self.GraphType(vList)\n graph.addEdge(0, 1)\n graph.addEdge(0, 2)\n graph.addEdge(0, 9)\n graph.addEdge(1, 1)\n graph.addEdge(1, 5)\n\n L = graph.normalisedLaplacianSym()\n\n W = graph.getWeightMatrix()\n L2 = numpy.zeros((numVertices, numVertices))\n d = graph.outDegreeSequence()\n\n for i in range(numVertices):\n for j in range(numVertices):\n if d[i] != 0 and d[j]!= 0:\n Wij = W[i, j]/(numpy.sqrt(d[i]*d[j]))\n else:\n Wij = 0\n\n if i == j:\n L2[i, j] = 1 - Wij\n else:\n L2[i, j] = -Wij\n\n tol = 10**-6\n self.assertTrue(numpy.linalg.norm(L2 - L) < tol)", "metadata": "root.MatrixGraphTest.testNormalisedLaplacianSym", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 2088 }, { "content": " def testNormalisedLaplacianRw(self):\n numVertices = 10\n numFeatures = 0\n\n vList = VertexList(numVertices, numFeatures)\n graph = self.GraphType(vList)\n graph.addEdge(0, 1)\n graph.addEdge(0, 2)\n graph.addEdge(0, 9)\n graph.addEdge(1, 1)\n graph.addEdge(1, 5)\n\n L = graph.normalisedLaplacianRw()\n\n W = graph.getWeightMatrix()\n L2 = numpy.zeros((numVertices, numVertices))\n d = graph.outDegreeSequence()\n\n for i in range(numVertices):\n for j in range(numVertices):\n if d[i] != 0 and d[j]!= 0:\n Wij = W[i, j]/(d[i])\n else:\n Wij = 0\n\n if i == j:\n L2[i, j] = 1 - Wij\n else:\n L2[i, j] = -Wij\n\n tol = 10**-6\n self.assertTrue(numpy.linalg.norm(L2 - L) < tol)", "metadata": "root.MatrixGraphTest.testNormalisedLaplacianRw", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 2121 }, { "content": " def testAdjacencyList(self):\n numVertices = 5\n numFeatures = 0\n vList = VertexList(numVertices, numFeatures)\n graph = self.GraphType(vList, True)\n graph.addEdge(0, 1, 0.1)\n graph.addEdge(1, 2, 0.2)\n graph.addEdge(3, 0, 0.3)\n graph.addEdge(4, 1, 0.4)\n\n L, W = graph.adjacencyList()\n\n for i in range(numVertices):\n self.assertTrue((L[i]==numpy.sort(graph.neighbours(i))).all())\n\n self.assertTrue(W[0][0] == 0.1)\n self.assertTrue(W[0][1] == 0.3)\n self.assertTrue(W[4][0] == 0.4)\n\n #Now use just adjacencies \n L, W = graph.adjacencyList(False)\n\n for i in range(numVertices):\n self.assertTrue((L[i]==numpy.sort(graph.neighbours(i))).all())\n\n self.assertTrue(W[0][0] == 1)\n self.assertTrue(W[0][1] == 1)\n self.assertTrue(W[4][0] == 1)", "metadata": "root.MatrixGraphTest.testAdjacencyList", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 2232 }, { "content": " def testToIGraph(self):\n try:\n import igraph\n except ImportError as error:\n logging.debug(error)\n return\n\n numVertices = 7\n graph = self.GraphType(GeneralVertexList(numVertices))\n graph.addEdge(1, 1, 0.1)\n graph.addEdge(1, 3, 0.5)\n graph.addEdge(1, 5, 0.5)\n graph.addEdge(3, 5, 0.5)\n graph.addEdge(5, 6, 0.1)\n\n graph.setVertex(1, \"a\")\n graph.setVertex(2, \"b\")\n graph.setVertex(3, \"c\")\n\n igraph = graph.toIGraph()\n\n self.assertEquals(len(igraph.vs), graph.getNumVertices())\n self.assertEquals(len(igraph.es), graph.getNumEdges())\n\n self.assertEquals(igraph.vs[\"label\"][1], \"a\")\n self.assertEquals(igraph.vs[\"label\"][2], \"b\")\n self.assertEquals(igraph.vs[\"label\"][3], \"c\")\n\n edges = igraph.get_edgelist()\n\n i = 0 \n for e in edges:\n self.assertTrue(graph.getEdge(e[0], e[1]) == igraph.es[i][\"value\"])\n i += 1 ", "metadata": "root.MatrixGraphTest.testToIGraph", "header": "['class', 'MatrixGraphTest', '(', ')', ':', '___EOS___']", "index": 2286 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2 ]

[ { "content": " def setup_pipeline(self, pipeline, **kwargs):\n \"\"\"setup_pipeline(controller, pipeline, locator, currentVersion,\n view, aliases, **kwargs)\n Matches a pipeline with the persistent pipeline and creates\n instances of modules that aren't in the cache.\n \"\"\"\n def fetch(name, default):\n return kwargs.pop(name, default)\n controller = fetch('controller', None)\n locator = fetch('locator', None)\n current_version = fetch('current_version', None)\n view = fetch('view', DummyView())\n vistrail_variables = fetch('vistrail_variables', None)\n aliases = fetch('aliases', None)\n params = fetch('params', None)\n extra_info = fetch('extra_info', None)\n logger = fetch('logger', DummyLogController)\n sinks = fetch('sinks', None)\n reason = fetch('reason', None)\n actions = fetch('actions', None)\n done_summon_hooks = fetch('done_summon_hooks', [])\n module_executed_hook = fetch('module_executed_hook', [])\n stop_on_error = fetch('stop_on_error', True)\n parent_exec = fetch('parent_exec', None)\n job_monitor = fetch('job_monitor', None)\n\n reg = get_module_registry()\n\n if len(kwargs) > 0:\n raise VistrailsInternalError('Wrong parameters passed '\n 'to setup_pipeline: %s' % kwargs)\n\n def create_null():\n \"\"\"Creates a Null value\"\"\"\n getter = reg.get_descriptor_by_name\n descriptor = getter(basic_pkg, 'Null')\n return descriptor.module()\n \n def create_constant(param, module):\n \"\"\"Creates a Constant from a parameter spec\"\"\"\n getter = reg.get_descriptor_by_name\n desc = getter(param.identifier, param.type, param.namespace)\n constant = desc.module()\n constant.id = module.id\n# if param.evaluatedStrValue:\n# constant.setValue(param.evaluatedStrValue)\n if param.strValue != '':\n constant.setValue(param.strValue)\n else:\n constant.setValue(\n constant.translate_to_string(constant.default_value))\n return constant\n\n ### BEGIN METHOD ###\n\n# if self.debugger:\n# self.debugger.update()\n to_delete = []\n errors = {}\n\n if controller is not None:\n # Controller is none for sub_modules\n controller.validate(pipeline)\n else:\n pipeline.validate()\n\n self.resolve_aliases(pipeline, aliases)\n if vistrail_variables:\n self.resolve_variables(vistrail_variables, pipeline)\n\n self.update_params(pipeline, params)\n \n (tmp_to_persistent_module_map,\n conn_map,\n module_added_set,\n conn_added_set) = self.add_to_persistent_pipeline(pipeline)\n\n # Create the new objects\n for i in module_added_set:\n persistent_id = tmp_to_persistent_module_map[i]\n module = self._persistent_pipeline.modules[persistent_id]\n obj = self._objects[persistent_id] = module.summon()\n obj.interpreter = self\n obj.id = persistent_id\n obj.signature = module._signature\n \n # Checking if output should be stored\n if module.has_annotation_with_key('annotate_output'):\n annotate_output = module.get_annotation_by_key('annotate_output')\n #print annotate_output\n if annotate_output:\n obj.annotate_output = True\n\n for f in module.functions:\n connector = None\n if len(f.params) == 0:\n connector = ModuleConnector(create_null(), 'value',\n f.get_spec('output'))\n elif len(f.params) == 1:\n p = f.params[0]\n try:\n constant = create_constant(p, module)\n connector = ModuleConnector(constant, 'value',\n f.get_spec('output'))\n except Exception, e:\n debug.unexpected_exception(e)\n err = ModuleError(\n module,\n \"Uncaught exception creating Constant from \"\n \"%r: %s\" % (\n p.strValue,\n debug.format_exception(e)))\n errors[i] = err\n to_delete.append(obj.id)\n else:\n tupleModule = vistrails.core.interpreter.base.InternalTuple()\n tupleModule.length = len(f.params)\n for (j,p) in enumerate(f.params):\n try:\n constant = create_constant(p, module)\n constant.update()\n connector = ModuleConnector(constant, 'value',\n f.get_spec('output'))\n tupleModule.set_input_port(j, connector)\n except Exception, e:\n debug.unexpected_exception(e)\n err = ModuleError(\n module,\n \"Uncaught exception creating Constant \"\n \"from %r: %s\" % (\n p.strValue,\n debug.format_exception(e)))\n errors[i] = err\n to_delete.append(obj.id)\n connector = ModuleConnector(tupleModule, 'value',\n f.get_spec('output'))\n if connector:\n obj.set_input_port(f.name, connector, is_method=True)\n\n # Create the new connections\n for i in conn_added_set:\n persistent_id = conn_map[i]\n conn = self._persistent_pipeline.connections[persistent_id]\n src = self._objects[conn.sourceId]\n dst = self._objects[conn.destinationId]\n self.make_connection(conn, src, dst)\n\n if self.done_summon_hook:\n self.done_summon_hook(self._persistent_pipeline, self._objects)\n for callable_ in done_summon_hooks:\n callable_(self._persistent_pipeline, self._objects)\n\n tmp_id_to_module_map = {}\n for i, j in tmp_to_persistent_module_map.iteritems():\n tmp_id_to_module_map[i] = self._objects[j]\n return (tmp_id_to_module_map, tmp_to_persistent_module_map.inverse,\n module_added_set, conn_added_set, to_delete, errors)", "metadata": "root.CachedInterpreter.setup_pipeline", "header": "['class', 'CachedInterpreter', '(', 'vistrails', '.', 'core', '.', 'interpreter', '.', 'base', '.', 'BaseInterpreter', ')', ':', '___EOS___']", "index": 279 }, { "content": " def execute_pipeline(self, pipeline, tmp_id_to_module_map, \n persistent_to_tmp_id_map, **kwargs):\n def fetch(name, default):\n return kwargs.pop(name, default)\n controller = fetch('controller', None)\n locator = fetch('locator', None)\n current_version = fetch('current_version', None)\n view = fetch('view', DummyView())\n vistrail_variables = fetch('vistrail_variables', None)\n aliases = fetch('aliases', None)\n params = fetch('params', None)\n extra_info = fetch('extra_info', None)\n logger = fetch('logger', DummyLogController)\n sinks = fetch('sinks', None)\n reason = fetch('reason', None)\n actions = fetch('actions', None)\n module_executed_hook = fetch('module_executed_hook', [])\n done_summon_hooks = fetch('done_summon_hooks', [])\n clean_pipeline = fetch('clean_pipeline', False)\n stop_on_error = fetch('stop_on_error', True)\n parent_exec = fetch('parent_exec', None)\n job_monitor = fetch('job_monitor', None)\n\n if len(kwargs) > 0:\n raise VistrailsInternalError('Wrong parameters passed '\n 'to execute_pipeline: %s' % kwargs)\n\n # LOGGING SETUP\n def get_remapped_id(id):\n return persistent_to_tmp_id_map[id]\n\n logging_obj = ViewUpdatingLogController(\n logger=logger,\n view=view,\n remap_id=get_remapped_id,\n ids=pipeline.modules.keys(),\n module_executed_hook=module_executed_hook)\n\n # PARAMETER CHANGES SETUP\n parameter_changes = []\n def change_parameter(obj, name, value):\n parameter_changes.append((get_remapped_id(obj.id),\n name, value))\n def make_change_parameter(obj):\n return lambda *args: change_parameter(obj, *args)\n\n # Update **all** modules in the current pipeline\n for i, obj in tmp_id_to_module_map.iteritems():\n obj.in_pipeline = True # set flag to indicate in pipeline\n obj.logging = logging_obj\n obj.change_parameter = make_change_parameter(obj)\n \n # Update object pipeline information\n obj.moduleInfo['locator'] = locator\n obj.moduleInfo['version'] = current_version\n obj.moduleInfo['moduleId'] = i\n obj.moduleInfo['pipeline'] = pipeline\n obj.moduleInfo['controller'] = controller\n # extract job monitor from controller if this is the top level\n if controller:\n obj.moduleInfo['job_monitor'] = controller.jobMonitor\n else:\n obj.moduleInfo['job_monitor'] = job_monitor\n\n if extra_info is not None:\n obj.moduleInfo['extra_info'] = extra_info\n if reason is not None:\n obj.moduleInfo['reason'] = reason\n if actions is not None:\n obj.moduleInfo['actions'] = actions\n\n ## Checking 'sinks' from kwargs to resolve only requested sinks\n # Note that we accept any module in 'sinks', even if it's not actually\n # a sink in the graph\n if sinks is not None:\n persistent_sinks = [tmp_id_to_module_map[sink]\n for sink in sinks\n if sink in tmp_id_to_module_map]\n else:\n persistent_sinks = [tmp_id_to_module_map[sink]\n for sink in pipeline.graph.sinks()]\n\n self._streams.append(Generator.generators)\n Generator.generators = []\n\n # Update new sinks\n for obj in persistent_sinks:\n abort = False\n try:\n obj.update()\n continue\n except ModuleWasSuspended:\n continue\n except ModuleHadError:\n pass\n except AbortExecution:\n break\n except ModuleSuspended, ms:\n ms.module.logging.end_update(ms.module, ms,\n was_suspended=True)\n continue\n except ModuleErrors, mes:\n for me in mes.module_errors:\n me.module.logging.end_update(me.module, me)\n logging_obj.signalError(me.module, me)\n abort = abort or me.abort\n except ModuleError, me:\n me.module.logging.end_update(me.module, me, me.errorTrace)\n logging_obj.signalError(me.module, me)\n abort = me.abort\n except ModuleBreakpoint, mb:\n mb.module.logging.end_update(mb.module)\n logging_obj.signalError(mb.module, mb)\n abort = True\n if stop_on_error or abort:\n break\n\n # execute all generators until inputs are exhausted\n # this makes sure branching and multiple sinks are executed correctly\n if not logging_obj.errors and not logging_obj.suspended and \\\n Generator.generators:\n result = True\n abort = False\n while result is not None:\n try:\n for m in Generator.generators:\n result = m.generator.next()\n continue\n except AbortExecution:\n break\n except ModuleErrors, mes:\n for me in mes.module_errors:\n me.module.logging.end_update(me.module, me)\n logging_obj.signalError(me.module, me)\n abort = abort or me.abort\n except ModuleError, me:\n me.module.logging.end_update(me.module, me, me.errorTrace)\n logging_obj.signalError(me.module, me)\n abort = me.abort\n except ModuleBreakpoint, mb:\n mb.module.logging.end_update(mb.module)\n logging_obj.signalError(mb.module, mb)\n abort = True\n except Exception, e:\n debug.unexpected_exception(e)\n debug.critical(\"Exception running generators: %s\" % e,\n debug.format_exc())\n abort = True\n if stop_on_error or abort:\n break\n\n Generator.generators = self._streams.pop()\n\n if self.done_update_hook:\n self.done_update_hook(self._persistent_pipeline, self._objects)\n \n # objs, errs, and execs are mappings that use the local ids as keys,\n # as opposed to the persistent ids.\n # They are thus ideal to external consumption.\n objs = {}\n # dict([(i, self._objects[tmp_to_persistent_module_map[i]])\n # for i in tmp_to_persistent_module_map.keys()])\n errs = {}\n execs = {}\n suspends = {}\n caches = {}\n\n to_delete = []\n for (tmp_id, obj) in tmp_id_to_module_map.iteritems():\n if clean_pipeline:\n to_delete.append(obj.id)\n objs[tmp_id] = obj\n if obj.id in logging_obj.errors:\n errs[tmp_id] = logging_obj.errors[obj.id]\n if not clean_pipeline:\n to_delete.append(obj.id)\n executed = False\n if obj.id in logging_obj.executed:\n execs[tmp_id] = logging_obj.executed[obj.id]\n executed = True\n if obj.id in logging_obj.suspended:\n suspends[tmp_id] = logging_obj.suspended[obj.id]\n if not clean_pipeline:\n to_delete.append(obj.id)\n executed = True\n if obj.id in logging_obj.cached:\n caches[tmp_id] = logging_obj.cached[obj.id]\n executed = True\n if not executed:\n # these modules didn't execute\n execs[tmp_id] = False\n\n return (to_delete, objs, errs, execs, suspends, caches, parameter_changes)", "metadata": "root.CachedInterpreter.execute_pipeline", "header": "['class', 'CachedInterpreter', '(', 'vistrails', '.', 'core', '.', 'interpreter', '.', 'base', '.', 'BaseInterpreter', ')', ':', '___EOS___']", "index": 437 }, { "content": " def execute(self, pipeline, **kwargs):\n \"\"\"execute(pipeline, **kwargs):\n\n kwargs:\n controller = fetch('controller', None)\n locator = fetch('locator', None)\n current_version = fetch('current_version', None)\n view = fetch('view', DummyView())\n aliases = fetch('aliases', None)\n params = fetch('params', None)\n extra_info = fetch('extra_info', None)\n logger = fetch('logger', DummyLogController)\n reason = fetch('reason', None)\n actions = fetch('actions', None)\n done_summon_hooks = fetch('done_summon_hooks', [])\n module_executed_hook = fetch('module_executed_hook', [])\n job_monitor = fetch('job_monitor', None)\n\n Executes a pipeline using caching. Caching works by reusing\n pipelines directly. This means that there exists one global\n pipeline whose parts get executed over and over again.\n\n This function returns a triple of dictionaries (objs, errs, execs).\n\n objs is a mapping from local ids (the ids in the pipeline) to\n objects **in the persistent pipeline**. Notice, these are not\n the objects inside the passed pipeline, but the objects they\n were mapped to in the persistent pipeline.\n\n errs is a dictionary from local ids to error messages of modules\n that might have returns errors.\n\n execs is a dictionary from local ids to boolean values indicating\n whether they were executed or not.\n\n If modules have no error associated with but were not executed, it\n means they were cached.\"\"\"\n\n # Setup named arguments. We don't use named parameters so\n # that positional parameter calls fail earlier\n new_kwargs = {}\n def fetch(name, default):\n new_kwargs[name] = r = kwargs.pop(name, default)\n return r\n controller = fetch('controller', None)\n locator = fetch('locator', None)\n current_version = fetch('current_version', None)\n view = fetch('view', DummyView())\n vistrail_variables = fetch('vistrail_variables', None)\n aliases = fetch('aliases', None)\n params = fetch('params', None)\n extra_info = fetch('extra_info', None)\n logger = fetch('logger', DummyLogController)\n sinks = fetch('sinks', None)\n reason = fetch('reason', None)\n actions = fetch('actions', None)\n done_summon_hooks = fetch('done_summon_hooks', [])\n module_executed_hook = fetch('module_executed_hook', [])\n stop_on_error = fetch('stop_on_error', True)\n parent_exec = fetch('parent_exec', None)\n job_monitor = fetch('job_monitor', None)\n\n if len(kwargs) > 0:\n raise VistrailsInternalError('Wrong parameters passed '\n 'to execute: %s' % kwargs)\n self.clean_non_cacheable_modules()\n\n\n# if controller is not None:\n# vistrail = controller.vistrail\n# (pipeline, module_remap) = \\\n# core.db.io.expand_workflow(vistrail, pipeline)\n# new_kwargs['module_remap'] = module_remap\n# else:\n# vistrail = None\n\n if controller is not None:\n vistrail = controller.vistrail\n else:\n vistrail = None\n\n logger = logger.start_workflow_execution(\n parent_exec,\n vistrail, pipeline, current_version)\n new_kwargs['logger'] = logger\n self.annotate_workflow_execution(logger, reason, aliases, params)\n\n res = self.setup_pipeline(pipeline, **new_kwargs)\n modules_added = res[2]\n conns_added = res[3]\n to_delete = res[4]\n errors = res[5]\n if len(errors) == 0:\n res = self.execute_pipeline(pipeline, *(res[:2]), **new_kwargs)\n else:\n res = (to_delete, res[0], errors, {}, {}, {}, [])\n for (i, error) in errors.iteritems():\n view.set_module_error(i, error.msg, error.errorTrace)\n self.finalize_pipeline(pipeline, *(res[:-1]), **new_kwargs)\n\n result = InstanceObject(objects=res[1],\n errors=res[2],\n executed=res[3],\n suspended=res[4],\n parameter_changes=res[6],\n modules_added=modules_added,\n conns_added=conns_added)\n\n logger.finish_workflow_execution(result.errors, suspended=result.suspended)\n\n return result", "metadata": "root.CachedInterpreter.execute", "header": "['class', 'CachedInterpreter', '(', 'vistrails', '.', 'core', '.', 'interpreter', '.', 'base', '.', 'BaseInterpreter', ')', ':', '___EOS___']", "index": 657 }, { "content": " @staticmethod\n def cleanup():\n if CachedInterpreter.__instance:\n CachedInterpreter.__instance.clear()\n objs = gc.collect()", "metadata": "root.CachedInterpreter.cleanup", "header": "['class', 'CachedInterpreter', '(', 'vistrails', '.', 'core', '.', 'interpreter', '.', 'base', '.', 'BaseInterpreter', ')', ':', '___EOS___']", "index": 877 }, { "content": " @staticmethod\n def flush():\n if CachedInterpreter.__instance:\n CachedInterpreter.__instance.clear()\n CachedInterpreter.__instance.create()\n objs = gc.collect()", "metadata": "root.CachedInterpreter.flush", "header": "['class', 'CachedInterpreter', '(', 'vistrails', '.', 'core', '.', 'interpreter', '.', 'base', '.', 'BaseInterpreter', ')', ':', '___EOS___']", "index": 883 } ]

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[ { "content": "# ##########################################\n# Version 1.0\n# Author: Brian Torres-Gil\n#\n# About this script:\n# Triggered when a WildFire syslog indicates a file has been analyzed by WildFire.\n# This script retrieves the WildFire data relating to that syslog from the WildFire\n# cloud service API.\n#\n# Script's actions and warning messages are logged in $SPLUNK_HOME/var/log/splunk/python.log\n############################################\n############################################\n# How to Use this script\n# The script must be provided 3 things to retrieve an WildFire log from the cloud:\n# 1. An API Key. This is found at https://wildfire.paloaltonetworks.com\n# under 'My Account'.\n# 2. The Serial Number of the device that produced the alert. This is in the syslog.\n# 3. The ID of the report. This is in the syslog.\n###########################################\n###########################################\n\n# if you want to go through a proxy, e.g., HTTP_PROXY={squid:'2.2.2.2'}\nHTTP_PROXY = {}\n\n#########################################################\n# Do NOT modify anything below this line unless you are\n# certain of the ramifications of the changes\n#########################################################\n\nimport sys\nimport os\nimport urllib # for urllib.urlencode()\nimport urllib2 # make http requests to PAN firewall\nimport traceback\nimport argparse\n\nlibpath = os.path.dirname(os.path.abspath(__file__))\nsys.path[:0] = [os.path.join(libpath, 'lib')]\nimport common\nimport environment\n\nlogger = common.logging.getLogger().getChild('retrieveWildFireReport')\n#logger.setLevel(common.logging.INFO)\n\nif environment.run_by_splunk():\n try:\n import splunk.Intersplunk # so you can interact with Splunk\n import splunk.entity as entity # for splunk config info\n except Exception as e:\n # Handle exception to produce logs to python.log\n logger.error(\"Error during import\")\n logger.error(traceback.format_exc())\n raise e\n\n\n\n\n\n\n\n\n\n\nif __name__ == \"__main__\":\n if environment.run_by_splunk():\n main_splunk()\n else:\n main_cli()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def get_cli_args():\n \"\"\"Used if this script is run from the CLI\n\n This function is not used if script run from Splunk searchbar\n \"\"\"\n # Setup the argument parser\n parser = argparse.ArgumentParser(description=\"Download a Wildfire Report using the Wildfire API\")\n #parser.add_argument('-v', '--verbose', action='store_true', help=\"Verbose\")\n parser.add_argument('apikey', help=\"API Key from https://wildfire.paloaltonetworks.com\")\n parser.add_argument('serial', help=\"Serial number of the device which produced the WildFire syslog\")\n parser.add_argument('reportid', help=\"ID of the report in the WildFire cloud\")\n options = parser.parse_args()\n return options", "metadata": "root.get_cli_args", "header": "['module', '___EOS___']", "index": 55 }, { "content": "def createOpener():\n \"\"\"Create a generic opener for http\n\n This is particularly helpful when there is a proxy server in line\n \"\"\"\n # Thanks to: http://www.decalage.info/en/python/urllib2noproxy\n proxy_handler = urllib2.ProxyHandler(HTTP_PROXY)\n opener = urllib2.build_opener(proxy_handler)\n urllib2.install_opener(opener)\n return opener", "metadata": "root.createOpener", "header": "['module', '___EOS___']", "index": 69 }, { "content": "def retrieveWildFireData(apikey, serial, reportid):\n # Create a urllib2 opener\n opener = createOpener()\n # URL for WildFire cloud API\n wfUrl = 'https://wildfire.paloaltonetworks.com/publicapi/report'\n # Prepare the variables as POST data\n post_data = urllib.urlencode({\n 'apikey': apikey,\n 'device_id': serial,\n 'report_id': reportid,\n })\n # Create a request object\n wfReq = urllib2.Request(wfUrl)\n # Make the request to the WildFire cloud\n result = opener.open(wfReq, post_data)\n return result", "metadata": "root.retrieveWildFireData", "header": "['module', '___EOS___']", "index": 81 }, { "content": "def main_cli():\n # Get command line arguments\n options = get_cli_args()\n #debug = options.verbose\n #logger = common.logging.getLogger()\n #common.logging.basicConfig(level=common.logging.INFO)\n #if debug:\n # logger.setLevel(common.logging.DEBUG)\n # logger.info(\"Verbose logging enabled\")\n # Grab WildFire data\n data = retrieveWildFireData(options.apikey, options.serial, options.reportid)\n # Parse XML for fields\n print data.read()\n sys.exit(0)", "metadata": "root.main_cli", "header": "['module', '___EOS___']", "index": 99 }, { "content": "def main_splunk():\n # Get arguments passed to command on Splunk searchbar\n args, kwargs = splunk.Intersplunk.getKeywordsAndOptions()\n\n debug = common.check_debug(kwargs)\n\n # Setup the logger. $SPLUNK_HOME/var/log/splunk/python.log\n logger = common.logging.getLogger()\n if debug:\n logger.setLevel(common.logging.DEBUG)\n\n # Results contains the data from the search results and settings contains\n # the sessionKey that we can use to talk to splunk\n logger.debug(\"Getting search results and settings from Splunk\")\n results, unused1, settings = splunk.Intersplunk.getOrganizedResults()\n\n # Get the sessionKey\n sessionKey = settings['sessionKey']\n # If there are logs to act on, get the Panorama user and password from Splunk using the sessionKey\n if len(results) < 0:\n logger.debug(\"No search results. Nothing to do.\")\n splunk.Intersplunk.outputResults(results)\n sys.exit(0)\n\n logger.debug(\"Getting Wildfire APIKey from encrypted store\")\n wf_apikey = common.get_wildfire_apikey(sessionKey)\n\n # Get a wildfire report for each row\n logger.debug(\"Getting Wildfire reports for %s search results\" % len(results))\n for idx, result in enumerate(results):\n # Check to see if the result has the necessary fields\n if 'serial_number' in result and 'report_id' in result:\n logger.debug(\"Getting Wildfire report for result # %s with report_id: %s\" % (idx, result['report_id']))\n try:\n # Get the report\n wfReportXml = retrieveWildFireData(wf_apikey, result['serial_number'],\n result['report_id']).read().strip()\n # Add the report id to the XML for correlation to the original WildFire log from the firewall\n wfReportXml = wfReportXml.replace(\"</version>\", \"</version>\\n<id>\" + result['report_id'] + \"</id>\", 1)\n result['wildfire_report'] = wfReportXml\n except:\n logger.warn(\"Error retrieving WildFire report for report id: %s\" % result['report_id'])\n # Log the result row in case of an exception\n logger.info(\"Log with error: %s\" % result)\n stack = traceback.format_exc()\n # Log the stack information\n logger.warn(stack)\n else:\n logger.debug(\"Required fields missing from result # %s.\"\n \"Expected the following fields: serial_number, report_id\" % idx)\n # output the complete results sent back to splunk\n splunk.Intersplunk.outputResults(results)", "metadata": "root.main_splunk", "header": "['module', '___EOS___']", "index": 115 } ]

[ { "span": "import splunk.entity as entity ", "start_line": 47, "start_column": 8, "end_line": 47, "end_column": 38 } ]

[]

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[ { "content": "# Copyright 2015 Open Connectome Project (http://openconnecto.me)\n# \n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n# \n# http://www.apache.org/licenses/LICENSE-2.0\n# \n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport argparse\nimport sys\nimport os\nimport numpy as np\nimport urllib, urllib2\nimport cStringIO\nfrom contextlib import closing\nimport zlib\n\nsys.path += [os.path.abspath('../django')]\nimport OCP.settings\nos.environ['DJANGO_SETTINGS_MODULE'] = 'OCP.settings'\nfrom django.conf import settings\n\nimport django\ndjango.setup()\n\nfrom cube import Cube\nimport ocpcarest\nimport ocplib\nimport ocpcaproj\nimport ocpcadb\n\n\"\"\" Determine a histogram from an image stack \"\"\"\n\n \n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class ImgHist():\n \"\"\" Get the histogram for an image dataset by getting individual histograms for cube aligned cutouts, then summing \"\"\" \n \n", "metadata": "root.ImgHist", "header": "['module', '___EOS___']", "index": 39 }, { "content": " def __init__(self, token, channel, res, bits):\n self.token = token\n self.channel = channel\n self.res = int(res)\n self.numbins = 2**int(bits)", "metadata": "root.ImgHist.__init__", "header": "['class', 'ImgHist', '(', ')', ':', '___EOS___']", "index": 42 }, { "content": " def getHist(self):\n\n with closing (ocpcaproj.OCPCAProjectsDB()) as projdb:\n proj = projdb.loadToken(self.token)\n \n with closing (ocpcadb.OCPCADB(proj)) as db:\n ch = proj.getChannelObj(self.channel)\n\n # Get the source database sizes\n [[ximagesz, yimagesz, zimagesz], timerange] = proj.datasetcfg.imageSize(self.res)\n [xcubedim, ycubedim, zcubedim] = cubedim = proj.datasetcfg.getCubeDims()[self.res]\n [xoffset, yoffset, zoffset] = proj.datasetcfg.getOffset()[self.res]\n\n # Set the limits for iteration on the number of cubes in each dimension\n xlimit = (ximagesz-1) / xcubedim + 1\n ylimit = (yimagesz-1) / ycubedim + 1\n zlimit = (zimagesz-1) / zcubedim + 1\n\n hist_sum = np.zeros(self.numbins, dtype=np.uint32) \n \n # sum the histograms \n for z in range(zlimit):\n for y in range(ylimit):\n for x in range(xlimit):\n\n # cutout the data for the cube \n data = db.cutout(ch, [ x*xcubedim, y*ycubedim, z*zcubedim], cubedim, self.res ).data\n \n # compute the histogram and store it \n (hist, bins) = np.histogram(data[data > 0], bins=self.numbins, range=(0,self.numbins))\n hist_sum = np.add( hist_sum, hist )\n print \"Processed cube {} {} {}\".format(x,y,z)\n \n return (hist_sum, bins)", "metadata": "root.ImgHist.getHist", "header": "['class', 'ImgHist', '(', ')', ':', '___EOS___']", "index": 48 } ]

[ { "span": "import argparse", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 15 }, { "span": "import urllib, urllib2", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 22 }, { "span": "import cStringIO", "start_line": 19, "start_column": 0, "end_line": 19, "end_column": 16 }, { "span": "import zlib", "start_line": 21, "start_column": 0, "end_line": 21, "end_column": 11 }, { "span": "import OCP.settings", "start_line": 24, "start_column": 0, "end_line": 24, "end_column": 19 }, { "span": "from django.conf import settings", "start_line": 26, "start_column": 0, "end_line": 26, "end_column": 32 }, { "span": "from cube import Cube", "start_line": 31, "start_column": 0, "end_line": 31, "end_column": 21 }, { "span": "import ocpcarest", "start_line": 32, "start_column": 0, "end_line": 32, "end_column": 16 }, { "span": "import ocplib", "start_line": 33, "start_column": 0, "end_line": 33, "end_column": 13 } ]

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[ { "content": "class BaseColor(object):\n \"\"\"Represents a color.\n\n Colors have some amount of color data (determined by the colorspace, but\n generally three channels' worth), an opacity, and an arbitrary number of\n other user-defined channels. Channels' values are floats ranging from 0.0\n to 1.0.\n\n Particular colorspaces, and conversions between them, are implemented as\n subclasses of this class.\n\n All colors are immutable. Convenience methods exist to make simple\n modifications, which will return a new color.\n \"\"\"\n\n # TODO maybe i should just store the opacity like IM does, and only convert\n # when exposing to python :| and call it alpha.\n\n COLOR_WHEEL = [\n \"red\", \"orange\", \"yellow\", \"chartreuse\",\n \"green\", \"seafoam\", \"cyan\", \"azure\",\n \"blue\", \"violet\", \"magenta\", \"rose\",\n ]\n\n\n\n # TODO call me alpha\n\n # TODO does this work??\n\n ### Conversions\n\n\n\n ### Constructors\n\n\n\n\n\n\n\n ### Special methods\n\n", "metadata": "root.BaseColor", "header": "['module', '___EOS___']", "index": 26 }, { "content": " def __init__(self):\n raise TypeError(\"Can't instantiate BaseColor; use a subclass or other constructor\")", "metadata": "root.BaseColor.__init__", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 50 }, { "content": " @property\n def description(self):\n \"\"\"Return a human-friendly description of this color as a string.\"\"\"\n hslself = self.hsl()\n\n # Do lightness first, because it can short-circuit for near-black\n # and near-white\n l = hslself.lightness\n if l <= 0:\n return \"black\"\n elif l < 0.025:\n return \"blackish\"\n elif l < 0.1:\n shade = \"very dark\"\n elif l < 0.2:\n shade = \"kinda dark\"\n elif l < 0.3:\n shade = \"dark\"\n elif l < 0.4:\n shade = \"\"\n elif l < 0.6:\n shade = \"bright\"\n elif l < 0.7:\n shade = \"powder\"\n elif l < 0.8:\n shade = \"pastel\"\n elif l < 0.9:\n shade = \"light\"\n elif l < 0.975:\n shade = \"pale\"\n elif l < 1:\n return \"whitish\"\n else:\n return \"white\"\n\n # Saturation, another potential short-circuit, and another\n # adjective to be stuck on a color name\n s = hslself.saturation\n if s < 0.015:\n if shade:\n return shade + \" gray\"\n else:\n return \"gray\"\n elif s < 0.05:\n sat = \"grayish\"\n elif s < 0.15:\n sat = \"very dim\"\n elif s < 0.25:\n sat = \"dim\"\n elif s < 0.4:\n sat = \"dusty\"\n elif s < 0.6:\n sat = \"\"\n elif s < 0.75:\n sat = \"deep\"\n elif s < 0.85:\n sat = \"bold\"\n elif s < 0.95:\n sat = \"intense\"\n else:\n sat = \"pure\"\n\n # Compute the hue description. Find the name from the list of\n # colors above, treating each as the *middle* of a section, and\n # treat colors roughly halfway between X and Y as \"X-Y\"\n h = hslself.hue\n colors = len(self.COLOR_WHEEL)\n wheel_position = (h * colors + 0.5 / colors) % colors\n wheel_index = int(wheel_position)\n\n hue = self.COLOR_WHEEL[wheel_index]\n if wheel_position - wheel_index > 0.5:\n hue += \"-\" + self.COLOR_WHEEL[(wheel_index + 1) % colors]\n\n color = hue\n if sat:\n color = sat + \" \" + color\n if shade:\n color = shade + \" \" + color\n\n # TODO opacity description?\n return color", "metadata": "root.BaseColor.description", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 53 }, { "content": " @property\n def opacity(self):\n return self._opacity", "metadata": "root.BaseColor.opacity", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 137 }, { "content": " @property\n def extra_channels(self):\n return self._extra_channels", "metadata": "root.BaseColor.extra_channels", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 142 }, { "content": " def rgb(self):\n raise NotImplementedError", "metadata": "root.BaseColor.rgb", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 148 }, { "content": " def hsl(self):\n raise NotImplementedError", "metadata": "root.BaseColor.hsl", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 151 }, { "content": " @classmethod\n def parse(cls, name):\n \"\"\"Parse a color specification.\n\n Supports a whole buncha formats.\n \"\"\"\n # TODO i don't like that this is tied to imagemagick's implementation.\n # would rather do most of the parsing myself, well-define what those\n # formats *are*, and use some other mechanism to expose the list of\n # builtin color names. (maybe several lists, even.)\n # TODO also this always returns RGB anyway.\n\n pixel = ffi.new(\"PixelPacket *\")\n\n with magick_try() as exc:\n success = lib.QueryColorDatabase(name.encode('ascii'), pixel, exc.ptr)\n if not success:\n raise ValueError(\"Can't find a color named {0!r}\".format(name))\n\n return cls._from_pixel(pixel)", "metadata": "root.BaseColor.parse", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 156 }, { "content": " @classmethod\n def coerce(cls, value):\n if isinstance(value, cls):\n # Already an object; do nothing\n return value\n\n # Probably a name; parse it\n return cls.parse(value)", "metadata": "root.BaseColor.coerce", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 177 }, { "content": " @classmethod\n def _from_pixel(cls, pixel):\n \"\"\"Create a color from a PixelPacket.\"\"\"\n array = ffi.new(\"double[]\", 4)\n lib.sanpera_pixel_to_doubles(pixel, array)\n\n # Okay, yes, this isn't much of a classmethod. TODO?\n return RGBColor._from_c_array(array)", "metadata": "root.BaseColor._from_pixel", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 186 }, { "content": " def _populate_pixel(self, pixel):\n \"\"\"Copy values to a PixelPacket.\"\"\"\n rgb = self.rgb()\n lib.sanpera_pixel_from_doubles(pixel, rgb._array)\n # TODO extra channels?", "metadata": "root.BaseColor._populate_pixel", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 195 }, { "content": " def _populate_magick_pixel(self, pixel):\n \"\"\"Copy values to a MagickPixelPacket.\"\"\"\n rgb = self.rgb()\n lib.sanpera_magick_pixel_from_doubles(pixel, rgb._array)\n # TODO extra channels?\n # TODO imagemagick code uses:\n # SetMagickPixelPacket(image,start_color,(IndexPacket *) NULL, ptr)\n # ... why the IndexPacket? should i be using that?", "metadata": "root.BaseColor._populate_magick_pixel", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 201 }, { "content": " def __eq__(self, other):\n if not isinstance(other, BaseColor):\n return NotImplemented\n\n left = self.rgb()\n right = other.rgb()\n\n # TODO should all alpha=0 colors be equal?\n return (\n left._red == right._red and\n left._green == right._green and\n left._blue == right._blue and\n left._opacity == right._opacity)", "metadata": "root.BaseColor.__eq__", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 213 }, { "content": " def __ne__(self, other):\n return not self.__eq__(other)", "metadata": "root.BaseColor.__ne__", "header": "['class', 'BaseColor', '(', 'object', ')', ':', '___EOS___']", "index": 227 }, { "content": "class RGBColor(BaseColor):\n\n\n\n\n\n\n\n\n # TODO are these even useful without cython? they're just python doubles\n # now. (nice to stay immutable, but other ways to do that)\n\n\n\n\n", "metadata": "root.RGBColor", "header": "['module', '___EOS___']", "index": 231 }, { "content": " def __init__(self, red, green, blue, opacity=1.0, _array=None):\n self._red = red\n self._green = green\n self._blue = blue\n self._opacity = opacity\n self._extra_channels = ()\n\n if _array is None:\n self._array = ffi.new(\"double[]\", [red, green, blue, opacity])\n else:\n self._array = _array", "metadata": "root.RGBColor.__init__", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 232 }, { "content": " @classmethod\n def _from_c_array(cls, array):\n return cls(*array, _array=array)", "metadata": "root.RGBColor._from_c_array", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 244 }, { "content": " def __repr__(self):\n return \"<RGBColor {0:0.3f} red, {1:0.3f} green, {2:0.3f} blue ({3}) {4:0.1f}% opacity>\".format(\n self._red, self._green, self._blue, self.description, self._opacity * 100)", "metadata": "root.RGBColor.__repr__", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 248 }, { "content": " def __mul__(self, factor):\n # TODO does this semantic make sense? it's just what IM's fx syntax\n # does\n # TODO this is only defined for RGB. move it to base and just make it\n # convert to RGB, then back to the original class...?\n\n # TODO extra channels??\n return RGBColor(\n self._red * factor,\n self._green * factor,\n self._blue * factor,\n self._opacity)", "metadata": "root.RGBColor.__mul__", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 252 }, { "content": " def __rmul__(self, factor):\n return self.__mul__(factor)", "metadata": "root.RGBColor.__rmul__", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 265 }, { "content": " def __add__(self, other):\n # TODO this is also what IM's fx syntax does; maybe a little less\n # sensible than multiplication even.\n # TODO type check\n # TODO extra channels\n return RGBColor(\n self._red + other,\n self._green + other,\n self._blue + other,\n self._opacity)", "metadata": "root.RGBColor.__add__", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 268 }, { "content": " def __sub__(self, other):\n return self + (-other)", "metadata": "root.RGBColor.__sub__", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 279 }, { "content": " def clamped(self):\n return RGBColor(\n _clamp(self._red),\n _clamp(self._green),\n _clamp(self._blue),\n _clamp(self._opacity))\n # TODO every color type\n # TODO extra channels (clamp them??)", "metadata": "root.RGBColor.clamped", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 282 }, { "content": " @property\n def red(self):\n return self._red", "metadata": "root.RGBColor.red", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 293 }, { "content": " @property\n def green(self):\n return self._green", "metadata": "root.RGBColor.green", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 297 }, { "content": " @property\n def blue(self):\n return self._blue", "metadata": "root.RGBColor.blue", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 301 }, { "content": " @property\n def alpha(self):\n return self._opacity", "metadata": "root.RGBColor.alpha", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 305 }, { "content": " def rgb(self):\n return self", "metadata": "root.RGBColor.rgb", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 309 }, { "content": " def hsl(self):\n hue, light, sat = colorsys.rgb_to_hls(\n _clamp(self._red), _clamp(self._green), _clamp(self._blue))\n # TODO extra channels\n return HSLColor(hue, sat, light, self._opacity)", "metadata": "root.RGBColor.hsl", "header": "['class', 'RGBColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 312 }, { "content": "class CMYKColor(BaseColor):\n", "metadata": "root.CMYKColor", "header": "['module', '___EOS___']", "index": 319 }, { "content": " def __init__(self, cyan, magenta, yellow, black, alpha=1.0):\n self.cyan = cyan\n self.magenta = magenta\n self.yellow = yellow\n self.black = black\n self.alpha = alpha", "metadata": "root.CMYKColor.__init__", "header": "['class', 'CMYKColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 320 }, { "content": " def rgb(self):\n return RGBColor(\n 1 - self.cyan - self.black,\n 1 - self.magenta - self.black,\n 1 - self.yellow - self.black,\n self.alpha)", "metadata": "root.CMYKColor.rgb", "header": "['class', 'CMYKColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 327 }, { "content": "class HSLColor(BaseColor):\n\n\n\n\n\n", "metadata": "root.HSLColor", "header": "['module', '___EOS___']", "index": 335 }, { "content": " def __init__(self, hue, saturation, lightness, opacity=1.0):\n if hue == 1.0:\n hue = 0.0\n\n self._hue = hue\n self._saturation = saturation\n self._lightness = lightness\n self._opacity = opacity\n self._extra_channels = ()", "metadata": "root.HSLColor.__init__", "header": "['class', 'HSLColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 336 }, { "content": " def __repr__(self):\n return \"<HSLColor {0:0.3f} hue, {1:0.3f} sat, {2:0.3f} light ({3}) {4:0.1f}% opacity>\".format(\n self._hue, self._saturation, self._lightness, self.description, self._opacity * 100)", "metadata": "root.HSLColor.__repr__", "header": "['class', 'HSLColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 346 }, { "content": " @property\n def hue(self):\n return self._hue", "metadata": "root.HSLColor.hue", "header": "['class', 'HSLColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 350 }, { "content": " @property\n def saturation(self):\n return self._saturation", "metadata": "root.HSLColor.saturation", "header": "['class', 'HSLColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 354 }, { "content": " @property\n def lightness(self):\n return self._lightness", "metadata": "root.HSLColor.lightness", "header": "['class', 'HSLColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 358 }, { "content": " def rgb(self):\n r, g, b = colorsys.hls_to_rgb(self._hue, self._lightness, self._saturation)\n # TODO extra channels\n return RGBColor(r, g, b, self._opacity)", "metadata": "root.HSLColor.rgb", "header": "['class', 'HSLColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 362 }, { "content": " def hsl(self):\n return self", "metadata": "root.HSLColor.hsl", "header": "['class', 'HSLColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 367 }, { "content": "class GrayColor(BaseColor):\n\n", "metadata": "root.GrayColor", "header": "['module', '___EOS___']", "index": 371 }, { "content": " def __init__(self, value, alpha=1.0):\n self.value = value\n self.alpha = alpha", "metadata": "root.GrayColor.__init__", "header": "['class', 'GrayColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 372 }, { "content": " def rgb(self):\n return RGBColor(self.value, self.value, self.value, self.alpha)", "metadata": "root.GrayColor.rgb", "header": "['class', 'GrayColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 376 }, { "content": " def hsl(self):\n return HSLColor(0, 0, self.value, self.alpha)", "metadata": "root.GrayColor.hsl", "header": "['class', 'GrayColor', '(', 'BaseColor', ')', ':', '___EOS___']", "index": 379 } ]

[ { "span": "class RGBColor(BaseColor):", "start_line": 231, "start_column": 0, "end_line": 231, "end_column": 26 }, { "span": "class CMYKColor(BaseColor):", "start_line": 319, "start_column": 0, "end_line": 319, "end_column": 27 }, { "span": "class HSLColor(BaseColor):", "start_line": 335, "start_column": 0, "end_line": 335, "end_column": 26 }, { "span": "class GrayColor(BaseColor):", "start_line": 371, "start_column": 0, "end_line": 371, "end_column": 27 } ]

[ { "span": "def __eq__(self, other):", "start_line": 213, "start_column": 4, "end_line": 213, "end_column": 28 }, { "span": "self._red ", "start_line": 233, "start_column": 8, "end_line": 233, "end_column": 17 }, { "span": "self._green ", "start_line": 234, "start_column": 8, "end_line": 234, "end_column": 19 }, { "span": "self._blue ", "start_line": 235, "start_column": 8, "end_line": 235, "end_column": 18 }, { "span": "self._opacity ", "start_line": 236, "start_column": 8, "end_line": 236, "end_column": 21 }, { "span": "self._extra_channels ", "start_line": 237, "start_column": 8, "end_line": 237, "end_column": 28 }, { "span": "self._array ", "start_line": 240, "start_column": 12, "end_line": 240, "end_column": 23 }, { "span": "self._array ", "start_line": 242, "start_column": 12, "end_line": 242, "end_column": 23 }, { "span": "self.cyan ", "start_line": 321, "start_column": 8, "end_line": 321, "end_column": 17 }, { "span": "self.magenta ", "start_line": 322, "start_column": 8, "end_line": 322, "end_column": 20 }, { "span": "self.yellow ", "start_line": 323, "start_column": 8, "end_line": 323, "end_column": 19 }, { "span": "self.black ", "start_line": 324, "start_column": 8, "end_line": 324, "end_column": 18 }, { "span": "self.alpha ", "start_line": 325, "start_column": 8, "end_line": 325, "end_column": 18 }, { "span": "self._hue ", "start_line": 340, "start_column": 8, "end_line": 340, "end_column": 17 }, { "span": "self._saturation ", "start_line": 341, "start_column": 8, "end_line": 341, "end_column": 24 }, { "span": "self._lightness ", "start_line": 342, "start_column": 8, "end_line": 342, "end_column": 23 }, { "span": "self._opacity ", "start_line": 343, "start_column": 8, "end_line": 343, "end_column": 21 }, { "span": "self._extra_channels ", "start_line": 344, "start_column": 8, "end_line": 344, "end_column": 28 }, { "span": "self.value ", "start_line": 373, "start_column": 8, "end_line": 373, "end_column": 18 }, { "span": "self.alpha ", "start_line": 374, "start_column": 8, "end_line": 374, "end_column": 18 } ]

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[ { "content": " def test_nested_2Darray_gradient_sub(self):\n\n # This tests the\n top = Assembly()\n top.add('nest', Assembly())\n top.add('driver', SimpleDriver())\n top.nest.add('comp', ArrayComp2D())\n\n top.driver.workflow.add(['nest'])\n top.nest.driver.workflow.add(['comp'])\n top.nest.create_passthrough('comp.x')\n top.nest.create_passthrough('comp.y')\n\n top.driver.add_parameter('nest.x[0][0]', low=-100, high=100)\n top.driver.add_objective('nest.y[0][1]')\n\n # Force_fd on the assy\n options = top.nest.driver.gradient_options\n options.force_fd = True\n\n top.run()\n J = top.driver.calc_gradient()\n\n self.assertTrue('x[0][0]' in top.nest._system.vec['u']._info)\n\n assert_rel_error(self, J[0][0], 4.0, .000001)", "metadata": "root.Testcase_derivatives.test_nested_2Darray_gradient_sub", "header": "['class', 'Testcase_derivatives', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 2104 }, { "content": " def test_nondifferentiable_blocks(self):\n\n self.top = set_as_top(Assembly())\n\n exp1 = ['y1 = 2.0*x1**2',\n 'y2 = 3.0*x1']\n deriv1 = ['dy1_dx1 = 4.0*x1',\n 'dy2_dx1 = 3.0']\n\n exp2 = ['y1 = 0.5*x1']\n deriv2 = ['dy1_dx1 = 0.5']\n\n exp3 = ['y1 = 3.5*x1']\n deriv3 = ['dy1_dx1 = 3.5']\n\n exp4 = ['y1 = x1 + 2.0*x2',\n 'y2 = 3.0*x1',\n 'y3 = x1*x2']\n deriv4 = ['dy1_dx1 = 1.0',\n 'dy1_dx2 = 2.0',\n 'dy2_dx1 = 3.0',\n 'dy2_dx2 = 0.0',\n 'dy3_dx1 = x2',\n 'dy3_dx2 = x1']\n\n exp5 = ['y1 = x1 + 3.0*x2 + 2.0*x3']\n deriv5 = ['dy1_dx1 = 1.0',\n 'dy1_dx2 = 3.0',\n 'dy1_dx3 = 2.0']\n\n self.top.add('comp1', ExecComp(exp1))\n self.top.add('comp2', ExecComp(exp2))\n self.top.add('comp3', ExecComp(exp3))\n self.top.add('comp4', ExecCompWithDerivatives(exp4, deriv4))\n self.top.add('comp5', ExecComp(exp5))\n\n self.top.driver.workflow.add(['comp1', 'comp2', 'comp3', 'comp4', 'comp5'])\n\n self.top.connect('comp1.y1', 'comp2.x1')\n self.top.connect('comp1.y2', 'comp3.x1')\n self.top.connect('comp2.y1', 'comp4.x1')\n self.top.connect('comp3.y1', 'comp4.x2')\n self.top.connect('comp4.y1', 'comp5.x1')\n self.top.connect('comp4.y2', 'comp5.x2')\n self.top.connect('comp4.y3', 'comp5.x3')\n\n # Case 1 - differentiable (comp4)\n\n self.top.comp1.x1 = 2.0\n self.top.run()\n\n J = self.top.driver.calc_gradient(inputs=['comp1.x1'],\n outputs=['comp5.y1'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 313.0, .001)\n\n J = self.top.driver.calc_gradient(inputs=['comp1.x1'],\n outputs=['comp5.y1'],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 313.0, .001)\n\n comp_list = simple_node_iter(self.top.driver.workflow._system.subsystems()[1]._nodes)\n self.assertTrue(len(comp_list) == 3)\n self.assertTrue('comp1' in comp_list)\n self.assertTrue('comp2' in comp_list)\n self.assertTrue('comp3' in comp_list)\n comp_list = simple_node_iter(self.top.driver.workflow._system.subsystems()[3]._nodes)\n self.assertTrue(len(comp_list) == 1)\n self.assertTrue('comp5' in comp_list)\n\n # Case 2 - differentiable (none)\n\n self.top.replace('comp4', ExecComp(exp4))\n\n self.top.comp1.x1 = 2.0\n self.top.run()\n J = self.top.driver.calc_gradient(inputs=['comp1.x1'],\n outputs=['comp5.y1'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 313.0, .001)\n\n J = self.top.driver.calc_gradient(inputs=['comp1.x1'],\n outputs=['comp5.y1'],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 313.0, .001)\n\n comp_list = simple_node_iter(self.top.driver.workflow._system.subsystems()[1]._nodes)\n self.assertTrue(len(comp_list) == 5)\n self.assertTrue('comp1' in comp_list)\n self.assertTrue('comp2' in comp_list)\n self.assertTrue('comp3' in comp_list)\n self.assertTrue('comp4' in comp_list)\n self.assertTrue('comp5' in comp_list)\n\n\n # Piggyback testing of the is_variable_local function -- make sure it\n # pokes through opaque systems.\n system = self.top.driver.workflow._system\n self.assertTrue(system.is_variable_local('comp2.y1') is True)\n\n # Case 3 - differentiable (comp5)\n\n self.top.replace('comp5', ExecCompWithDerivatives(exp5, deriv5))\n\n self.top.comp1.x1 = 2.0\n self.top.run()\n J = self.top.driver.calc_gradient(inputs=['comp1.x1'],\n outputs=['comp5.y1'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 313.0, .001)\n\n J = self.top.driver.calc_gradient(inputs=['comp1.x1'],\n outputs=['comp5.y1'],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 313.0, .001)\n\n comp_list = simple_node_iter(self.top.driver.workflow._system.subsystems()[1]._nodes)\n self.assertTrue(len(comp_list) == 4)\n self.assertTrue('comp1' in comp_list)\n self.assertTrue('comp2' in comp_list)\n self.assertTrue('comp3' in comp_list)\n self.assertTrue('comp4' in comp_list)\n\n # Case 4 - differentiable (comp1, comp3, comp5)\n\n self.top.replace('comp1', ExecCompWithDerivatives(exp1, deriv1))\n self.top.replace('comp3', ExecCompWithDerivatives(exp3, deriv3))\n\n self.top.comp1.x1 = 2.0\n self.top.run()\n J = self.top.driver.calc_gradient(inputs=['comp1.x1'],\n outputs=['comp5.y1'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 313.0, .001)\n\n J = self.top.driver.calc_gradient(inputs=['comp1.x1'],\n outputs=['comp5.y1'],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 313.0, .001)\n\n comp_list = simple_node_iter(self.top.driver.workflow._system.subsystems()[3]._nodes)\n self.assertTrue(len(comp_list) == 2)\n self.assertTrue('comp2' in comp_list)\n self.assertTrue('comp4' in comp_list)\n\n\n # Put everything in a single pseudo-assy, and run fd.\n J = self.top.driver.calc_gradient(inputs=['comp1.x1'],\n outputs=['comp5.y1'],\n mode='fd')\n assert_rel_error(self, J[0, 0], 313.0, .001)", "metadata": "root.Testcase_derivatives.test_nondifferentiable_blocks", "header": "['class', 'Testcase_derivatives', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 2519 }, { "content": " def test_paramgroup_with_scaler(self):\n\n top = set_as_top(Assembly())\n top.add('comp1', GComp_noD())\n top.add('driver', SimpleDriver())\n top.driver.workflow.add(['comp1'])\n\n top.driver.add_parameter(['comp1.x1', 'comp1.x2'], low=-100, high=100, scaler=2.0)\n top.driver.add_objective('comp1.y1')\n top.run()\n\n J = top.driver.calc_gradient(mode='forward')\n assert_rel_error(self, J[0, 0], 12.0*2.0, .001)\n\n # Piggyback testing of the is_variable_local function -- make sure it\n # pokes through opaque systems.\n system = top.driver.workflow._system\n self.assertTrue(system.is_variable_local('comp1.x1') is True)\n self.assertTrue(system.is_variable_local('comp1.x2') is True)", "metadata": "root.Testcase_derivatives.test_paramgroup_with_scaler", "header": "['class', 'Testcase_derivatives', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 2878 }, { "content": " def test_missing_derivs_assume_zero(self):\n self.top = set_as_top(Assembly())\n\n self.top.add('driver', SimpleDriver())\n self.top.add('dis2', SimpleCompMissingDeriv())\n self.top.dis2.missing_deriv_policy = 'assume_zero'\n\n self.top.driver.add_objective('(dis2.y)**2')\n self.top.driver.add_parameter('dis2.x', low=-10.0, high=10.0)\n self.top.driver.add_constraint('dis2.miss_out < 24.0')\n\n self.top.run()\n\n J = self.top.driver.calc_gradient(mode='forward')\n assert_rel_error(self, J[0, 0], 24.0, .001)\n assert_rel_error(self, J[1, 0], 0.0, .001)\n\n # This will error unless we ignore missing derivs\n derivs = self.top.check_gradient(name='dis2', stream=None)\n self.assertTrue('dis2.y / dis2.x' in derivs[2])\n\n self.top.driver.run_iteration()\n J = self.top.driver.calc_gradient(inputs=['dis2.miss_in'],\n mode='fd')\n assert_rel_error(self, J[0, 0], 0.0, .001)\n assert_rel_error(self, J[1, 0], 0.0, .001)", "metadata": "root.Testcase_derivatives.test_missing_derivs_assume_zero", "header": "['class', 'Testcase_derivatives', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 2932 } ]

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[ { "content": "from __future__ import absolute_import, division, print_function, with_statement\n\nimport socket\nimport os\nimport signal\nimport sys\nimport random\nimport time\nimport threading\nimport logging\nimport requests\nimport multiprocessing\nimport time\nfrom bson.objectid import ObjectId\n\nfrom turbo.test.util import unittest\n\nfrom turbo import app\nfrom turbo.conf import app_config\nfrom turbo import register\n\napp_config.app_name = 'app_test'\napp_config.web_application_setting = {\n 'xsrf_cookies': False,\n 'cookie_secret': 'adasfd' \n}\n\n#logger = logging.getLogger()\n\n\n\n\n\nPID = None\nURL = None\n\n\n\n\n\n\n\n\n\n\n\nif __name__ == '__main__':\n unittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class HomeHandler(app.BaseHandler):\n\n\n", "metadata": "root.HomeHandler", "header": "['module', '___EOS___']", "index": 30 }, { "content": " def get(self):\n assert self.is_ajax() == False\n self.write('get')", "metadata": "root.HomeHandler.get", "header": "['class', 'HomeHandler', '(', 'app', '.', 'BaseHandler', ')', ':', '___EOS___']", "index": 32 }, { "content": " def post(self):\n self.write('post')", "metadata": "root.HomeHandler.post", "header": "['class', 'HomeHandler', '(', 'app', '.', 'BaseHandler', ')', ':', '___EOS___']", "index": 36 }, { "content": " def put(self):\n self.write('put')", "metadata": "root.HomeHandler.put", "header": "['class', 'HomeHandler', '(', 'app', '.', 'BaseHandler', ')', ':', '___EOS___']", "index": 39 }, { "content": "class ApiHandler(app.BaseHandler):\n\n _get_required_params = [\n ('skip', int, 0),\n ('limit', int, 20),\n ]\n\n _get_params = {\n 'need': [\n ('action', None),\n ],\n 'option': [\n ('who', basestring, 'python'),\n ('bool', bool, False),\n ('int', int, 0),\n ('float', float, 0),\n ('objectid', ObjectId, None),\n ('list', list, []),\n ]\n }\n\n _post_required_params = [\n ('skip', int, 0),\n ('limit', int, 20),\n ]\n\n _post_params = {\n 'need': [\n ('who', basestring),\n ],\n }\n\n\n\n\n\n", "metadata": "root.ApiHandler", "header": "['module', '___EOS___']", "index": 43 }, { "content": " def GET(self):\n self._params = self.parameter\n\n assert self._params['skip'] == 0\n assert self._params['limit'] == 20\n assert self._params['who'] == 'python'\n assert self._params['action'] is None\n assert self._params['list'] == []\n assert self.is_ajax() == True\n\n self._data = {\n 'value': self._params['who']\n }", "metadata": "root.ApiHandler.GET", "header": "['class', 'ApiHandler', '(', 'app', '.', 'BaseHandler', ')', ':', '___EOS___']", "index": 75 }, { "content": " def POST(self):\n self._params = self.parameter\n print(self._params)\n\n assert self._params['skip'] == 0\n assert self._params['limit'] == 10\n\n self._data = {\n 'value': self._params['who']\n }", "metadata": "root.ApiHandler.POST", "header": "['class', 'ApiHandler', '(', 'app', '.', 'BaseHandler', ')', ':', '___EOS___']", "index": 89 }, { "content": " def PUT(self):\n self._data = {\n 'api': {\n 'put': 'value'\n }\n }", "metadata": "root.ApiHandler.PUT", "header": "['class', 'ApiHandler', '(', 'app', '.', 'BaseHandler', ')', ':', '___EOS___']", "index": 101 }, { "content": " def DELETE(self):\n raise Exception('value error')", "metadata": "root.ApiHandler.DELETE", "header": "['class', 'ApiHandler', '(', 'app', '.', 'BaseHandler', ')', ':', '___EOS___']", "index": 108 }, { "content": " def wo_json(self, data):\n self.write(self.json_encode(data, indent=4))", "metadata": "root.ApiHandler.wo_json", "header": "['class', 'ApiHandler', '(', 'app', '.', 'BaseHandler', ')', ':', '___EOS___']", "index": 111 }, { "content": "def run_server(port):\n register.register_url('/', HomeHandler)\n register.register_url('', HomeHandler)\n register.register_url('/api', ApiHandler)\n app.start(port)", "metadata": "root.run_server", "header": "['module', '___EOS___']", "index": 117 }, { "content": "def is_used(port):\n sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM)\n if sock.connect_ex(('localhost', port)) == 0:\n return True\n\n return False", "metadata": "root.is_used", "header": "['module', '___EOS___']", "index": 124 }, { "content": "def setUpModule():\n port = 8888\n while True:\n if not is_used(port):\n break\n port += 1\n \n server = multiprocessing.Process(target=run_server, args=(port,))\n server.start()\n global PID, URL\n URL = 'http://localhost:%s'%port\n PID = server.pid", "metadata": "root.setUpModule", "header": "['module', '___EOS___']", "index": 132 }, { "content": "def tearDownModule():\n os.kill(PID, signal.SIGKILL)", "metadata": "root.tearDownModule", "header": "['module', '___EOS___']", "index": 146 }, { "content": "class AppTest(unittest.TestCase):\n\n\n\n\n\n\n\n", "metadata": "root.AppTest", "header": "['module', '___EOS___']", "index": 150 }, { "content": " def setUp(self):\n global URL \n self.home_url = URL \n self.api_url = URL + '/api'", "metadata": "root.AppTest.setUp", "header": "['class', 'AppTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 152 }, { "content": " def test_get(self):\n resp = requests.get(self.home_url)\n self.assertEqual(resp.status_code, 200)", "metadata": "root.AppTest.test_get", "header": "['class', 'AppTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 157 }, { "content": " def test_post(self):\n resp = requests.post(self.home_url)\n self.assertEqual(resp.status_code, 200)", "metadata": "root.AppTest.test_post", "header": "['class', 'AppTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 161 }, { "content": " def test_get_api(self):\n resp = requests.get(self.api_url, headers={'X-Requested-With': 'XMLHttpRequest'})\n self.assertEqual(resp.status_code, 200)\n self.assertEqual(resp.json()['res']['value'], 'python')", "metadata": "root.AppTest.test_get_api", "header": "['class', 'AppTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 165 }, { "content": " def test_delete_api(self):\n resp = requests.delete(self.api_url, headers={'X-Requested-With': 'XMLHttpRequest'})\n self.assertEqual(resp.status_code, 200)\n self.assertEqual(resp.json()['msg'], 'Unknown Error')", "metadata": "root.AppTest.test_delete_api", "header": "['class', 'AppTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 170 }, { "content": " def test_post_api(self):\n resp = requests.post(self.api_url, headers={'X-Requested-With': 'XMLHttpRequest'}, data={'limit': 10, 'who': 'ruby'})\n self.assertEqual(resp.status_code, 200)\n self.assertEqual(resp.json()['res']['value'], 'ruby')", "metadata": "root.AppTest.test_post_api", "header": "['class', 'AppTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 175 }, { "content": " def test_404(self):\n resp = requests.get(self.home_url+'/hello')\n self.assertTrue(resp.content.find('404') != -1)", "metadata": "root.AppTest.test_404", "header": "['class', 'AppTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 180 }, { "content": " def test_context(self):\n \"\"\"TODO\"\"\"\n pass", "metadata": "root.AppTest.test_context", "header": "['class', 'AppTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 184 } ]

[ { "span": "import sys", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 10 }, { "span": "import random", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 13 }, { "span": "import time", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 11 }, { "span": "import threading", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 16 }, { "span": "import logging", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 14 }, { "span": "import time", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 11 } ]

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[ { "content": "# -*- test-case-name: twisted.conch.test.test_checkers -*-\n# Copyright (c) 2001-2010 Twisted Matrix Laboratories.\n# See LICENSE for details.\n\n\"\"\"\nProvide L{ICredentialsChecker} implementations to be used in Conch protocols.\n\"\"\"\n\nimport os, base64, binascii, errno\ntry:\n import pwd\nexcept ImportError:\n pwd = None\nelse:\n import crypt\n\ntry:\n # get this from http://www.twistedmatrix.com/users/z3p/files/pyshadow-0.2.tar.gz\n import shadow\nexcept:\n shadow = None\n\ntry:\n from twisted.cred import pamauth\nexcept ImportError:\n pamauth = None\n\nfrom zope.interface import implements, providedBy\n\nfrom twisted.conch import error\nfrom twisted.conch.ssh import keys\nfrom twisted.cred.checkers import ICredentialsChecker\nfrom twisted.cred.credentials import IUsernamePassword, ISSHPrivateKey\nfrom twisted.cred.error import UnauthorizedLogin, UnhandledCredentials\nfrom twisted.internet import defer\nfrom twisted.python import failure, reflect, log\nfrom twisted.python.util import runAsEffectiveUser\nfrom twisted.python.filepath import FilePath\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def verifyCryptedPassword(crypted, pw):\n if crypted[0] == '$': # md5_crypt encrypted\n salt = '$1$' + crypted.split('$')[2]\n else:\n salt = crypted[:2]\n return crypt.crypt(pw, salt) == crypted", "metadata": "root.verifyCryptedPassword", "header": "['module', '___EOS___']", "index": 40 }, { "content": "class UNIXPasswordDatabase:\n credentialInterfaces = IUsernamePassword,\n implements(ICredentialsChecker)\n", "metadata": "root.UNIXPasswordDatabase", "header": "['module', '___EOS___']", "index": 47 }, { "content": " def requestAvatarId(self, credentials):\n if pwd:\n try:\n cryptedPass = pwd.getpwnam(credentials.username)[1]\n except KeyError:\n return defer.fail(UnauthorizedLogin(\"invalid username\"))\n else:\n if cryptedPass not in ['*', 'x'] and \\\n verifyCryptedPassword(cryptedPass, credentials.password):\n return defer.succeed(credentials.username)\n if shadow:\n gid = os.getegid()\n uid = os.geteuid()\n os.setegid(0)\n os.seteuid(0)\n try:\n shadowPass = shadow.getspnam(credentials.username)[1]\n except KeyError:\n os.setegid(gid)\n os.seteuid(uid)\n return defer.fail(UnauthorizedLogin(\"invalid username\"))\n os.setegid(gid)\n os.seteuid(uid)\n if verifyCryptedPassword(shadowPass, credentials.password):\n return defer.succeed(credentials.username)\n return defer.fail(UnauthorizedLogin(\"invalid password\"))\n\n return defer.fail(UnauthorizedLogin(\"unable to verify password\"))", "metadata": "root.UNIXPasswordDatabase.requestAvatarId", "header": "['class', 'UNIXPasswordDatabase', ':', '___EOS___']", "index": 51 }, { "content": "class SSHPublicKeyDatabase:\n \"\"\"\n Checker that authenticates SSH public keys, based on public keys listed in\n authorized_keys and authorized_keys2 files in user .ssh/ directories.\n \"\"\"\n\n credentialInterfaces = ISSHPrivateKey,\n implements(ICredentialsChecker)\n\n\n\n\n\n\n", "metadata": "root.SSHPublicKeyDatabase", "header": "['module', '___EOS___']", "index": 81 }, { "content": " def requestAvatarId(self, credentials):\n d = defer.maybeDeferred(self.checkKey, credentials)\n d.addCallback(self._cbRequestAvatarId, credentials)\n d.addErrback(self._ebRequestAvatarId)\n return d", "metadata": "root.SSHPublicKeyDatabase.requestAvatarId", "header": "['class', 'SSHPublicKeyDatabase', ':', '___EOS___']", "index": 90 }, { "content": " def _cbRequestAvatarId(self, validKey, credentials):\n \"\"\"\n Check whether the credentials themselves are valid, now that we know\n if the key matches the user.\n\n @param validKey: A boolean indicating whether or not the public key\n matches a key in the user's authorized_keys file.\n\n @param credentials: The credentials offered by the user.\n @type credentials: L{ISSHPrivateKey} provider\n\n @raise UnauthorizedLogin: (as a failure) if the key does not match the\n user in C{credentials}. Also raised if the user provides an invalid\n signature.\n\n @raise ValidPublicKey: (as a failure) if the key matches the user but\n the credentials do not include a signature. See\n L{error.ValidPublicKey} for more information.\n\n @return: The user's username, if authentication was successful.\n \"\"\"\n if not validKey:\n return failure.Failure(UnauthorizedLogin(\"invalid key\"))\n if not credentials.signature:\n return failure.Failure(error.ValidPublicKey())\n else:\n try:\n pubKey = keys.Key.fromString(credentials.blob)\n if pubKey.verify(credentials.signature, credentials.sigData):\n return credentials.username\n except: # any error should be treated as a failed login\n log.err()\n return failure.Failure(UnauthorizedLogin('error while verifying key'))\n return failure.Failure(UnauthorizedLogin(\"unable to verify key\"))", "metadata": "root.SSHPublicKeyDatabase._cbRequestAvatarId", "header": "['class', 'SSHPublicKeyDatabase', ':', '___EOS___']", "index": 96 }, { "content": " def getAuthorizedKeysFiles(self, credentials):\n \"\"\"\n Return a list of L{FilePath} instances for I{authorized_keys} files\n which might contain information about authorized keys for the given\n credentials.\n\n On OpenSSH servers, the default location of the file containing the\n list of authorized public keys is\n U{$HOME/.ssh/authorized_keys<http://www.openbsd.org/cgi-bin/man.cgi?query=sshd_config>}.\n\n I{$HOME/.ssh/authorized_keys2} is also returned, though it has been\n U{deprecated by OpenSSH since\n 2001<http://marc.info/?m=100508718416162>}.\n\n @return: A list of L{FilePath} instances to files with the authorized keys.\n \"\"\"\n pwent = pwd.getpwnam(credentials.username)\n root = FilePath(pwent.pw_dir).child('.ssh')\n files = ['authorized_keys', 'authorized_keys2']\n return [root.child(f) for f in files]", "metadata": "root.SSHPublicKeyDatabase.getAuthorizedKeysFiles", "header": "['class', 'SSHPublicKeyDatabase', ':', '___EOS___']", "index": 132 }, { "content": " def checkKey(self, credentials):\n \"\"\"\n Retrieve files containing authorized keys and check against user\n credentials.\n \"\"\"\n uid, gid = os.geteuid(), os.getegid()\n ouid, ogid = pwd.getpwnam(credentials.username)[2:4]\n for filepath in self.getAuthorizedKeysFiles(credentials):\n if not filepath.exists():\n continue\n try:\n lines = filepath.open()\n except IOError, e:\n if e.errno == errno.EACCES:\n lines = runAsEffectiveUser(ouid, ogid, filepath.open)\n else:\n raise\n for l in lines:\n l2 = l.split()\n if len(l2) < 2:\n continue\n try:\n if base64.decodestring(l2[1]) == credentials.blob:\n return True\n except binascii.Error:\n continue\n return False", "metadata": "root.SSHPublicKeyDatabase.checkKey", "header": "['class', 'SSHPublicKeyDatabase', ':', '___EOS___']", "index": 154 }, { "content": " def _ebRequestAvatarId(self, f):\n if not f.check(UnauthorizedLogin):\n log.msg(f)\n return failure.Failure(UnauthorizedLogin(\"unable to get avatar id\"))\n return f", "metadata": "root.SSHPublicKeyDatabase._ebRequestAvatarId", "header": "['class', 'SSHPublicKeyDatabase', ':', '___EOS___']", "index": 182 }, { "content": "class SSHProtocolChecker:\n \"\"\"\n SSHProtocolChecker is a checker that requires multiple authentications\n to succeed. To add a checker, call my registerChecker method with\n the checker and the interface.\n\n After each successful authenticate, I call my areDone method with the\n avatar id. To get a list of the successful credentials for an avatar id,\n use C{SSHProcotolChecker.successfulCredentials[avatarId]}. If L{areDone}\n returns True, the authentication has succeeded.\n \"\"\"\n\n implements(ICredentialsChecker)\n\n\n\n credentialInterfaces = property(get_credentialInterfaces)\n\n\n\n", "metadata": "root.SSHProtocolChecker", "header": "['module', '___EOS___']", "index": 189 }, { "content": " def __init__(self):\n self.checkers = {}\n self.successfulCredentials = {}", "metadata": "root.SSHProtocolChecker.__init__", "header": "['class', 'SSHProtocolChecker', ':', '___EOS___']", "index": 203 }, { "content": " def get_credentialInterfaces(self):\n return self.checkers.keys()", "metadata": "root.SSHProtocolChecker.get_credentialInterfaces", "header": "['class', 'SSHProtocolChecker', ':', '___EOS___']", "index": 207 }, { "content": " def registerChecker(self, checker, *credentialInterfaces):\n if not credentialInterfaces:\n credentialInterfaces = checker.credentialInterfaces\n for credentialInterface in credentialInterfaces:\n self.checkers[credentialInterface] = checker", "metadata": "root.SSHProtocolChecker.registerChecker", "header": "['class', 'SSHProtocolChecker', ':', '___EOS___']", "index": 212 }, { "content": " def requestAvatarId(self, credentials):\n \"\"\"\n Part of the L{ICredentialsChecker} interface. Called by a portal with\n some credentials to check if they'll authenticate a user. We check the\n interfaces that the credentials provide against our list of acceptable\n checkers. If one of them matches, we ask that checker to verify the\n credentials. If they're valid, we call our L{_cbGoodAuthentication}\n method to continue.\n\n @param credentials: the credentials the L{Portal} wants us to verify\n \"\"\"\n ifac = providedBy(credentials)\n for i in ifac:\n c = self.checkers.get(i)\n if c is not None:\n d = defer.maybeDeferred(c.requestAvatarId, credentials)\n return d.addCallback(self._cbGoodAuthentication,\n credentials)\n return defer.fail(UnhandledCredentials(\"No checker for %s\" % \\\n ', '.join(map(reflect.qual, ifac))))", "metadata": "root.SSHProtocolChecker.requestAvatarId", "header": "['class', 'SSHProtocolChecker', ':', '___EOS___']", "index": 218 }, { "content": " def _cbGoodAuthentication(self, avatarId, credentials):\n \"\"\"\n Called if a checker has verified the credentials. We call our\n L{areDone} method to see if the whole of the successful authentications\n are enough. If they are, we return the avatar ID returned by the first\n checker.\n \"\"\"\n if avatarId not in self.successfulCredentials:\n self.successfulCredentials[avatarId] = []\n self.successfulCredentials[avatarId].append(credentials)\n if self.areDone(avatarId):\n del self.successfulCredentials[avatarId]\n return avatarId\n else:\n raise error.NotEnoughAuthentication()", "metadata": "root.SSHProtocolChecker._cbGoodAuthentication", "header": "['class', 'SSHProtocolChecker', ':', '___EOS___']", "index": 239 }, { "content": " def areDone(self, avatarId):\n \"\"\"\n Override to determine if the authentication is finished for a given\n avatarId.\n\n @param avatarId: the avatar returned by the first checker. For\n this checker to function correctly, all the checkers must\n return the same avatar ID.\n \"\"\"\n return True", "metadata": "root.SSHProtocolChecker.areDone", "header": "['class', 'SSHProtocolChecker', ':', '___EOS___']", "index": 255 } ]

[ { "span": "from twisted.cred import pamauth", "start_line": 23, "start_column": 4, "end_line": 23, "end_column": 36 } ]

[]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "class AffordanceItem(PolyDataItem):\n\n COPY_MODE_ALL = 0 # copies all properties from affordance descriptions\n COPY_MODE_SKIP_LOCAL = 1 # skips properties that should keep local values such as visibility\n LOCAL_PROPERTY_NAMES = ('Visible')\n\n\n\n\n\n\n\n\n\n", "metadata": "root.AffordanceItem", "header": "['module', '___EOS___']", "index": 18 }, { "content": " def __init__(self, name, polyData, view):\n PolyDataItem.__init__(self, name, polyData, view)\n self.params = {}\n self.addProperty('uuid', newUUID(), attributes=om.PropertyAttributes(hidden=True))\n self.addProperty('Collision Enabled', True)\n self.addProperty('Origin', [0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0], attributes=om.PropertyAttributes(hidden=True))\n self.addProperty('Camera Texture Enabled', False)\n\n self.properties.setPropertyIndex('Collision Enabled', 0)\n self.setProperty('Icon', om.Icons.Hammer)", "metadata": "root.AffordanceItem.__init__", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 24 }, { "content": " def getPose(self):\n childFrame = self.getChildFrame()\n t = childFrame.transform if childFrame else vtk.vtkTransform()\n return transformUtils.poseFromTransform(t)", "metadata": "root.AffordanceItem.getPose", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 35 }, { "content": " def getDescription(self):\n d = OrderedDict()\n d['classname'] = type(self).__name__\n d.update(self.properties._properties)\n d['pose'] = self.getPose()\n return d", "metadata": "root.AffordanceItem.getDescription", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 40 }, { "content": " def _onPropertyChanged(self, propertySet, propertyName):\n PolyDataItem._onPropertyChanged(self, propertySet, propertyName)\n if propertyName == 'Origin':\n self.updateGeometryFromProperties()", "metadata": "root.AffordanceItem._onPropertyChanged", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 47 }, { "content": " def updateGeometryFromProperties():\n pass", "metadata": "root.AffordanceItem.updateGeometryFromProperties", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 52 }, { "content": " def setPolyData(self, polyData):\n\n if polyData.GetNumberOfPoints():\n originPose = self.getProperty('Origin')\n pos, quat = originPose[:3], originPose[3:]\n t = transformUtils.transformFromPose(pos, quat)\n polyData = filterUtils.transformPolyData(polyData, t.GetLinearInverse())\n PolyDataItem.setPolyData(self, polyData)", "metadata": "root.AffordanceItem.setPolyData", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 55 }, { "content": " def repositionFromDescription(self, desc):\n position, quat = desc['pose']\n t = transformUtils.transformFromPose(position, quat)\n self.getChildFrame().copyFrame(t)", "metadata": "root.AffordanceItem.repositionFromDescription", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 64 }, { "content": " def loadDescription(self, desc, copyMode=COPY_MODE_ALL):\n self.syncProperties(desc, copyMode)\n self.repositionFromDescription(desc)\n self._renderAllViews()", "metadata": "root.AffordanceItem.loadDescription", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 69 }, { "content": " def syncProperties(self, desc, copyMode=COPY_MODE_ALL):\n for propertyName, propertyValue in desc.iteritems():\n if copyMode == self.COPY_MODE_SKIP_LOCAL:\n if propertyName in self.LOCAL_PROPERTY_NAMES:\n continue\n\n if self.hasProperty(propertyName) and (self.getProperty(propertyName) != propertyValue):\n #print 'syncing property %s: %r' % (propertyName, propertyValue)\n self.setProperty(propertyName, propertyValue)", "metadata": "root.AffordanceItem.syncProperties", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 74 }, { "content": " def onRemoveFromObjectModel(self):\n PolyDataItem.onRemoveFromObjectModel(self)", "metadata": "root.AffordanceItem.onRemoveFromObjectModel", "header": "['class', 'AffordanceItem', '(', 'PolyDataItem', ')', ':', '___EOS___']", "index": 84 }, { "content": "class BoxAffordanceItem(AffordanceItem):\n\n\n", "metadata": "root.BoxAffordanceItem", "header": "['module', '___EOS___']", "index": 88 }, { "content": " def __init__(self, name, view):\n AffordanceItem.__init__(self, name, vtk.vtkPolyData(), view)\n self.addProperty('Dimensions', [0.25, 0.25, 0.25], attributes=om.PropertyAttributes(decimals=3, singleStep=0.01, minimum=0.0, maximum=1e4))\n self.addProperty('Subdivisions', 0, attributes=om.PropertyAttributes(minimum=0, maximum=1000))\n self.properties.setPropertyIndex('Dimensions', 0)\n self.properties.setPropertyIndex('Subdivisions', 1)\n self.updateGeometryFromProperties()", "metadata": "root.BoxAffordanceItem.__init__", "header": "['class', 'BoxAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 90 }, { "content": " def updateGeometryFromProperties(self):\n d = DebugData()\n d.addCube(self.getProperty('Dimensions'), (0,0,0), subdivisions=self.getProperty('Subdivisions'))\n self.setPolyData(d.getPolyData())", "metadata": "root.BoxAffordanceItem.updateGeometryFromProperties", "header": "['class', 'BoxAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 98 }, { "content": " def _onPropertyChanged(self, propertySet, propertyName):\n AffordanceItem._onPropertyChanged(self, propertySet, propertyName)\n\n if propertyName in ('Dimensions', 'Subdivisions'):\n self.updateGeometryFromProperties()", "metadata": "root.BoxAffordanceItem._onPropertyChanged", "header": "['class', 'BoxAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 103 }, { "content": "class SphereAffordanceItem(AffordanceItem):\n\n\n", "metadata": "root.SphereAffordanceItem", "header": "['module', '___EOS___']", "index": 110 }, { "content": " def __init__(self, name, view):\n AffordanceItem.__init__(self, name, vtk.vtkPolyData(), view)\n self.addProperty('Radius', 0.15, attributes=om.PropertyAttributes(decimals=3, singleStep=0.01, minimum=0.0, maximum=1e4))\n self.properties.setPropertyIndex('Radius', 0)\n self.updateGeometryFromProperties()", "metadata": "root.SphereAffordanceItem.__init__", "header": "['class', 'SphereAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 112 }, { "content": " def updateGeometryFromProperties(self):\n d = DebugData()\n d.addSphere((0,0,0), self.getProperty('Radius'))\n self.setPolyData(d.getPolyData())", "metadata": "root.SphereAffordanceItem.updateGeometryFromProperties", "header": "['class', 'SphereAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 118 }, { "content": " def _onPropertyChanged(self, propertySet, propertyName):\n AffordanceItem._onPropertyChanged(self, propertySet, propertyName)\n\n if propertyName == 'Radius':\n self.updateGeometryFromProperties()", "metadata": "root.SphereAffordanceItem._onPropertyChanged", "header": "['class', 'SphereAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 123 }, { "content": "class CylinderAffordanceItem(AffordanceItem):\n\n\n", "metadata": "root.CylinderAffordanceItem", "header": "['module', '___EOS___']", "index": 130 }, { "content": " def __init__(self, name, view):\n AffordanceItem.__init__(self, name, vtk.vtkPolyData(), view)\n self.addProperty('Radius', 0.03, attributes=om.PropertyAttributes(decimals=3, singleStep=0.01, minimum=0.0, maximum=1e4))\n self.addProperty('Length', 0.5, attributes=om.PropertyAttributes(decimals=3, singleStep=0.01, minimum=0.0, maximum=1e4))\n self.properties.setPropertyIndex('Radius', 0)\n self.properties.setPropertyIndex('Length', 1)\n self.updateGeometryFromProperties()", "metadata": "root.CylinderAffordanceItem.__init__", "header": "['class', 'CylinderAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 132 }, { "content": " def updateGeometryFromProperties(self):\n d = DebugData()\n length = self.getProperty('Length')\n d.addCylinder(center=(0,0,0), axis=(0,0,1), length=self.getProperty('Length'), radius=self.getProperty('Radius'))\n self.setPolyData(d.getPolyData())", "metadata": "root.CylinderAffordanceItem.updateGeometryFromProperties", "header": "['class', 'CylinderAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 140 }, { "content": " def _onPropertyChanged(self, propertySet, propertyName):\n AffordanceItem._onPropertyChanged(self, propertySet, propertyName)\n\n if propertyName in ('Length', 'Radius'):\n self.updateGeometryFromProperties()", "metadata": "root.CylinderAffordanceItem._onPropertyChanged", "header": "['class', 'CylinderAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 146 }, { "content": "class CapsuleAffordanceItem(AffordanceItem):\n\n\n", "metadata": "root.CapsuleAffordanceItem", "header": "['module', '___EOS___']", "index": 153 }, { "content": " def __init__(self, name, view):\n AffordanceItem.__init__(self, name, vtk.vtkPolyData(), view)\n self.addProperty('Radius', 0.03, attributes=om.PropertyAttributes(decimals=3, singleStep=0.01, minimum=0.0, maximum=1e4))\n self.addProperty('Length', 0.5, attributes=om.PropertyAttributes(decimals=3, singleStep=0.01, minimum=0.0, maximum=1e4))\n self.properties.setPropertyIndex('Radius', 0)\n self.properties.setPropertyIndex('Length', 1)\n self.updateGeometryFromProperties()", "metadata": "root.CapsuleAffordanceItem.__init__", "header": "['class', 'CapsuleAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 155 }, { "content": " def updateGeometryFromProperties(self):\n d = DebugData()\n length = self.getProperty('Length')\n d.addCapsule(center=(0,0,0), axis=(0,0,1), length=self.getProperty('Length'), radius=self.getProperty('Radius'))\n self.setPolyData(d.getPolyData())", "metadata": "root.CapsuleAffordanceItem.updateGeometryFromProperties", "header": "['class', 'CapsuleAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 163 }, { "content": " def _onPropertyChanged(self, propertySet, propertyName):\n AffordanceItem._onPropertyChanged(self, propertySet, propertyName)\n\n if propertyName in ('Length', 'Radius'):\n self.updateGeometryFromProperties()", "metadata": "root.CapsuleAffordanceItem._onPropertyChanged", "header": "['class', 'CapsuleAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 169 }, { "content": "class CapsuleRingAffordanceItem(AffordanceItem):\n\n\n", "metadata": "root.CapsuleRingAffordanceItem", "header": "['module', '___EOS___']", "index": 176 }, { "content": " def __init__(self, name, view):\n AffordanceItem.__init__(self, name, vtk.vtkPolyData(), view)\n self.setProperty('Collision Enabled', False)\n self.addProperty('Radius', 0.15, attributes=om.PropertyAttributes(decimals=3, singleStep=0.01, minimum=0.0, maximum=1e4))\n self.addProperty('Tube Radius', 0.02, attributes=om.PropertyAttributes(decimals=3, singleStep=0.01, minimum=0.0, maximum=1e4))\n self.addProperty('Segments', 8, attributes=om.PropertyAttributes(decimals=3, singleStep=1, minimum=3, maximum=100))\n\n self.properties.setPropertyIndex('Radius', 0)\n self.properties.setPropertyIndex('Tube Radius', 1)\n self.properties.setPropertyIndex('Segments', 2)\n\n self.updateGeometryFromProperties()", "metadata": "root.CapsuleRingAffordanceItem.__init__", "header": "['class', 'CapsuleRingAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 178 }, { "content": " def updateGeometryFromProperties(self):\n radius = self.getProperty('Radius')\n circlePoints = np.linspace(0, 2*np.pi, self.getProperty('Segments')+1)\n spokes = [(0.0, np.sin(x), np.cos(x)) for x in circlePoints]\n spokes = [radius*np.array(x)/np.linalg.norm(x) for x in spokes]\n d = DebugData()\n for a, b in zip(spokes, spokes[1:]):\n d.addCapsule(center=(a+b)/2.0, axis=(b-a), length=np.linalg.norm(b-a), radius=self.getProperty('Tube Radius'))\n self.setPolyData(d.getPolyData())", "metadata": "root.CapsuleRingAffordanceItem.updateGeometryFromProperties", "header": "['class', 'CapsuleRingAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 191 }, { "content": " def _onPropertyChanged(self, propertySet, propertyName):\n AffordanceItem._onPropertyChanged(self, propertySet, propertyName)\n\n if propertyName in ('Radius', 'Tube Radius', 'Segments'):\n self.updateGeometryFromProperties()", "metadata": "root.CapsuleRingAffordanceItem._onPropertyChanged", "header": "['class', 'CapsuleRingAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 201 }, { "content": "class MeshAffordanceItem(AffordanceItem):\n\n _meshManager = None\n\n\n\n\n\n\n", "metadata": "root.MeshAffordanceItem", "header": "['module', '___EOS___']", "index": 208 }, { "content": " def __init__(self, name, view):\n AffordanceItem.__init__(self, name, vtk.vtkPolyData(), view)\n self.setProperty('Collision Enabled', False)\n self.addProperty('Filename', '')\n self.properties.setPropertyIndex('Filename', 0)\n\n # attempt to reload geometry if it is currently empty\n if self.getProperty('Filename') and not self.polyData.GetNumberOfPoints():\n self.updateGeometryFromProperties()", "metadata": "root.MeshAffordanceItem.__init__", "header": "['class', 'MeshAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 212 }, { "content": " def updateGeometryFromProperties(self):\n filename = self.getProperty('Filename')\n\n if not filename:\n polyData = vtk.vtkPolyData()\n else:\n polyData = self.getMeshManager().get(filename)\n\n if not polyData:\n\n if not os.path.isabs(filename):\n filename = os.path.join(director.getDRCBaseDir(), filename)\n\n if os.path.isfile(filename):\n polyData = ioUtils.readPolyData(filename)\n else:\n # use axes as a placeholder mesh\n d = DebugData()\n d.addFrame(vtk.vtkTransform(), scale=0.1, tubeRadius=0.005)\n polyData = d.getPolyData()\n\n self.setPolyData(polyData)", "metadata": "root.MeshAffordanceItem.updateGeometryFromProperties", "header": "['class', 'MeshAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 223 }, { "content": " @classmethod\n def getMeshManager(cls):\n if cls._meshManager is None:\n cls._meshManager = meshmanager.MeshManager()\n return cls._meshManager", "metadata": "root.MeshAffordanceItem.getMeshManager", "header": "['class', 'MeshAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 246 }, { "content": " @classmethod\n def promotePolyDataItem(cls, obj):\n parent = obj.parent()\n view = obj.views[0]\n name = obj.getProperty('Name')\n polyData = obj.polyData\n props = obj.properties._properties\n childFrame = obj.getChildFrame()\n if childFrame:\n t = transformUtils.copyFrame(childFrame.transform)\n else:\n t = vtk.vtkTransform()\n t.PostMultiply()\n t.Translate(filterUtils.computeCentroid(polyData))\n polyData = filterUtils.transformPolyData(polyData, t.GetLinearInverse())\n\n children = [c for c in obj.children() if c is not childFrame]\n\n meshId = cls.getMeshManager().add(polyData)\n\n om.removeFromObjectModel(obj)\n obj = MeshAffordanceItem(name, view)\n obj.setProperty('Filename', meshId)\n om.addToObjectModel(obj, parentObj=parent)\n frame = vis.addChildFrame(obj)\n frame.copyFrame(t)\n\n for child in children:\n om.addToObjectModel(child, parentObj=obj)\n\n obj.syncProperties(props)\n return obj", "metadata": "root.MeshAffordanceItem.promotePolyDataItem", "header": "['class', 'MeshAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 252 }, { "content": " def _onPropertyChanged(self, propertySet, propertyName):\n AffordanceItem._onPropertyChanged(self, propertySet, propertyName)\n\n if propertyName == 'Filename':\n self.updateGeometryFromProperties()", "metadata": "root.MeshAffordanceItem._onPropertyChanged", "header": "['class', 'MeshAffordanceItem', '(', 'AffordanceItem', ')', ':', '___EOS___']", "index": 286 } ]

[ { "span": "def updateGeometryFromProperties(self):", "start_line": 98, "start_column": 4, "end_line": 98, "end_column": 43 }, { "span": "def updateGeometryFromProperties(self):", "start_line": 118, "start_column": 4, "end_line": 118, "end_column": 43 }, { "span": "def updateGeometryFromProperties(self):", "start_line": 140, "start_column": 4, "end_line": 140, "end_column": 43 }, { "span": "def updateGeometryFromProperties(self):", "start_line": 163, "start_column": 4, "end_line": 163, "end_column": 43 }, { "span": "def updateGeometryFromProperties(self):", "start_line": 191, "start_column": 4, "end_line": 191, "end_column": 43 }, { "span": "def updateGeometryFromProperties(self):", "start_line": 223, "start_column": 4, "end_line": 223, "end_column": 43 } ]

[ { "span": "def updateGeometryFromProperties():", "start_line": 52, "start_column": 4, "end_line": 52, "end_column": 39 } ]

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[ { "content": "def load_python_bindings(key_bindings_manager, python_input):\n \"\"\"\n Custom key bindings.\n \"\"\"\n sidebar_visible = Condition(lambda cli: python_input.show_sidebar)\n handle = key_bindings_manager.registry.add_binding\n has_selection = HasSelection()\n vi_mode_enabled = Condition(lambda cli: python_input.vi_mode)\n\n @handle(Keys.ControlL)\n def _(event):\n \"\"\"\n Clear whole screen and render again -- also when the sidebar is visible.\n \"\"\"\n event.cli.renderer.clear()\n\n @handle(Keys.F2)\n def _(event):\n \"\"\"\n Show/hide sidebar.\n \"\"\"\n python_input.show_sidebar = not python_input.show_sidebar\n\n @handle(Keys.F3)\n def _(event):\n \"\"\"\n Select from the history.\n \"\"\"\n python_input.enter_history(event.cli)\n\n @handle(Keys.F4)\n def _(event):\n \"\"\"\n Toggle between Vi and Emacs mode.\n \"\"\"\n if event.cli.editing_mode == EditingMode.VI:\n event.cli.editing_mode = EditingMode.EMACS\n else:\n event.cli.editing_mode = EditingMode.VI\n\n\n @handle(Keys.F6)\n def _(event):\n \"\"\"\n Enable/Disable paste mode.\n \"\"\"\n python_input.paste_mode = not python_input.paste_mode\n\n @handle(Keys.Tab, filter= ~sidebar_visible & ~has_selection & TabShouldInsertWhitespaceFilter())\n def _(event):\n \"\"\"\n When tab should insert whitespace, do that instead of completion.\n \"\"\"\n event.cli.current_buffer.insert_text(' ')\n\n @handle(Keys.ControlJ, filter= ~sidebar_visible & ~has_selection &\n (ViInsertMode() | EmacsInsertMode()) &\n HasFocus(DEFAULT_BUFFER) & IsMultiline())\n def _(event):\n \"\"\"\n Behaviour of the Enter key.\n\n Auto indent after newline/Enter.\n (When not in Vi navigaton mode, and when multiline is enabled.)\n \"\"\"\n b = event.current_buffer\n empty_lines_required = python_input.accept_input_on_enter or 10000\n\n def at_the_end(b):\n \"\"\" we consider the cursor at the end when there is no text after\n the cursor, or only whitespace. \"\"\"\n text = b.document.text_after_cursor\n return text == '' or (text.isspace() and not '\\n' in text)\n\n if python_input.paste_mode:\n # In paste mode, always insert text.\n b.insert_text('\\n')\n\n elif at_the_end(b) and b.document.text.replace(' ', '').endswith(\n '\\n' * (empty_lines_required - 1)):\n if b.validate():\n # When the cursor is at the end, and we have an empty line:\n # drop the empty lines, but return the value.\n b.document = Document(\n text=b.text.rstrip(),\n cursor_position=len(b.text.rstrip()))\n\n b.accept_action.validate_and_handle(event.cli, b)\n else:\n auto_newline(b)\n\n @handle(Keys.ControlBackslash, filter= ~sidebar_visible & ~has_selection &\n (ViInsertMode() | EmacsInsertMode()) &\n HasFocus(DEFAULT_BUFFER))\n def _(event):\n r\"\"\"\n Always insert a newline when Control+\\ has been pressed.\n \"\"\"\n b = event.current_buffer\n b.insert_text('\\n')\n\n @handle(Keys.ControlD, filter=~sidebar_visible & Condition(lambda cli:\n # Only when the `confirm_exit` flag is set.\n python_input.confirm_exit and\n # And the current buffer is empty.\n cli.current_buffer_name == DEFAULT_BUFFER and\n not cli.current_buffer.text))\n def _(event):\n \"\"\"\n Override Control-D exit, to ask for confirmation.\n \"\"\"\n python_input.show_exit_confirmation = True", "metadata": "root.load_python_bindings", "header": "['module', '___EOS___']", "index": 30 } ]

[ { "span": "vi_mode_enabled ", "start_line": 37, "start_column": 4, "end_line": 37, "end_column": 19 } ]

[]

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[ { "content": "from globals import *\nfrom math import *\nimport pathfinding\nimport render_los\nimport logging\nimport random\nimport numpy\nimport tiles\nimport time\nimport maps\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def clip(number,start,end):\n\t\"\"\"Returns `number`, but makes sure it's in the range of [start..end]\"\"\"\n\treturn max(start, min(number, end))", "metadata": "root.clip", "header": "['module', '___EOS___']", "index": 11 }, { "content": "def roll(dice, sides):\n\treturn sum([random.choice(range(sides))+1 for d in range(dice)])", "metadata": "root.roll", "header": "['module', '___EOS___']", "index": 15 }, { "content": "def lerp(n1, n2, t):\n\treturn n1 + (n2-n1) * t", "metadata": "root.lerp", "header": "['module', '___EOS___']", "index": 18 }, { "content": "def distance(pos1, pos2, old=False):\n\tif old:\n\t\treturn abs(pos1[0]-pos2[0])+abs(pos1[1]-pos2[1])\n\t\t\n\tx_dist = abs(pos1[0]-pos2[0])\n\ty_dist = abs(pos1[1]-pos2[1])\n\t\n\tif x_dist > y_dist:\n\t\treturn y_dist + (x_dist-y_dist)\n\telse:\n\t\treturn x_dist + (y_dist-x_dist)", "metadata": "root.distance", "header": "['module', '___EOS___']", "index": 21 }, { "content": "def velocity(direction, speed):\n\trad = direction*(pi/180)\n\tvelocity = numpy.multiply(numpy.array([cos(rad), sin(rad)]), speed)\n\t\n\treturn [velocity[0], -velocity[1], 0]", "metadata": "root.velocity", "header": "['module', '___EOS___']", "index": 33 }, { "content": "def lerp_velocity(velocity1, velocity2, interp):\n\treturn [lerp(velocity1[0], velocity2[0], interp),\n\t lerp(velocity1[1], velocity2[1], interp),\n\t lerp(velocity1[2], velocity2[2], interp)]", "metadata": "root.lerp_velocity", "header": "['module', '___EOS___']", "index": 39 }, { "content": "def get_surface_area(structure):\n\tif 'attaches_to' in structure:\n\t\treturn structure['size']*len(structure['attaches_to'])\n\t\n\treturn structure['size']", "metadata": "root.get_surface_area", "header": "['module', '___EOS___']", "index": 44 }, { "content": "def direction_to(pos1, pos2):\n\ttheta = atan2((pos1[1]-pos2[1]), -(pos1[0]-pos2[0]))\n\t\t\n\tif theta < 0:\n\t\ttheta += 2 * pi\n\t\n\treturn theta * (180/pi)", "metadata": "root.direction_to", "header": "['module', '___EOS___']", "index": 50 }, { "content": "def create_flee_map(dijkstra):\n\tfor _x in range(dijkstra['x_range'][0],dijkstra['x_range'][1]):\n\t\tfor _y in range(dijkstra['y_range'][0],dijkstra['y_range'][1]):\n\t\t\tif dijkstra['map'][_y-dijkstra['y_range'][0],_x-dijkstra['x_range'][0]]==9999:\n\t\t\t\tcontinue\n\t\t\t\n\t\t\tdijkstra['map'][_y-dijkstra['y_range'][0],_x-dijkstra['x_range'][0]] *= -1.25", "metadata": "root.create_flee_map", "header": "['module', '___EOS___']", "index": 58 }, { "content": "def calculate_dijkstra_map(dijkstra):\n\t_map = dijkstra['map']\n\t_min_x = dijkstra['x_range'][0]\n\t_max_x = dijkstra['x_range'][1]\n\t_min_y = dijkstra['y_range'][0]\n\t_max_y = dijkstra['y_range'][1]\n\t_target_positions = [tuple(target['position']) for target in dijkstra['targets']]\n\t\n\t_i = 0\n\twhile 1==1:\n\t\t_i += 1\n\t\t_orig_map = _map.copy()\n\t\t\n\t\tfor _x in range(_min_x,_max_x):\n\t\t\tfor _y in range(_min_y,_max_y):\n\t\t\t\tif (_x,_y) in _target_positions or _orig_map[_y-_min_y,_x-_min_x] == -1:\n\t\t\t\t\t\n\t\t\t\t\tcontinue\n\t\t\t\t\n\t\t\t\t_lowest_score = 9000\n\t\t\t\t\n\t\t\t\tfor x1 in range(-1,2):\n\t\t\t\t\tx = _x+x1\n\t\t\t\t\t\n\t\t\t\t\tif 0>x or x>=_max_x:\n\t\t\t\t\t\tcontinue\n\t\t\t\t\t\n\t\t\t\t\tfor y1 in range(-1,2):\n\t\t\t\t\t\t#if (x1,y1) in [(-1,-1),(1,-1),(-1,1),(1,1)]:\n\t\t\t\t\t\t#\tcontinue\n\t\t\t\t\t\t\n\t\t\t\t\t\ty = _y+y1\n\t\t\t\t\t\t\n\t\t\t\t\t\tif 0>y or y>=_max_y or (x1,y1) == (0,0) or _orig_map[y-_min_y,x-_min_x] == -1:\n\t\t\t\t\t\t\tcontinue\n\t\t\t\t\t\t\n\t\t\t\t\t\tif _orig_map[y-_min_y,x-_min_x] < _lowest_score:\n\t\t\t\t\t\t\t_lowest_score = _orig_map[y-_min_y,x-_min_x]\n\t\t\t\t\n\t\t\t\tif _lowest_score>=0:\n\t\t\t\t\tif _orig_map[_y-_min_y,_x-_min_x]-_lowest_score>=2:\n\t\t\t\t\t\t_map[_y-_min_y,_x-_min_x] = _lowest_score+1\n\t\t\n\t\tif numpy.array_equal(_map,_orig_map):\n\t\t\tbreak", "metadata": "root.calculate_dijkstra_map", "header": "['module', '___EOS___']", "index": 66 }, { "content": "def _create_dijkstra_map(center,source_map,targets,size=(50,50),flee=False,**kvargs):\n\tif not targets:\n\t\traise Exception('No targets passed to create_dijkstra_map()')\n\t\n\t_target_positions = [tuple(target['position']) for target in targets]\n\t\n\t_min_x = clip(center[0]-(size[0]),0,MAP_SIZE[0])\n\t_max_x = clip(center[0]+(size[0]),0,MAP_SIZE[0])\n\t\n\t_min_y = clip(center[1]-(size[1]),0,MAP_SIZE[1])\n\t_max_y = clip(center[1]+(size[1]),0,MAP_SIZE[1])\n\t\n\t_stime = time.time()\n\t\n\t_map = numpy.ones((_max_y,_max_x))\n\t_orig_map = None\n\t\n\tfor target in targets:\n\t\t_map[target['position'][1]-_min_y,target['position'][0]-_min_x] = 0#target['score']\n\t\n\t_map*=30\n\t\n\tfor x in range(_min_x,_max_x):\n\t\tfor y in range(_min_y,_max_y):\t\t\t\n\t\t\tif source_map[x][y][center[2]+1]:\n\t\t\t\tif flee:\n\t\t\t\t\t_map[y-_min_y,x-_min_x] = 1\n\t\t\t\telse:\n\t\t\t\t\t_map[y-_min_y,x-_min_x] = -1\n\t\t\t\t\n\t\t\t\tcontinue\n\t\n\t_dijkstra = {'map': _map,\n\t\t'x_range': (_min_x,_max_x),\n\t\t'y_range': (_min_y,_max_y),\n\t\t'targets': targets}\n\t\n\tcalculate_dijkstra_map(_dijkstra)\n\t\n\tif flee:\n\t\tcreate_flee_map(_dijkstra)\n\t\t#_create_dijkstra_map(center,source_map,targets,size=size)\n\t\tcalculate_dijkstra_map(_dijkstra)\n\t\n\tlogging.info('Dijkstra map took: %s, size %s,%s' % (str(time.time()-_stime),(_max_x-_min_x),(_max_y-_min_y)))\n\tprint 'Dijkstra map took: %s, size %s,%s, %s' % (str(time.time()-_stime),(_max_x-_min_x),(_max_y-_min_y),0)\n\t\n\treturn _dijkstra", "metadata": "root._create_dijkstra_map", "header": "['module', '___EOS___']", "index": 112 }, { "content": "def draw_dijkstra(dijkstra,path):\n\tfor _y in range(dijkstra['y_range'][0],dijkstra['y_range'][1]):\n\t\ty = _y-dijkstra['y_range'][0]\n\t\t\n\t\tfor _x in range(dijkstra['x_range'][0],dijkstra['x_range'][1]):\n\t\t\tx = _x-dijkstra['x_range'][0]\n\t\t\t\n\t\t\t#if _x == 20:\n\t\t\t#\tcontinue\n\t\t\t\n\t\t\t#print _x,dijkstra['x_range']#,_y#,dijkstra['x_range'][1],dijkstra['y_range'][1]\n\t\t\t_score = clip(int(abs(dijkstra['map'][y,x])),0,9)\n\t\t\t#_score = int(dijkstra['map'][y,x])\n\t\t\t\n\t\t\tif (_x,_y,0) in path:\n\t\t\t\t_score = 'O '\n\t\t\telif _score == -1:\n\t\t\t\t_score = 'x '\n\t\t\telse:\n\t\t\t\t_score = '. '\n\t\t\t\t#_score = _score\n\t\t\t\n\t\t\tprint '%s' % _score,\n\t\t\n\t\tprint", "metadata": "root.draw_dijkstra", "header": "['module', '___EOS___']", "index": 161 }, { "content": "def create_dijkstra_map(center,source_map,targets,flee=False):\n\t_farthest_distance = 0\n\t\n\tfor target in targets:\n\t\t_dist = distance(center,target['position'])\n\t\n\t\tif _dist>_farthest_distance:\n\t\t\t_farthest_distance = _dist+1\n\t\n\treturn _create_dijkstra_map(center,source_map,targets,size=(_farthest_distance,_farthest_distance),flee=flee)", "metadata": "root.create_dijkstra_map", "header": "['module', '___EOS___']", "index": 187 } ]

[ { "span": "import pathfinding", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 18 }, { "span": "import render_los", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 17 }, { "span": "import tiles", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 12 }, { "span": "import maps", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 11 } ]

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[ { "content": " def test_foreign_key_1(self):\n \"Map a table with a single-column foreign key on another table\"\n stmts = [\"CREATE TABLE t2 (pc1 INTEGER PRIMARY KEY, pc2 TEXT)\",\n \"CREATE TABLE t1 (c1 INTEGER, c2 INTEGER REFERENCES t2 (pc1) \"\n \"ON UPDATE CASCADE ON DELETE RESTRICT\"\n \", c3 TEXT)\"]\n dbmap = self.to_map(stmts)\n assert dbmap['schema public']['table t1'] == self.map_fkey1", "metadata": "root.ForeignKeyToMapTestCase.test_foreign_key_1", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 352 }, { "content": " def test_foreign_key_2(self):\n \"Map a table with a single-column foreign key, table level constraint\"\n stmts = [\"CREATE TABLE t2 (pc1 INTEGER PRIMARY KEY, pc2 TEXT)\",\n \"CREATE TABLE t1 (c1 INTEGER, c2 INTEGER, c3 TEXT, \"\n \"FOREIGN KEY (c2) REFERENCES t2 (pc1)\"\n \"ON UPDATE CASCADE ON DELETE RESTRICT\"\n \")\"]\n dbmap = self.to_map(stmts)\n assert dbmap['schema public']['table t1'] == self.map_fkey1", "metadata": "root.ForeignKeyToMapTestCase.test_foreign_key_2", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 361 }, { "content": " def test_foreign_key_3(self):\n \"Map a table with a three-column foreign key\"\n stmts = [\"CREATE TABLE t2 (pc1 INTEGER, pc2 CHAR(5), pc3 DATE, \"\n \"pc4 TEXT, PRIMARY KEY (pc2, pc1, pc3))\",\n \"CREATE TABLE t1 (c1 INTEGER, c2 CHAR(5), c3 INTEGER, \"\n \"c4 DATE, c5 TEXT, \"\n \"FOREIGN KEY (c2, c3, c4) REFERENCES t2 (pc2, pc1, pc3))\"]\n dbmap = self.to_map(stmts)\n assert dbmap['schema public']['table t1'] == self.map_fkey2", "metadata": "root.ForeignKeyToMapTestCase.test_foreign_key_3", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 371 }, { "content": " def test_foreign_key_4(self):\n \"Map a table with a named, three-column foreign key\"\n stmts = [\"CREATE TABLE t2 (pc1 INTEGER, pc2 CHAR(5), pc3 DATE, \"\n \"pc4 TEXT, PRIMARY KEY (pc2, pc1, pc3))\",\n \"CREATE TABLE t1 (c1 INTEGER, c2 CHAR(5), c3 INTEGER, \"\n \"c4 DATE, c5 TEXT, \"\n \"CONSTRAINT t1_fgn_key FOREIGN KEY (c2, c3, c4) \"\n \"REFERENCES t2 (pc2, pc1, pc3))\"]\n dbmap = self.to_map(stmts)\n assert dbmap['schema public']['table t1'] == self.map_fkey3", "metadata": "root.ForeignKeyToMapTestCase.test_foreign_key_4", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 381 }, { "content": " def test_foreign_key_5(self):\n \"Map a table with a primary key and two foreign keys\"\n stmts = [\"CREATE TABLE t2 (pc1 INTEGER, pc2 CHAR(5), pc3 DATE, \"\n \"pc4 TEXT, PRIMARY KEY (pc2, pc1, pc3))\",\n \"CREATE TABLE t3 (qc1 CHAR(5) PRIMARY KEY, qc2 text)\",\n \"CREATE TABLE t1 (c1 INTEGER, c2 CHAR(5), c3 INTEGER, \"\n \"c4 DATE, c5 TEXT, \"\n \"CONSTRAINT t1_prim_key PRIMARY KEY (c1, c2), \"\n \"CONSTRAINT t1_fgn_key1 FOREIGN KEY (c2, c3, c4) \"\n \"REFERENCES t2 (pc2, pc1, pc3), \"\n \"CONSTRAINT t1_fgn_key2 FOREIGN KEY (c2) \"\n \"REFERENCES t3 (qc1))\"]\n dbmap = self.to_map(stmts)\n assert dbmap['schema public']['table t1'] == self.map_fkey4", "metadata": "root.ForeignKeyToMapTestCase.test_foreign_key_5", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 392 }, { "content": " def test_foreign_key_actions(self):\n \"Map a table with foreign key ON UPDATE/ON DELETE actions\"\n stmts = [\"CREATE TABLE t2 (pc1 INTEGER PRIMARY KEY, pc2 TEXT)\",\n \"CREATE TABLE t1 (c1 INTEGER, c2 INTEGER, c3 TEXT, \"\n \"FOREIGN KEY (c2) REFERENCES t2 (pc1) \"\n \"ON UPDATE RESTRICT ON DELETE SET NULL)\"]\n dbmap = self.to_map(stmts)\n expmap = {'columns': [{'c1': {'type': 'integer'}},\n {'c2': {'type': 'integer'}},\n {'c3': {'type': 'text'}}],\n 'foreign_keys': {'t1_c2_fkey': {\n 'columns': ['c2'], 'on_update': 'restrict',\n 'on_delete': 'set null',\n 'references': {'schema': 'public', 'table': 't2',\n 'columns': ['pc1']}}}}\n assert dbmap['schema public']['table t1'] == expmap", "metadata": "root.ForeignKeyToMapTestCase.test_foreign_key_actions", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 407 }, { "content": " def test_cross_schema_foreign_key(self):\n \"Map a table with a foreign key on a table in another schema\"\n stmts = [\"CREATE SCHEMA s1\",\n \"CREATE TABLE t2 (pc1 INTEGER PRIMARY KEY, pc2 TEXT)\",\n \"CREATE TABLE s1.t1 (c1 INTEGER PRIMARY KEY, \"\n \"c2 INTEGER REFERENCES t2 (pc1), c3 TEXT)\"]\n dbmap = self.to_map(stmts)\n t2map = {'columns': [{'pc1': {'type': 'integer', 'not_null': True}},\n {'pc2': {'type': 'text'}}],\n 'primary_key': {'t2_pkey': {'columns': ['pc1']}}}\n t1map = {'table t1': {\n 'columns': [{'c1': {'type': 'integer', 'not_null': True}},\n {'c2': {'type': 'integer'}}, {'c3': {'type': 'text'}}],\n 'primary_key': {'t1_pkey': {'columns': ['c1']}},\n 'foreign_keys': {'t1_c2_fkey': {\n 'columns': ['c2'],\n 'references': {'schema': 'public', 'table': 't2',\n 'columns': ['pc1']}}}}}\n assert dbmap['schema public']['table t2'] == t2map\n assert dbmap['schema s1'] == t1map", "metadata": "root.ForeignKeyToMapTestCase.test_cross_schema_foreign_key", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 424 }, { "content": " def test_multiple_foreign_key(self):\n \"Map a table with its primary key referenced by two others\"\n stmts = [\"CREATE TABLE t1 (pc1 integer PRIMARY KEY, pc2 text)\",\n \"CREATE TABLE t2 (c1 integer, \"\n \"c2 integer REFERENCES t1 (pc1), c3 text, \"\n \"c4 integer REFERENCES t1 (pc1))\"]\n dbmap = self.to_map(stmts)\n t1map = {'columns': [{'pc1': {'type': 'integer', 'not_null': True}},\n {'pc2': {'type': 'text'}}],\n 'primary_key': {'t1_pkey': {'columns': ['pc1']}}}\n t2map = {'columns': [{'c1': {'type': 'integer'}},\n {'c2': {'type': 'integer'}},\n {'c3': {'type': 'text'}},\n {'c4': {'type': 'integer'}}],\n 'foreign_keys': {\n 't2_c2_fkey': {\n 'columns': ['c2'],\n 'references': {'schema': 'public', 'table': 't1',\n 'columns': ['pc1']}},\n 't2_c4_fkey': {\n 'columns': ['c4'],\n 'references': {'schema': 'public', 'table': 't1',\n 'columns': ['pc1']}}}}\n assert dbmap['schema public']['table t1'] == t1map\n assert dbmap['schema public']['table t2'] == t2map", "metadata": "root.ForeignKeyToMapTestCase.test_multiple_foreign_key", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 445 }, { "content": " def test_foreign_key_dropped_column(self):\n \"Map a table with a foreign key after a column has been dropped\"\n stmts = [\"CREATE TABLE t1 (pc1 integer PRIMARY KEY, pc2 text)\",\n \"CREATE TABLE t2 (c1 integer, c2 text, c3 smallint, \"\n \"c4 integer REFERENCES t1 (pc1))\",\n \"ALTER TABLE t2 DROP COLUMN c3\"]\n dbmap = self.to_map(stmts)\n t2map = {'columns': [{'c1': {'type': 'integer'}},\n {'c2': {'type': 'text'}},\n {'c4': {'type': 'integer'}}],\n 'foreign_keys': {'t2_c4_fkey': {\n 'columns': ['c4'],\n 'references': {'schema': 'public', 'table': 't1',\n 'columns': ['pc1']}}}}\n assert dbmap['schema public']['table t2'] == t2map", "metadata": "root.ForeignKeyToMapTestCase.test_foreign_key_dropped_column", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 471 }, { "content": " def test_foreign_key_deferred(self):\n \"Check constraints deferred status\"\n stmts = [\"CREATE TABLE t2 (pc1 INTEGER PRIMARY KEY, pc2 TEXT)\",\n \"CREATE TABLE t1 (c1 INTEGER, \"\n \"c2 INTEGER REFERENCES t2 (pc1), \"\n \"c3 INTEGER REFERENCES t2 (pc1) DEFERRABLE, \"\n \"c4 INTEGER REFERENCES t2 (pc1) DEFERRABLE \"\n \"INITIALLY DEFERRED)\"]\n dbmap = self.to_map(stmts)\n fks = dbmap['schema public']['table t1']['foreign_keys']\n assert not fks['t1_c2_fkey'].get('deferrable')\n assert not fks['t1_c2_fkey'].get('deferred')\n assert fks['t1_c3_fkey'].get('deferrable')\n assert not fks['t1_c3_fkey'].get('deferred')\n assert fks['t1_c4_fkey'].get('deferrable')\n assert fks['t1_c4_fkey'].get('deferred')", "metadata": "root.ForeignKeyToMapTestCase.test_foreign_key_deferred", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 487 }, { "content": " def test_foreign_key_match(self):\n \"Map a foreign key constraint with a MATCH specification\"\n stmts = [\"CREATE TABLE t2 (pc1 INTEGER PRIMARY KEY, pc2 TEXT)\",\n \"CREATE TABLE t1 (c1 INTEGER, \"\n \"c2 INTEGER REFERENCES t2 (pc1) MATCH FULL, c3 TEXT)\"]\n dbmap = self.to_map(stmts)\n t1map = {'columns': [{'c1': {'type': 'integer'}},\n {'c2': {'type': 'integer'}},\n {'c3': {'type': 'text'}}],\n 'foreign_keys': {'t1_c2_fkey': {\n 'columns': ['c2'], 'match': 'full',\n 'references': {'schema': 'public', 'table': 't2',\n 'columns': ['pc1']}}}}\n assert dbmap['schema public']['table t1'] == t1map", "metadata": "root.ForeignKeyToMapTestCase.test_foreign_key_match", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 504 }, { "content": " def test_map_fk_comment(self):\n \"Map a foreign key with a comment\"\n stmts = [\"CREATE TABLE t2 (pc1 INTEGER PRIMARY KEY, pc2 TEXT)\",\n \"CREATE TABLE t1 (c1 INTEGER, c2 INTEGER \"\n \"CONSTRAINT cns1 REFERENCES t2 (pc1), c3 TEXT)\", COMMENT_STMT]\n dbmap = self.to_map(stmts)\n assert dbmap['schema public']['table t1']['foreign_keys']['cns1'][\n 'description'] == 'Test constraint cns1'", "metadata": "root.ForeignKeyToMapTestCase.test_map_fk_comment", "header": "['class', 'ForeignKeyToMapTestCase', '(', 'DatabaseToMapTestCase', ')', ':', '___EOS___']", "index": 519 }, { "content": " def test_add_foreign_key(self):\n \"Add a two-column foreign key to an existing table\"\n stmts = [\"CREATE TABLE t1 (c11 INTEGER NOT NULL, \"\n \"c12 INTEGER NOT NULL, c13 TEXT, PRIMARY KEY (c11, c12))\",\n \"CREATE TABLE t2 (c21 INTEGER NOT NULL, \"\n \"c22 TEXT, c23 INTEGER, c24 INTEGER, PRIMARY KEY (c21))\"]\n inmap = self.std_map()\n inmap['schema public'].update({\n 'table t1': {'columns': [\n {'c11': {'type': 'integer', 'not_null': True}},\n {'c12': {'type': 'integer', 'not_null': True}},\n {'c13': {'type': 'text'}}],\n 'primary_key': {'t1_pkey': {'columns': ['c11', 'c12']}}},\n 'table t2': {'columns': [\n {'c21': {'type': 'integer', 'not_null': True}},\n {'c22': {'type': 'text'}},\n {'c23': {'type': 'integer'}},\n {'c24': {'type': 'integer'}}],\n 'primary_key': {'t2_pkey': {'columns': ['c21']}},\n 'foreign_keys': {'t2_c23_fkey': {\n 'columns': ['c23', 'c24'],\n 'references': {'columns': ['c11', 'c12'],\n 'table': 't1'}}}}})\n sql = self.to_sql(inmap, stmts)\n self.assertEqual(fix_indent(sql[0]), \"ALTER TABLE t2 ADD CONSTRAINT \" \\\n \"t2_c23_fkey FOREIGN KEY (c23, c24) REFERENCES t1 (c11, c12)\")", "metadata": "root.ForeignKeyToSqlTestCase.test_add_foreign_key", "header": "['class', 'ForeignKeyToSqlTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 600 }, { "content": " def test_alter_foreign_key1(self):\n \"Change foreign key: referencing column\"\n stmts = [\"CREATE TABLE t1 (c11 INTEGER PRIMARY KEY NOT NULL, \"\n \"c12 INTEGER NOT NULL)\",\n \"CREATE TABLE t2 (c21 INTEGER PRIMARY KEY NOT NULL, \"\n \"c22 INTEGER, c23 INTEGER)\",\n \"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11)\"]\n inmap = self.std_map()\n inmap['schema public'].update({\n 'table t1': {'columns': [\n {'c11': {'type': 'integer', 'not_null': True}},\n {'c12': {'type': 'integer', 'not_null': True}}],\n 'primary_key': {'t1_pkey': {'columns': ['c11']}}},\n 'table t2': {'columns': [\n {'c21': {'type': 'integer', 'not_null': True}},\n {'c22': {'type': 'integer'}},\n {'c23': {'type': 'integer'}}],\n 'primary_key': {'t2_pkey': {'columns': ['c21']}},\n 'foreign_keys': {'t2_c22_fkey': {\n 'columns': ['c23'],\n 'references': {'columns': ['c11'],\n 'table': 't1'}}}}})\n sql = self.to_sql(inmap, stmts)\n self.assertEqual(2, len(sql))\n self.assertEqual(fix_indent(sql[0]),\n 'ALTER TABLE t2 DROP CONSTRAINT t2_c22_fkey')\n self.assertEqual(fix_indent(sql[1]),\n 'ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey ' \\\n 'FOREIGN KEY (c23) REFERENCES t1 (c11)')", "metadata": "root.ForeignKeyToSqlTestCase.test_alter_foreign_key1", "header": "['class', 'ForeignKeyToSqlTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 627 }, { "content": " def test_alter_foreign_key_columns(self):\n \"Change foreign key: foreign column\"\n stmts = [\"CREATE TABLE t1 (c11 INTEGER NOT NULL UNIQUE, \"\n \"c12 INTEGER NOT NULL UNIQUE)\",\n \"CREATE TABLE t2 (c21 INTEGER PRIMARY KEY NOT NULL, \"\n \"c22 INTEGER, c23 INTEGER)\",\n \"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11)\"]\n inmap = self.std_map()\n inmap['schema public'].update({\n 'table t1': {'columns': [\n {'c11': {'type': 'integer', 'not_null': True}},\n {'c12': {'type': 'integer', 'not_null': True}}],\n 'unique_constraints': {\n 't1_c11_key': {'columns': ['c11']},\n 't1_c12_key': {'columns': ['c12']}}},\n 'table t2': {'columns': [\n {'c21': {'type': 'integer', 'not_null': True}},\n {'c22': {'type': 'integer'}},\n {'c23': {'type': 'integer'}}],\n 'primary_key': {'t2_pkey': {'columns': ['c21']}},\n 'foreign_keys': {'t2_c22_fkey': {\n 'columns': ['c22'],\n 'references': {'columns': ['c12'],\n 'table': 't1'}}}}})\n sql = self.to_sql(inmap, stmts)\n self.assertEqual(2, len(sql))\n self.assertEqual(fix_indent(sql[0]),\n 'ALTER TABLE t2 DROP CONSTRAINT t2_c22_fkey')\n self.assertEqual(fix_indent(sql[1]),\n 'ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey ' \\\n 'FOREIGN KEY (c22) REFERENCES t1 (c12)')", "metadata": "root.ForeignKeyToSqlTestCase.test_alter_foreign_key_columns", "header": "['class', 'ForeignKeyToSqlTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 658 }, { "content": " @pytest.mark.xfail\n def test_alter_foreign_key_column_order(self):\n \"Change foreign key: foreign column\"\n stmts = [\"CREATE TABLE t1 (c11 INTEGER, c12 INTEGER PRIMARY KEY)\",\n \"CREATE TABLE t2 (c21 INTEGER PRIMARY KEY, c22 INTEGER)\",\n \"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c12)\"]\n inmap = self.std_map()\n inmap['schema public'].update({\n 'table t1': {'columns': [\n {'c11': {'type': 'integer'}},\n {'c1N': {'type': 'integer'}},\n {'c12': {'type': 'integer', 'not_null': True}}],\n 'primary_key': {'t1_pkey': {'columns': ['c12']}}},\n 'table t2': {'columns': [\n {'c21': {'type': 'integer', 'not_null': True}},\n {'c22': {'type': 'integer'}}],\n 'primary_key': {'t2_pkey': {'columns': ['c21']}},\n 'foreign_keys': {'t2_c22_fkey': {\n 'columns': ['c22'],\n 'references': {'columns': ['c1N'], 'table': 't1'}}}}})\n sql = self.to_sql(inmap, stmts)\n self.assertEqual(2, len(sql))\n self.assertEqual(fix_indent(sql[0]),\n 'ALTER TABLE t1 ADD COLUMN c1N integer')\n self.assertEqual(fix_indent(sql[1]),\n 'ALTER TABLE t2 DROP CONSTRAINT t2_c22_fkey')\n self.assertEqual(fix_indent(sql[2]),\n 'ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey ' \\\n 'FOREIGN KEY (c22) REFERENCES t1 (c1N)')", "metadata": "root.ForeignKeyToSqlTestCase.test_alter_foreign_key_column_order", "header": "['class', 'ForeignKeyToSqlTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 691 }, { "content": " def test_alter_foreign_key_change_actions(self):\n \"Change foreign key: foreign column\"\n stmts = [\"CREATE TABLE t1 (c11 INTEGER PRIMARY KEY)\",\n \"CREATE TABLE t2 (c21 INTEGER PRIMARY KEY, c22 INTEGER)\",\n \"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11) ON UPDATE RESTRICT\"]\n inmap = self.std_map()\n inmap['schema public'].update({\n 'table t1': {'columns': [\n {'c11': {'type': 'integer', 'not_null': True}}],\n 'primary_key': {\n 't1_pkey': {'columns': ['c11']}}},\n 'table t2': {'columns': [\n {'c21': {'type': 'integer', 'not_null': True}},\n {'c22': {'type': 'integer'}}],\n 'primary_key': {'t2_pkey': {'columns': ['c21']}},\n 'foreign_keys': {'t2_c22_fkey': {\n 'columns': ['c22'],\n 'on_update': 'cascade',\n 'references': {'columns': ['c11'], 'table': 't1'},\n }}}})\n sql = self.to_sql(inmap, stmts)\n self.assertEqual(2, len(sql))\n self.assertEqual(fix_indent(sql[0]),\n 'ALTER TABLE t2 DROP CONSTRAINT t2_c22_fkey')\n self.assertEqual(fix_indent(sql[1]),\n 'ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey ' \\\n 'FOREIGN KEY (c22) REFERENCES t1 (c11) ' \\\n 'ON UPDATE CASCADE')", "metadata": "root.ForeignKeyToSqlTestCase.test_alter_foreign_key_change_actions", "header": "['class', 'ForeignKeyToSqlTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 723 }, { "content": " def test_alter_foreign_key_add_actions(self):\n \"Change foreign key: foreign column\"\n stmts = [\"CREATE TABLE t1 (c11 INTEGER PRIMARY KEY)\",\n \"CREATE TABLE t2 (c21 INTEGER PRIMARY KEY, c22 INTEGER)\",\n \"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11)\"]\n inmap = self.std_map()\n inmap['schema public'].update({\n 'table t1': {'columns': [\n {'c11': {'type': 'integer', 'not_null': True}}],\n 'primary_key': {\n 't1_pkey': {'columns': ['c11']}}},\n 'table t2': {'columns': [\n {'c21': {'type': 'integer', 'not_null': True}},\n {'c22': {'type': 'integer'}}],\n 'primary_key': {'t2_pkey': {'columns': ['c21']}},\n 'foreign_keys': {'t2_c22_fkey': {\n 'columns': ['c22'],\n 'on_update': 'cascade',\n 'references': {'columns': ['c11'], 'table': 't1'},\n }}}})\n sql = self.to_sql(inmap, stmts)\n self.assertEqual(2, len(sql))\n self.assertEqual(fix_indent(sql[0]),\n 'ALTER TABLE t2 DROP CONSTRAINT t2_c22_fkey')\n self.assertEqual(fix_indent(sql[1]),\n 'ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey ' \\\n 'FOREIGN KEY (c22) REFERENCES t1 (c11) ' \\\n 'ON UPDATE CASCADE')", "metadata": "root.ForeignKeyToSqlTestCase.test_alter_foreign_key_add_actions", "header": "['class', 'ForeignKeyToSqlTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 753 }, { "content": " def test_alter_foreign_key_drop_actions(self):\n \"Change foreign key: foreign column\"\n stmts = [\"CREATE TABLE t1 (c11 INTEGER PRIMARY KEY)\",\n \"CREATE TABLE t2 (c21 INTEGER PRIMARY KEY, c22 INTEGER)\",\n \"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11) ON UPDATE RESTRICT\"]\n inmap = self.std_map()\n inmap['schema public'].update({\n 'table t1': {'columns': [\n {'c11': {'type': 'integer', 'not_null': True}}],\n 'primary_key': {\n 't1_pkey': {'columns': ['c11']}}},\n 'table t2': {'columns': [\n {'c21': {'type': 'integer', 'not_null': True}},\n {'c22': {'type': 'integer'}}],\n 'primary_key': {'t2_pkey': {'columns': ['c21']}},\n 'foreign_keys': {'t2_c22_fkey': {\n 'columns': ['c22'],\n 'references': {'columns': ['c11'], 'table': 't1'},\n }}}})\n sql = self.to_sql(inmap, stmts)\n self.assertEqual(2, len(sql))\n self.assertEqual(fix_indent(sql[0]),\n 'ALTER TABLE t2 DROP CONSTRAINT t2_c22_fkey')\n self.assertEqual(fix_indent(sql[1]),\n 'ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey ' \\\n 'FOREIGN KEY (c22) REFERENCES t1 (c11)')", "metadata": "root.ForeignKeyToSqlTestCase.test_alter_foreign_key_drop_actions", "header": "['class', 'ForeignKeyToSqlTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 784 }, { "content": " def test_drop_foreign_key(self):\n \"Drop a foreign key on an existing table\"\n stmts = [\"CREATE TABLE t1 (c11 INTEGER NOT NULL, c12 TEXT, \"\n \"PRIMARY KEY (c11))\",\n \"CREATE TABLE t2 (c21 INTEGER NOT NULL PRIMARY KEY, \"\n \"c22 INTEGER NOT NULL REFERENCES t1 (c11), c23 TEXT)\"]\n inmap = self.std_map()\n inmap['schema public'].update({\n 'table t1': {\n 'columns': [{'c11': {'type': 'integer', 'not_null': True}},\n {'c12': {'type': 'text'}}],\n 'primary_key': {'t1_pkey': {'columns': ['c11']}}},\n 'table t2': {\n 'columns': [{'c21': {'type': 'integer', 'not_null': True}},\n {'c22': {'type': 'integer', 'not_null': True}},\n {'c23': {'type': 'text'}}],\n 'primary_key': {'t2_pkey': {'columns': ['c21']}}}})\n sql = self.to_sql(inmap, stmts)\n assert sql == [\"ALTER TABLE t2 DROP CONSTRAINT t2_c22_fkey\"]", "metadata": "root.ForeignKeyToSqlTestCase.test_drop_foreign_key", "header": "['class', 'ForeignKeyToSqlTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 812 }, { "content": " def test_alter_unique_constraint(self):\n \"Change unique constraint column\"\n stmts = [\"CREATE TABLE t1 (c1 INTEGER NOT NULL, \"\n \"c2 INTEGER NOT NULL)\",\n \"ALTER TABLE t1 ADD CONSTRAINT t1_ukey UNIQUE (c1)\"]\n inmap = self.std_map()\n inmap['schema public'].update({'table t1': {\n 'columns': [{'c1': {'type': 'integer', 'not_null': True}},\n {'c2': {'type': 'integer', 'not_null': True}}],\n 'unique_constraints': {'t1_ukey': {'columns': ['c2'],\n 'unique': True}}}})\n sql = self.to_sql(inmap, stmts)\n self.assertEqual(2, len(sql))\n self.assertEqual(fix_indent(sql[0]),\n \"ALTER TABLE t1 DROP CONSTRAINT t1_ukey\")\n self.assertEqual(fix_indent(sql[1]),\n \"ALTER TABLE t1 ADD CONSTRAINT t1_ukey UNIQUE (c2)\")", "metadata": "root.UniqueConstraintToSqlTestCase.test_alter_unique_constraint", "header": "['class', 'UniqueConstraintToSqlTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 966 }, { "content": " def test_drop_foreign_key_comment(self):\n \"Drop the comment on an existing foreign key\"\n stmts = [\"CREATE TABLE t2 (c21 integer PRIMARY KEY, c22 text)\",\n \"CREATE TABLE t1 (c11 integer, c12 text, \"\n \"c13 integer CONSTRAINT cns1 REFERENCES t2 (c21))\",\n COMMENT_STMT]\n inmap = self.std_map()\n inmap['schema public'].update({\n 'table t2': {\n 'columns': [{'c21': {'type': 'integer', 'not_null': True}},\n {'c22': {'type': 'text'}}],\n 'primary_key': {'t2_pkey': {'columns': ['c21']}}},\n 'table t1': {\n 'columns': [{'c11': {'type': 'integer'}},\n {'c12': {'type': 'text'}},\n {'c13': {'type': 'integer'}}],\n 'foreign_keys': {'cns1': {\n 'columns': ['c13'],\n 'references': {'columns': ['c21'], 'table': 't2'}}}}})\n sql = self.to_sql(inmap, stmts)\n self.assertEqual(sql, [\"COMMENT ON CONSTRAINT cns1 ON t1 IS NULL\"])", "metadata": "root.ConstraintCommentTestCase.test_drop_foreign_key_comment", "header": "['class', 'ConstraintCommentTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 1046 }, { "content": " def test_constraint_comment_schema(self):\n \"Add comment on a constraint for a table in another schema\"\n stmts = [\"CREATE SCHEMA s1\", \"CREATE TABLE s1.t1 (c1 integer \"\n \"CONSTRAINT cns1 CHECK (c1 > 50), c2 text)\"]\n inmap = self.std_map()\n inmap.update({'schema s1': {'table t1': {\n 'columns': [{'c1': {'type': 'integer'}},\n {'c2': {'type': 'text'}}],\n 'check_constraints': {'cns1': {\n 'columns': ['c1'], 'expression': 'c1 > 50',\n 'description': 'Test constraint cns1'}}}}})\n sql = self.to_sql(inmap, stmts)\n assert sql[0] == \"COMMENT ON CONSTRAINT cns1 ON s1.t1 IS \" \\\n \"'Test constraint cns1'\"", "metadata": "root.ConstraintCommentTestCase.test_constraint_comment_schema", "header": "['class', 'ConstraintCommentTestCase', '(', 'InputMapToSqlTestCase', ')', ':', '___EOS___']", "index": 1082 } ]

[ { "span": "\"CREATE TABLE t1 (c1 INTEGER, c2 INTEGER REFERENCES t2 (pc1) \"\n \"ON UPDATE CASCADE ON DELETE RESTRICT\"\n \", c3 TEXT)\"]", "start_line": 355, "start_column": 17, "end_line": 357, "end_column": 29 }, { "span": "\"CREATE TABLE t1 (c1 INTEGER, c2 INTEGER, c3 TEXT, \"\n \"FOREIGN KEY (c2) REFERENCES t2 (pc1)\"\n \"ON UPDATE CASCADE ON DELETE RESTRICT\"\n \")\"]", "start_line": 364, "start_column": 17, "end_line": 367, "end_column": 20 }, { "span": "\"CREATE TABLE t2 (pc1 INTEGER, pc2 CHAR(5), pc3 DATE, \"\n \"pc4 TEXT, PRIMARY KEY (pc2, pc1, pc3))\",", "start_line": 373, "start_column": 17, "end_line": 374, "end_column": 57 }, { "span": "\"CREATE TABLE t1 (c1 INTEGER, c2 CHAR(5), c3 INTEGER, \"\n \"c4 DATE, c5 TEXT, \"\n \"FOREIGN KEY (c2, c3, c4) REFERENCES t2 (pc2, pc1, pc3))\"]", "start_line": 375, "start_column": 17, "end_line": 377, "end_column": 74 }, { "span": "\"CREATE TABLE t2 (pc1 INTEGER, pc2 CHAR(5), pc3 DATE, \"\n \"pc4 TEXT, PRIMARY KEY (pc2, pc1, pc3))\",", "start_line": 383, "start_column": 17, "end_line": 384, "end_column": 57 }, { "span": "\"CREATE TABLE t1 (c1 INTEGER, c2 CHAR(5), c3 INTEGER, \"\n \"c4 DATE, c5 TEXT, \"\n \"CONSTRAINT t1_fgn_key FOREIGN KEY (c2, c3, c4) \"\n \"REFERENCES t2 (pc2, pc1, pc3))\"]", "start_line": 385, "start_column": 17, "end_line": 388, "end_column": 49 }, { "span": "\"CREATE TABLE t2 (pc1 INTEGER, pc2 CHAR(5), pc3 DATE, \"\n \"pc4 TEXT, PRIMARY KEY (pc2, pc1, pc3))\",", "start_line": 394, "start_column": 17, "end_line": 395, "end_column": 57 }, { "span": "\"CREATE TABLE t1 (c1 INTEGER, c2 CHAR(5), c3 INTEGER, \"\n \"c4 DATE, c5 TEXT, \"\n \"CONSTRAINT t1_prim_key PRIMARY KEY (c1, c2), \"\n \"CONSTRAINT t1_fgn_key1 FOREIGN KEY (c2, c3, c4) \"\n \"REFERENCES t2 (pc2, pc1, pc3), \"\n \"CONSTRAINT t1_fgn_key2 FOREIGN KEY (c2) \"\n \"REFERENCES t3 (qc1))\"]", "start_line": 397, "start_column": 17, "end_line": 403, "end_column": 39 }, { "span": "\"CREATE TABLE t1 (c1 INTEGER, c2 INTEGER, c3 TEXT, \"\n \"FOREIGN KEY (c2) REFERENCES t2 (pc1) \"\n \"ON UPDATE RESTRICT ON DELETE SET NULL)\"]", "start_line": 410, "start_column": 17, "end_line": 412, "end_column": 57 }, { "span": "\"CREATE TABLE s1.t1 (c1 INTEGER PRIMARY KEY, \"\n \"c2 INTEGER REFERENCES t2 (pc1), c3 TEXT)\"]", "start_line": 428, "start_column": 17, "end_line": 429, "end_column": 59 }, { "span": "\"CREATE TABLE t2 (c1 integer, \"\n \"c2 integer REFERENCES t1 (pc1), c3 text, \"\n \"c4 integer REFERENCES t1 (pc1))\"]", "start_line": 448, "start_column": 17, "end_line": 450, "end_column": 50 }, { "span": "\"CREATE TABLE t2 (c1 integer, c2 text, c3 smallint, \"\n \"c4 integer REFERENCES t1 (pc1))\",", "start_line": 474, "start_column": 17, "end_line": 475, "end_column": 50 }, { "span": "\"CREATE TABLE t1 (c1 INTEGER, \"\n \"c2 INTEGER REFERENCES t2 (pc1), \"\n \"c3 INTEGER REFERENCES t2 (pc1) DEFERRABLE, \"\n \"c4 INTEGER REFERENCES t2 (pc1) DEFERRABLE \"\n \"INITIALLY DEFERRED)\"]", "start_line": 490, "start_column": 17, "end_line": 494, "end_column": 38 }, { "span": "\"CREATE TABLE t1 (c1 INTEGER, \"\n \"c2 INTEGER REFERENCES t2 (pc1) MATCH FULL, c3 TEXT)\"]", "start_line": 507, "start_column": 17, "end_line": 508, "end_column": 70 }, { "span": "\"CREATE TABLE t1 (c1 INTEGER, c2 INTEGER \"\n \"CONSTRAINT cns1 REFERENCES t2 (pc1), c3 TEXT)\",", "start_line": 522, "start_column": 17, "end_line": 523, "end_column": 64 }, { "span": "\"CREATE TABLE t1 (c11 INTEGER NOT NULL, \"\n \"c12 INTEGER NOT NULL, c13 TEXT, PRIMARY KEY (c11, c12))\",", "start_line": 602, "start_column": 17, "end_line": 603, "end_column": 74 }, { "span": "\"CREATE TABLE t2 (c21 INTEGER NOT NULL, \"\n \"c22 TEXT, c23 INTEGER, c24 INTEGER, PRIMARY KEY (c21))\"]", "start_line": 604, "start_column": 17, "end_line": 605, "end_column": 73 }, { "span": "\"CREATE TABLE t1 (c11 INTEGER PRIMARY KEY NOT NULL, \"\n \"c12 INTEGER NOT NULL)\",", "start_line": 629, "start_column": 17, "end_line": 630, "end_column": 40 }, { "span": "\"CREATE TABLE t2 (c21 INTEGER PRIMARY KEY NOT NULL, \"\n \"c22 INTEGER, c23 INTEGER)\",", "start_line": 631, "start_column": 17, "end_line": 632, "end_column": 44 }, { "span": "\"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11)\"]", "start_line": 633, "start_column": 17, "end_line": 634, "end_column": 56 }, { "span": "\"CREATE TABLE t1 (c11 INTEGER NOT NULL UNIQUE, \"\n \"c12 INTEGER NOT NULL UNIQUE)\",", "start_line": 660, "start_column": 17, "end_line": 661, "end_column": 47 }, { "span": "\"CREATE TABLE t2 (c21 INTEGER PRIMARY KEY NOT NULL, \"\n \"c22 INTEGER, c23 INTEGER)\",", "start_line": 662, "start_column": 17, "end_line": 663, "end_column": 44 }, { "span": "\"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11)\"]", "start_line": 664, "start_column": 17, "end_line": 665, "end_column": 56 }, { "span": "\"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c12)\"]", "start_line": 696, "start_column": 17, "end_line": 697, "end_column": 56 }, { "span": "\"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11) ON UPDATE RESTRICT\"]", "start_line": 727, "start_column": 17, "end_line": 728, "end_column": 75 }, { "span": "\"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11)\"]", "start_line": 757, "start_column": 17, "end_line": 758, "end_column": 56 }, { "span": "\"ALTER TABLE t2 ADD CONSTRAINT t2_c22_fkey \" \\\n \"FOREIGN KEY (c22) REFERENCES t1 (c11) ON UPDATE RESTRICT\"]", "start_line": 788, "start_column": 17, "end_line": 789, "end_column": 75 }, { "span": "\"CREATE TABLE t1 (c11 INTEGER NOT NULL, c12 TEXT, \"\n \"PRIMARY KEY (c11))\",", "start_line": 814, "start_column": 17, "end_line": 815, "end_column": 37 }, { "span": "\"CREATE TABLE t2 (c21 INTEGER NOT NULL PRIMARY KEY, \"\n \"c22 INTEGER NOT NULL REFERENCES t1 (c11), c23 TEXT)\"]", "start_line": 816, "start_column": 17, "end_line": 817, "end_column": 70 }, { "span": "\"CREATE TABLE t1 (c1 INTEGER NOT NULL, \"\n \"c2 INTEGER NOT NULL)\",", "start_line": 968, "start_column": 17, "end_line": 969, "end_column": 39 }, { "span": "\"CREATE TABLE t1 (c11 integer, c12 text, \"\n \"c13 integer CONSTRAINT cns1 REFERENCES t2 (c21))\",", "start_line": 1049, "start_column": 17, "end_line": 1050, "end_column": 67 }, { "span": "\"CREATE TABLE s1.t1 (c1 integer \"\n \"CONSTRAINT cns1 CHECK (c1 > 50), c2 text)\"]", "start_line": 1084, "start_column": 37, "end_line": 1085, "end_column": 60 } ]

[]

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[ { "content": "def add_list(p):\n p = p + [1]", "metadata": "root.add_list", "header": "['module', '___EOS___']", "index": 3 } ]

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[ { "content": " def testGetRandomFromZNStar(self):\n logging.debug('Running testGetRandomFromZNStar method.')\n # 8 bit values not relatively prime to 143 and less than 143.\n not_relatively_prime_to_143 = [130, 132, 143]\n for _ in xrange(20):\n r = _PAILLIER1._GetRandomFromZNStar(8, 143)\n self.assertFalse(r in not_relatively_prime_to_143)", "metadata": "root.PaillierTest.testGetRandomFromZNStar", "header": "['class', 'PaillierTest', '(', 'googletest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 124 }, { "content": " def testEncryptDecryptFloatLargeFiniteNumbers(self):\n logging.debug('Running testEncryptDecryptFloatLargeFiniteNumbers method.')\n # ------- positive large finite numbers ------\n large1 = 1.23456789123456789123456789 * 2**80\n large2 = 1.23456789123456789123456789 * 2**100\n c_large1 = _PAILLIER1.EncryptFloat(large1)\n self.assertEquals(large1, _PAILLIER1.DecryptFloat(c_large1))\n c_large2 = _PAILLIER1.EncryptFloat(large2)\n self.assertEquals(large2, _PAILLIER1.DecryptFloat(c_large2))\n # mantissa with 17 digits.\n c_mantissa17digits = _PAILLIER1.EncryptFloat(\n 1234567890.0123456)\n self.assertEquals(1234567890.0123456,\n _PAILLIER1.DecryptFloat(c_mantissa17digits))\n # mantissa with 18 digits rounds only approximately.\n c_mantissa18digits = _PAILLIER1.EncryptFloat(\n 1234567890.01234568)\n decrypted = _PAILLIER1.DecryptFloat(c_mantissa18digits)\n self.assertNotEquals(1234567890.0123456, decrypted)\n self.assertTrue(abs(decrypted - 1234567890.0123456) <= .0000003)\n # absolute largest normal number allowed\n largest_normal = 1.9999999999999998 * 2**389\n c_largest_normal = _PAILLIER1.EncryptFloat(largest_normal)\n self.assertEquals(largest_normal, _PAILLIER1.DecryptFloat(c_largest_normal))\n # larger than largest normal number throws error\n try:\n beyond_largest_normal = 1.0 * 2**390\n _PAILLIER1.EncryptFloat(beyond_largest_normal)\n self.fail()\n except ValueError:\n pass # success\n\n # ---- negative large finite numbers ------\n # mantissa with 17 digits and negative.\n c_mantissa17digits_neg = _PAILLIER1.EncryptFloat(\n -1234567890.0123456)\n self.assertEquals(-1234567890.0123456,\n _PAILLIER1.DecryptFloat(c_mantissa17digits_neg))\n # mantissa with 18 digits rounds only approximately.\n c_mantissa18digits_neg = _PAILLIER1.EncryptFloat(\n -1234567890.01234568)\n decrypted = _PAILLIER1.DecryptFloat(c_mantissa18digits_neg)\n self.assertNotEquals(-1234567890.0123456, decrypted)\n self.assertTrue(abs(decrypted - -1234567890.0123456) <= .0000003)\n # absolute largest negative normal number allowed\n largest_normal = -1.9999999999999998 * 2**389\n c_largest_normal = _PAILLIER1.EncryptFloat(largest_normal)\n self.assertEquals(largest_normal, _PAILLIER1.DecryptFloat(c_largest_normal))\n # larger magnitude than negative normal number with largest magnituede\n # throws and error\n try:\n beyond_largest_normal = -1.0 * 2**390\n _PAILLIER1.EncryptFloat(beyond_largest_normal)\n self.fail()\n except ValueError:\n pass # success", "metadata": "root.PaillierTest.testEncryptDecryptFloatLargeFiniteNumbers", "header": "['class', 'PaillierTest', '(', 'googletest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 417 }, { "content": " def testEncryptDecryptFloatAddFiniteNumbers(self):\n logging.debug('Running testEncryptDecryptFloatAddFiniteNumbers method.')\n # add a chain of small positive numbers\n c_1_0 = _PAILLIER1.EncryptFloat(1.0)\n c_2_0 = _PAILLIER1.EncryptFloat(2.0)\n c_3_0 = _PAILLIER1.Add(c_2_0, c_1_0)\n c_5_0 = _PAILLIER1.Add(c_3_0, c_2_0)\n self.assertEquals(3.0, _PAILLIER1.DecryptFloat(c_3_0))\n self.assertEquals(5.0, _PAILLIER1.DecryptFloat(c_5_0))\n # add a chain of small negative numbers\n c_2_0neg = _PAILLIER1.EncryptFloat(-2.0)\n c_4_0neg = _PAILLIER1.EncryptFloat(-4.0)\n c_6_0neg = _PAILLIER1.Add(c_2_0neg, c_4_0neg)\n self.assertEquals(-6.0, _PAILLIER1.DecryptFloat(c_6_0neg))\n # add positive and negative small numbers\n c_1_0neg = _PAILLIER1.Add(c_5_0, c_6_0neg)\n self.assertEquals(-1.0, _PAILLIER1.DecryptFloat(c_1_0neg))\n # add a large positive and negative number\n large1 = 1.999999999999999 * 2**389\n c_large1 = _PAILLIER1.EncryptFloat(large1)\n c_large2neg = _PAILLIER1.EncryptFloat(-0.999999999999999 * 2**389)\n decrypted = _PAILLIER1.DecryptFloat(_PAILLIER1.Add(c_large1, c_large2neg))\n # check close to 1.0 * 2**389\n self.assertTrue(decrypted > .9999999999999998 * 2**389)\n self.assertTrue(decrypted < 1.000000000000002 * 2**389)\n # add a very large and a relatively small number --> same large number.\n c_small1 = _PAILLIER1.EncryptFloat(.99999999999999 * 2**-430)\n decrypted = _PAILLIER1.DecryptFloat(_PAILLIER1.Add(c_large1, c_small1))\n self.assertEquals(large1, decrypted)\n # add two subnormal numbers.\n smallest_subnormal = 2**-441\n c_smallest_subnormal = _PAILLIER1.EncryptFloat(smallest_subnormal)\n c_2smallest_subnormal = _PAILLIER1.Add(c_smallest_subnormal,\n c_smallest_subnormal)\n self.assertEquals(2**-440, _PAILLIER1.DecryptFloat(c_2smallest_subnormal))\n # add a positive and negative subnormal numbers\n c_smallest_subnormal_neg = _PAILLIER1.EncryptFloat(-2**-441)\n self.assertEquals(smallest_subnormal, _PAILLIER1.DecryptFloat(\n _PAILLIER1.Add(c_2smallest_subnormal, c_smallest_subnormal_neg)))", "metadata": "root.PaillierTest.testEncryptDecryptFloatAddFiniteNumbers", "header": "['class', 'PaillierTest', '(', 'googletest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 474 } ]

[ { "span": "self.assertFalse(r in not_relatively_prime_to_143)", "start_line": 130, "start_column": 6, "end_line": 130, "end_column": 56 }, { "span": "self.assertTrue(abs(decrypted - 1234567890.0123456) <= .0000003)", "start_line": 436, "start_column": 4, "end_line": 436, "end_column": 68 }, { "span": "self.assertTrue(abs(decrypted - -1234567890.0123456) <= .0000003)", "start_line": 460, "start_column": 4, "end_line": 460, "end_column": 69 }, { "span": "self.assertTrue(decrypted > .9999999999999998 * 2**389)", "start_line": 497, "start_column": 4, "end_line": 497, "end_column": 59 }, { "span": "self.assertTrue(decrypted < 1.000000000000002 * 2**389)", "start_line": 498, "start_column": 4, "end_line": 498, "end_column": 59 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "\"\"\"Admin suppor for inlines\n\nPeter Cicman, Divio GmbH, 2008\n\"\"\"\nfrom django.utils.text import capfirst, get_text_list\nfrom django.contrib.admin.util import flatten_fieldsets\nfrom django.http import HttpResponseRedirect\nfrom django.utils.encoding import force_unicode\n\nimport re\nfrom copy import deepcopy\nfrom django.conf import settings\nfrom django import forms\nfrom django.contrib import admin\nfrom django.db.models import Model\nfrom django.forms.util import ErrorList, ValidationError\nfrom django.forms.models import BaseInlineFormSet, ModelFormMetaclass\nfrom django.utils.translation import ugettext as _\nfrom django.template.loader import find_template\nfrom django.template import TemplateDoesNotExist\nfrom multilingual.languages import get_default_language\nfrom multilingual.utils import GLL\n\nMULTILINGUAL_PREFIX = '_ml__trans_'\nMULTILINGUAL_INLINE_PREFIX = '_ml__inline_trans_'\n\n\n\n\n\n\n\n \n \n \n \n\n\n\n \n\n \n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def gll(func):\n def wrapped(cls, request, *args, **kwargs):\n cls.use_language = request.GET.get('lang', request.GET.get('language', get_default_language()))\n GLL.lock(cls.use_language)\n resp = func(cls, request, *args, **kwargs)\n GLL.release()\n return resp\n wrapped.__name__ = func.__name__\n wrapped.__doc__ = func.__doc__\n return wrapped", "metadata": "root.gll", "header": "['module', '___EOS___']", "index": 26 }, { "content": "def standard_get_fill_check_field(stdopts):\n if hasattr(stdopts, 'translation_model'):\n opts = stdopts.translation_model._meta\n for field in opts.fields:\n if field.name in ('language_code', 'master'):\n continue\n if not (field.blank or field.null):\n return field.name\n return None", "metadata": "root.standard_get_fill_check_field", "header": "['module', '___EOS___']", "index": 37 }, { "content": "def relation_hack(form, fields, prefix=''):\n opts = form.instance._meta\n localm2m = [m2m.attname for m2m in opts.local_many_to_many]\n externalfk = [obj.field.related_query_name() for obj in opts.get_all_related_objects()]\n externalm2m = [m2m.get_accessor_name() for m2m in opts.get_all_related_many_to_many_objects()]\n for name, db_field in fields:\n full_name = '%s%s' % (prefix, name)\n if full_name in form.fields:\n value = getattr(form.instance, name, '')\n # check for (local) ForeignKeys\n if isinstance(value, Model):\n value = value.pk\n # check for (local) many to many fields\n elif name in localm2m:\n value = value.all()\n # check for (external) ForeignKeys\n elif name in externalfk:\n value = value.all()\n # check for (external) many to many fields\n elif name in externalm2m:\n value = value.all()\n form.fields[full_name].initial = value", "metadata": "root.relation_hack", "header": "['module', '___EOS___']", "index": 47 }, { "content": "class MultilingualInlineModelForm(forms.ModelForm):", "metadata": "root.MultilingualInlineModelForm", "header": "['module', '___EOS___']", "index": 71 }, { "content": " def __init__(self, data=None, files=None, auto_id='id_%s', prefix=None,\n initial=None, error_class=ErrorList, label_suffix=':',\n empty_permitted=False, instance=None):\n \"\"\"\n Fill initial ML Fields\n \"\"\"\n super(MultilingualInlineModelForm, self).__init__(data, files, auto_id,\n prefix, initial, error_class, label_suffix, empty_permitted, instance)\n \n # only read initial data if the object already exists, not if we're adding it!\n if self.instance.pk:\n relation_hack(self, get_translated_fields(self.instance), MULTILINGUAL_INLINE_PREFIX)", "metadata": "root.MultilingualInlineModelForm.__init__", "header": "['class', 'MultilingualInlineModelForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 72 }, { "content": "class MultilingualInlineFormSet(BaseInlineFormSet):\n\n \n ", "metadata": "root.MultilingualInlineFormSet", "header": "['module', '___EOS___']", "index": 86 }, { "content": " def get_queryset(self):\n if self.queryset is not None:\n qs = self.queryset\n else:\n qs = self.model._default_manager.get_query_set()\n\n if not qs.ordered:\n qs = qs.order_by(self.model._meta.pk.name)\n\n if self.max_num > 0:\n _queryset = qs[:self.max_num]\n else:\n _queryset = qs\n return _queryset", "metadata": "root.MultilingualInlineFormSet.get_queryset", "header": "['class', 'MultilingualInlineFormSet', '(', 'BaseInlineFormSet', ')', ':', '___EOS___']", "index": 87 }, { "content": " def save_new(self, form, commit=True):\n \"\"\"\n NOTE: save_new method is completely overridden here, there's no\n other way to pretend double save otherwise. Just assign translated data\n to object \n \"\"\"\n kwargs = {self.fk.get_attname(): self.instance.pk}\n new_obj = self.model(**kwargs)\n self._prepare_multilingual_object(new_obj, form)\n return forms.save_instance(form, new_obj, exclude=[self._pk_field.name], commit=commit)", "metadata": "root.MultilingualInlineFormSet.save_new", "header": "['class', 'MultilingualInlineFormSet', '(', 'BaseInlineFormSet', ')', ':', '___EOS___']", "index": 102 }, { "content": " def save_existing(self, form, instance, commit=True):\n \"\"\"\n NOTE: save_new method is completely overridden here, there's no\n other way to pretend double save otherwise. Just assign translated data\n to object \n \"\"\"\n self._prepare_multilingual_object(instance, form)\n return forms.save_instance(form, instance, exclude=[self._pk_field.name], commit=commit)", "metadata": "root.MultilingualInlineFormSet.save_existing", "header": "['class', 'MultilingualInlineFormSet', '(', 'BaseInlineFormSet', ')', ':', '___EOS___']", "index": 113 }, { "content": " def _prepare_multilingual_object(self, obj, form):\n opts = obj._meta\n for realname, fieldname in self.ml_fields.items():\n field = opts.get_field_by_name(realname)[0]\n m = re.match(r'^%s(?P<field_name>.*)$' % MULTILINGUAL_INLINE_PREFIX, fieldname)\n if m:\n field.save_form_data(self.instance, form.cleaned_data[fieldname])\n setattr(obj, realname, getattr(self.instance, realname.rsplit('_', 1)[0]))", "metadata": "root.MultilingualInlineFormSet._prepare_multilingual_object", "header": "['class', 'MultilingualInlineFormSet', '(', 'BaseInlineFormSet', ')', ':', '___EOS___']", "index": 122 }, { "content": "class MultilingualInlineAdmin(admin.TabularInline):\n formset = MultilingualInlineFormSet\n form = MultilingualInlineModelForm\n \n template = 'admin/multilingual/edit_inline/tabular.html'\n \n # css class added to inline box\n inline_css_class = None\n \n use_language = None\n \n fill_check_field = None\n #TODO: add some nice template\n \n \n\n ", "metadata": "root.MultilingualInlineAdmin", "header": "['module', '___EOS___']", "index": 132 }, { "content": " def __init__(self, parent_model, admin_site):\n super(MultilingualInlineAdmin, self).__init__(parent_model, admin_site)\n if hasattr(self, 'use_fields'):\n # go around admin fields structure validation\n self.fields = self.use_fields", "metadata": "root.MultilingualInlineAdmin.__init__", "header": "['class', 'MultilingualInlineAdmin', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 146 }, { "content": " def get_formset(self, request, obj=None, **kwargs):\n FormSet = super(MultilingualInlineAdmin, self).get_formset(request, obj, **kwargs)\n FormSet.use_language = GLL.language_code\n FormSet.ml_fields = {}\n for name, field in get_translated_fields(self.model, GLL.language_code):\n fieldname = '%s%s' % (MULTILINGUAL_INLINE_PREFIX, name)\n FormSet.form.base_fields[fieldname] = self.formfield_for_dbfield(field, request=request)\n FormSet.ml_fields[name] = fieldname\n return FormSet", "metadata": "root.MultilingualInlineAdmin.get_formset", "header": "['class', 'MultilingualInlineAdmin', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 152 }, { "content": " def queryset(self, request):\n \"\"\"\n Filter objects which don't have a value in this language\n \"\"\"\n qs = super(MultilingualInlineAdmin, self).queryset(request)\n # Don't now what the hell I was thinking here, but this code breaks stuff:\n #\n # checkfield = self.get_fill_check_field()\n # if checkfield is not None:\n # kwargs = {str('%s_%s__isnull' % (checkfield, GLL.language_code)): False}\n # from django.db.models.fields import CharField\n # if isinstance(self.model._meta.translation_model._meta.get_field_by_name(checkfield)[0], CharField):\n # kwargs[str('%s_%s__gt' % (checkfield, GLL.language_code))] = ''\n # return qs.filter(**kwargs)\n return qs.filter(translations__language_code=GLL.language_code).distinct()", "metadata": "root.MultilingualInlineAdmin.queryset", "header": "['class', 'MultilingualInlineAdmin', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 162 }, { "content": " def get_fill_check_field(self):\n if self.fill_check_field is None:\n self.fill_check_field = standard_get_fill_check_field(self.model._meta)\n return self.fill_check_field", "metadata": "root.MultilingualInlineAdmin.get_fill_check_field", "header": "['class', 'MultilingualInlineAdmin', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 178 }, { "content": "class MultilingualModelAdminForm(forms.ModelForm):\n # for rendering / saving multilingual fields connecte to model, takes place\n # when admin per language is ussed\n \n \n \n \n \n \n ", "metadata": "root.MultilingualModelAdminForm", "header": "['module', '___EOS___']", "index": 184 }, { "content": " def __init__(self, data=None, files=None, auto_id='id_%s', prefix=None,\n initial=None, error_class=ErrorList, label_suffix=':',\n empty_permitted=False, instance=None):\n \"\"\"\n Fill up initial ML Fields\n \"\"\"\n super(MultilingualModelAdminForm, self).__init__(data, files, auto_id, prefix,\n initial, error_class, label_suffix,\n empty_permitted, instance)\n # only try to fill intial data if we are not adding an object!\n if self.instance.pk:\n fields = [(f, getattr(self.instance, \"%s_%s\" % (f, GLL.language_code), '')) for f in self.ml_fields]\n relation_hack(self, fields)", "metadata": "root.MultilingualModelAdminForm.__init__", "header": "['class', 'MultilingualModelAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___NEWLINE___', '# for rendering / saving multilingual fields connecte to model, takes place', '___NL___', '# when admin per language is ussed', '___NL___', '___EOS___']", "index": 188 }, { "content": " def clean(self):\n cleaned_data = super(MultilingualModelAdminForm, self).clean()\n self.validate_ml_unique()\n return cleaned_data", "metadata": "root.MultilingualModelAdminForm.clean", "header": "['class', 'MultilingualModelAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___NEWLINE___', '# for rendering / saving multilingual fields connecte to model, takes place', '___NL___', '# when admin per language is ussed', '___NL___', '___EOS___']", "index": 202 }, { "content": " def validate_ml_unique(self):\n form_errors = []\n \n if not hasattr(self.instance._meta, 'translation_model'):\n return\n for check in self.instance._meta.translation_model._meta.unique_together[:]:\n lookup_kwargs = {'language_code': GLL.language_code}\n for field_name in check:\n #local_name = \"%s_%s\" % (field_name, self.use_language)\n if self.cleaned_data.get(field_name) is not None:\n lookup_kwargs[field_name] = self.cleaned_data.get(field_name) \n \n if len(check) == 2 and 'master' in check and 'language_code' in check:\n continue\n \n qs = self.instance._meta.translation_model.objects.filter(**lookup_kwargs)\n if self.instance.pk is not None:\n qs = qs.exclude(master=self.instance.pk)\n \n if qs.count():\n model_name = capfirst(self.instance._meta.verbose_name)\n field_labels = []\n for field_name in check:\n if field_name == \"language_code\":\n field_labels.append(_(\"language\"))\n elif field_name == \"master\":\n continue\n else:\n field_labels.append(self.instance._meta.translation_model._meta.get_field_by_name(field_name)[0].verbose_name)\n field_labels = get_text_list(field_labels, _('and'))\n form_errors.append(\n _(u\"%(model_name)s with this %(field_label)s already exists.\") % \\\n {'model_name': unicode(model_name),\n 'field_label': unicode(field_labels)}\n )\n if form_errors:\n # Raise the unique together errors since they are considered\n # form-wide.\n raise ValidationError(form_errors)", "metadata": "root.MultilingualModelAdminForm.validate_ml_unique", "header": "['class', 'MultilingualModelAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___NEWLINE___', '# for rendering / saving multilingual fields connecte to model, takes place', '___NL___', '# when admin per language is ussed', '___NL___', '___EOS___']", "index": 207 }, { "content": " def save(self, commit=True):\n self._prepare_multilingual_object(self.instance, self)\n return super(MultilingualModelAdminForm, self).save(commit) ", "metadata": "root.MultilingualModelAdminForm.save", "header": "['class', 'MultilingualModelAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___NEWLINE___', '# for rendering / saving multilingual fields connecte to model, takes place', '___NL___', '# when admin per language is ussed', '___NL___', '___EOS___']", "index": 248 }, { "content": " def _prepare_multilingual_object(self, obj, form):\n opts = self.instance._meta\n for name in self.ml_fields:\n field = opts.get_field_by_name(name)[0]\n # respect save_form_data\n field.save_form_data(self.instance, form.cleaned_data[name])\n setattr(obj, \"%s_%s\" % (name, GLL.language_code), getattr(self.instance, name))", "metadata": "root.MultilingualModelAdminForm._prepare_multilingual_object", "header": "['class', 'MultilingualModelAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___NEWLINE___', '# for rendering / saving multilingual fields connecte to model, takes place', '___NL___', '# when admin per language is ussed', '___NL___', '___EOS___']", "index": 253 }, { "content": "class MultilingualModelAdmin(admin.ModelAdmin):\n \n # use special template to render tabs for languages on top\n change_form_template = \"admin/multilingual/change_form.html\"\n \n form = MultilingualModelAdminForm\n \n _multilingual_model_admin = True\n \n use_language = None\n \n fill_check_field = None\n \n _use_hacks = ['fieldsets', 'prepopulated_fields', 'readonly_fields']\n\n class Media:\n css = {\n 'all': ('%smultilingual/admin/css/style.css' % settings.MEDIA_URL,)\n }\n \n \n \n \n \n \n \n \n \n \n ", "metadata": "root.MultilingualModelAdmin", "header": "['module', '___EOS___']", "index": 263 }, { "content": " def __init__(self, model, admin_site):\n for attr in self._use_hacks:\n if hasattr(self, 'use_%s' % attr):\n setattr(self, attr, getattr(self, 'use_%s' % attr))\n super(MultilingualModelAdmin, self).__init__(model, admin_site)", "metadata": "root.MultilingualModelAdmin.__init__", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 283 }, { "content": " def get_fill_check_field(self):\n if self.fill_check_field is None:\n self.fill_check_field = standard_get_fill_check_field(self.model._meta)\n return self.fill_check_field", "metadata": "root.MultilingualModelAdmin.get_fill_check_field", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 289 }, { "content": " def get_form(self, request, obj=None, **kwargs): \n # assign language to inlines, so they now how to render\n for inline in self.inline_instances:\n if isinstance(inline, MultilingualInlineAdmin):\n inline.use_language = GLL.language_code\n \n Form = super(MultilingualModelAdmin, self).get_form(request, obj, **kwargs)\n \n Form.ml_fields = {}\n for name, field in get_default_translated_fields(self.model):\n if not field.editable:\n continue\n form_field = self.formfield_for_dbfield(field, request=request)\n local_name = \"%s_%s\" % (name, GLL.language_code)\n Form.ml_fields[name] = form_field\n Form.base_fields[name] = form_field\n Form.use_language = GLL.language_code\n return Form", "metadata": "root.MultilingualModelAdmin.get_form", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 294 }, { "content": " def placeholder_plugin_filter(self, request, queryset):\n \"\"\"\n This is only used on models which use placeholders from the django-cms\n \"\"\"\n if not request:\n return queryset\n if GLL.is_active:\n return queryset.filter(language=GLL.language_code)\n return queryset", "metadata": "root.MultilingualModelAdmin.placeholder_plugin_filter", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 313 }, { "content": " @gll\n def change_view(self, *args, **kwargs):\n return super(MultilingualModelAdmin, self).change_view(*args, **kwargs)", "metadata": "root.MultilingualModelAdmin.change_view", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 323 }, { "content": " @gll\n def add_view(self, *args, **kwargs):\n return super(MultilingualModelAdmin, self).add_view(*args, **kwargs)", "metadata": "root.MultilingualModelAdmin.add_view", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 327 }, { "content": " @gll\n def delete_view(self, *args, **kwargs):\n return super(MultilingualModelAdmin, self).delete_view(*args, **kwargs)", "metadata": "root.MultilingualModelAdmin.delete_view", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 331 }, { "content": " def render_change_form(self, request, context, add=False, change=False, form_url='', obj=None):\n # add context variables\n filled_languages = []\n fill_check_field = self.get_fill_check_field()\n if obj and fill_check_field is not None:\n from django.db.models.fields import CharField\n kwargs = {'%s__isnull' % fill_check_field:False}\n if isinstance(self.model._meta.translation_model._meta.get_field_by_name(fill_check_field)[0], CharField):\n kwargs['%s__gt' % fill_check_field] = ''\n filled_languages = [t[0] for t in obj.translations.filter(**kwargs).values_list('language_code')]\n context.update({\n 'current_language_index': GLL.language_code,\n 'current_language_code': GLL.language_code,\n 'filled_languages': filled_languages,\n 'old_template': self.get_old_template(),\n })\n return super(MultilingualModelAdmin, self).render_change_form(request, context, add, change, form_url, obj)", "metadata": "root.MultilingualModelAdmin.render_change_form", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 335 }, { "content": " def get_old_template(self):\n opts = self.model._meta\n app_label = opts.app_label\n search_templates = [\n \"admin/%s/%s/change_form.html\" % (app_label, opts.object_name.lower()),\n \"admin/%s/change_form.html\" % app_label,\n \"admin/change_form.html\"\n ]\n for template in search_templates:\n try:\n find_template(template)\n return template\n except TemplateDoesNotExist:\n pass", "metadata": "root.MultilingualModelAdmin.get_old_template", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 354 }, { "content": " def response_change(self, request, obj):\n # because save & continue - so it shows the same language\n if request.POST.has_key(\"_continue\"):\n opts = obj._meta\n msg = _('The %(name)s \"%(obj)s\" was changed successfully.') % {'name': force_unicode(opts.verbose_name), 'obj': force_unicode(obj)}\n self.message_user(request, msg + ' ' + _(\"You may edit it again below.\"))\n lang, path = request.GET.get('language', get_default_language()), request.path\n if lang:\n lang = \"language=%s\" % lang\n if request.REQUEST.has_key('_popup'):\n path += \"?_popup=1\" + \"&%s\" % lang\n else:\n path += \"?%s\" % lang\n return HttpResponseRedirect(path)\n return super(MultilingualModelAdmin, self).response_change(request, obj)", "metadata": "root.MultilingualModelAdmin.response_change", "header": "['class', 'MultilingualModelAdmin', '(', 'admin', '.', 'ModelAdmin', ')', ':', '___NEWLINE___', '___NL___', '# use special template to render tabs for languages on top', '___NL___', '___EOS___']", "index": 369 }, { "content": "def get_translated_fields(model, language=None):\n meta = model._meta\n if not hasattr(meta, 'translated_fields'):\n if hasattr(meta, 'translation_model'):\n meta = meta.translation_model._meta\n else:\n return\n # returns all the translatable fields, except of the default ones\n if not language:\n for name, (field, non_default) in meta.translated_fields.items():\n if non_default: \n yield name, field\n else:\n # if language is defined return fields in the same order, like they are defined in the \n # translation class\n for field in meta.fields:\n if field.primary_key:\n continue\n name = field.name + \"_%s\" % language\n field = meta.translated_fields.get(name, None)\n if field:\n yield name, field[0]", "metadata": "root.get_translated_fields", "header": "['module', '___EOS___']", "index": 386 }, { "content": "def get_default_translated_fields(model):\n if hasattr(model._meta, 'translation_model'):\n for name, (field, non_default) in model._meta.translation_model._meta.translated_fields.items():\n if not non_default:\n yield name, field", "metadata": "root.get_default_translated_fields", "header": "['module', '___EOS___']", "index": 410 } ]

[ { "span": "from django.contrib.admin.util import flatten_fieldsets", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 55 }, { "span": "from copy import deepcopy", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 25 }, { "span": "from django.forms.models import BaseInlineFormSet, ModelFormMetaclass", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 69 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "from collections import namedtuple\n\nfrom Vintageous.vi.utils import modes\n\nfrom Vintageous.tests import set_text\nfrom Vintageous.tests import add_sel\nfrom Vintageous.tests import get_sel\nfrom Vintageous.tests import first_sel\nfrom Vintageous.tests import ViewTest\n\n\ntest_data = namedtuple('test_data', 'initial_text regions cmd_params expected msg')\n\nTESTS = (\n test_data('abc\\nabc\\nabc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 1}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\n abc\\nabc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 1}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\nabc\\nabc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 2}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\n abc\\nabc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 2}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\nabc\\nabc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 3}, 'abc abc abc', 'should join 3 lines'),\n test_data('abc\\n abc\\n abc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 3}, 'abc abc abc', 'should join 3 lines'),\n test_data('abc\\nabc\\nabc\\nabc\\nabc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 5}, 'abc abc abc abc abc', 'should join 5 lines'),\n test_data('abc\\n abc\\n abc\\n abc\\n abc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 5}, 'abc abc abc abc abc', 'should join 5 lines'),\n test_data('abc\\n\\n', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 3}, 'abc ', 'should join 3 lines and add one trailing space'),\n test_data('\\n\\nabc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 3}, 'abc', 'should join 3 lines without adding any spaces'),\n test_data('abc \\n abc \\n abc', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 3}, 'abc abc abc', 'should join 3 lines with leading spaces removed but trailing spaces intact'),\n test_data(' abc\\nabc ', [[(0, 0), (0, 0)]], {'mode': modes.INTERNAL_NORMAL, 'count': 1}, ' abc abc ', 'should join 2 lines with leading spaces of first line and trailing spaces of last line intact'),\n test_data('abc\\nabc\\nabc', [[(0, 0), (0, 1)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\n abc\\nabc', [[(0, 0), (0, 1)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\nabc\\nabc', [[(0, 0), (0, 1)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\n abc\\nabc', [[(0, 0), (0, 1)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\nabc\\nabc', [[(0, 1), (0, 0)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\n abc\\nabc', [[(0, 1), (0, 0)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\nabc\\nabc', [[(0, 1), (0, 0)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\n abc\\nabc', [[(0, 1), (0, 0)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\nabc\\nabc', [[(0, 0), (1, 1)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\n abc\\nabc', [[(0, 0), (1, 1)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\nabc\\nabc', [[(1, 1), (0, 0)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\n abc\\nabc', [[(1, 1), (0, 0)]], {'mode': modes.VISUAL}, 'abc abc\\nabc', 'should join 2 lines'),\n test_data('abc\\nabc\\nabc', [[(0, 0), (2, 1)]], {'mode': modes.VISUAL}, 'abc abc abc', 'should join 3 lines'),\n test_data('abc\\n abc\\nabc', [[(0, 0), (2, 1)]], {'mode': modes.VISUAL}, 'abc abc abc', 'should join 3 lines'),\n test_data('abc\\nabc\\nabc', [[(2, 1), (0, 0)]], {'mode': modes.VISUAL}, 'abc abc abc', 'should join 3 lines'),\n test_data('abc\\n abc\\nabc', [[(2, 1), (0, 0)]], {'mode': modes.VISUAL}, 'abc abc abc', 'should join 3 lines'),\n test_data('abc\\nabc\\nabc', [[(0, 0), (1, 1)]], {'mode': modes.VISUAL, 'count': 3}, 'abc abc\\nabc', 'should join 2 lines - count shouldn\\'t matter'),\n test_data('abc\\n abc\\nabc', [[(0, 0), (1, 1)]], {'mode': modes.VISUAL, 'count': 3}, 'abc abc\\nabc', 'should join 2 lines - count shouldn\\'t matter'),\n test_data(' abc\\nabc ', [[(0, 0), (1, 5)]], {'mode': modes.VISUAL}, ' abc abc ', 'should join 2 lines with leading spaces of first line and trailing spaces of last line intact'),\n test_data(' abc\\n\\n\\n', [[(0, 0), (3, 0)]], {'mode': modes.VISUAL_LINE}, ' abc \\n', 'should join 4 lines'),\n test_data(' abc \\n abc\\nabc', [[(0, 0), (0, 1)], [(1, 0), (1, 1)]], {'mode': modes.VISUAL_BLOCK}, ' abc abc\\nabc', 'should join 2 lines'),\n)\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Test_vi_big_j(ViewTest):", "metadata": "root.Test_vi_big_j", "header": "['module', '___EOS___']", "index": 50 }, { "content": " def testAll(self):\n for (i, data) in enumerate(TESTS):\n # TODO: Perhaps we should ensure that other state is reset too?\n self.view.sel().clear()\n\n self.write(data.initial_text)\n for region in data.regions:\n add_sel(self.view, self.R(*region))\n\n self.view.run_command('_vi_big_j', data.cmd_params)\n\n actual = self.view.substr(self.R(0, self.view.size()))\n msg = \"[{0}] {1}\".format(i, data.msg)\n self.assertEqual(data.expected, actual, msg)", "metadata": "root.Test_vi_big_j.testAll", "header": "['class', 'Test_vi_big_j', '(', 'ViewTest', ')', ':', '___EOS___']", "index": 51 } ]

[ { "span": "from Vintageous.tests import set_text", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 37 }, { "span": "from Vintageous.tests import get_sel", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 36 }, { "span": "from Vintageous.tests import first_sel", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 38 } ]

[]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def test_wrong_user(self):\n data = {'user': 'not-existing-user-name'}\n form = DashboardAddMemberForm(self.group, data)\n self.assertFalse(form.is_valid())\n self.assertTrue('user' in form._errors)", "metadata": "root.DashboardAddMemberFormTest.test_wrong_user", "header": "['class', 'DashboardAddMemberFormTest', '(', 'TestCase', ')', ':', '___EOS___']", "index": 16 }, { "content": " def test_wrong_username(self):\n wrong_usernames = (' ', '.', '*', 'joe!', '###', ',.<>')\n for username in wrong_usernames:\n data = {'user': username}\n form = DashboardAddMemberForm(self.group, data)\n self.assertFalse(form.is_valid())\n self.assertTrue('user' in form._errors)", "metadata": "root.DashboardAddMemberFormTest.test_wrong_username", "header": "['class', 'DashboardAddMemberFormTest', '(', 'TestCase', ')', ':', '___EOS___']", "index": 22 }, { "content": " def test_already_in_group(self):\n data = {'user': self.user.username}\n form = DashboardAddMemberForm(self.group, data)\n self.assertFalse(form.is_valid())\n self.assertTrue('user' in form._errors)", "metadata": "root.DashboardAddMemberFormTest.test_already_in_group", "header": "['class', 'DashboardAddMemberFormTest', '(', 'TestCase', ')', ':', '___EOS___']", "index": 36 } ]

[ { "span": "self.assertTrue('user' in form._errors)", "start_line": 20, "start_column": 8, "end_line": 20, "end_column": 47 }, { "span": "self.assertTrue('user' in form._errors)", "start_line": 28, "start_column": 12, "end_line": 28, "end_column": 51 }, { "span": "self.assertTrue('user' in form._errors)", "start_line": 40, "start_column": 8, "end_line": 40, "end_column": 47 } ]

[]

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[ { "content": "class SliceRoleAdmin(XOSBaseAdmin):\n model = SliceRole\n pass", "metadata": "root.SliceRoleAdmin", "header": "['module', '___EOS___']", "index": 694 }, { "content": "class SiteRoleAdmin(XOSBaseAdmin):\n model = SiteRole\n pass", "metadata": "root.SiteRoleAdmin", "header": "['module', '___EOS___']", "index": 699 } ]

[ { "span": "pass", "start_line": 696, "start_column": 4, "end_line": 696, "end_column": 8 }, { "span": "pass", "start_line": 701, "start_column": 4, "end_line": 701, "end_column": 8 } ]

[]

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[ { "content": "#!/usr/bin/env python\n\nimport os, os.path\nimport sys\nimport pprint\n\npath, scriptname = os.path.split(__file__)\n\nsys.path.append(os.path.abspath(path))\nsys.path.append(os.path.abspath(os.path.join(path, '..')))\n\nos.environ['DJANGO_SETTINGS_MODULE'] = 'tests.settings'\n\nfrom django.core import management\n\nmanagement.call_command('test', 'garfield')\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import pprint", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 13 } ]

[]

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[ { "content": "# -*- coding: utf-8 -*-\n\"\"\"\nThis is a collection of useful utility functions when working with docker on different environments.\nIn order to use these functions, install fabric on your local machine with::\n pip install fabric\nPlease note: Fabric is a remote code execution tool, NOT a remote configuration tool. While you can copy files\nfrom here to there, it is not a good replacement for salt or ansible in this regard.\nThere is a function called `production` where you need to fill in the details about your production machine(s).\nYou can then run::\n fab production status\nto get the status of your stack\nTo list all available commands, run::\n fab -l\n\"\"\"\n\nfrom __future__ import absolute_import, print_function, unicode_literals\nfrom fabric.operations import local as lrun, run, sudo, put\nfrom fabric.api import *\nfrom fabric.colors import green, red, yellow, blue\nfrom fabric.contrib.console import confirm\nimport os\nimport requests\nfrom requests.auth import HTTPBasicAuth\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def local():\n \"\"\"\n Work on the local environment\n \"\"\"\n env.compose_file = \"dev.yml\"\n env.project_dir = \".\"\n env.run = lrun\n env.cd = lcd", "metadata": "root.local", "header": "['module', '___EOS___']", "index": 25 }, { "content": "def production():\n \"\"\"\n Work on the production environment\n \"\"\"\n env.hosts = [\"fundingoss.com\"] # list the ip addresses or domain names of your production boxes here\n env.port = 56565 # ssh port\n env.user = \"root\" # remote user, see `env.run` if you don't log in as root\n\n env.compose_file = \"docker-compose.yml\"\n env.project_dir = \"/code/fundingoss.com\" # this is the project dir where your code lives on this machine\n\n # if you don't use key authentication, add your password here\n # env.password = \"foobar\"\n # if your machine has no bash installed, fall back to sh\n # env.shell = \"/bin/sh -c\"\n\n env.run = run # if you don't log in as root, replace with 'env.run = sudo'\n env.cd = cd", "metadata": "root.production", "header": "['module', '___EOS___']", "index": 35 }, { "content": "def copy_secrets():\n \"\"\"\n\n :return:\n \"\"\"\n secrets = [\".env\"]\n for secret in secrets:\n remote_path = \"/\".join([env.project_dir, secret])\n print(blue(\"Copying {secret} to {remote_path} on {host}\".format(\n secret=secret, remote_path=remote_path, host=env.host\n )))\n put(secret, remote_path)", "metadata": "root.copy_secrets", "header": "['module', '___EOS___']", "index": 55 }, { "content": "def rollback(commit=\"HEAD~1\"):\n \"\"\"\n Rollback to a previous commit and build the stack\n :param commit: Commit you want to roll back to. Default is the previous commit\n \"\"\"\n with env.cd(env.project_dir):\n env.run(\"git checkout {}\".format(commit))\n\n docker_compose(\"build\")", "metadata": "root.rollback", "header": "['module', '___EOS___']", "index": 69 }, { "content": "def deploy():\n \"\"\"\n Pulls the latest changes from master, rebuilt and restarts the stack\n \"\"\"\n lrun(\"git push origin master\")\n copy_secrets()\n with env.cd(env.project_dir):\n env.run(\"git pull origin master\")\n\n build()\n restart()", "metadata": "root.deploy", "header": "['module', '___EOS___']", "index": 80 }, { "content": "def restart():\n \"\"\"\n Restart all services\n \"\"\"\n docker_compose(\"stop\")", "metadata": "root.restart", "header": "['module', '___EOS___']", "index": 96 }, { "content": "def build(cache=True):\n \"\"\"\n Builds the the stack\n :param cache: Use docker cache. Default is True\n \"\"\"\n docker_compose(\"build\" if cache else \"build --no-cache\")", "metadata": "root.build", "header": "['module', '___EOS___']", "index": 103 }, { "content": "def status():\n \"\"\"\n Display the status of all services\n \"\"\"\n docker_compose(\"ps\")", "metadata": "root.status", "header": "['module', '___EOS___']", "index": 111 }, { "content": "def django_shell():\n \"\"\"\n Starts a Django shell\n \"\"\"\n docker_compose(\"run django python manage.py shell\")", "metadata": "root.django_shell", "header": "['module', '___EOS___']", "index": 118 }, { "content": "def migrate_database():\n \"\"\"\n Run a Django database migration\n \"\"\"\n docker_compose(\"run django python manage.py migrate\")", "metadata": "root.migrate_database", "header": "['module', '___EOS___']", "index": 128 }, { "content": "def logs(service=\"\"):\n \"\"\"\n Display logs\n :param service: Service to display the logs from. Default is all\n \"\"\"\n docker_compose(\"logs\" if not service else \"logs {}\".format(service))", "metadata": "root.logs", "header": "['module', '___EOS___']", "index": 140 }, { "content": "def docker_compose(command):\n \"\"\"\n Run a docker-compose command\n :param command: Command you want to run\n \"\"\"\n with env.cd(env.project_dir):\n return env.run(\"docker-compose -f {file} {command}\".format(file=env.compose_file, command=command))", "metadata": "root.docker_compose", "header": "['module', '___EOS___']", "index": 151 } ]

[ { "span": "from fabric.operations import local as lrun, run, sudo, put", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 59 }, { "span": "from fabric.colors import green, red, yellow, blue", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 50 }, { "span": "from fabric.contrib.console import confirm", "start_line": 19, "start_column": 0, "end_line": 19, "end_column": 42 }, { "span": "import os", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 9 }, { "span": "import requests", "start_line": 21, "start_column": 0, "end_line": 21, "end_column": 15 }, { "span": "from requests.auth import HTTPBasicAuth", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 39 } ]

[]

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[ { "content": " def priv_CreateSliver(self, slice_urn, credentials, rspec, users, force_approval=False, options=None):\t\n #user_info = {}\n user_info = users\n try:\n #if CredVerifier.checkValid(credentials, \"createsliver\"):\n if True:\n self.recordAction(\"createsliver\", credentials, slice_urn)\n try:\n #cert = Certificate(request.environ['CLIENT_RAW_CERT'])\n #user_info[\"urn\"] = cert.getURN()\n #user_info[\"email\"] = cert.getEmailAddress()\n self._log.debug(\"Parsed user cert with URN (%(urn)s) and email (%(email)s)\" % users)\n except Exception, e:\n self._log.exception(\"UNFILTERED EXCEPTION\")\n user_info[\"urn\"] = None\n user_info[\"email\"] = None\n from foam.app import admin_apih\n if not admin_apih.vlan_automation_on:\n sliver = foam.geni.lib.createSliver(slice_urn, credentials, rspec, user_info)\n style = ConfigDB.getConfigItemByKey(\"geni.approval.approve-on-creation\").getValue()\n if style == foam.geni.approval.NEVER:\n approve = False\n elif style == foam.geni.approval.ALWAYS:\n approve = True\n else:\n approve = foam.geni.ofeliaapproval.of_analyzeForApproval(sliver)\n if approve or force_approval:\n pid = foam.task.approveSliver(sliver.getURN(), AUTO_SLIVER_PRIORITY)\n self._log.debug(\"task.py launched for approve-sliver (PID: %d)\" % pid)\t\n else:\n free_vlan_list = self.pub_get_offered_vlans(1)\n free_vlan = free_vlan_list[0]\n slice_id = slice_urn.split(\"+slice+\")[1].split(\":\")[0].split(\"id_\")[1].split(\"name_\")[0]\n #filedir = './opt/ofelia/ofam/local/db'\n #filename = os.path.join(filedir, 'expedient_slices_info.json')\n #f = open(filename, 'r')\n #self.slice_info_dict = json.load(f)\n #f.close()\n if (slice_id == \"\") or (slice_id not in self.slice_info_dict): \n self._log.exception(\"The slice id you specified is non-existent\")\n raise Exception\n updated_slice_info_dict = self.slice_info_dict.copy()\n for sliv_pos, sliver in enumerate(self.slice_info_dict[slice_id]['switch_slivers']):\n for sfs_pos, sfs in enumerate(sliver['flowspace']): \n updated_slice_info_dict[slice_id]['switch_slivers'][sliv_pos]['flowspace'][sfs_pos]['vlan_id_start'] = free_vlan\n updated_slice_info_dict[slice_id]['switch_slivers'][sliv_pos]['flowspace'][sfs_pos]['vlan_id_end'] = free_vlan\n all_efs = self.create_slice_fs(updated_slice_info_dict[slice_id]['switch_slivers'])\n new_slice_of_rspec = create_ofv3_rspec(slice_id, updated_slice_info_dict[slice_id]['project_name'], updated_slice_info_dict[slice_id]['project_desc'], \\\n updated_slice_info_dict[slice_id]['slice_name'], updated_slice_info_dict[slice_id]['slice_desc'], \\\n updated_slice_info_dict[slice_id]['controller_url'], updated_slice_info_dict[slice_id]['owner_email'], \\\n updated_slice_info_dict[slice_id]['owner_password'], \\\n updated_slice_info_dict[slice_id]['switch_slivers'], all_efs)\n self.slice_info_dict = updated_slice_info_dict.copy()\n sliver = foam.geni.lib.createSliver(slice_urn, credentials, new_slice_of_rspec, user_info)\n pid = foam.task.approveSliver(sliver.getURN(), AUTO_SLIVER_PRIORITY)\n self._log.debug(\"task.py launched for approve-sliver (PID: %d)\" % pid)\n data = GeniDB.getSliverData(sliver.getURN(), True)\n foam.task.emailCreateSliver(data)\n return self.successResult(GeniDB.getManifest(sliver.getURN()))\n return\n\t\t\n except foam.geni.lib.RspecParseError, e:\n self._log.info(str(e))\n e._foam_logged = True\n raise e\n except foam.geni.lib.RspecValidationError, e:\n self._log.info(str(e))\n e._foam_logged = True\n raise e\n except foam.geni.lib.DuplicateSliver, ds:\n self._log.info(\"Attempt to create multiple slivers for slice [%s]\" % (ds.slice_urn))\n ds._foam_logged = True\n raise ds\n except foam.geni.lib.UnknownComponentManagerID, ucm:\n raise Fault(\"UnknownComponentManager\", \"Component Manager ID specified in %s does not match this aggregate.\" % (ucm.cid))\n except (foam.geni.lib.UnmanagedComponent, UnknownNode), uc:\n self._log.info(\"Attempt to request unknown component %s\" % (uc.cid))\n f = Fault(\"UnmanagedComponent\", \"DPID in component %s is unknown to this aggregate.\" % (uc.cid))\n f._foam_logged = True\n raise f\n except Exception, e:\n self._log.exception(\"Exception\")\n raise e", "metadata": "root.AMLegExpAPI.priv_CreateSliver", "header": "['class', 'AMLegExpAPI', '(', 'foam', '.', 'api', '.', 'xmlrpc', '.', 'Dispatcher', ')', ':', '___EOS___']", "index": 135 }, { "content": " def priv_DeleteSliver(self, slice_urn, credentials, options=None):\n try:\n #if CredVerifier.checkValid(credentials, \"deletesliver\", slice_urn):\n if True:\n self.recordAction(\"deletesliver\", credentials, slice_urn)\n if GeniDB.getSliverURN(slice_urn) is None:\n raise Fault(\"DeleteSliver\", \"Sliver for slice URN (%s) does not exist\" % (slice_urn))\n return self.errorResult(12, \"\") #not sure if this is needed\n sliver_urn = GeniDB.getSliverURN(slice_urn)\n data = GeniDB.getSliverData(sliver_urn, True)\n foam.geni.lib.deleteSliver(sliver_urn = sliver_urn)\n foam.task.emailGAPIDeleteSliver(data)\n return self.successResult(True)\n return self.successResult(False)\n\t\t\n except UnknownSlice, x:\n self._log.info(\"Attempt to delete unknown sliver for slice URN %s\" % (slice_urn))\n x._foam_logged = True\n raise x \n except Exception, e:\n self._log.exception(\"Exception\")\n raise e", "metadata": "root.AMLegExpAPI.priv_DeleteSliver", "header": "['class', 'AMLegExpAPI', '(', 'foam', '.', 'api', '.', 'xmlrpc', '.', 'Dispatcher', ')', ':', '___EOS___']", "index": 219 } ]

[ { "span": "return", "start_line": 194, "start_column": 6, "end_line": 194, "end_column": 12 }, { "span": "return self.errorResult(12, \"\") ", "start_line": 226, "start_column": 10, "end_line": 226, "end_column": 41 }, { "span": "return self.successResult(False)", "start_line": 232, "start_column": 6, "end_line": 232, "end_column": 38 } ]

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[ { "content": " def testInsertWithFile(self):\n \"\"\"testing insert with file\"\"\"\n assert self.has_table(\"texttable\"), \"missing attribute texttable\"\n fp = open(tempfile.mktemp(), \"w\")\n c = self.cursor()\n try:\n try:\n c.execute(self.table(\"texttable\")[1])\n data = fp.name * 300\n data = data[:3500]\n fp.write(data)\n fp.flush()\n fp.close()\n fp = open(fp.name, \"r\")\n c.execute(\"insert into %s (a, b) values (?, ?)\" % (self.table(\"texttable\")[0]), [(0, fp)], {1:zxJDBC.LONGVARCHAR})\n self.db.commit()\n c.execute(\"select b from %s\" % (self.table(\"texttable\")[0]))\n f = c.fetchall()\n assert len(f) == 1, \"expected [1] row, got [%d]\" % (len(f))\n assert len(f[0][0]) == len(data), \"expected [%d], got [%d]\" % (len(data), len(f[0][0]))\n assert data == f[0][0], \"failed to retrieve the same text as inserted\"\n except Exception, e:\n raise e\n finally:\n c.execute(\"drop table %s\" % (self.table(\"texttable\")[0]))\n c.close()\n self.db.commit()\n fp.close()\n os.remove(fp.name)", "metadata": "root.zxAPITestCase.testInsertWithFile", "header": "['class', 'zxAPITestCase', '(', 'zxJDBCTestCase', ')', ':', '___EOS___']", "index": 469 }, { "content": " def _test_blob(self, obj=0):\n assert self.has_table(\"blobtable\"), \"no blob table\"\n tabname, sql = self.table(\"blobtable\")\n fn = tempfile.mktemp()\n fp = None\n\n c = self.cursor()\n try:\n\n hello = (\"hello\",) * 1024\n\n c.execute(sql)\n self.db.commit()\n\n from java.io import FileOutputStream, FileInputStream, ObjectOutputStream, ObjectInputStream, ByteArrayInputStream\n\n fp = FileOutputStream(fn)\n oos = ObjectOutputStream(fp)\n oos.writeObject(hello)\n fp.close()\n\n fp = FileInputStream(fn)\n blob = ObjectInputStream(fp)\n value = blob.readObject()\n fp.close()\n assert hello == value, \"unable to serialize properly\"\n\n if obj == 1:\n fp = open(fn, \"rb\")\n else:\n fp = FileInputStream(fn)\n\n c.execute(\"insert into %s (a, b) values (?, ?)\" % (tabname), [(0, fp)], {1:zxJDBC.BLOB})\n self.db.commit()\n\n c.execute(\"select * from %s\" % (tabname))\n f = c.fetchall()\n bytes = f[0][1]\n blob = ObjectInputStream(ByteArrayInputStream(bytes)).readObject()\n\n assert hello == blob, \"blobs are not equal\"\n\n finally:\n c.execute(\"drop table %s\" % (tabname))\n c.close()\n self.db.commit()\n if os.path.exists(fn):\n if fp:\n fp.close()\n os.remove(fn)", "metadata": "root.LOBTestCase._test_blob", "header": "['class', 'LOBTestCase', '(', 'zxJDBCTestCase', ')', ':', '___EOS___']", "index": 957 }, { "content": " def _test_clob(self, asfile=0):\n assert self.has_table(\"clobtable\"), \"no clob table\"\n tabname, sql = self.table(\"clobtable\")\n\n c = self.cursor()\n try:\n hello = \"hello\" * 1024 * 10\n\n c.execute(sql)\n self.db.commit()\n\n if asfile:\n fp = open(tempfile.mktemp(), \"w\")\n fp.write(hello)\n fp.flush()\n fp.close()\n obj = open(fp.name, \"r\")\n else:\n obj = hello\n\n c.execute(\"insert into %s (a, b) values (?, ?)\" % (tabname), [(0, obj)], {1:zxJDBC.CLOB})\n c.execute(\"select * from %s\" % (tabname), maxrows=1)\n f = c.fetchall()\n assert len(f) == 1, \"expected [%d], got [%d]\" % (1, len(f))\n assert hello == f[0][1], \"clobs are not equal\"\n\n finally:\n c.execute(\"drop table %s\" % (tabname))\n c.close()\n self.db.commit()\n if asfile:\n obj.close()\n os.remove(obj.name)", "metadata": "root.LOBTestCase._test_clob", "header": "['class', 'LOBTestCase', '(', 'zxJDBCTestCase', ')', ':', '___EOS___']", "index": 1016 }, { "content": " def testCSVPipe(self):\n \"\"\"testing the CSV pipe\"\"\"\n from java.io import PrintWriter, FileWriter\n from com.ziclix.python.sql.pipe import Pipe\n from com.ziclix.python.sql.pipe.db import DBSource\n from com.ziclix.python.sql.pipe.csv import CSVSink\n\n try:\n src = self.connect()\n fn = tempfile.mktemp(suffix=\"csv\")\n writer = PrintWriter(FileWriter(fn))\n csvSink = CSVSink(writer)\n\n c = self.cursor()\n try:\n c.execute(\"insert into zxtesting (id, name, state) values (?, ?, ?)\", [(1000, 'this,has,a,comma', 'and a \" quote')])\n c.execute(\"insert into zxtesting (id, name, state) values (?, ?, ?)\", [(1001, 'this,has,a,comma and a \"', 'and a \" quote')])\n # ORACLE has a problem calling stmt.setObject(index, null)\n c.execute(\"insert into zxtesting (id, name, state) values (?, ?, ?)\", [(1010, '\"this,has,a,comma\"', None)], {2:zxJDBC.VARCHAR})\n self.db.commit()\n finally:\n self.db.rollback()\n c.close()\n\n dbSource = DBSource(src, c.datahandler.__class__, \"zxtesting\", None, None, None)\n\n cnt = Pipe().pipe(dbSource, csvSink) - 1 # ignore the header row\n\n finally:\n writer.close()\n src.close()\n os.remove(fn)", "metadata": "root.BCPTestCase.testCSVPipe", "header": "['class', 'BCPTestCase', '(', 'zxJDBCTestCase', ')', ':', '___EOS___']", "index": 1060 } ]

[ { "span": "tempfile.mktemp(),", "start_line": 472, "start_column": 18, "end_line": 472, "end_column": 35 }, { "span": "tempfile.mktemp()", "start_line": 960, "start_column": 13, "end_line": 960, "end_column": 30 }, { "span": "tempfile.mktemp(),", "start_line": 1028, "start_column": 26, "end_line": 1028, "end_column": 43 }, { "span": "tempfile.mktemp(suffix=\"csv\")", "start_line": 1069, "start_column": 17, "end_line": 1069, "end_column": 46 } ]

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[ { "content": " def test_expires(self):\n \"\"\"\n Test simply expiry case\n \"\"\"\n\n clock = task.Clock()\n am = AddrMap()\n am.scheduler = IReactorTime(clock)\n\n now = datetime.datetime.now() + datetime.timedelta(seconds=10)\n nowutc = datetime.datetime.utcnow() + datetime.timedelta(seconds=10)\n line = 'www.example.com 72.30.2.43 \"%s\" EXPIRES=\"%s\"' % (now.strftime(self.fmt), nowutc.strftime(self.fmt))\n\n am.update(line)\n\n self.assertTrue('www.example.com' in am.addr)\n # advance time past when the expiry should have occurred\n clock.advance(10)\n self.assertTrue('www.example.com' not in am.addr)", "metadata": "root.AddrMapTests.test_expires", "header": "['class', 'AddrMapTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 43 }, { "content": " def test_expires_never(self):\n \"\"\"\n Test a NEVER expires line, as in what we'd get a startup for a\n configured address-mapping.\n \"\"\"\n\n clock = task.Clock()\n am = AddrMap()\n am.scheduler = IReactorTime(clock)\n\n line = 'www.example.com 72.30.2.43 \"NEVER\"'\n am.update(line)\n\n self.assertTrue('www.example.com' in am.addr)\n self.assertEqual(len(clock.getDelayedCalls()), 0)", "metadata": "root.AddrMapTests.test_expires_never", "header": "['class', 'AddrMapTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 63 }, { "content": " def test_expires_old(self):\n \"\"\"\n Test something that expires before \"now\"\n \"\"\"\n\n clock = task.Clock()\n am = AddrMap()\n am.scheduler = IReactorTime(clock)\n\n now = datetime.datetime.now() + datetime.timedelta(seconds=-10)\n nowutc = datetime.datetime.utcnow() + datetime.timedelta(seconds=-10)\n line = 'www.example.com 72.30.2.43 \"%s\" EXPIRES=\"%s\"' % (now.strftime(self.fmt), nowutc.strftime(self.fmt))\n\n am.update(line)\n self.assertTrue('www.example.com' in am.addr)\n # arguably we shouldn't even have put this in the map maybe,\n # but the reactor needs to iterate before our expiry callback\n # gets called (right away) which is simulated by the\n # clock.advance call\n clock.advance(0)\n self.assertTrue('www.example.com' not in am.addr)", "metadata": "root.AddrMapTests.test_expires_old", "header": "['class', 'AddrMapTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 79 }, { "content": " def test_expires_with_update(self):\n \"\"\"\n This test updates the expiry time and checks that we properly\n delay our expiry callback.\n \"\"\"\n clock = task.Clock()\n am = AddrMap()\n am.scheduler = IReactorTime(clock)\n\n # now do an actual update to an existing Addr entry.\n now = datetime.datetime.now() + datetime.timedelta(seconds=10)\n nowutc = datetime.datetime.utcnow() + datetime.timedelta(seconds=10)\n line = 'www.example.com 72.30.2.43 \"%s\" EXPIRES=\"%s\"' % (now.strftime(self.fmt), nowutc.strftime(self.fmt))\n am.update(line)\n self.assertTrue(am.find('www.example.com'))\n\n # the update\n now = datetime.datetime.now() + datetime.timedelta(seconds=20)\n nowutc = datetime.datetime.utcnow() + datetime.timedelta(seconds=20)\n line = 'www.example.com 72.30.2.43 \"%s\" EXPIRES=\"%s\"' % (now.strftime(self.fmt), nowutc.strftime(self.fmt))\n am.update(line)\n self.assertTrue('www.example.com' in am.addr)\n\n # advance time by the old expiry value and we should still\n # find the entry\n clock.advance(10)\n self.assertTrue('www.example.com' in am.addr)\n\n # ...but advance past the new expiry (another 10 seconds) and\n # it should vanish\n clock.advance(10)\n self.assertTrue('www.example.com' not in am.addr)", "metadata": "root.AddrMapTests.test_expires_with_update", "header": "['class', 'AddrMapTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 101 }, { "content": " def test_8596_cached_1(self):\n clock = task.Clock()\n am = AddrMap()\n am.scheduler = IReactorTime(clock)\n\n line = 'example.com 192.0.2.1 NEVER CACHED=\"YES\"'\n am.update(line)\n\n self.assertTrue('example.com' in am.addr)\n self.assertEqual(len(clock.getDelayedCalls()), 0)", "metadata": "root.AddrMapTests.test_8596_cached_1", "header": "['class', 'AddrMapTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 134 }, { "content": " def test_8596_cached_2(self):\n clock = task.Clock()\n am = AddrMap()\n am.scheduler = IReactorTime(clock)\n\n line = 'example.com 192.0.43.10 \"2013-04-03 22:29:11\" EXPIRES=\"2013-04-03 20:29:11\" CACHED=\"NO\"'\n am.update(line)\n\n self.assertTrue('example.com' in am.addr)\n self.assertEqual(len(clock.getDelayedCalls()), 1)", "metadata": "root.AddrMapTests.test_8596_cached_2", "header": "['class', 'AddrMapTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 145 }, { "content": " def test_8596_cached_3(self):\n clock = task.Clock()\n am = AddrMap()\n am.scheduler = IReactorTime(clock)\n\n line = 'example.invalid <error> \"2013-04-03 08:28:52\" error=yes EXPIRES=\"2013-04-03 06:28:52\" CACHE=\"NO\"'\n am.update(line)\n\n self.assertTrue('example.invalid' not in am.addr)\n self.assertEqual(len(clock.getDelayedCalls()), 0)", "metadata": "root.AddrMapTests.test_8596_cached_3", "header": "['class', 'AddrMapTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 156 } ]

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[ { "content": " def __init__(self, akey = None, skey = None, token = None, hostname = \"api.beebotte.com\", port = \"80\", ssl = False):\n if akey and skey and token == None :\n self.akey = akey\n self.skey = skey\n elif akey == None and skey == None and token:\n self.token = token\n else:\n raise InitializationError(\"Initialization Error; Message: You must specify either (1) your access and secret keys pair or (2) your channel token!\")\n\n self.hostname = hostname\n self.port = port\n self.ssl = ssl", "metadata": "root.BBT.__init__", "header": "['class', 'BBT', ':', '___EOS___']", "index": 41 }, { "content": " def getUserConnections(self, userid = None, sid = None):\n if self.skey == None:\n raise AuthenticationError(\"Authentication Error; Message: This method requires access key and secret key authentication!\")\n\n endpoint = __connectionsEndpoint__\n query = None\n if userid != None:\n endpoint = \"%s/%s\" % ( __connectionsEndpoint__, userid )\n elif sid != None:\n query = {'sid': sid}\n\n response = self.__getData__( endpoint, query, True )\n return response;", "metadata": "root.BBT.getUserConnections", "header": "['class', 'BBT', ':', '___EOS___']", "index": 448 }, { "content": " def dropUserConnection(self, userid, sid = None):\n if self.skey == None:\n raise AuthenticationError(\"Authentication Error; Message: This method requires access key and secret key authentication!\")\n\n query = None\n if sid != None:\n query = {'sid': sid}\n\n endpoint = \"%s/drop/%s\" % ( __connectionsEndpoint__, userid )\n response = self.__deleteData__( endpoint, query, True )\n return response;", "metadata": "root.BBT.dropUserConnection", "header": "['class', 'BBT', ':', '___EOS___']", "index": 471 }, { "content": " def getResource(self, channel, resource = None):\n if self.skey == None:\n raise AuthenticationError(\"Authentication Error; Message: This method requires access key and secret key authentication!\")\n\n endpoint = \"%s/%s/resources\" % ( __channelsEndpoint__, channel )\n\n if resource != None:\n endpoint = \"%s/%s\" % ( endpoint, resource )\n\n response = self.__getData__( endpoint, None, True )\n return response;", "metadata": "root.BBT.getResource", "header": "['class', 'BBT', ':', '___EOS___']", "index": 496 }, { "content": " def deleteResource(self, channel, resource):\n if self.skey == None:\n raise AuthenticationError(\"Authentication Error; Message: This method requires access key and secret key authentication!\")\n\n endpoint = \"%s/%s/resources/%s\" % ( __channelsEndpoint__, channel, resource )\n response = self.__deleteData__( endpoint, None, True )\n return response;", "metadata": "root.BBT.deleteResource", "header": "['class', 'BBT', ':', '___EOS___']", "index": 516 }, { "content": " def getChannel(self, channel = None):\n if self.skey == None:\n raise AuthenticationError(\"Authentication Error; Message: This method requires access key and secret key authentication!\")\n\n endpoint = __channelsEndpoint__\n\n if channel != None:\n endpoint = \"%s/%s\" % ( endpoint, channel )\n\n response = self.__getData__( endpoint, None, True )\n return response;", "metadata": "root.BBT.getChannel", "header": "['class', 'BBT', ':', '___EOS___']", "index": 531 }, { "content": " def deleteChannel(self, channel):\n if self.skey == None:\n raise AuthenticationError(\"Authentication Error; Message: This method requires access key and secret key authentication!\")\n\n endpoint = \"%s/%s\" % ( __channelsEndpoint__, channel )\n response = self.__deleteData__( endpoint, None, True )\n return response;", "metadata": "root.BBT.deleteChannel", "header": "['class', 'BBT', ':', '___EOS___']", "index": 550 }, { "content": " def regenerateChannelToken(self, channel):\n if self.skey == None:\n raise AuthenticationError(\"Authentication Error; Message: This method requires access key and secret key authentication!\")\n\n endpoint = \"%s/%s/token/regenerate\" % ( __channelsEndpoint__, channel )\n\n response = self.__getData__( endpoint, None, True )\n return response;", "metadata": "root.BBT.regenerateChannelToken", "header": "['class', 'BBT', ':', '___EOS___']", "index": 566 } ]

[ { "span": "token == None ", "start_line": 42, "start_column": 25, "end_line": 42, "end_column": 38 }, { "span": "akey == None ", "start_line": 45, "start_column": 9, "end_line": 45, "end_column": 21 }, { "span": "skey == None ", "start_line": 45, "start_column": 26, "end_line": 45, "end_column": 38 }, { "span": "self.skey == None:", "start_line": 449, "start_column": 7, "end_line": 449, "end_column": 24 }, { "span": "self.skey == None:", "start_line": 472, "start_column": 7, "end_line": 472, "end_column": 24 }, { "span": "self.skey == None:", "start_line": 497, "start_column": 7, "end_line": 497, "end_column": 24 }, { "span": "self.skey == None:", "start_line": 517, "start_column": 7, "end_line": 517, "end_column": 24 }, { "span": "self.skey == None:", "start_line": 532, "start_column": 7, "end_line": 532, "end_column": 24 }, { "span": "self.skey == None:", "start_line": 551, "start_column": 7, "end_line": 551, "end_column": 24 }, { "span": "self.skey == None:", "start_line": 567, "start_column": 7, "end_line": 567, "end_column": 24 } ]

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[ { "content": "def chain_compose_after_inplace_chain_test():\n a = PointCloud(np.random.random([10, 2]))\n b = PointCloud(np.random.random([10, 2]))\n\n t = Translation([3, 4])\n s = Scale([4, 2])\n chain_1 = TransformChain([t, s])\n chain_2 = TransformChain([s.pseudoinverse(), t.pseudoinverse()])\n chain_1.compose_before_inplace(chain_2)\n\n points = PointCloud(np.random.random([10, 2]))\n chain_res = chain_1.apply(points)\n assert(np.allclose(points.points, chain_res.points))", "metadata": "root.chain_compose_after_inplace_chain_test", "header": "['module', '___EOS___']", "index": 156 } ]

[ { "span": "a ", "start_line": 157, "start_column": 4, "end_line": 157, "end_column": 5 }, { "span": "b ", "start_line": 158, "start_column": 4, "end_line": 158, "end_column": 5 } ]

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[ { "content": "#!/usr/bin/env python\n# -*- coding: utf-8 -*-\n\nfrom __future__ import absolute_import\n\nimport os\nfrom os import path\nimport unittest\n\nfrom click.testing import CliRunner\nfrom tldr import cli\nimport mock\n\n\nROOT = path.dirname(path.realpath(__file__))\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import os", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 9 } ]

[]

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[ { "content": " def __init__(self, buf = None, method = None, ruri = None, sipver = 'SIP/2.0', to = None, fr0m = None, via = None, cseq = None, \\\n callid = None, maxforwards = None, body = None, contact = None, routes = (), target = None, cguid = None,\n user_agent = None, expires = None):\n SipMsg.__init__(self, buf)\n if buf != None:\n return\n self.method = method\n self.ruri = ruri\n if target == None:\n if len(routes) == 0:\n self.setTarget(self.ruri.getAddr())\n else:\n self.setTarget(routes[0].getAddr())\n else:\n self.setTarget(target)\n self.sipver = sipver\n self.appendHeader(SipHeader(name = 'via', body = via))\n if via == None:\n self.getHFBody('via').genBranch()\n self.appendHeaders([SipHeader(name = 'route', body = x) for x in routes])\n self.appendHeader(SipHeader(name = 'max-forwards', body = maxforwards))\n self.appendHeader(SipHeader(name = 'from', body = fr0m))\n if to == None:\n to = SipTo(address = SipAddress(url = ruri))\n self.appendHeader(SipHeader(name = 'to', body = to))\n self.appendHeader(SipHeader(name = 'call-id', body = callid))\n self.appendHeader(SipHeader(name = 'cseq', body = SipCSeq(cseq = cseq, method = method)))\n if contact != None:\n self.appendHeader(SipHeader(name = 'contact', body = contact))\n if expires == None and method == 'INVITE':\n expires = SipHeader(name = 'expires')\n self.appendHeader(expires)\n elif expires != None:\n expires = SipHeader(name = 'expires', body = expires)\n self.appendHeader(expires)\n if user_agent != None:\n self.user_agent = user_agent\n self.appendHeader(SipHeader(name = 'user-agent', bodys = user_agent))\n else:\n self.appendHeader(SipHeader(name = 'user-agent'))\n if cguid != None:\n self.appendHeader(SipHeader(name = 'cisco-guid', body = cguid))\n self.appendHeader(SipHeader(name = 'h323-conf-id', body = cguid))\n if body != None:\n self.setBody(body)", "metadata": "root.SipRequest.__init__", "header": "['class', 'SipRequest', '(', 'SipMsg', ')', ':', '___EOS___']", "index": 41 }, { "content": " def genACK(self, to = None):\n if to == None:\n to = self.getHFBody('to').getCopy()\n maxforwards = self.getHFBodys('max-forwards')\n if len(maxforwards) > 0:\n maxforward = maxforwards[0].getCopy()\n else:\n maxforward = None\n return SipRequest(method = 'ACK', ruri = self.ruri.getCopy(), sipver = self.sipver, \\\n fr0m = self.getHFBCopy('from'), to = to, \\\n via = self.getHFBCopy('via'), callid = self.getHFBCopy('call-id'), \\\n cseq = self.getHFBody('cseq').getCSeqNum(), maxforwards = maxforward, \\\n user_agent = self.user_agent)", "metadata": "root.SipRequest.genACK", "header": "['class', 'SipRequest', '(', 'SipMsg', ')', ':', '___EOS___']", "index": 114 }, { "content": " def genRequest(self, method, cseq = None):\n if cseq == None:\n cseq = self.getHFBody('cseq').getCSeqNum()\n maxforwards = self.getHFBodys('max-forwards')\n if len(maxforwards) > 0:\n maxforward = maxforwards[0].getCopy()\n else:\n maxforward = None\n expires = self.getHFBodys('expires')\n if len(expires) > 0:\n expires = expires[0].getCopy()\n else:\n expires = None\n return SipRequest(method = method, ruri = self.ruri.getCopy(), sipver = self.sipver, \\\n fr0m = self.getHFBCopy('from'), to = self.getHFBCopy('to'), \\\n via = self.getHFBCopy('via'), callid = self.getHFBCopy('call-id'), \\\n cseq = cseq, maxforwards = maxforward, \\\n user_agent = self.user_agent, expires = expires)", "metadata": "root.SipRequest.genRequest", "header": "['class', 'SipRequest', '(', 'SipMsg', ')', ':', '___EOS___']", "index": 141 } ]

[ { "span": "target == None:", "start_line": 49, "start_column": 11, "end_line": 49, "end_column": 25 }, { "span": "via == None:", "start_line": 58, "start_column": 11, "end_line": 58, "end_column": 22 }, { "span": "to == None:", "start_line": 63, "start_column": 11, "end_line": 63, "end_column": 21 }, { "span": "expires == None ", "start_line": 70, "start_column": 11, "end_line": 70, "end_column": 26 }, { "span": "to == None:", "start_line": 115, "start_column": 11, "end_line": 115, "end_column": 21 }, { "span": "cseq == None:", "start_line": 142, "start_column": 11, "end_line": 142, "end_column": 23 } ]

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"ri_", "._", "get", "Copy_", "(_", ")_", ",_", "sip", "ver_", "=_", "self_", "._", "sip", "ver_", ",_", "fr", "0", "m_", "=_", "self_", "._", "get", "HF", "BC", "opy_", "(_", "'", "from", "'_", ")_", ",_", "to_", "=_", "self_", "._", "get", "HF", "BC", "opy_", "(_", "'", "to", "'_", ")_", ",_", "via_", "=_", "self_", "._", "get", "HF", "BC", "opy_", "(_", "'", "via", "'_", ")_", ",_", "call", "id_", "=_", "self_", "._", "get", "HF", "BC", "opy_", "(_", "'", "call", "-", "id", "'_", ")_", ",_", "cse", "q_", "=_", "cse", "q_", ",_", "maxf", "or", "ward", "s_", "=_", "maxf", "or", "ward", "_", ",_", "user", "\\u", "agent_", "=_", "self_", "._", "user", "\\u", "agent_", ",_", "expires_", "=_", "expires_", ")_" ]

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[ { "content": " @classmethod\n def get_desc(cls,name):\n try:\n return cls.desc[name][1]\n except:\n return None", "metadata": "root._constants.get_desc", "header": "['class', '_constants', '(', 'object', ')', ':', '___EOS___']", "index": 49 }, { "content": " @classmethod\n def get_default_collation(cls, charset):\n \"\"\"Retrieves the default collation for given character set\n \n Raises ProgrammingError when character set is not supported.\n \n Returns list (collation, charset, index)\n \"\"\"\n if isinstance(charset, int):\n try:\n c = cls.desc[charset]\n return c[1], c[0], charset\n except:\n ProgrammingError(\"Character set ID '%s' unsupported.\" % (\n charset))\n \n for cid, c in enumerate(cls.desc):\n if c is None:\n continue\n if c[0] == charset and c[2] is True:\n return c[1], c[0], cid\n \n raise ProgrammingError(\"Character set '%s' unsupported.\" % (charset))", "metadata": "root.CharacterSet.get_default_collation", "header": "['class', 'CharacterSet', '(', '_constants', ')', ':', '___EOS___']", "index": 708 } ]

[ { "span": "except:", "start_line": 53, "start_column": 8, "end_line": 53, "end_column": 15 }, { "span": "except:", "start_line": 720, "start_column": 10, "end_line": 720, "end_column": 17 } ]

[]

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[ { "content": " def analyse_text(text):\n return shebang_matches(text, r'julia')", "metadata": "root.JuliaLexer.analyse_text", "header": "['class', 'JuliaLexer', '(', 'RegexLexer', ')', ':', '___EOS___']", "index": 137 }, { "content": " def analyse_text(text):\n if re.match('^\\s*%', text, re.M): # comment\n return 0.9\n elif re.match('^!\\w+', text, re.M): # system cmd\n return 0.9\n return 0.1", "metadata": "root.MatlabLexer.analyse_text", "header": "['class', 'MatlabLexer', '(', 'RegexLexer', ')', ':', '___EOS___']", "index": 370 }, { "content": " def analyse_text(text):\n if re.match('^\\s*[%#]', text, re.M): #Comment\n return 0.1", "metadata": "root.OctaveLexer.analyse_text", "header": "['class', 'OctaveLexer', '(', 'RegexLexer', ')', ':', '___EOS___']", "index": 819 }, { "content": " def analyse_text(text):\n return '<-' in text", "metadata": "root.SLexer.analyse_text", "header": "['class', 'SLexer', '(', 'RegexLexer', ')', ':', '___EOS___']", "index": 1108 }, { "content": " def analyse_text(text):\n if re.search(r\"^\\s*model\\s*{\", text, re.M):\n return 0.7\n else:\n return 0.0", "metadata": "root.BugsLexer.analyse_text", "header": "['class', 'BugsLexer', '(', 'RegexLexer', ')', ':', '___EOS___']", "index": 1202 }, { "content": " def analyse_text(text):\n if re.search(r'^\\s*model\\s*\\{', text, re.M):\n if re.search(r'^\\s*data\\s*\\{', text, re.M):\n return 0.9\n elif re.search(r'^\\s*var', text, re.M):\n return 0.9\n else:\n return 0.3\n else:\n return 0", "metadata": "root.JagsLexer.analyse_text", "header": "['class', 'JagsLexer', '(', 'RegexLexer', ')', ':', '___EOS___']", "index": 1284 }, { "content": " def analyse_text(text):\n if re.search(r'^\\s*parameters\\s*\\{', text, re.M):\n return 1.0\n else:\n return 0.0", "metadata": "root.StanLexer.analyse_text", "header": "['class', 'StanLexer', '(', 'RegexLexer', ')', ':', '___EOS___']", "index": 1367 } ]

[ { "span": "def analyse_text(text):", "start_line": 137, "start_column": 4, "end_line": 137, "end_column": 27 }, { "span": "def analyse_text(text):", "start_line": 370, "start_column": 4, "end_line": 370, "end_column": 27 }, { "span": "def analyse_text(text):", "start_line": 819, "start_column": 4, "end_line": 819, "end_column": 27 }, { "span": "def analyse_text(text):", "start_line": 1108, "start_column": 4, "end_line": 1108, "end_column": 27 }, { "span": "def analyse_text(text):", "start_line": 1202, "start_column": 4, "end_line": 1202, "end_column": 27 }, { "span": "def analyse_text(text):", "start_line": 1284, "start_column": 4, "end_line": 1284, "end_column": 27 }, { "span": "def analyse_text(text):", "start_line": 1367, "start_column": 4, "end_line": 1367, "end_column": 27 } ]

[]

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[ { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n b = inCoeffs[1]\n\n try:\n temp = a * numpy.power(x_in, (b/x_in))\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.Geometric_Modified.CalculateModelPredictions", "header": "['class', 'Geometric_Modified', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 59 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n b = inCoeffs[1]\n\n try:\n temp = a * numpy.power(b, x_in)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.PowerA_Modified.CalculateModelPredictions", "header": "['class', 'PowerA_Modified', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 114 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n b = inCoeffs[1]\n c = inCoeffs[2]\n d = inCoeffs[3]\n\n try:\n temp = a * numpy.power(b, c * x_in + d)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.PowerA_Modified_Transform.CalculateModelPredictions", "header": "['class', 'PowerA_Modified_Transform', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 163 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_LogX = inDataCacheDictionary['LogX'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n\n try:\n temp = numpy.power(a, x_LogX)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.PowerB_Modified.CalculateModelPredictions", "header": "['class', 'PowerB_Modified', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 214 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n b = inCoeffs[1]\n c = inCoeffs[2]\n\n try:\n temp = numpy.power(a, numpy.log(b * x_in + c))\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.PowerB_Modified_Transform.CalculateModelPredictions", "header": "['class', 'PowerB_Modified_Transform', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 262 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n b = inCoeffs[1]\n\n try:\n temp = numpy.power(a + x_in, b)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.PowerC_Modified.CalculateModelPredictions", "header": "['class', 'PowerC_Modified', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 312 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n b = inCoeffs[1]\n c = inCoeffs[2]\n\n try:\n temp = numpy.power(a + b * x_in, c)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.PowerC_Modified_Transform.CalculateModelPredictions", "header": "['class', 'PowerC_Modified_Transform', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 361 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n C = inCoeffs[0]\n T = inCoeffs[1]\n K = inCoeffs[2]\n\n try:\n temp = C * numpy.power(x_in, -1.0 * T) * numpy.exp(-1.0 * x_in / K)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.PowerLawExponentialCutoff.CalculateModelPredictions", "header": "['class', 'PowerLawExponentialCutoff', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 411 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n PowX_Neg1 = inDataCacheDictionary['PowX_-1.0'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n\n try:\n temp = numpy.power(a, PowX_Neg1)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.PowerRoot.CalculateModelPredictions", "header": "['class', 'PowerRoot', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 461 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n\n try:\n temp = numpy.power(x_in, a)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.SimplePower.CalculateModelPredictions", "header": "['class', 'SimplePower', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 509 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n b = inCoeffs[1]\n\n try:\n temp = a * numpy.power(x_in, (b*x_in))\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.StandardGeometric.CalculateModelPredictions", "header": "['class', 'StandardGeometric', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 557 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n b = inCoeffs[1]\n\n try:\n temp = a * numpy.power(x_in, b)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.StandardPower.CalculateModelPredictions", "header": "['class', 'StandardPower', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 606 }, { "content": " def CalculateModelPredictions(self, inCoeffs, inDataCacheDictionary):\n x_in = inDataCacheDictionary['X'] # only need to perform this dictionary look-up once\n \n a = inCoeffs[0]\n b = inCoeffs[1]\n c = inCoeffs[2]\n\n try:\n temp = a * numpy.power((x_in-b), c)\n return self.extendedVersionHandler.GetAdditionalModelPredictions(temp, inCoeffs, inDataCacheDictionary, self)\n except:\n return numpy.ones(len(inDataCacheDictionary['DependentData'])) * 1.0E300", "metadata": "root.XShiftedPower.CalculateModelPredictions", "header": "['class', 'XShiftedPower', '(', 'pyeq2', '.', 'Model_2D_BaseClass', '.', 'Model_2D_BaseClass', ')', ':', '___EOS___']", "index": 655 } ]

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[ { "content": "# Copyright (C) 2009-2014 Wander Lairson Costa\n#\n# The following terms apply to all files associated\n# with the software unless explicitly disclaimed in individual files.\n#\n# The authors hereby grant permission to use, copy, modify, distribute,\n# and license this software and its documentation for any purpose, provided\n# that existing copyright notices are retained in all copies and that this\n# notice is included verbatim in any distributions. No written agreement,\n# license, or royalty fee is required for any of the authorized uses.\n# Modifications to this software may be copyrighted by their authors\n# and need not follow the licensing terms described here, provided that\n# the new terms are clearly indicated on the first page of each file where\n# they apply.\n#\n# IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY\n# FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES\n# ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY\n# DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE\n# POSSIBILITY OF SUCH DAMAGE.\n#\n# THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES,\n# INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY,\n# FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. THIS SOFTWARE\n# IS PROVIDED ON AN \"AS IS\" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE\n# NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR\n# MODIFICATIONS.\n\nr\"\"\"usb.util - Utility functions.\n\nThis module exports:\n\nendpoint_address - return the endpoint absolute address.\nendpoint_direction - return the endpoint transfer direction.\nendpoint_type - return the endpoint type\nctrl_direction - return the direction of a control transfer\nbuild_request_type - build a bmRequestType field of a control transfer.\nfind_descriptor - find an inner descriptor.\nclaim_interface - explicitly claim an interface.\nrelease_interface - explicitly release an interface.\ndispose_resources - release internal resources allocated by the object.\nget_langids - retrieve the list of supported string languages from the device.\nget_string - retrieve a string descriptor from the device.\n\"\"\"\n\n__author__ = 'Wander Lairson Costa'\n\nimport operator\nimport array\nfrom sys import hexversion\nimport usb._interop as _interop\n\n# descriptor type\nDESC_TYPE_DEVICE = 0x01\nDESC_TYPE_CONFIG = 0x02\nDESC_TYPE_STRING = 0x03\nDESC_TYPE_INTERFACE = 0x04\nDESC_TYPE_ENDPOINT = 0x05\n\n# endpoint direction\nENDPOINT_IN = 0x80\nENDPOINT_OUT = 0x00\n\n# endpoint type\nENDPOINT_TYPE_CTRL = 0x00\nENDPOINT_TYPE_ISO = 0x01\nENDPOINT_TYPE_BULK = 0x02\nENDPOINT_TYPE_INTR = 0x03\n\n# control request type\nCTRL_TYPE_STANDARD = (0 << 5)\nCTRL_TYPE_CLASS = (1 << 5)\nCTRL_TYPE_VENDOR = (2 << 5)\nCTRL_TYPE_RESERVED = (3 << 5)\n\n# control request recipient\nCTRL_RECIPIENT_DEVICE = 0\nCTRL_RECIPIENT_INTERFACE = 1\nCTRL_RECIPIENT_ENDPOINT = 2\nCTRL_RECIPIENT_OTHER = 3\n\n# control request direction\nCTRL_OUT = 0x00\nCTRL_IN = 0x80\n\n_ENDPOINT_ADDR_MASK = 0x0f\n_ENDPOINT_DIR_MASK = 0x80\n_ENDPOINT_TRANSFER_TYPE_MASK = 0x03\n_CTRL_DIR_MASK = 0x80\n\n# For compatibility between Python 2 and 3\n_dummy_s = '\\x00'.encode('utf-8')\n\n# speed type\nSPEED_LOW = 1\nSPEED_FULL = 2\nSPEED_HIGH = 3\nSPEED_SUPER = 4\nSPEED_UNKNOWN = 0\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def endpoint_address(address):\n r\"\"\"Return the endpoint absolute address.\n\n The address parameter is the bEndpointAddress field\n of the endpoint descriptor.\n \"\"\"\n return address & _ENDPOINT_ADDR_MASK", "metadata": "root.endpoint_address", "header": "['module', '___EOS___']", "index": 100 }, { "content": "def endpoint_direction(address):\n r\"\"\"Return the endpoint direction.\n\n The address parameter is the bEndpointAddress field\n of the endpoint descriptor.\n The possible return values are ENDPOINT_OUT or ENDPOINT_IN.\n \"\"\"\n return address & _ENDPOINT_DIR_MASK", "metadata": "root.endpoint_direction", "header": "['module', '___EOS___']", "index": 108 }, { "content": "def endpoint_type(bmAttributes):\n r\"\"\"Return the transfer type of the endpoint.\n\n The bmAttributes parameter is the bmAttributes field\n of the endpoint descriptor.\n The possible return values are: ENDPOINT_TYPE_CTRL,\n ENDPOINT_TYPE_ISO, ENDPOINT_TYPE_BULK or ENDPOINT_TYPE_INTR.\n \"\"\"\n return bmAttributes & _ENDPOINT_TRANSFER_TYPE_MASK", "metadata": "root.endpoint_type", "header": "['module', '___EOS___']", "index": 117 }, { "content": "def ctrl_direction(bmRequestType):\n r\"\"\"Return the direction of a control request.\n\n The bmRequestType parameter is the value of the\n bmRequestType field of a control transfer.\n The possible return values are CTRL_OUT or CTRL_IN.\n \"\"\"\n return bmRequestType & _CTRL_DIR_MASK", "metadata": "root.ctrl_direction", "header": "['module', '___EOS___']", "index": 127 }, { "content": "def build_request_type(direction, type, recipient):\n r\"\"\"Build a bmRequestType field for control requests.\n\n These is a conventional function to build a bmRequestType\n for a control request.\n\n The direction parameter can be CTRL_OUT or CTRL_IN.\n The type parameter can be CTRL_TYPE_STANDARD, CTRL_TYPE_CLASS,\n CTRL_TYPE_VENDOR or CTRL_TYPE_RESERVED values.\n The recipient can be CTRL_RECIPIENT_DEVICE, CTRL_RECIPIENT_INTERFACE,\n CTRL_RECIPIENT_ENDPOINT or CTRL_RECIPIENT_OTHER.\n\n Return the bmRequestType value.\n \"\"\"\n return recipient | type | direction", "metadata": "root.build_request_type", "header": "['module', '___EOS___']", "index": 136 }, { "content": "def create_buffer(length):\n r\"\"\"Create a buffer to be passed to a read function.\n\n A read function may receive an out buffer so the data\n is read inplace and the object can be reused, avoiding\n the overhead of creating a new object at each new read\n call. This function creates a compatible sequence buffer\n of the given length.\n \"\"\"\n return array.array('B', _dummy_s * length)", "metadata": "root.create_buffer", "header": "['module', '___EOS___']", "index": 152 }, { "content": "def find_descriptor(desc, find_all=False, custom_match=None, **args):\n r\"\"\"Find an inner descriptor.\n\n find_descriptor works in the same way as the core.find() function does,\n but it acts on general descriptor objects. For example, suppose you\n have a Device object called dev and want a Configuration of this\n object with its bConfigurationValue equals to 1, the code would\n be like so:\n\n >>> cfg = util.find_descriptor(dev, bConfigurationValue=1)\n\n You can use any field of the Descriptor as a match criteria, and you\n can supply a customized match just like core.find() does. The\n find_descriptor function also accepts the find_all parameter to get\n an iterator instead of just one descriptor.\n \"\"\"\n def desc_iter(**kwargs):\n for d in desc:\n tests = (val == getattr(d, key) for key, val in kwargs.items())\n if _interop._all(tests) and (custom_match is None or custom_match(d)):\n yield d\n\n if find_all:\n return desc_iter(**args)\n else:\n try:\n return _interop._next(desc_iter(**args))\n except StopIteration:\n return None", "metadata": "root.find_descriptor", "header": "['module', '___EOS___']", "index": 163 }, { "content": "def claim_interface(device, interface):\n r\"\"\"Explicitly claim an interface.\n\n PyUSB users normally do not have to worry about interface claiming,\n as the library takes care of it automatically. But there are situations\n where you need deterministic interface claiming. For these uncommon\n cases, you can use claim_interface.\n\n If the interface is already claimed, either through a previously call\n to claim_interface or internally by the device object, nothing happens.\n \"\"\"\n device._ctx.managed_claim_interface(device, interface)", "metadata": "root.claim_interface", "header": "['module', '___EOS___']", "index": 193 }, { "content": "def release_interface(device, interface):\n r\"\"\"Explicitly release an interface.\n\n This function is used to release an interface previously claimed,\n either through a call to claim_interface or internally by the\n device object.\n\n Normally, you do not need to worry about claiming policies, as\n the device object takes care of it automatically.\n \"\"\"\n device._ctx.managed_release_interface(device, interface)", "metadata": "root.release_interface", "header": "['module', '___EOS___']", "index": 206 }, { "content": "def dispose_resources(device):\n r\"\"\"Release internal resources allocated by the object.\n\n Sometimes you need to provide deterministic resources\n freeing, for example to allow another application to\n talk to the device. As Python does not provide deterministic\n destruction, this function releases all internal resources\n allocated by the device, like device handle and interface\n policy.\n\n After calling this function, you can continue using the device\n object normally. If the resources will be necessary again, it\n will be allocated automatically.\n \"\"\"\n device._ctx.dispose(device)", "metadata": "root.dispose_resources", "header": "['module', '___EOS___']", "index": 218 }, { "content": "def get_langids(dev):\n r\"\"\"Retrieve the list of supported Language IDs from the device.\n\n Most client code should not call this function directly, but instead use\n the langids property on the Device object, which will call this function as\n needed and cache the result.\n\n USB LANGIDs are 16-bit integers familiar to Windows developers, where\n for example instead of en-US you say 0x0409. See the file USB_LANGIDS.pdf\n somewhere on the usb.org site for a list, which does not claim to be\n complete. It requires \"system software must allow the enumeration and\n selection of LANGIDs that are not currently on this list.\" It also requires\n \"system software should never request a LANGID not defined in the LANGID\n code array (string index = 0) presented by a device.\" Client code can\n check this tuple before issuing string requests for a specific language ID.\n\n dev is the Device object whose supported language IDs will be retrieved.\n\n The return value is a tuple of integer LANGIDs, possibly empty if the\n device does not support strings at all (which USB 3.1 r1.0 section\n 9.6.9 allows). In that case client code should not request strings at all.\n\n A USBError may be raised from this function for some devices that have no\n string support, instead of returning an empty tuple. The accessor for the\n langids property on Device catches that case and supplies an empty tuple,\n so client code can ignore this detail by using the langids property instead\n of directly calling this function.\n \"\"\"\n from usb.control import get_descriptor\n buf = get_descriptor(\n dev,\n 254,\n DESC_TYPE_STRING,\n 0\n )\n\n # The array is retrieved by asking for string descriptor zero, which is\n # never the index of a real string. The returned descriptor has bLength\n # and bDescriptorType bytes followed by pairs of bytes representing\n # little-endian LANGIDs. That is, buf[0] contains the length of the\n # returned array, buf[2] is the least-significant byte of the first LANGID\n # (if any), buf[3] is the most-significant byte, and in general the LSBs of\n # all the LANGIDs are given by buf[2:buf[0]:2] and MSBs by buf[3:buf[0]:2].\n # If the length of buf came back odd, something is wrong.\n\n if len(buf) < 4 or buf[0] < 4 or buf[0]&1 != 0:\n return ()\n\n return tuple(map(lambda x,y: x+(y<<8), buf[2:buf[0]:2], buf[3:buf[0]:2]))", "metadata": "root.get_langids", "header": "['module', '___EOS___']", "index": 234 }, { "content": "def get_string(dev, index, langid = None):\n r\"\"\"Retrieve a string descriptor from the device.\n\n dev is the Device object which the string will be read from.\n\n index is the string descriptor index and langid is the Language\n ID of the descriptor. If langid is omitted, the string descriptor\n of the first Language ID will be returned.\n\n Zero is never the index of a real string. The USB spec allows a device to\n use zero in a string index field to indicate that no string is provided.\n So the caller does not have to treat that case specially, this function\n returns None if passed an index of zero, and generates no traffic\n to the device.\n\n The return value is the unicode string present in the descriptor, or None\n if the requested index was zero.\n\n It is a ValueError to request a real string (index not zero), if: the\n device's langid tuple is empty, or with an explicit langid the device does\n not support.\n \"\"\"\n if 0 == index:\n return None\n\n from usb.control import get_descriptor\n langids = dev.langids\n\n if 0 == len(langids):\n raise ValueError(\"The device has no langid\")\n if langid is None:\n langid = langids[0]\n elif langid not in langids:\n raise ValueError(\"The device does not support the specified langid\")\n\n buf = get_descriptor(\n dev,\n 255, # Maximum descriptor size\n DESC_TYPE_STRING,\n index,\n langid\n )\n if hexversion >= 0x03020000:\n return buf[2:buf[0]].tobytes().decode('utf-16-le')\n else:\n return buf[2:buf[0]].tostring().decode('utf-16-le')", "metadata": "root.get_string", "header": "['module', '___EOS___']", "index": 284 } ]

[ { "span": "import operator", "start_line": 47, "start_column": 0, "end_line": 47, "end_column": 15 } ]

[]

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[ { "content": " def test_is_cell_empty(self):\n\n rows = self.model.get_row_count()\n columns = self.model.get_column_count()\n\n self.assertEqual(self.model.is_cell_empty(0,0), True,\n \"Cell containing None should be empty.\")\n self.assertEqual(self.model.is_cell_empty(10,10), True,\n \"Cell outside the range of values should be empty.\")\n\n return", "metadata": "root.CompositeGridModelTestCase.test_is_cell_empty", "header": "['class', 'CompositeGridModelTestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 62 } ]

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[ { "content": "@app.route('/display/<num>')\ndef display_graph(num=None, sparse=False):\n cursor = g.conn.cursor()\n try:\n cursor.execute(\"SELECT logfile FROM log WHERE id = %s\", (num,));\n history = cursor.fetchone()[0]\n svg = create_svg(history, sparse=sparse)\n if svg is None:\n svg = \"Graph is empty!\"\n except:\n svg = \"Sorry, there's no log file with that id.\"\n return render_template(\"display_graph.html\", svg=svg, num=num)", "metadata": "root.display_graph", "header": "['module', '___EOS___']", "index": 22 } ]

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[ { "content": "''' B{BigJob Documentation}\n\nThis is the BigJob implementation of the Pilot API. Pilot-Jobs (also referred to as\nPilot Compute) decouple system level and application level job management. \n\nThe main concepts and classes exposed by the Compute part of the API are:\n\n - L{PilotCompute} (PC): \n a pilot job, which can execute some compute workload (L{ComputeUnit}).\n\n - L{PilotComputeDescription} (PCD): \n description for specifying the requirements of a \\L{PilotCompute}. \n\n - L{PilotComputeService} (PCS): \n a factory for creating \\L{PilotCompute}s. \n\nThe data side of the Pilot API is symmetric to the compute side. The exposed\nclasses for managing Pilot Data are:\n\n - L{PilotData} (PD): \n a pilot that manages some data workload (L{DataUnit})\n \n - L{PilotDataDescription} (PDD):\n a abstract description of the requirements of the PD\n\n - L{PilotDataService} (PDS): \n a factory (service) which can create L{PilotData}s according to some\n specification\n\n\nThe application workload is represented by so called L{ComputeUnit}s and L{DataUnit}s: \n \n - L{ComputeUnit} (CU): \n a work item executed on a L{PilotCompute}.\n\n \n - L{DataUnit} (DU): \n a data item managed by a L{PilotData}\n\nBoth Compute and Data Units are specified using an abstract description object:\n\n - L{ComputeUnitDescription} (CUD):\n abstract description of a L{ComputeUnit}.\n \n - L{DataUnitDescription} (DUD):\n abstract description of a L{DataUnit}.\n\n\nThe L{ComputeDataService} represents the central entry point for the application\nworkload:\n\n - L{ComputeDataService} (CDS)\n a service which can map CUs and DUs to a set of Pilot Compute and Pilot Data.\n\nThe L{ComputeDataService} (CDS) takes care of the placement of Compute and Data Units. \nThe set of L{PilotCompute}s and L{PilotData} available to the CDS can be changed during \nthe application's runtime. The CDS different data-compute affinity and will handle\ncompute/data co-locationing for the requested data-compute workload.\n\nPilots, Compute and Data Units are associated with a L{State}.\n\n - L{State<pilot.api.compute.api.State>}: State enumeration\n\n\nB{Example}::\n\n from pilot import PilotComputeService, ComputeDataService, State\n \n pilot_compute_service = PilotComputeService()\n\n # create pilot job service and initiate a pilot job\n pilot_compute_description = {\n \"service_url\": 'fork://localhost',\n \"number_of_processes\": 1, \n \"working_directory\": os.path.join(os.getcwd(),\"work\"),\n 'affinity_datacenter_label': \"eu-de-south\", \n 'affinity_machine_label': \"mymachine\" \n }\n \n pilotjob = pilot_compute_service.create_pilot(pilot_compute_description=pilot_compute_description)\n \n compute_data_service = ComputeDataService()\n compute_data_service.add_pilot_compute_service(pilot_compute_service)\n \n # start work unit\n compute_unit_description = {\n \"executable\": \"/bin/date\",\n \"arguments\": [\"\"],\n \"number_of_processes\": 1, \n \"output\": \"stdout.txt\",\n \"error\": \"stderr.txt\", \n \"affinity_datacenter_label\": \"eu-de-south\", \n \"affinity_machine_label\": \"mymachine\" \n } \n \n compute_unit = compute_data_service.submit_compute_unit(compute_unit_description)\n \n compute_data_service.wait()\n\n compute_data_service.cancel()\n \n\nAll API objects that should be utilized by the application reside in the L{pilot} namespace. The implementation resides in L{pilot.impl}.\n \nPlease, refer to U{https://github.com/saga-project/BigJob/tree/master/examples/pilot-api} for an extensive set of examples.\n'''\n\n\napplication_id = \"bigjob\"\n\n\nfrom pilot.impl.pilotcompute_manager import PilotComputeService\nfrom pilot.impl.pilotcompute_manager import PilotCompute\nfrom pilot.impl.pilotcompute_manager import ComputeUnit\nfrom pilot.impl.pilotdata_manager import PilotDataService\nfrom pilot.impl.pilotdata_manager import PilotData\nfrom pilot.impl.pilotdata_manager import DataUnit\nfrom pilot.impl.pilot_manager import ComputeUnitService, DataUnitService\nfrom pilot.impl.pilot_manager_decentral import ComputeDataServiceDecentral\nfrom pilot.impl.pilot_manager import ComputeDataService as ComputeDataServiceCentral\nfrom pilot.impl.pilot_manager_decentral import ComputeDataServiceDecentral as ComputeDataService\nfrom pilot.api.api import PilotError\nfrom pilot.api import State \nfrom pilot.api import ComputeUnitDescription, DataUnitDescription, PilotComputeDescription\n\nimport bigjob\n\n\"\"\" Version of Pilot-API/BigJob \"\"\"\nversion = bigjob.version\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "from pilot.impl.pilotcompute_manager import PilotComputeService", "start_line": 111, "start_column": 0, "end_line": 111, "end_column": 63 }, { "span": "from pilot.impl.pilotcompute_manager import PilotCompute", "start_line": 112, "start_column": 0, "end_line": 112, "end_column": 56 }, { "span": "from pilot.impl.pilotcompute_manager import ComputeUnit", "start_line": 113, "start_column": 0, "end_line": 113, "end_column": 55 }, { "span": "from pilot.impl.pilotdata_manager import PilotDataService", "start_line": 114, "start_column": 0, "end_line": 114, "end_column": 57 }, { "span": "from pilot.impl.pilotdata_manager import PilotData", "start_line": 115, "start_column": 0, "end_line": 115, "end_column": 50 }, { "span": "from pilot.impl.pilotdata_manager import DataUnit", "start_line": 116, "start_column": 0, "end_line": 116, "end_column": 49 }, { "span": "from pilot.impl.pilot_manager import ComputeUnitService, DataUnitService", "start_line": 117, "start_column": 0, "end_line": 117, "end_column": 72 }, { "span": "from pilot.impl.pilot_manager_decentral import ComputeDataServiceDecentral", "start_line": 118, "start_column": 0, "end_line": 118, "end_column": 74 }, { "span": "from pilot.impl.pilot_manager import ComputeDataService as ComputeDataServiceCentral", "start_line": 119, "start_column": 0, "end_line": 119, "end_column": 84 }, { "span": "from pilot.impl.pilot_manager_decentral import ComputeDataServiceDecentral as ComputeDataService", "start_line": 120, "start_column": 0, "end_line": 120, "end_column": 96 }, { "span": "from pilot.api.api import PilotError", "start_line": 121, "start_column": 0, "end_line": 121, "end_column": 36 }, { "span": "from pilot.api import State ", "start_line": 122, "start_column": 0, "end_line": 122, "end_column": 27 }, { "span": "from pilot.api import ComputeUnitDescription, DataUnitDescription, PilotComputeDescription", "start_line": 123, "start_column": 0, "end_line": 123, "end_column": 90 } ]

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[ { "content": " def answer_request(self, sendData):\n global g_stopEvent\n global g_downloader\n try:\n\n #Pull apart request path\n request_path=self.path[1:] \n request_path=re.sub(r\"\\?.*\",\"\",request_path)\n #If a request to stop is sent, shut down the proxy\n\n if request_path.lower()==\"stop\":# all special web interfaces here\n sys.exit()\n return\n if request_path.lower()==\"favicon.ico\":\n print 'dont have no icone here, may be in future'\n self.wfile.close()\n return\n\n\n (url,proxy,use_proxy_for_chunks,maxbitrate,simpledownloader, auth,streamtype)=self.decode_url(request_path)\n print 'simpledownloaderxxxxxxxxxxxxxxx',simpledownloader\n if streamtype=='' or streamtype==None or streamtype=='none': streamtype='HDS'\n \n if streamtype=='HDS':\n\n print 'Url received at proxy',url,proxy,use_proxy_for_chunks,maxbitrate\n\n\n #Send file request\n #self.handle_send_request(download_id,file_url, file_name, requested_range,download_mode ,keep_file,connections)\n \n downloader=None\n #downloader=g_downloader\n \n if not downloader or downloader.live==True or not (downloader.init_done and downloader.init_url ==url):\n downloader=F4MDownloader()\n if not downloader.init(self.wfile,url,proxy,use_proxy_for_chunks,g_stopEvent,maxbitrate,auth):\n print 'cannot init'\n return\n g_downloader=downloader\n print 'init...' \n \n enableSeek=False\n requested_range=self.headers.getheader(\"Range\")\n if requested_range==None: requested_range=\"\"\n srange, erange=(None,None)\n \n \n \n if downloader.live==False and len(requested_range)>0 and not requested_range==\"bytes=0-0\": #we have to stream?\n enableSeek=True\n (srange, erange) = self.get_range_request(requested_range, downloader.total_frags)\n \n\n print 'PROXY DATA',downloader.live,enableSeek,requested_range,downloader.total_frags,srange, erange\n enableSeek=False ##disabled for time being, couldn't find better way to handle\n \n framgementToSend=0\n inflate=1815002#(6526684-466/3)#*373/downloader.total_frags# 4142*1024*243/8/40 #1#1024*1024\n if enableSeek:\n #rtype=\"video/x-flv\" #just as default\n self.send_response(206)\n rtype=\"flv-application/octet-stream\" #default type could have gone to the server to get it.\n self.send_header(\"Content-Type\", rtype)\n self.send_header(\"Accept-Ranges\",\"bytes\")\n print 'not LIVE,enable seek',downloader.total_frags\n \n totalsize=downloader.total_frags*inflate\n \n framgementToSend=1#downloader.total_frags\n erange=srange+framgementToSend*inflate\n if erange>=totalsize:\n erange=totalsize-1\n \n # crange=\"bytes \"+str(srange)+\"-\" +str(int(downloader.total_frags-1))+\"/\"+str(downloader.total_frags)#recalculate crange based on srange, portionLen and content_size \n # crange=\"bytes \"+str(srange)+\"-\" +str(int(totalsize-1))+\"/\"+str(totalsize)#recalculate crange based on srange, portionLen and content_size \n crange=\"bytes \"+str(srange)+\"-\" +str(int(erange))+\"/*\"#+str(totalsize)#recalculate crange based on srange, portionLen and content_size \n print srange/inflate,erange/inflate,totalsize/inflate\n self.send_header(\"Content-Length\", str(totalsize))\n self.send_header(\"Content-Range\",crange)\n etag=self.generate_ETag(url)\n self.send_header(\"ETag\",etag)\n print crange\n self.send_header(\"Last-Modified\",\"Wed, 21 Feb 2000 08:43:39 GMT\")\n self.send_header(\"Cache-Control\",\"public, must-revalidate\")\n self.send_header(\"Cache-Control\",\"no-cache\")\n self.send_header(\"Pragma\",\"no-cache\")\n self.send_header(\"features\",\"seekable,stridable\")\n self.send_header(\"client-id\",\"12345\")\n self.send_header(\"Connection\", 'close')\n else:\n self.send_response(200)\n rtype=\"flv-application/octet-stream\" #default type could have gone to the server to get it.\n self.send_header(\"Content-Type\", rtype)\n srange=None\n \n elif streamtype=='SIMPLE' or simpledownloader :\n downloader=interalSimpleDownloader();\n if not downloader.init(self.wfile,url,proxy,g_stopEvent,maxbitrate):\n print 'cannot init'\n return\n srange,framgementToSend=(None,None)\n self.send_response(200)\n rtype=\"flv-application/octet-stream\" #default type could have gone to the server to get it.\n self.send_header(\"Content-Type\", rtype)\n srange=None\n elif streamtype=='HLS' or simpledownloader :\n downloader=HLSDownloader()\n if not downloader.init(self.wfile,url,proxy,use_proxy_for_chunks,g_stopEvent,maxbitrate,auth):\n print 'cannot init'\n return\n \n srange,framgementToSend=(None,None)\n self.send_response(200)\n rtype=\"flv-application/octet-stream\" #default type could have gone to the server to get it.\n self.send_header(\"Content-Type\", rtype)\n srange=None\n \n\n #rtype=\"flv-application/octet-stream\" #default type could have gone to the server to get it. \n #self.send_header(\"Content-Type\", rtype) \n \n self.end_headers()\n if not srange==None:\n srange=srange/inflate\n \n if sendData:\n downloader.keep_sending_video(self.wfile,srange,framgementToSend)\n #runningthread=thread.start_new_thread(downloader.download,(self.wfile,url,proxy,use_proxy_for_chunks,))\n print 'srange,framgementToSend',srange,framgementToSend\n #runningthread=thread.start_new_thread(downloader.keep_sending_video,(self.wfile,srange,framgementToSend,))\n \n xbmc.sleep(500)\n while not downloader.status==\"finished\":\n xbmc.sleep(200);\n\n\n except:\n #Print out a stack trace\n traceback.print_exc()\n g_stopEvent.set()\n self.send_response(404)\n #Close output stream file\n self.wfile.close()\n return\n\n #Close output stream file\n self.wfile.close()\n return ", "metadata": "root.MyHandler.answer_request", "header": "['class', 'MyHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']", "index": 69 }, { "content": " def get_range_request(self, hrange, file_size):\n if hrange==None:\n srange=0\n erange=None\n else:\n try:\n #Get the byte value from the request string.\n hrange=str(hrange)\n splitRange=hrange.split(\"=\")[1].split(\"-\")\n srange=int(splitRange[0])\n erange = splitRange[1]\n if erange==\"\":\n erange=int(file_size)-1\n #Build range string\n \n except:\n # Failure to build range string? Create a 0- range.\n srange=0\n erange=int(file_size-1);\n return (srange, erange)", "metadata": "root.MyHandler.get_range_request", "header": "['class', 'MyHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']", "index": 224 }, { "content": " def decode_url(self, url):\n print 'in params'\n params=urlparse.parse_qs(url)\n print 'params',params # TODO read all params\n #({'url': url, 'downloadmode': downloadmode, 'keep_file':keep_file,'connections':connections})\n received_url = params['url'][0]#\n use_proxy_for_chunks =False\n proxy=None\n try:\n proxy = params['proxy'][0]#\n use_proxy_for_chunks = params['use_proxy_for_chunks'][0]#\n except: pass\n \n maxbitrate=0\n try:\n maxbitrate = int(params['maxbitrate'][0])\n except: pass\n auth=None\n try:\n auth = params['auth'][0]\n except: pass\n\n if auth=='None' and auth=='':\n auth=None\n\n if proxy=='None' or proxy=='':\n proxy=None\n if use_proxy_for_chunks=='False':\n use_proxy_for_chunks=False\n simpledownloader=False\n try:\n simpledownloader = params['simpledownloader'][0]#\n if simpledownloader.lower()=='true':\n print 'params[simpledownloader][0]',params['simpledownloader'][0]\n simpledownloader=True\n else:\n simpledownloader=False\n except: pass\n streamtype='HDS'\n try:\n streamtype = params['streamtype'][0]# \n except: pass \n if streamtype=='None' and streamtype=='': streamtype='HDS'\n return (received_url,proxy,use_proxy_for_chunks,maxbitrate,simpledownloader,auth,streamtype) ", "metadata": "root.MyHandler.decode_url", "header": "['class', 'MyHandler', '(', 'BaseHTTPRequestHandler', ')', ':', '___EOS___']", "index": 245 } ]

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[ { "content": "# -*- python -*-\n#\n# Copyright 2006-2009 - 2008 INRIA - CIRAD - INRA \n#\n# File author(s): Samuel Dufour-Kowalski <samuel.dufour@sophia.inria.fr>\n# Christophe Pradal <christophe.prada@cirad.fr>\n#\n# Distributed under the CeCILL v2 License.\n# See accompanying LICENSE section at the end of this file or \n# http://www.cecill.info/licences/Licence_CeCILL_V2-en.html\n# \n################################################################################\n\"\"\"This module implements a QT4 python interpreter widget.\"\"\"\n\n__license__ = \"CeCILL V2\"\n\n\nimport sys\nfrom PyQt4 import QtCore, QtGui\nfrom PyQt4.QtCore import Qt\n\nfrom PyQt4.Qsci import QsciScintilla, QsciLexerPython\nfrom PyQt4.QtGui import QApplication\nfrom PyQt4.QtCore import QThread, QEvent\n\nRedirectionEventId = QEvent.User+100\nsys_stderr = None\nsys_stdout = None\nsys_stdin = None\n\ntry:\n import openalea.lpy.gui.py2exe_release\n py2exe_release = True\nexcept:\n py2exe_release = False\n \n#*******************************************************************************\n# M u l t i p l e R e d i r e c t i o n *\n#*******************************************************************************\n\n\n\n#*******************************************************************************\n# T h r e a d e d R e d i r e c t i o n *\n#*******************************************************************************\n\n\n \n#*******************************************************************************\n# G r a p h i c a l S t r e a m R e d i r e c t i o n *\n#*******************************************************************************\n\n \n\n#*******************************************************************************\n# S c i S h e l l *\n#*******************************************************************************\n\n\n\n\n#*******************************************************************************\n# i f _ _ n a m e _ _ = = \" _ _ m a i n _ _ \" *\n#*******************************************************************************\n\nif __name__==\"__main__\":\n main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": " def __showDynCompletion(self):\n \"\"\"\n Display a completion list based on the last token\n \"\"\"\n\n text = self.__get_current_line()\n \n try:\n locals = self.interpreter.locals\n obj = eval(text, globals(), self.interpreter.locals)\n l = dir(obj)\n #l = filter(lambda x : not x.startswith('__'), l)\n self.__showCompletions(l, text) \n except : pass", "metadata": "root.SciShell.__showDynCompletion", "header": "['class', 'SciShell', '(', 'QsciScintilla', ',', 'GraphicalStreamRedirection', ')', ':', '___EOS___']", "index": 739 } ]

[ { "span": "except:", "start_line": 33, "start_column": 0, "end_line": 33, "end_column": 7 }, { "span": "except : ", "start_line": 752, "start_column": 8, "end_line": 752, "end_column": 16 } ]

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[ { "content": " def test_search_with_wrong_field_value_returns_400_error_and_a_message(self):\n fake_request = self.mox.CreateMockAnything()\n fake_request.GET = {'field': 'tenant', 'value': 'tenant'}\n models.RawData.objects.filter(tenant='tenant').AndRaise(FieldError)\n self.mox.ReplayAll()\n\n resp = stacky_server.search(fake_request)\n\n self.assertEqual(resp.status_code, 400)\n json_resp = json.loads(resp.content)\n self.assertEquals(json_resp[0],[u'Error', u'Message'])\n self.assertEquals(json_resp[1],\n [u'Bad Request', u\"The requested field\"\n u\" 'tenant' does not exist for the corresponding object.\\nNote: \"\n u\"The field names of database are case-sensitive.\"])\n\n self.mox.VerifyAll()", "metadata": "root.StackyServerTestCase.test_search_with_wrong_field_value_returns_400_error_and_a_message", "header": "['class', 'StackyServerTestCase', '(', 'StacktachBaseTestCase', ')', ':', '___EOS___']", "index": 1179 }, { "content": " def test_jsonreports_search_with_invalid_fields(self):\n request = self.mox.CreateMockAnything()\n request.GET = {'invalid_column_1': 'value_1',\n 'invalid_column_2': 'value_2',\n 'version': 4,\n 'json': 'json',\n 'period_start': '2014-01-01 00:00:00'}\n self.mox.ReplayAll()\n\n actual_result = stacky_server.do_jsonreports_search(request).content\n expected_result = [\n [\"Error\", \"Message\"],\n [\"Bad Request\", \"The requested fields either do not exist for the \"\n \"corresponding object or are not searchable: invalid_column_1, \"\n \"invalid_column_2, json, version. Note: The field names of \"\n \"database are case-sensitive.\"]\n ]\n self.assertEqual(ast.literal_eval(actual_result), expected_result)\n self.mox.VerifyAll()", "metadata": "root.JsonReportsSearchAPI.test_jsonreports_search_with_invalid_fields", "header": "['class', 'JsonReportsSearchAPI', '(', 'StacktachBaseTestCase', ')', ':', '___EOS___']", "index": 1360 }, { "content": " def test_jsonreports_search_with_invalid_period_start(self):\n request = self.mox.CreateMockAnything()\n request.GET = {'period_start': '1234'}\n self.mox.ReplayAll()\n\n actual_result = stacky_server.do_jsonreports_search(request).content\n expected_result = [\n [\"Error\", \"Message\"],\n [\"Bad Request\", \"'1234' value has an invalid format. It must be in \"\n \"YYYY-MM-DD HH:MM[:ss[.uuuuuu]][TZ] format.\"]\n ]\n self.assertEqual(ast.literal_eval(actual_result), expected_result)\n self.mox.VerifyAll()", "metadata": "root.JsonReportsSearchAPI.test_jsonreports_search_with_invalid_period_start", "header": "['class', 'JsonReportsSearchAPI', '(', 'StacktachBaseTestCase', ')', ':', '___EOS___']", "index": 1380 }, { "content": " def test_jsonreports_search_with_invalid_period_end(self):\n request = self.mox.CreateMockAnything()\n request.GET = {'period_end': '1234'}\n self.mox.ReplayAll()\n\n actual_result = stacky_server.do_jsonreports_search(request).content\n expected_result = [\n [\"Error\", \"Message\"],\n [\"Bad Request\", \"'1234' value has an invalid format. It must be in \"\n \"YYYY-MM-DD HH:MM[:ss[.uuuuuu]][TZ] format.\"]\n ]\n self.assertEqual(ast.literal_eval(actual_result), expected_result)\n self.mox.VerifyAll()", "metadata": "root.JsonReportsSearchAPI.test_jsonreports_search_with_invalid_period_end", "header": "['class', 'JsonReportsSearchAPI', '(', 'StacktachBaseTestCase', ')', ':', '___EOS___']", "index": 1394 }, { "content": " def test_jsonreports_search_with_invalid_id(self):\n request = self.mox.CreateMockAnything()\n request.GET = {'id': 'abcd'}\n self.mox.ReplayAll()\n\n actual_result = stacky_server.do_jsonreports_search(request).content\n expected_result = [\n [\"Error\", \"Message\"],\n [\"Bad Request\", \"'abcd' value has an invalid format. It must be in \"\n \"integer format.\"]\n ]\n self.assertEqual(ast.literal_eval(actual_result), expected_result)\n self.mox.VerifyAll()", "metadata": "root.JsonReportsSearchAPI.test_jsonreports_search_with_invalid_id", "header": "['class', 'JsonReportsSearchAPI', '(', 'StacktachBaseTestCase', ')', ':', '___EOS___']", "index": 1408 }, { "content": " def test_jsonreports_search_with_invalid_created_format(self):\n request = self.mox.CreateMockAnything()\n request.GET = {\n 'created': '2014-01-01 00:00:00'\n }\n self.mox.ReplayAll()\n\n actual_result = stacky_server.do_jsonreports_search(request).content\n expected_result = [\n [\"Error\", \"Message\"],\n [\"Bad Request\", \"'2014-01-01 00:00:00' value has an invalid format.\"\n \" It must be in YYYY-MM-DD format.\"]\n ]\n\n self.assertEqual(ast.literal_eval(actual_result), expected_result)\n self.mox.VerifyAll()", "metadata": "root.JsonReportsSearchAPI.test_jsonreports_search_with_invalid_created_format", "header": "['class', 'JsonReportsSearchAPI', '(', 'StacktachBaseTestCase', ')', ':', '___EOS___']", "index": 1422 }, { "content": " def test_jsonreports_search_by_invalid_created_400(self):\n request = self.mox.CreateMockAnything()\n request.GET = {\n 'created': '1234'}\n self.mox.ReplayAll()\n\n actual_result = stacky_server.do_jsonreports_search(request).content\n expected_result = \\\n [\n [\"Error\", \"Message\"],\n [\"Bad Request\", \"'1234' value has an invalid format. It must be in \"\n \"YYYY-MM-DD format.\"]\n ]\n self.assertEquals(ast.literal_eval(actual_result), expected_result)\n self.mox.VerifyAll()", "metadata": "root.JsonReportsSearchAPI.test_jsonreports_search_by_invalid_created_400", "header": "['class', 'JsonReportsSearchAPI', '(', 'StacktachBaseTestCase', ')', ':', '___EOS___']", "index": 1439 } ]

[ { "span": "u\"The requested field\"\n u\" 'tenant' does not exist for the corresponding object.\\nNote: \"\n u\"The field names of database are case-sensitive.\"]", "start_line": 1191, "start_column": 43, "end_line": 1193, "end_column": 58 }, { "span": "\"The requested fields either do not exist for the \"\n \"corresponding object or are not searchable: invalid_column_1, \"\n \"invalid_column_2, json, version. Note: The field names of \"\n \"database are case-sensitive.\"]", "start_line": 1372, "start_column": 28, "end_line": 1375, "end_column": 43 }, { "span": "\"'1234' value has an invalid format. It must be in \"\n \"YYYY-MM-DD HH:MM[:ss[.uuuuuu]][TZ] format.\"]", "start_line": 1388, "start_column": 28, "end_line": 1389, "end_column": 57 }, { "span": "\"'1234' value has an invalid format. It must be in \"\n \"YYYY-MM-DD HH:MM[:ss[.uuuuuu]][TZ] format.\"]", "start_line": 1402, "start_column": 28, "end_line": 1403, "end_column": 57 }, { "span": "\"'abcd' value has an invalid format. It must be in \"\n \"integer format.\"]", "start_line": 1416, "start_column": 28, "end_line": 1417, "end_column": 30 }, { "span": "\"'2014-01-01 00:00:00' value has an invalid format.\"\n \" It must be in YYYY-MM-DD format.\"]", "start_line": 1432, "start_column": 28, "end_line": 1433, "end_column": 48 }, { "span": "\"'1234' value has an invalid format. It must be in \"\n \"YYYY-MM-DD format.\"]", "start_line": 1449, "start_column": 28, "end_line": 1450, "end_column": 33 } ]

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[ { "content": "def refitValveAffordance(aff, point1, origin, normal):\n\n xaxis = aff.params['xaxis']\n yaxis = aff.params['yaxis']\n zaxis = aff.params['zaxis']\n origin = aff.params['origin']\n\n zaxis = normal\n xaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n aff.actor.GetUserTransform().SetMatrix(t.GetMatrix())\n aff.updateParamsFromActorTransform()", "metadata": "root.refitValveAffordance", "header": "['module', '___EOS___']", "index": 1023 }, { "content": "def segmentValveByRim(polyData, rimPoint1, rimPoint2):\n\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n\n yaxis = np.array(rimPoint2) - np.array(rimPoint1)\n zaxis = [0,0,1]\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n\n # flip xaxis to be with view direction\n if np.dot(xaxis, viewDirection) < 0:\n xaxis = -xaxis\n\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n\n origin = (np.array(rimPoint2) + np.array(rimPoint1)) / 2.0\n\n polyData = labelPointDistanceAlongAxis(polyData, xaxis, origin)\n polyData = thresholdPoints(polyData, 'distance_along_axis', [-0.05, 0.05])\n updatePolyData(polyData, 'valve plane region', parent=getDebugFolder(), colorByName='distance_along_axis', visible=False)\n\n\n polyData = cropToSphere(polyData, origin, radius=0.4)\n polyData = applyVoxelGrid(polyData, leafSize=0.015)\n\n updatePolyData(polyData, 'valve search region', parent=getDebugFolder(), color=[1,0,0], visible=False)\n\n\n valveFit = extractLargestCluster(polyData, minClusterSize=1)\n updatePolyData(valveFit, 'valve cluster', parent=getDebugFolder(), color=[0,1,0], visible=False)\n\n points = vtkNumpy.getNumpyFromVtk(valveFit, 'Points')\n zvalues = points[:,2].copy()\n minZ = np.min(zvalues)\n maxZ = np.max(zvalues)\n\n tubeRadius = 0.017\n radius = float((maxZ - minZ) / 2.0) - tubeRadius\n\n fields = makePolyDataFields(valveFit)\n origin = np.array(fields.frame.GetPosition())\n vis.updatePolyData(transformPolyData(fields.box, fields.frame), 'valve cluster bounding box', visible=False)\n\n #origin = computeCentroid(valveFit)\n\n '''\n zaxis = [0,0,1]\n xaxis = normal\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n '''\n\n radius = np.max(fields.dims)/2.0 - tubeRadius\n\n\n proj = [np.abs(np.dot(xaxis, axis)) for axis in fields.axes]\n xaxisNew = fields.axes[np.argmax(proj)]\n if np.dot(xaxisNew, xaxis) < 0:\n xaxisNew = -xaxisNew\n\n xaxis = xaxisNew\n\n yaxis = np.cross(zaxis, xaxis)\n yaxis /= np.linalg.norm(yaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n\n\n t = getTransformFromAxes(xaxis, yaxis, zaxis)\n t.PostMultiply()\n t.Translate(origin)\n\n pose = transformUtils.poseFromTransform(t)\n desc = dict(classname='CapsuleRingAffordanceItem', Name='valve', uuid=newUUID(), pose=pose, Color=[0,1,0], Radius=float(radius), Segments=20)\n desc['Tube Radius'] = tubeRadius\n\n obj = affordanceManager.newAffordanceFromDescription(desc)\n obj.params = dict(radius=radius)\n\n return obj", "metadata": "root.segmentValveByRim", "header": "['module', '___EOS___']", "index": 1196 }, { "content": "def segmentValveByWallPlane(expectedValveRadius, point1, point2):\n\n\n centerPoint = (point1 + point2) / 2.0\n\n inputObj = om.findObjectByName('pointcloud snapshot')\n polyData = inputObj.polyData\n\n _ , polyData = removeGround(polyData)\n\n viewDirection = SegmentationContext.getGlobalInstance().getViewDirection()\n polyData, origin, normal = applyPlaneFit(polyData, expectedNormal=-viewDirection, returnOrigin=True)\n\n\n perpLine = np.cross(point2 - point1, normal)\n #perpLine /= np.linalg.norm(perpLine)\n #perpLine * np.linalg.norm(point2 - point1)/2.0\n point3, point4 = centerPoint + perpLine/2.0, centerPoint - perpLine/2.0\n\n d = DebugData()\n d.addLine(point1, point2)\n d.addLine(point3, point4)\n updatePolyData(d.getPolyData(), 'crop lines', parent=getDebugFolder(), visible=False)\n\n wallPoints = thresholdPoints(polyData, 'dist_to_plane', [-0.01, 0.01])\n updatePolyData(wallPoints, 'valve wall', parent=getDebugFolder(), visible=False)\n\n searchRegion = thresholdPoints(polyData, 'dist_to_plane', [0.05, 0.5])\n searchRegion = cropToLineSegment(searchRegion, point1, point2)\n searchRegion = cropToLineSegment(searchRegion, point3, point4)\n\n updatePolyData(searchRegion, 'valve search region', parent=getDebugFolder(), color=[1,0,0], visible=False)\n\n searchRegionSpokes = shallowCopy(searchRegion)\n\n searchRegion, origin, _ = applyPlaneFit(searchRegion, expectedNormal=normal, perpendicularAxis=normal, returnOrigin=True)\n searchRegion = thresholdPoints(searchRegion, 'dist_to_plane', [-0.015, 0.015])\n\n updatePolyData(searchRegion, 'valve search region 2', parent=getDebugFolder(), color=[0,1,0], visible=False)\n\n\n largestCluster = extractLargestCluster(searchRegion, minClusterSize=1)\n\n updatePolyData(largestCluster, 'valve cluster', parent=getDebugFolder(), color=[0,1,0], visible=False)\n\n\n radiusLimit = [expectedValveRadius - 0.01, expectedValveRadius + 0.01] if expectedValveRadius else None\n #radiusLimit = None\n\n polyData, circleFit = extractCircle(largestCluster, distanceThreshold=0.01, radiusLimit=radiusLimit)\n updatePolyData(polyData, 'circle fit', parent=getDebugFolder(), visible=False)\n\n\n #polyData, circleFit = extractCircle(polyData, distanceThreshold=0.01)\n #showPolyData(polyData, 'circle fit', colorByName='z')\n\n\n radius = circleFit.GetCircleRadius()\n origin = np.array(circleFit.GetCircleOrigin())\n circleNormal = np.array(circleFit.GetCircleNormal())\n circleNormal = circleNormal/np.linalg.norm(circleNormal)\n\n if np.dot(circleNormal, normal) < 0:\n circleNormal *= -1\n\n # force use of the plane normal\n circleNormal = normal\n radius = expectedValveRadius\n\n d = DebugData()\n d.addLine(origin - normal*radius, origin + normal*radius)\n d.addCircle(origin, circleNormal, radius)\n updatePolyData(d.getPolyData(), 'valve axes', parent=getDebugFolder(), visible=False)\n\n\n zaxis = -circleNormal\n xaxis = [0, 0, 1]\n yaxis = np.cross(zaxis, xaxis)\n xaxis = np.cross(yaxis, zaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n #t = getTransformFromAxes(xaxis, yaxis, zaxis) # this was added to be consistent with segmentValveByRim\n t = getTransformFromAxes(zaxis, -yaxis, xaxis) # this was added to be consistent with segmentValveByRim\n t.PostMultiply()\n t.Translate(origin)\n\n\n # Spoke angle fitting:\n if (1==0): # disabled jan 2015\n # extract the relative positon of the points to the valve axis:\n searchRegionSpokes = labelDistanceToLine(searchRegionSpokes, origin, [origin + circleNormal])\n searchRegionSpokes = thresholdPoints(searchRegionSpokes, 'distance_to_line', [0.05, radius-0.04])\n updatePolyData(searchRegionSpokes, 'valve spoke search', parent=getDebugFolder(), visible=False)\n searchRegionSpokesLocal = transformPolyData(searchRegionSpokes, t.GetLinearInverse() )\n points = vtkNumpy.getNumpyFromVtk(searchRegionSpokesLocal , 'Points')\n\n spoke_angle = findValveSpokeAngle(points)\n else:\n spoke_angle = 0\n\n spokeAngleTransform = transformUtils.frameFromPositionAndRPY([0,0,0], [0,0,spoke_angle])\n spokeTransform = transformUtils.copyFrame(t)\n spokeAngleTransform.Concatenate(spokeTransform)\n spokeObj = showFrame(spokeAngleTransform, 'spoke frame', parent=getDebugFolder(), visible=False, scale=radius)\n spokeObj.addToView(app.getDRCView())\n t = spokeAngleTransform\n\n tubeRadius = 0.017\n\n pose = transformUtils.poseFromTransform(t)\n desc = dict(classname='CapsuleRingAffordanceItem', Name='valve', uuid=newUUID(), pose=pose, Color=[0,1,0], Radius=float(radius), Segments=20)\n desc['Tube Radius'] = tubeRadius\n\n obj = affordanceManager.newAffordanceFromDescription(desc)\n obj.params = dict(radius=radius)", "metadata": "root.segmentValveByWallPlane", "header": "['module', '___EOS___']", "index": 1281 }, { "content": "def sortFittedDrills(fitResults, robotOrigin, robotForward):\n\n angleToFitResults = []\n\n for fitResult in fitResults:\n cluster, drillFrame = fitResult\n drillOrigin = np.array(drillFrame.GetPosition())\n angleToDrill = np.abs(computeSignedAngleBetweenVectors(robotForward, drillOrigin - robotOrigin, [0,0,1]))\n angleToFitResults.append((angleToDrill, cluster, drillFrame))\n #print 'angle to candidate drill:', angleToDrill\n\n angleToFitResults.sort(key=lambda x: x[0])\n\n #print 'using drill at angle:', angleToFitResults[0][0]\n\n drillMesh = getDrillBarrelMesh()\n\n for i, fitResult in enumerate(angleToFitResults):\n\n angleToDrill, cluster, drillFrame = fitResult\n\n if i == 0:\n\n drill = om.findObjectByName('drill')\n drill = updatePolyData(drillMesh, 'drill', color=[0, 1, 0], cls=FrameAffordanceItem, visible=True)\n drillFrame = updateFrame(drillFrame, 'drill frame', parent=drill, visible=False)\n drill.actor.SetUserTransform(drillFrame.transform)\n\n drill.setAffordanceParams(dict(otdf_type='dewalt_button', friendly_name='dewalt_button'))\n drill.updateParamsFromActorTransform()\n\n drill.setSolidColor([0, 1, 0])\n #cluster.setProperty('Visible', True)\n\n else:\n\n drill = showPolyData(drillMesh, 'drill candidate', color=[1,0,0], visible=False, parent=getDebugFolder())\n drill.actor.SetUserTransform(drillFrame)\n om.addToObjectModel(drill, parentObj=getDebugFolder())", "metadata": "root.sortFittedDrills", "header": "['module', '___EOS___']", "index": 2913 }, { "content": "def segmentBlockByTopPlane(polyData, blockDimensions, expectedNormal, expectedXAxis, edgeSign=1, name='block affordance'):\n\n polyData, planeOrigin, normal = applyPlaneFit(polyData, distanceThreshold=0.05, expectedNormal=expectedNormal, returnOrigin=True)\n\n _, lineDirection, _ = applyLineFit(polyData)\n\n zaxis = lineDirection\n yaxis = normal\n xaxis = np.cross(yaxis, zaxis)\n\n if np.dot(xaxis, expectedXAxis) < 0:\n xaxis *= -1\n\n # make right handed\n zaxis = np.cross(xaxis, yaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis /= np.linalg.norm(zaxis)\n\n expectedXAxis = np.array(xaxis)\n\n edgePoints = computeEdge(polyData, zaxis, xaxis*edgeSign)\n edgePoints = vtkNumpy.getVtkPolyDataFromNumpyPoints(edgePoints)\n\n d = DebugData()\n obj = updatePolyData(edgePoints, 'edge points', parent=getDebugFolder(), visible=False)\n\n linePoint, lineDirection, _ = applyLineFit(edgePoints)\n zaxis = lineDirection\n xaxis = np.cross(yaxis, zaxis)\n\n\n if np.dot(xaxis, expectedXAxis) < 0:\n xaxis *= -1\n\n # make right handed\n zaxis = np.cross(xaxis, yaxis)\n xaxis /= np.linalg.norm(xaxis)\n yaxis /= np.linalg.norm(yaxis)\n zaxis /= np.linalg.norm(zaxis)\n\n polyData = labelPointDistanceAlongAxis(polyData, xaxis, resultArrayName='dist_along_line')\n pts = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n\n dists = np.dot(pts-linePoint, zaxis)\n\n p1 = linePoint + zaxis*np.min(dists)\n p2 = linePoint + zaxis*np.max(dists)\n\n p1 = projectPointToPlane(p1, planeOrigin, normal)\n p2 = projectPointToPlane(p2, planeOrigin, normal)\n\n xwidth, ywidth = blockDimensions\n zwidth = np.linalg.norm(p2 - p1)\n\n origin = p1 - edgeSign*xaxis*xwidth/2.0 - yaxis*ywidth/2.0 + zaxis*zwidth/2.0\n\n d = DebugData()\n\n #d.addSphere(linePoint, radius=0.02)\n #d.addLine(linePoint, linePoint + yaxis*ywidth)\n #d.addLine(linePoint, linePoint + xaxis*xwidth)\n #d.addLine(linePoint, linePoint + zaxis*zwidth)\n\n\n d.addSphere(p1, radius=0.01)\n d.addSphere(p2, radius=0.01)\n d.addLine(p1, p2)\n\n d.addSphere(origin, radius=0.01)\n #d.addLine(origin - xaxis*xwidth/2.0, origin + xaxis*xwidth/2.0)\n #d.addLine(origin - yaxis*ywidth/2.0, origin + yaxis*ywidth/2.0)\n #d.addLine(origin - zaxis*zwidth/2.0, origin + zaxis*zwidth/2.0)\n\n d.addLine(origin, origin + xaxis*xwidth/2.0)\n d.addLine(origin, origin + yaxis*ywidth/2.0)\n d.addLine(origin, origin + zaxis*zwidth/2.0)\n\n\n #obj = updatePolyData(d.getPolyData(), 'block axes')\n #obj.setProperty('Color', QtGui.QColor(255, 255, 0))\n #obj.setProperty('Visible', False)\n\n obj = createBlockAffordance(origin, xaxis, yaxis, zaxis, xwidth, ywidth, zwidth, name)\n obj.setProperty('Color', [222/255.0, 184/255.0, 135/255.0])\n\n computeDebrisGraspSeed(obj)\n t = computeDebrisStanceFrame(obj)\n if t:\n showFrame(t, 'debris stance frame', parent=obj)\n obj.publishCallback = functools.partial(publishDebrisStanceFrame, obj)\n\n return obj", "metadata": "root.segmentBlockByTopPlane", "header": "['module', '___EOS___']", "index": 3736 }, { "content": "def findFarRightCorner(polyData, linkFrame):\n '''\n Within a point cloud find the point to the far right from the link\n The input is the 4 corners of a minimum bounding box\n '''\n\n diagonalTransform = transformUtils.copyFrame(linkFrame)\n diagonalTransform.PreMultiply()\n diagonalTransform.Concatenate( transformUtils.frameFromPositionAndRPY([0,0,0], [0,0,45]) )\n vis.updateFrame(diagonalTransform, 'diagonal frame', parent=getDebugFolder(), visible=False)\n\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n viewOrigin = diagonalTransform.TransformPoint([0.0, 0.0, 0.0])\n viewX = diagonalTransform.TransformVector([1.0, 0.0, 0.0])\n viewY = diagonalTransform.TransformVector([0.0, 1.0, 0.0])\n viewZ = diagonalTransform.TransformVector([0.0, 0.0, 1.0])\n polyData = labelPointDistanceAlongAxis(polyData, viewY, origin=viewOrigin, resultArrayName='distance_along_foot_y')\n\n vis.updatePolyData( polyData, 'cornerPoints', parent='segmentation', visible=False)\n farRightIndex = vtkNumpy.getNumpyFromVtk(polyData, 'distance_along_foot_y').argmin()\n points = vtkNumpy.getNumpyFromVtk(polyData, 'Points')\n return points[farRightIndex,:]", "metadata": "root.findFarRightCorner", "header": "['module', '___EOS___']", "index": 4736 } ]

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[ { "span": "zaxis ", "start_line": 1030, "start_column": 4, "end_line": 1030, "end_column": 9 }, { "span": "xaxis ", "start_line": 1031, "start_column": 4, "end_line": 1031, "end_column": 9 }, { "span": "yaxis ", "start_line": 1032, "start_column": 4, "end_line": 1032, "end_column": 9 }, { "span": "radius ", "start_line": 1251, "start_column": 4, "end_line": 1251, "end_column": 10 }, { "span": "radius ", "start_line": 1348, "start_column": 4, "end_line": 1348, "end_column": 10 }, { "span": "drill ", "start_line": 2937, "start_column": 12, "end_line": 2937, "end_column": 17 }, { "span": "obj ", "start_line": 3819, "start_column": 4, "end_line": 3819, "end_column": 7 }, { "span": "points ", "start_line": 4756, "start_column": 4, "end_line": 4756, "end_column": 10 } ]

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[ { "content": " def test_jwe_compression(self):\n local_claims = copy(claims)\n\n for v in xrange(1000):\n local_claims['dummy_' + str(v)] = '0' * 100\n\n jwe = jose.serialize_compact(jose.encrypt(local_claims, rsa_pub_key))\n _, _, _, uncompressed_ciphertext, _ = jwe.split('.')\n\n jwe = jose.serialize_compact(jose.encrypt(local_claims, rsa_pub_key,\n compression='DEF'))\n _, _, _, compressed_ciphertext, _ = jwe.split('.')\n\n self.assertTrue(len(compressed_ciphertext) <\n len(uncompressed_ciphertext))\n\n jwt = jose.legacy_decrypt(jose.deserialize_compact(jwe), rsa_priv_key)\n self.assertEqual(jwt.claims, local_claims)", "metadata": "root.TestJWE.test_jwe_compression", "header": "['class', 'TestJWE', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 276 }, { "content": " def test_jwe_compression(self):\n local_claims = copy(claims)\n\n for v in xrange(1000):\n local_claims['dummy_' + str(v)] = '0' * 100\n\n jwe = jose.serialize_compact(\n jose.spec_compliant_encrypt(local_claims, rsa_pub_key)\n )\n _, _, _, uncompressed_ciphertext, _ = jwe.split('.')\n\n jwe = jose.serialize_compact(\n jose.spec_compliant_encrypt(local_claims, rsa_pub_key,\n add_header={'zip': 'DEF'})\n )\n _, _, _, compressed_ciphertext, _ = jwe.split('.')\n\n self.assertTrue(len(compressed_ciphertext) <\n len(uncompressed_ciphertext))\n\n jwt = jose.spec_compliant_decrypt(jose.deserialize_compact(jwe),\n rsa_priv_key)\n self.assertEqual(jwt.claims, local_claims)", "metadata": "root.TestSpecCompliantJWE.test_jwe_compression", "header": "['class', 'TestSpecCompliantJWE', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 456 } ]

[ { "span": "self.assertTrue(len(compressed_ciphertext) <\n len(uncompressed_ciphertext))", "start_line": 289, "start_column": 8, "end_line": 290, "end_column": 45 }, { "span": "self.assertTrue(len(compressed_ciphertext) <\n len(uncompressed_ciphertext))", "start_line": 473, "start_column": 8, "end_line": 474, "end_column": 45 } ]

[]

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[ { "content": " def act(self):\n key = self.name\n if not key:\n self.warning(logger, 'no valid tracking name set')\n return\n try:\n value = float(self.get('value'))\n except:\n self.warning(logger, 'no valid value set')\n return\n try:\n t = float(self.get('time'))\n except:\n self.warning(logger, 'no valid time set')\n return\n user = self.get('user')\n if key not in monitor.trackers:\n monitor.trackers[key] = Tracker()\n tracker = monitor.trackers[key]\n tracker.add(t, value, user)", "metadata": "root.Track.act", "header": "['class', 'Track', '(', 'Task', ')', ':', '___EOS___']", "index": 116 }, { "content": " def act(self):\n key = self.name\n if not key:\n self.warning(logger, 'no valid tracking name set')\n return\n annotator = self.get('annotator')\n try:\n t = float(self.get('time'))\n except:\n self.warning(logger, 'no valid time set')\n return\n if annotator and key in monitor.trackers:\n tracker = monitor.trackers[key]\n tracker.annotate(t, annotator)", "metadata": "root.AnnotateTracker.act", "header": "['class', 'AnnotateTracker', '(', 'Task', ')', ':', '___EOS___']", "index": 161 }, { "content": " def act(self):\n key = self.name\n if not key:\n self.warning(logger, 'no valid aggregator name set')\n return\n try:\n value = float(self.get('value'))\n except:\n self.warning(logger, 'no valid value set')\n return\n user = self.get('user')\n if key not in monitor.aggregators:\n monitor.aggregators[key] = Aggregator()\n aggregator = monitor.aggregators[key]\n aggregator.add(value, user)", "metadata": "root.Aggregate.act", "header": "['class', 'Aggregate', '(', 'Task', ')', ':', '___EOS___']", "index": 208 }, { "content": " def set_resolution(self, resolution):\n try:\n self.resolution = float(resolution)\n self.invalid = True\n except:\n logger.warning('resolution can not be converted to a float {}'.format(resolution))", "metadata": "root.Measurer.set_resolution", "header": "['class', 'Measurer', '(', 'object', ')', ':', '___EOS___']", "index": 372 }, { "content": " def act(self):\n logger.info('measure {}'.format(self.decodedMessage))\n key = self.name\n if not key:\n self.warning(logger, 'no valid measurer name set')\n return\n try:\n value = float(self.get('value'))\n except:\n self.warning(logger, 'no valid value set')\n return\n try:\n pos = int(self.get('label'))\n except:\n self.warning(logger, 'no valid label')\n return\n user = self.get('user')\n if key not in monitor.measurers:\n monitor.measurers[key] = Measurer()\n measurer = monitor.measurers[key]\n measurer.add(value, user, pos)", "metadata": "root.Measure.act", "header": "['class', 'Measure', '(', 'Task', ')', ':', '___EOS___']", "index": 390 } ]

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[ { "content": " def test_collectionannot(self):\n 'Test building an AnnotationDB from file'\n from pygr import seqdb, cnestedlist, sqlgraph\n dm2 = pygr.Data.getResource('TEST.Seq.Genome.dm2')\n # BUILD ANNOTATION DATABASE FOR REFSEQ EXONS\n exon_slices = Collection(\n filename=os.path.join(self.path, 'refGene_exonAnnot_dm2.cdb'),\n intKeys=True, mode='cr', writeback=False)\n exon_db = seqdb.AnnotationDB(exon_slices, dm2,\n sliceAttrDict=dict(id=0, exon_id=1,\n orientation=2,\n gene_id=3, start=4,\n stop=5))\n msa = cnestedlist.NLMSA(os.path.join(self.path,\n 'refGene_exonAnnot_dm2'), 'w',\n pairwiseMode=True, bidirectional=False)\n for lines in open(os.path.join(testInputDir,\n 'refGene_exonAnnot%s_dm2.txt'\n % smallSamplePostfix),\n 'r').xreadlines():\n row = [x for x in lines.split('\\t')] # CONVERT TO LIST SO MUTABLE\n row[1] = int(row[1]) # CONVERT FROM STRING TO INTEGER\n exon_slices[row[1]] = row\n exon = exon_db[row[1]] # GET THE ANNOTATION OBJECT FOR THIS EXON\n msa.addAnnotation(exon) # SAVE IT TO GENOME MAPPING\n exon_db.clear_cache() # not really necessary; cache should autoGC\n # SHELVE SHOULD BE EXPLICITLY CLOSED IN ORDER TO SAVE CURRENT CONTENTS\n exon_slices.close()\n msa.build() # FINALIZE GENOME ALIGNMENT INDEXES\n exon_db.__doc__ = 'Exon Annotation Database for dm2'\n pygr.Data.addResource('TEST.Annotation.dm2.exons', exon_db)\n msa.__doc__ = 'NLMSA Exon for dm2'\n pygr.Data.addResource('TEST.Annotation.NLMSA.dm2.exons', msa)\n exon_schema = pygr.Data.ManyToManyRelation(dm2, exon_db,\n bindAttrs=('exon1', ))\n exon_schema.__doc__ = 'Exon Schema for dm2'\n pygr.Data.addSchema('TEST.Annotation.NLMSA.dm2.exons', exon_schema)\n # BUILD ANNOTATION DATABASE FOR REFSEQ SPLICES\n splice_slices = Collection(\n filename=os.path.join(self.path, 'refGene_spliceAnnot_dm2.cdb'),\n intKeys=True, mode='cr', writeback=False)\n splice_db = seqdb.AnnotationDB(splice_slices, dm2,\n sliceAttrDict=dict(id=0, splice_id=1,\n orientation=2,\n gene_id=3, start=4,\n stop=5))\n msa = cnestedlist.NLMSA(os.path.join(self.path,\n 'refGene_spliceAnnot_dm2'), 'w',\n pairwiseMode=True, bidirectional=False)\n for lines in open(os.path.join(testInputDir,\n 'refGene_spliceAnnot%s_dm2.txt'\n % smallSamplePostfix),\n 'r').xreadlines():\n row = [x for x in lines.split('\\t')] # CONVERT TO LIST SO MUTABLE\n row[1] = int(row[1]) # CONVERT FROM STRING TO INTEGER\n splice_slices[row[1]] = row\n # GET THE ANNOTATION OBJECT FOR THIS EXON\n splice = splice_db[row[1]]\n msa.addAnnotation(splice) # SAVE IT TO GENOME MAPPING\n splice_db.clear_cache() # not really necessary; cache should autoGC\n # SHELVE SHOULD BE EXPLICITLY CLOSED IN ORDER TO SAVE CURRENT CONTENTS\n splice_slices.close()\n msa.build() # FINALIZE GENOME ALIGNMENT INDEXES\n splice_db.__doc__ = 'Splice Annotation Database for dm2'\n pygr.Data.addResource('TEST.Annotation.dm2.splices', splice_db)\n msa.__doc__ = 'NLMSA Splice for dm2'\n pygr.Data.addResource('TEST.Annotation.NLMSA.dm2.splices', msa)\n splice_schema = pygr.Data.ManyToManyRelation(dm2, splice_db,\n bindAttrs=('splice1', ))\n splice_schema.__doc__ = 'Splice Schema for dm2'\n pygr.Data.addSchema('TEST.Annotation.NLMSA.dm2.splices', splice_schema)\n # BUILD ANNOTATION DATABASE FOR MOST CONSERVED ELEMENTS FROM UCSC\n ucsc_slices = Collection(\n filename=os.path.join(self.path, 'phastConsElements15way_dm2.cdb'),\n intKeys=True, mode='cr', writeback=False)\n ucsc_db = seqdb.AnnotationDB(ucsc_slices, dm2,\n sliceAttrDict=dict(id=0, ucsc_id=1,\n orientation=2,\n gene_id=3, start=4,\n stop=5))\n msa = cnestedlist.NLMSA(os.path.join(self.path,\n 'phastConsElements15way_dm2'),\n 'w', pairwiseMode=True, bidirectional=False)\n for lines in open(os.path.join(testInputDir,\n 'phastConsElements15way%s_dm2.txt'\n % smallSamplePostfix),\n 'r').xreadlines():\n row = [x for x in lines.split('\\t')] # CONVERT TO LIST SO MUTABLE\n row[1] = int(row[1]) # CONVERT FROM STRING TO INTEGER\n ucsc_slices[row[1]] = row\n ucsc = ucsc_db[row[1]] # GET THE ANNOTATION OBJECT FOR THIS EXON\n msa.addAnnotation(ucsc) # SAVE IT TO GENOME MAPPING\n ucsc_db.clear_cache() # not really necessary; cache should autoGC\n # SHELVE SHOULD BE EXPLICITLY CLOSED IN ORDER TO SAVE CURRENT CONTENTS\n ucsc_slices.close()\n msa.build() # FINALIZE GENOME ALIGNMENT INDEXES\n ucsc_db.__doc__ = 'Most Conserved Elements for dm2'\n pygr.Data.addResource('TEST.Annotation.UCSC.dm2.mostconserved',\n ucsc_db)\n msa.__doc__ = 'NLMSA for Most Conserved Elements for dm2'\n pygr.Data.addResource('TEST.Annotation.UCSC.NLMSA.dm2.mostconserved',\n msa)\n ucsc_schema = pygr.Data.ManyToManyRelation(dm2, ucsc_db,\n bindAttrs=('element1', ))\n ucsc_schema.__doc__ = 'Schema for UCSC Most Conserved Elements for dm2'\n pygr.Data.addSchema('TEST.Annotation.UCSC.NLMSA.dm2.mostconserved',\n ucsc_schema)\n pygr.Data.save()\n pygr.Data.clear_cache() # force resources to reload when requested\n\n # QUERY TO EXON AND SPLICES ANNOTATION DATABASE\n dm2 = pygr.Data.getResource('TEST.Seq.Genome.dm2')\n exonmsa = pygr.Data.getResource('TEST.Annotation.NLMSA.dm2.exons')\n splicemsa = pygr.Data.getResource('TEST.Annotation.NLMSA.dm2.splices')\n conservedmsa = \\\n pygr.Data.getResource('TEST.Annotation.UCSC.NLMSA.dm2.mostconserved')\n exons = pygr.Data.getResource('TEST.Annotation.dm2.exons')\n splices = pygr.Data.getResource('TEST.Annotation.dm2.splices')\n mostconserved = \\\n pygr.Data.getResource('TEST.Annotation.UCSC.dm2.mostconserved')\n\n # OPEN DM2_MULTIZ15WAY NLMSA\n msa = cnestedlist.NLMSA(os.path.join(msaDir, 'dm2_multiz15way'), 'r',\n trypath=[seqDir])\n\n exonAnnotFileName = os.path.join(testInputDir,\n 'Annotation_ConservedElement_Exons%s_dm2.txt'\n % smallSamplePostfix)\n intronAnnotFileName = os.path.join(testInputDir,\n 'Annotation_ConservedElement_Introns%s_dm2.txt'\n % smallSamplePostfix)\n newexonAnnotFileName = os.path.join(self.path, 'new_Exons_dm2.txt')\n newintronAnnotFileName = os.path.join(self.path, 'new_Introns_dm2.txt')\n tmpexonAnnotFileName = self.copyFile(exonAnnotFileName)\n tmpintronAnnotFileName = self.copyFile(intronAnnotFileName)\n\n if smallSampleKey:\n chrList = [smallSampleKey]\n else:\n chrList = dm2.seqLenDict.keys()\n chrList.sort()\n\n outfile = open(newexonAnnotFileName, 'w')\n for chrid in chrList:\n slice = dm2[chrid]\n try:\n ex1 = exonmsa[slice]\n except KeyError:\n continue\n else:\n exlist1 = [(ix.exon_id, ix) for ix in ex1.keys()]\n exlist1.sort()\n for ixx, exon in exlist1:\n saveList = []\n tmp = exon.sequence\n tmpexon = exons[exon.exon_id]\n tmpslice = tmpexon.sequence # FOR REAL EXON COORDINATE\n wlist1 = 'EXON', chrid, tmpexon.exon_id, tmpexon.gene_id, \\\n tmpslice.start, tmpslice.stop\n try:\n out1 = conservedmsa[tmp]\n except KeyError:\n pass\n else:\n elementlist = [(ix.ucsc_id, ix) for ix in out1.keys()]\n elementlist.sort()\n for iyy, element in elementlist:\n if element.stop - element.start < 100:\n continue\n score = int(string.split(element.gene_id, '=')[1])\n if score < 100:\n continue\n tmp2 = element.sequence\n tmpelement = mostconserved[element.ucsc_id]\n # FOR REAL ELEMENT COORDINATE\n tmpslice2 = tmpelement.sequence\n wlist2 = wlist1 + (tmpelement.ucsc_id,\n tmpelement.gene_id,\n tmpslice2.start, tmpslice2.stop)\n slicestart, sliceend = max(tmp.start, tmp2.start),\\\n min(tmp.stop, tmp2.stop)\n tmp1 = msa.seqDict['dm2.' + chrid][slicestart:\n sliceend]\n edges = msa[tmp1].edges()\n for src, dest, e in edges:\n if src.stop - src.start < 100:\n continue\n palign, pident = e.pAligned(), e.pIdentity()\n if palign < 0.8 or pident < 0.8:\n continue\n palign, pident = '%.2f' % palign, \\\n '%.2f' % pident\n wlist3 = wlist2 + ((~msa.seqDict)[src],\n str(src), src.start,\n src.stop,\n (~msa.seqDict)[dest],\n str(dest), dest.start,\n dest.stop, palign, pident)\n saveList.append('\\t'.join(map(str, wlist3))\n + '\\n')\n saveList.sort()\n for saveline in saveList:\n outfile.write(saveline)\n outfile.close()\n md5old = hashlib.md5()\n md5old.update(open(tmpexonAnnotFileName, 'r').read())\n md5new = hashlib.md5()\n md5new.update(open(newexonAnnotFileName, 'r').read())\n assert md5old.digest() == md5new.digest()\n\n outfile = open(newintronAnnotFileName, 'w')\n for chrid in chrList:\n slice = dm2[chrid]\n try:\n sp1 = splicemsa[slice]\n except:\n continue\n else:\n splist1 = [(ix.splice_id, ix) for ix in sp1.keys()]\n splist1.sort()\n for ixx, splice in splist1:\n saveList = []\n tmp = splice.sequence\n tmpsplice = splices[splice.splice_id]\n tmpslice = tmpsplice.sequence # FOR REAL EXON COORDINATE\n wlist1 = 'INTRON', chrid, tmpsplice.splice_id, \\\n tmpsplice.gene_id, tmpslice.start, tmpslice.stop\n try:\n out1 = conservedmsa[tmp]\n except KeyError:\n pass\n else:\n elementlist = [(ix.ucsc_id, ix) for ix in out1.keys()]\n elementlist.sort()\n for iyy, element in elementlist:\n if element.stop - element.start < 100:\n continue\n score = int(string.split(element.gene_id, '=')[1])\n if score < 100:\n continue\n tmp2 = element.sequence\n tmpelement = mostconserved[element.ucsc_id]\n # FOR REAL ELEMENT COORDINATE\n tmpslice2 = tmpelement.sequence\n wlist2 = wlist1 + (tmpelement.ucsc_id,\n tmpelement.gene_id,\n tmpslice2.start, tmpslice2.stop)\n slicestart, sliceend = max(tmp.start, tmp2.start),\\\n min(tmp.stop, tmp2.stop)\n tmp1 = msa.seqDict['dm2.' + chrid][slicestart:\n sliceend]\n edges = msa[tmp1].edges()\n for src, dest, e in edges:\n if src.stop - src.start < 100:\n continue\n palign, pident = e.pAligned(), e.pIdentity()\n if palign < 0.8 or pident < 0.8:\n continue\n palign, pident = '%.2f' % palign, \\\n '%.2f' % pident\n wlist3 = wlist2 + ((~msa.seqDict)[src],\n str(src), src.start,\n src.stop,\n (~msa.seqDict)[dest],\n str(dest), dest.start,\n dest.stop, palign, pident)\n saveList.append('\\t'.join(map(str, wlist3))\n + '\\n')\n saveList.sort()\n for saveline in saveList:\n outfile.write(saveline)\n outfile.close()\n md5old = hashlib.md5()\n md5old.update(open(tmpintronAnnotFileName, 'r').read())\n md5new = hashlib.md5()\n md5new.update(open(newintronAnnotFileName, 'r').read())\n assert md5old.digest() == md5new.digest()", "metadata": "root.Build_Test.test_collectionannot", "header": "['class', 'Build_Test', '(', 'PygrBuildNLMSAMegabase', ')', ':', '___EOS___']", "index": 126 }, { "content": " def test_mysqlannot(self):\n 'Test building an AnnotationDB from MySQL'\n from pygr import seqdb, cnestedlist, sqlgraph\n dm2 = pygr.Data.getResource('TEST.Seq.Genome.dm2')\n # BUILD ANNOTATION DATABASE FOR REFSEQ EXONS: MYSQL VERSION\n exon_slices = sqlgraph.SQLTableClustered(\n '%s.pygr_refGene_exonAnnot%s_dm2' % (testInputDB,\n smallSamplePostfix),\n clusterKey='chromosome', maxCache=0)\n exon_db = seqdb.AnnotationDB(exon_slices, dm2,\n sliceAttrDict=dict(id='chromosome',\n gene_id='name',\n exon_id='exon_id'))\n msa = cnestedlist.NLMSA(os.path.join(self.path,\n 'refGene_exonAnnot_SQL_dm2'), 'w',\n pairwiseMode=True, bidirectional=False)\n for id in exon_db:\n msa.addAnnotation(exon_db[id])\n exon_db.clear_cache() # not really necessary; cache should autoGC\n exon_slices.clear_cache()\n msa.build()\n exon_db.__doc__ = 'SQL Exon Annotation Database for dm2'\n pygr.Data.addResource('TEST.Annotation.SQL.dm2.exons', exon_db)\n msa.__doc__ = 'SQL NLMSA Exon for dm2'\n pygr.Data.addResource('TEST.Annotation.NLMSA.SQL.dm2.exons', msa)\n exon_schema = pygr.Data.ManyToManyRelation(dm2, exon_db,\n bindAttrs=('exon2', ))\n exon_schema.__doc__ = 'SQL Exon Schema for dm2'\n pygr.Data.addSchema('TEST.Annotation.NLMSA.SQL.dm2.exons', exon_schema)\n # BUILD ANNOTATION DATABASE FOR REFSEQ SPLICES: MYSQL VERSION\n splice_slices = sqlgraph.SQLTableClustered(\n '%s.pygr_refGene_spliceAnnot%s_dm2' % (testInputDB,\n smallSamplePostfix),\n clusterKey='chromosome', maxCache=0)\n splice_db = seqdb.AnnotationDB(splice_slices, dm2,\n sliceAttrDict=dict(id='chromosome',\n gene_id='name',\n splice_id='splice_id'))\n msa = cnestedlist.NLMSA(os.path.join(self.path,\n 'refGene_spliceAnnot_SQL_dm2'),\n 'w', pairwiseMode=True, bidirectional=False)\n for id in splice_db:\n msa.addAnnotation(splice_db[id])\n splice_db.clear_cache() # not really necessary; cache should autoGC\n splice_slices.clear_cache()\n msa.build()\n splice_db.__doc__ = 'SQL Splice Annotation Database for dm2'\n pygr.Data.addResource('TEST.Annotation.SQL.dm2.splices', splice_db)\n msa.__doc__ = 'SQL NLMSA Splice for dm2'\n pygr.Data.addResource('TEST.Annotation.NLMSA.SQL.dm2.splices', msa)\n splice_schema = pygr.Data.ManyToManyRelation(dm2, splice_db,\n bindAttrs=('splice2', ))\n splice_schema.__doc__ = 'SQL Splice Schema for dm2'\n pygr.Data.addSchema('TEST.Annotation.NLMSA.SQL.dm2.splices',\n splice_schema)\n # BUILD ANNOTATION DATABASE FOR MOST CONSERVED ELEMENTS FROM UCSC:\n # MYSQL VERSION\n ucsc_slices = sqlgraph.SQLTableClustered(\n '%s.pygr_phastConsElements15way%s_dm2' % (testInputDB,\n smallSamplePostfix),\n clusterKey='chromosome', maxCache=0)\n ucsc_db = seqdb.AnnotationDB(ucsc_slices, dm2,\n sliceAttrDict=dict(id='chromosome',\n gene_id='name',\n ucsc_id='ucsc_id'))\n msa = cnestedlist.NLMSA(os.path.join(self.path,\n 'phastConsElements15way_SQL_dm2'),\n 'w', pairwiseMode=True, bidirectional=False)\n for id in ucsc_db:\n msa.addAnnotation(ucsc_db[id])\n ucsc_db.clear_cache() # not really necessary; cache should autoGC\n ucsc_slices.clear_cache()\n msa.build()\n ucsc_db.__doc__ = 'SQL Most Conserved Elements for dm2'\n pygr.Data.addResource('TEST.Annotation.UCSC.SQL.dm2.mostconserved',\n ucsc_db)\n msa.__doc__ = 'SQL NLMSA for Most Conserved Elements for dm2'\n pygr.Data.addResource(\n 'TEST.Annotation.UCSC.NLMSA.SQL.dm2.mostconserved', msa)\n ucsc_schema = pygr.Data.ManyToManyRelation(dm2, ucsc_db,\n bindAttrs=('element2', ))\n ucsc_schema.__doc__ = \\\n 'SQL Schema for UCSC Most Conserved Elements for dm2'\n pygr.Data.addSchema('TEST.Annotation.UCSC.NLMSA.SQL.dm2.mostconserved',\n ucsc_schema)\n pygr.Data.save()\n pygr.Data.clear_cache()\n\n # QUERY TO EXON AND SPLICES ANNOTATION DATABASE\n dm2 = pygr.Data.getResource('TEST.Seq.Genome.dm2')\n exonmsa = pygr.Data.getResource('TEST.Annotation.NLMSA.SQL.dm2.exons')\n splicemsa = \\\n pygr.Data.getResource('TEST.Annotation.NLMSA.SQL.dm2.splices')\n conservedmsa = \\\n pygr.Data.getResource('TEST.Annotation.UCSC.NLMSA.SQL.dm2.mostconserved')\n exons = pygr.Data.getResource('TEST.Annotation.SQL.dm2.exons')\n splices = pygr.Data.getResource('TEST.Annotation.SQL.dm2.splices')\n mostconserved = \\\n pygr.Data.getResource('TEST.Annotation.UCSC.SQL.dm2.mostconserved')\n\n # OPEN DM2_MULTIZ15WAY NLMSA\n msa = cnestedlist.NLMSA(os.path.join(msaDir, 'dm2_multiz15way'), 'r',\n trypath=[seqDir])\n\n exonAnnotFileName = os.path.join(testInputDir,\n 'Annotation_ConservedElement_Exons%s_dm2.txt'\n % smallSamplePostfix)\n intronAnnotFileName = os.path.join(testInputDir,\n 'Annotation_ConservedElement_Introns%s_dm2.txt'\n % smallSamplePostfix)\n newexonAnnotFileName = os.path.join(self.path, 'new_Exons_dm2.txt')\n newintronAnnotFileName = os.path.join(self.path, 'new_Introns_dm2.txt')\n tmpexonAnnotFileName = self.copyFile(exonAnnotFileName)\n tmpintronAnnotFileName = self.copyFile(intronAnnotFileName)\n\n if smallSampleKey:\n chrList = [smallSampleKey]\n else:\n chrList = dm2.seqLenDict.keys()\n chrList.sort()\n\n outfile = open(newexonAnnotFileName, 'w')\n for chrid in chrList:\n slice = dm2[chrid]\n try:\n ex1 = exonmsa[slice]\n except KeyError:\n continue\n else:\n exlist1 = [(ix.exon_id, ix) for ix in ex1.keys()]\n exlist1.sort()\n for ixx, exon in exlist1:\n saveList = []\n tmp = exon.sequence\n tmpexon = exons[exon.exon_id]\n tmpslice = tmpexon.sequence # FOR REAL EXON COORDINATE\n wlist1 = 'EXON', chrid, tmpexon.exon_id, tmpexon.gene_id, \\\n tmpslice.start, tmpslice.stop\n try:\n out1 = conservedmsa[tmp]\n except KeyError:\n pass\n else:\n elementlist = [(ix.ucsc_id, ix) for ix in out1.keys()]\n elementlist.sort()\n for iyy, element in elementlist:\n if element.stop - element.start < 100:\n continue\n score = int(string.split(element.gene_id, '=')[1])\n if score < 100:\n continue\n tmp2 = element.sequence\n tmpelement = mostconserved[element.ucsc_id]\n # FOR REAL ELEMENT COORDINATE\n tmpslice2 = tmpelement.sequence\n wlist2 = wlist1 + (tmpelement.ucsc_id,\n tmpelement.gene_id,\n tmpslice2.start, tmpslice2.stop)\n slicestart, sliceend = max(tmp.start, tmp2.start),\\\n min(tmp.stop, tmp2.stop)\n tmp1 = msa.seqDict['dm2.' + chrid][slicestart:\n sliceend]\n edges = msa[tmp1].edges()\n for src, dest, e in edges:\n if src.stop - src.start < 100:\n continue\n palign, pident = e.pAligned(), e.pIdentity()\n if palign < 0.8 or pident < 0.8:\n continue\n palign, pident = '%.2f' % palign, \\\n '%.2f' % pident\n wlist3 = wlist2 + ((~msa.seqDict)[src],\n str(src), src.start,\n src.stop,\n (~msa.seqDict)[dest],\n str(dest), dest.start,\n dest.stop, palign, pident)\n saveList.append('\\t'.join(map(str, wlist3))\n + '\\n')\n saveList.sort()\n for saveline in saveList:\n outfile.write(saveline)\n outfile.close()\n md5old = hashlib.md5()\n md5old.update(open(tmpexonAnnotFileName, 'r').read())\n md5new = hashlib.md5()\n md5new.update(open(newexonAnnotFileName, 'r').read())\n assert md5old.digest() == md5new.digest()\n\n outfile = open(newintronAnnotFileName, 'w')\n for chrid in chrList:\n slice = dm2[chrid]\n try:\n sp1 = splicemsa[slice]\n except:\n continue\n else:\n splist1 = [(ix.splice_id, ix) for ix in sp1.keys()]\n splist1.sort()\n for ixx, splice in splist1:\n saveList = []\n tmp = splice.sequence\n tmpsplice = splices[splice.splice_id]\n tmpslice = tmpsplice.sequence # FOR REAL EXON COORDINATE\n wlist1 = 'INTRON', chrid, tmpsplice.splice_id, \\\n tmpsplice.gene_id, tmpslice.start, tmpslice.stop\n try:\n out1 = conservedmsa[tmp]\n except KeyError:\n pass\n else:\n elementlist = [(ix.ucsc_id, ix) for ix in out1.keys()]\n elementlist.sort()\n for iyy, element in elementlist:\n if element.stop - element.start < 100:\n continue\n score = int(string.split(element.gene_id, '=')[1])\n if score < 100:\n continue\n tmp2 = element.sequence\n tmpelement = mostconserved[element.ucsc_id]\n # FOR REAL ELEMENT COORDINATE\n tmpslice2 = tmpelement.sequence\n wlist2 = wlist1 + (tmpelement.ucsc_id,\n tmpelement.gene_id,\n tmpslice2.start, tmpslice2.stop)\n slicestart, sliceend = max(tmp.start, tmp2.start),\\\n min(tmp.stop, tmp2.stop)\n tmp1 = msa.seqDict['dm2.' + chrid][slicestart:\n sliceend]\n edges = msa[tmp1].edges()\n for src, dest, e in edges:\n if src.stop - src.start < 100:\n continue\n palign, pident = e.pAligned(), e.pIdentity()\n if palign < 0.8 or pident < 0.8:\n continue\n palign, pident = '%.2f' % palign, \\\n '%.2f' % pident\n wlist3 = wlist2 + ((~msa.seqDict)[src],\n str(src), src.start,\n src.stop,\n (~msa.seqDict)[dest],\n str(dest), dest.start,\n dest.stop, palign, pident)\n saveList.append('\\t'.join(map(str, wlist3))\n + '\\n')\n saveList.sort()\n for saveline in saveList:\n outfile.write(saveline)\n outfile.close()\n md5old = hashlib.md5()\n md5old.update(open(tmpintronAnnotFileName, 'r').read())\n md5new = hashlib.md5()\n md5new.update(open(newintronAnnotFileName, 'r').read())\n assert md5old.digest() == md5new.digest()", "metadata": "root.Build_Test.test_mysqlannot", "header": "['class', 'Build_Test', '(', 'PygrBuildNLMSAMegabase', ')', ':', '___EOS___']", "index": 404 } ]

[ { "span": "except:", "start_line": 341, "start_column": 12, "end_line": 341, "end_column": 19 }, { "span": "except:", "start_line": 598, "start_column": 12, "end_line": 598, "end_column": 19 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def testIncludeMaxBounds(self):\n\n xml = current.xml\n\n tree = xml.tree(None, maxbounds=True)\n root = tree.getroot()\n\n attrib = root.attrib\n self.assertEqual(root.tag, xml.TAG.root)\n self.assertEqual(len(attrib), 5)\n self.assertEqual(attrib[\"success\"], \"false\")\n self.assertTrue(\"latmin\" in attrib)\n self.assertTrue(\"latmax\" in attrib)\n self.assertTrue(\"lonmin\" in attrib)\n self.assertTrue(\"lonmax\" in attrib)", "metadata": "root.TreeBuilderTests.testIncludeMaxBounds", "header": "['class', 'TreeBuilderTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___NEWLINE___', '___NL___', '# -------------------------------------------------------------------------', '___NL___', '___EOS___']", "index": 37 }, { "content": " def testSelectedFields(self):\n\n include, exclude = self.stylesheet.get_fields(\"org_facility\")\n\n self.assertTrue(\"location_id\" in include)\n self.assertTrue(\"site_id\" in include)\n self.assertEqual(len(include), 2)\n\n self.assertEqual(exclude, [])", "metadata": "root.XMLFormatTests.testSelectedFields", "header": "['class', 'XMLFormatTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 219 }, { "content": " def testShowUIDs(self):\n \"\"\" Test options lookup with foreign key constraint including UIDs \"\"\"\n\n assertEqual = self.assertEqual\n assertTrue = self.assertTrue\n\n table = current.db.fotest_table\n\n xml = current.xml\n fo = xml.get_field_options(table, \"lookup\", show_uids=True)\n\n assertTrue(isinstance(fo, etree._Element))\n assertEqual(fo.tag, \"select\")\n\n ATTRIBUTE = xml.ATTRIBUTE\n VALUE = ATTRIBUTE.value\n UID = xml.UID\n options = self.records\n\n has_empty = False\n self.assertEqual(len(fo), len(options) + 1)\n for opt in fo:\n assertEqual(opt.tag, \"option\")\n\n attr = opt.attrib\n assertTrue(VALUE in attr)\n\n value = attr[VALUE]\n if value == \"\":\n has_empty = True\n self.assertFalse(UID in attr)\n assertEqual(opt.text, \"\")\n continue\n else:\n value = int(value)\n\n assertTrue(UID in attr)\n assertEqual(attr[UID], options[value][\"uuid\"])\n assertTrue(value in options)\n assertEqual(opt.text, options[value][\"name\"])\n\n assertTrue(has_empty, msg=\"Empty-option missing\")", "metadata": "root.GetFieldOptionsTests.testShowUIDs", "header": "['class', 'GetFieldOptionsTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 444 }, { "content": " def testWithHierarchyInfo(self):\n \"\"\" Test options lookup with foreign key constraint with hierarchy info \"\"\"\n\n assertEqual = self.assertEqual\n assertTrue = self.assertTrue\n\n db = current.db\n s3db = current.s3db\n table = db.fotest_lookup_table\n\n # Configure parent-field\n represent = S3Represent(lookup=\"fotest_lookup_table\")\n table.parent.requires = IS_EMPTY_OR(\n IS_ONE_OF(db,\n \"fotest_lookup_table.id\",\n represent,\n ))\n table.parent.requires = represent\n\n # Configure hierarchy\n s3db.configure(\"fotest_lookup_table\", hierarchy=\"parent\")\n S3Hierarchy.dirty(\"fotest_lookup_table\")\n\n # Insert a child node\n options = dict(self.records)\n child_node = {\"name\": \"option3\",\n \"uuid\": \"OPTION3\",\n \"parent\": options.keys()[0],\n }\n child_id = table.insert(**child_node)\n options[child_id] = child_node\n\n xml = current.xml\n table = db.fotest_table\n fo = xml.get_field_options(table, \"lookup\", show_uids=True, hierarchy=True)\n\n assertTrue(isinstance(fo, etree._Element))\n assertEqual(fo.tag, \"select\")\n\n ATTRIBUTE = xml.ATTRIBUTE\n VALUE = ATTRIBUTE.value\n PARENT = ATTRIBUTE.parent\n UID = xml.UID\n\n has_empty = False\n self.assertEqual(len(fo), len(options) + 1)\n for opt in fo:\n assertEqual(opt.tag, \"option\")\n\n attr = opt.attrib\n assertTrue(VALUE in attr)\n\n value = attr[VALUE]\n if value == \"\":\n has_empty = True\n self.assertFalse(UID in attr)\n assertEqual(opt.text, \"\")\n continue\n else:\n value = int(value)\n\n assertTrue(UID in attr)\n assertEqual(attr[UID], options[value][\"uuid\"])\n assertTrue(value in options)\n assertEqual(opt.text, options[value][\"name\"])\n\n if \"parent\" in options[value] and options[value][\"parent\"]:\n assertTrue(PARENT in attr)\n assertEqual(attr[PARENT], str(options[value][\"parent\"]))\n\n assertTrue(has_empty, msg=\"Empty-option missing\")", "metadata": "root.GetFieldOptionsTests.testWithHierarchyInfo", "header": "['class', 'GetFieldOptionsTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 488 }, { "content": " def testExportOptionsXML(self):\n \"\"\" Test Export Options (all options, XML) \"\"\"\n\n assertEqual = self.assertEqual\n assertTrue = self.assertTrue\n\n options = dict(self.records)\n\n # Request options\n resource = current.s3db.resource(\"fotest_table\")\n result = resource.export_options(fields=[\"lookup\"])\n fo = etree.XML(result)\n\n # Inspect result\n xml = current.xml\n ATTRIBUTE = xml.ATTRIBUTE\n VALUE = ATTRIBUTE.value\n UID = xml.UID\n\n has_empty = False\n self.assertEqual(len(fo), len(options) + 1)\n for opt in fo:\n assertEqual(opt.tag, \"option\")\n attr = opt.attrib\n assertTrue(VALUE in attr)\n value = attr[VALUE]\n if value == \"\":\n has_empty = True\n self.assertFalse(UID in attr)\n assertEqual(opt.text, None)\n continue\n else:\n value = int(value)\n assertTrue(value in options)\n assertEqual(opt.text, options[value][\"name\"])\n\n assertTrue(has_empty, msg=\"Empty-option missing\")", "metadata": "root.GetFieldOptionsTests.testExportOptionsXML", "header": "['class', 'GetFieldOptionsTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 561 }, { "content": " def testExportOptionsXMLHierarchy(self):\n \"\"\" Test Export Options (all options, XML+hierarchy) \"\"\"\n\n assertEqual = self.assertEqual\n assertTrue = self.assertTrue\n\n # Configure parent-field\n db = current.db\n table = db.fotest_lookup_table\n represent = S3Represent(lookup=\"fotest_lookup_table\")\n table.parent.requires = IS_EMPTY_OR(\n IS_ONE_OF(db,\n \"fotest_lookup_table.id\",\n represent,\n ))\n table.parent.requires = represent\n\n # Configure hierarchy\n s3db = current.s3db\n s3db.configure(\"fotest_lookup_table\", hierarchy=\"parent\")\n S3Hierarchy.dirty(\"fotest_lookup_table\")\n\n # Insert a child node\n options = dict(self.records)\n child_node = {\"name\": \"option3\",\n \"uuid\": \"OPTION3\",\n \"parent\": options.keys()[0],\n }\n child_id = table.insert(**child_node)\n options[child_id] = child_node\n\n # Request options\n resource = s3db.resource(\"fotest_table\")\n result = resource.export_options(fields=[\"lookup\"], hierarchy=True)\n fo = etree.XML(result)\n\n # Inspect result\n xml = current.xml\n ATTRIBUTE = xml.ATTRIBUTE\n VALUE = ATTRIBUTE.value\n PARENT = ATTRIBUTE.parent\n UID = xml.UID\n\n has_empty = False\n self.assertEqual(len(fo), len(options) + 1)\n for opt in fo:\n assertEqual(opt.tag, \"option\")\n\n attr = opt.attrib\n assertTrue(VALUE in attr)\n\n value = attr[VALUE]\n if value == \"\":\n has_empty = True\n self.assertFalse(UID in attr)\n assertEqual(opt.text, None)\n continue\n else:\n value = int(value)\n\n assertTrue(value in options)\n assertEqual(opt.text, options[value][\"name\"])\n\n if \"parent\" in options[value] and options[value][\"parent\"]:\n assertTrue(PARENT in attr)\n assertEqual(attr[PARENT], str(options[value][\"parent\"]))\n\n assertTrue(has_empty, msg=\"Empty-option missing\")", "metadata": "root.GetFieldOptionsTests.testExportOptionsXMLHierarchy", "header": "['class', 'GetFieldOptionsTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 600 }, { "content": " def testExportOptionsAllOptsJSON(self):\n \"\"\" Test export options, JSON, all options \"\"\"\n\n assertEqual = self.assertEqual\n assertTrue = self.assertTrue\n\n options = dict(self.records)\n\n # Request options\n resource = current.s3db.resource(\"fotest_table\")\n result = resource.export_options(fields=[\"lookup\"],\n as_json=True)\n fo = json.loads(result)\n\n # Inspect result\n has_empty = False\n assertTrue(isinstance(fo, dict))\n assertTrue(\"option\" in fo)\n assertTrue(isinstance(fo[\"option\"], list))\n assertEqual(len(fo[\"option\"]), len(options) + 1)\n for opt in fo[\"option\"]:\n value = opt[\"@value\"]\n if value == \"\":\n has_empty = True\n self.assertFalse(\"$\" in opt)\n continue\n else:\n value = int(value)\n assertTrue(value in options)\n assertEqual(opt[\"$\"], options[value][\"name\"])\n assertTrue(has_empty, msg=\"Empty-option missing\")", "metadata": "root.GetFieldOptionsTests.testExportOptionsAllOptsJSON", "header": "['class', 'GetFieldOptionsTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 670 }, { "content": " def testExportOptionsAllOptsJSONHierarchy(self):\n \"\"\" Test export options, JSON, all options+hierarchy \"\"\"\n\n assertEqual = self.assertEqual\n assertTrue = self.assertTrue\n\n # Configure parent-field\n db = current.db\n table = db.fotest_lookup_table\n represent = S3Represent(lookup=\"fotest_lookup_table\")\n table.parent.requires = IS_EMPTY_OR(\n IS_ONE_OF(db,\n \"fotest_lookup_table.id\",\n represent,\n ))\n table.parent.requires = represent\n\n # Configure hierarchy\n s3db = current.s3db\n s3db.configure(\"fotest_lookup_table\", hierarchy=\"parent\")\n S3Hierarchy.dirty(\"fotest_lookup_table\")\n\n # Insert a child node\n options = dict(self.records)\n child_node = {\"name\": \"option3\",\n \"uuid\": \"OPTION3\",\n \"parent\": options.keys()[0],\n }\n child_id = table.insert(**child_node)\n options[child_id] = child_node\n\n # Request options\n resource = s3db.resource(\"fotest_table\")\n result = resource.export_options(fields=[\"lookup\"],\n hierarchy=True,\n as_json=True)\n fo = json.loads(result)\n\n # Inspect result\n has_empty = False\n assertTrue(isinstance(fo, dict))\n assertTrue(\"option\" in fo)\n assertTrue(isinstance(fo[\"option\"], list))\n assertEqual(len(fo[\"option\"]), len(options) + 1)\n for opt in fo[\"option\"]:\n value = opt[\"@value\"]\n if value == \"\":\n has_empty = True\n self.assertFalse(\"$\" in opt)\n continue\n else:\n value = int(value)\n assertTrue(value in options)\n assertEqual(opt[\"$\"], options[value][\"name\"])\n if \"parent\" in options[value] and options[value][\"parent\"]:\n assertTrue(\"@parent\" in opt)\n assertEqual(opt[\"@parent\"], str(options[value][\"parent\"]))\n\n assertTrue(has_empty, msg=\"Empty-option missing\")", "metadata": "root.GetFieldOptionsTests.testExportOptionsAllOptsJSONHierarchy", "header": "['class', 'GetFieldOptionsTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 703 } ]

[ { "span": "self.assertTrue(\"latmin\" in attrib)", "start_line": 48, "start_column": 8, "end_line": 48, "end_column": 43 }, { "span": "self.assertTrue(\"latmax\" in attrib)", "start_line": 49, "start_column": 8, "end_line": 49, "end_column": 43 }, { "span": "self.assertTrue(\"lonmin\" in attrib)", "start_line": 50, "start_column": 8, "end_line": 50, "end_column": 43 }, { "span": "self.assertTrue(\"lonmax\" in attrib)", "start_line": 51, "start_column": 8, "end_line": 51, "end_column": 43 }, { "span": "self.assertTrue(\"location_id\" in include)", "start_line": 223, "start_column": 8, "end_line": 223, "end_column": 49 }, { "span": "self.assertTrue(\"site_id\" in include)", "start_line": 224, "start_column": 8, "end_line": 224, "end_column": 45 }, { "span": "self.assertFalse(UID in attr)", "start_line": 474, "start_column": 16, "end_line": 474, "end_column": 45 }, { "span": "self.assertFalse(UID in attr)", "start_line": 543, "start_column": 16, "end_line": 543, "end_column": 45 }, { "span": "self.assertFalse(UID in attr)", "start_line": 589, "start_column": 16, "end_line": 589, "end_column": 45 }, { "span": "self.assertFalse(UID in attr)", "start_line": 654, "start_column": 16, "end_line": 654, "end_column": 45 }, { "span": "self.assertFalse(\"$\" in opt)", "start_line": 694, "start_column": 16, "end_line": 694, "end_column": 44 }, { "span": "self.assertFalse(\"$\" in opt)", "start_line": 751, "start_column": 16, "end_line": 751, "end_column": 44 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "# Copyright (C) 2011 Lukas Lalinsky\n# Distributed under the MIT license, see the LICENSE file for details.\n\nimport logging\nimport uuid\nfrom sqlalchemy import sql\nfrom acoustid import tables as schema, const\nfrom acoustid.data.fingerprint import lookup_fingerprint, insert_fingerprint, inc_fingerprint_submission_count, FingerprintSearcher\nfrom acoustid.data.musicbrainz import resolve_mbid_redirect\n\nlogger = logging.getLogger(__name__)\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def resolve_track_gid(conn, gid):\n query = sql.select([schema.track.c.id, schema.track.c.new_id],\n schema.track.c.gid == gid)\n row = conn.execute(query).first()\n if row is None:\n return None\n track_id, new_track_id = row\n if new_track_id is None:\n return track_id\n query = sql.select([schema.track.c.id],\n schema.track.c.id == new_track_id)\n return conn.execute(query).scalar()", "metadata": "root.resolve_track_gid", "header": "['module', '___EOS___']", "index": 13 }, { "content": "def lookup_mbids(conn, track_ids):\n \"\"\"\n Lookup MBIDs for the specified AcoustID track IDs.\n \"\"\"\n if not track_ids:\n return {}\n query = sql.select([\n schema.track_mbid.c.track_id,\n schema.track_mbid.c.mbid,\n schema.track_mbid.c.submission_count,\n ])\n query = query.where(sql.and_(schema.track_mbid.c.track_id.in_(track_ids), schema.track_mbid.c.disabled == False))\n query = query.order_by(schema.track_mbid.c.mbid)\n results = {}\n for track_id, mbid, sources in conn.execute(query):\n results.setdefault(track_id, []).append((mbid, sources))\n return results", "metadata": "root.lookup_mbids", "header": "['module', '___EOS___']", "index": 27 }, { "content": "def lookup_meta_ids(conn, track_ids):\n if not track_ids:\n return {}\n query = sql.select(\n [schema.track_meta.c.track_id, schema.track_meta.c.meta_id],\n sql.and_(schema.track_meta.c.track_id.in_(track_ids))).order_by(schema.track_meta.c.meta_id)\n results = {}\n for track_id, meta_id in conn.execute(query):\n results.setdefault(track_id, []).append(meta_id)\n return results", "metadata": "root.lookup_meta_ids", "header": "['module', '___EOS___']", "index": 46 }, { "content": "def lookup_tracks(conn, mbids):\n if not mbids:\n return {}\n query = sql.select(\n [schema.track_mbid.c.track_id, schema.track.c.gid, schema.track_mbid.c.mbid],\n sql.and_(schema.track_mbid.c.mbid.in_(mbids), schema.track_mbid.c.disabled == False),\n from_obj=schema.track_mbid.join(schema.track, schema.track_mbid.c.track_id == schema.track.c.id)). \\\n order_by(schema.track_mbid.c.track_id)\n results = {}\n for track_id, track_gid, mbid in conn.execute(query):\n results.setdefault(mbid, []).append({'id': track_id, 'gid': track_gid})\n return results", "metadata": "root.lookup_tracks", "header": "['module', '___EOS___']", "index": 58 }, { "content": "def merge_mbids(conn, target_mbid, source_mbids):\n \"\"\"\n Merge the specified MBIDs.\n \"\"\"\n logger.info(\"Merging MBIDs %s into %s\", ', '.join(source_mbids), target_mbid)\n with conn.begin():\n query = sql.select(\n [\n sql.func.min(schema.track_mbid.c.id).label('id'),\n sql.func.array_agg(schema.track_mbid.c.id).label('all_ids'),\n schema.track_mbid.c.track_id,\n sql.func.every(schema.track_mbid.c.disabled).label('all_disabled'),\n sql.func.sum(schema.track_mbid.c.submission_count).label('count'),\n ],\n schema.track_mbid.c.mbid.in_(source_mbids + [target_mbid]),\n group_by=schema.track_mbid.c.track_id)\n rows = conn.execute(query).fetchall()\n to_delete = set()\n to_update = []\n for row in rows:\n old_ids = set(row['all_ids'])\n old_ids.remove(row['id'])\n to_delete.update(old_ids)\n to_update.append((old_ids, row))\n if old_ids:\n update_stmt = schema.track_mbid_source.update().where(schema.track_mbid_source.c.track_mbid_id.in_(old_ids))\n conn.execute(update_stmt.values(track_mbid_id=row['id']))\n update_stmt = schema.track_mbid_change.update().where(schema.track_mbid_change.c.track_mbid_id.in_(old_ids))\n conn.execute(update_stmt.values(track_mbid_id=row['id']))\n update_stmt = schema.track_mbid_flag.update().where(schema.track_mbid_flag.c.track_mbid_id.in_(old_ids))\n conn.execute(update_stmt.values(track_mbid_id=row['id']))\n if to_delete:\n delete_stmt = schema.track_mbid.delete().where(\n schema.track_mbid.c.id.in_(to_delete))\n conn.execute(delete_stmt)\n for old_ids, row in to_update:\n update_stmt = schema.track_mbid.update().where(schema.track_mbid.c.id == row['id'])\n conn.execute(update_stmt.values(submission_count=row['count'],\n mbid=target_mbid, disabled=row['all_disabled']))", "metadata": "root.merge_mbids", "header": "['module', '___EOS___']", "index": 72 }, { "content": "def merge_missing_mbids(conn):\n \"\"\"\n Lookup which MBIDs has been merged in MusicBrainz and merge then\n in the AcoustID database as well.\n \"\"\"\n logger.debug(\"Merging missing MBIDs\")\n results = conn.execute(\"\"\"\n SELECT DISTINCT tm.mbid AS old_mbid, mt.gid AS new_mbid\n FROM track_mbid tm\n JOIN musicbrainz.recording_gid_redirect mgr ON tm.mbid = mgr.gid\n JOIN musicbrainz.recording mt ON mt.id = mgr.new_id\n \"\"\")\n merge = {}\n for old_mbid, new_mbid in results:\n merge.setdefault(new_mbid, []).append(old_mbid)\n for new_mbid, old_mbids in merge.iteritems():\n merge_mbids(conn, new_mbid, old_mbids)", "metadata": "root.merge_missing_mbids", "header": "['module', '___EOS___']", "index": 113 }, { "content": "def _merge_tracks_gids(conn, name_with_id, target_id, source_ids):\n name = name_with_id.replace('_id', '')\n tab = schema.metadata.tables['track_%s' % name]\n col = tab.columns[name_with_id]\n tab_src = schema.metadata.tables['track_%s_source' % name]\n col_src = tab_src.columns['track_%s_id' % name]\n if name == 'mbid':\n tab_chg = schema.metadata.tables['track_%s_change' % name]\n col_chg = tab_chg.columns['track_%s_id' % name]\n tab_flag = schema.metadata.tables['track_%s_flag' % name]\n col_flag = tab_flag.columns['track_%s_id' % name]\n columns = [\n sql.func.min(tab.c.id).label('id'),\n sql.func.array_agg(tab.c.id).label('all_ids'),\n sql.func.sum(tab.c.submission_count).label('count'),\n ]\n if name == 'mbid':\n columns.append(sql.func.every(schema.track_mbid.c.disabled).label('all_disabled'))\n query = sql.select(columns, tab.c.track_id.in_(source_ids + [target_id]), group_by=col)\n rows = conn.execute(query).fetchall()\n to_delete = set()\n to_update = []\n for row in rows:\n old_ids = set(row['all_ids'])\n old_ids.remove(row['id'])\n to_delete.update(old_ids)\n to_update.append((old_ids, row))\n if old_ids:\n update_stmt = tab_src.update().where(col_src.in_(old_ids))\n conn.execute(update_stmt.values({col_src: row['id']}))\n if name == 'mbid':\n update_stmt = tab_chg.update().where(col_chg.in_(old_ids))\n conn.execute(update_stmt.values({col_chg: row['id']}))\n update_stmt = tab_flag.update().where(col_flag.in_(old_ids))\n conn.execute(update_stmt.values({col_flag: row['id']}))\n if to_delete:\n delete_stmt = tab.delete().where(tab.c.id.in_(to_delete))\n conn.execute(delete_stmt)\n for old_ids, row in to_update:\n update_stmt = tab.update().where(tab.c.id == row['id'])\n if name == 'mbid':\n conn.execute(update_stmt.values(submission_count=row['count'], track_id=target_id, disabled=row['all_disabled']))\n else:\n conn.execute(update_stmt.values(submission_count=row['count'], track_id=target_id))", "metadata": "root._merge_tracks_gids", "header": "['module', '___EOS___']", "index": 132 }, { "content": "def merge_tracks(conn, target_id, source_ids):\n \"\"\"\n Merge the specified tracks.\n \"\"\"\n logger.info(\"Merging tracks %s into %s\", ', '.join(map(str, source_ids)), target_id)\n with conn.begin():\n _merge_tracks_gids(conn, 'mbid', target_id, source_ids)\n _merge_tracks_gids(conn, 'puid', target_id, source_ids)\n _merge_tracks_gids(conn, 'meta_id', target_id, source_ids)\n _merge_tracks_gids(conn, 'foreignid_id', target_id, source_ids)\n # XXX don't move duplicate fingerprints\n update_stmt = schema.fingerprint.update().where(\n schema.fingerprint.c.track_id.in_(source_ids))\n conn.execute(update_stmt.values(track_id=target_id))\n update_stmt = schema.track.update().where(\n sql.or_(schema.track.c.id.in_(source_ids),\n schema.track.c.new_id.in_(source_ids)))\n conn.execute(update_stmt.values(new_id=target_id))", "metadata": "root.merge_tracks", "header": "['module', '___EOS___']", "index": 178 }, { "content": "def insert_track(conn):\n \"\"\"\n Insert a new track into the database\n \"\"\"\n insert_stmt = schema.track.insert().values({'gid': str(uuid.uuid4())})\n id = conn.execute(insert_stmt).inserted_primary_key[0]\n logger.debug(\"Inserted track %r\", id)\n return id", "metadata": "root.insert_track", "header": "['module', '___EOS___']", "index": 198 }, { "content": "def _insert_gid(conn, tab, tab_src, col, name, track_id, gid, submission_id=None, source_id=None):\n cond = sql.and_(tab.c.track_id == track_id, col == gid)\n query = sql.select([tab.c.id], cond)\n id = conn.execute(query).scalar()\n if id is not None:\n update_stmt = tab.update().where(cond)\n values = {'submission_count': sql.text('submission_count+1')}\n conn.execute(update_stmt.values(**values))\n else:\n insert_stmt = tab.insert().values({\n 'track_id': track_id, name: gid,\n 'submission_count': 1})\n id = conn.execute(insert_stmt).inserted_primary_key[0]\n logger.debug(\"Added %s %s to track %d\", name.upper(), gid, track_id)\n insert_stmt = tab_src.insert().values({\n 'track_%s_id' % name.replace('_id', ''): id,\n 'submission_id': submission_id,\n 'source_id': source_id,\n })\n conn.execute(insert_stmt)\n return True", "metadata": "root._insert_gid", "header": "['module', '___EOS___']", "index": 208 }, { "content": "def insert_mbid(conn, track_id, mbid, submission_id=None, source_id=None):\n return _insert_gid(conn, schema.track_mbid, schema.track_mbid_source,\n schema.track_mbid.c.mbid, 'mbid', track_id, mbid, submission_id, source_id)", "metadata": "root.insert_mbid", "header": "['module', '___EOS___']", "index": 231 }, { "content": "def insert_puid(conn, track_id, puid, submission_id=None, source_id=None):\n return _insert_gid(conn, schema.track_puid, schema.track_puid_source,\n schema.track_puid.c.puid, 'puid', track_id, puid, submission_id, source_id)", "metadata": "root.insert_puid", "header": "['module', '___EOS___']", "index": 236 }, { "content": "def insert_track_foreignid(conn, track_id, foreignid_id, submission_id=None, source_id=None):\n return _insert_gid(conn, schema.track_foreignid, schema.track_foreignid_source,\n schema.track_foreignid.c.foreignid_id, 'foreignid_id', track_id, foreignid_id,\n submission_id, source_id)", "metadata": "root.insert_track_foreignid", "header": "['module', '___EOS___']", "index": 241 }, { "content": "def insert_track_meta(conn, track_id, meta_id, submission_id=None, source_id=None):\n return _insert_gid(conn, schema.track_meta, schema.track_meta_source,\n schema.track_meta.c.meta_id, 'meta_id', track_id, meta_id, submission_id, source_id)", "metadata": "root.insert_track_meta", "header": "['module', '___EOS___']", "index": 247 }, { "content": "def calculate_fingerprint_similarity_matrix(conn, track_ids):\n fp1 = schema.fingerprint.alias('fp1')\n fp2 = schema.fingerprint.alias('fp2')\n src = fp1.join(fp2, fp1.c.id < fp2.c.id)\n cond = sql.and_(fp1.c.track_id.in_(track_ids), fp2.c.track_id.in_(track_ids))\n query = sql.select([\n fp1.c.id, fp2.c.id,\n sql.func.acoustid_compare2(fp1.c.fingerprint, fp2.c.fingerprint, const.TRACK_MAX_OFFSET),\n ], cond, from_obj=src).order_by(fp1.c.id, fp2.c.id)\n result = {}\n for fp1_id, fp2_id, score in conn.execute(query):\n result.setdefault(fp1_id, {})[fp2_id] = score\n result.setdefault(fp2_id, {})[fp1_id] = score\n result.setdefault(fp1_id, {})[fp1_id] = 1.0\n result.setdefault(fp2_id, {})[fp2_id] = 1.0\n return result", "metadata": "root.calculate_fingerprint_similarity_matrix", "header": "['module', '___EOS___']", "index": 252 }, { "content": "def can_merge_tracks(conn, track_ids):\n fp1 = schema.fingerprint.alias('fp1')\n fp2 = schema.fingerprint.alias('fp2')\n join_cond = sql.and_(fp1.c.id < fp2.c.id, fp1.c.track_id < fp2.c.track_id)\n src = fp1.join(fp2, join_cond)\n cond = sql.and_(fp1.c.track_id.in_(track_ids), fp2.c.track_id.in_(track_ids))\n query = sql.select([\n fp1.c.track_id, fp2.c.track_id,\n sql.func.max(sql.func.abs(fp1.c.length - fp2.c.length)),\n sql.func.min(sql.func.acoustid_compare2(fp1.c.fingerprint, fp2.c.fingerprint, const.TRACK_MAX_OFFSET)),\n ], cond, from_obj=src).group_by(fp1.c.track_id, fp2.c.track_id).order_by(fp1.c.track_id, fp2.c.track_id)\n rows = conn.execute(query)\n merges = {}\n for fp1_id, fp2_id, length_diff, score in rows:\n if score < const.TRACK_GROUP_MERGE_THRESHOLD:\n continue\n if length_diff > const.FINGERPRINT_MAX_LENGTH_DIFF:\n continue\n group = fp1_id\n if group in merges:\n group = merges[group]\n merges[fp2_id] = group\n result = []\n for group in set(merges.values()):\n result.append(set([group] + [i for i in merges if merges[i] == group]))\n return result", "metadata": "root.can_merge_tracks", "header": "['module', '___EOS___']", "index": 270 }, { "content": "def can_add_fp_to_track(conn, track_id, fingerprint, length):\n cond = schema.fingerprint.c.track_id == track_id\n query = sql.select([\n sql.func.acoustid_compare2(schema.fingerprint.c.fingerprint, fingerprint, const.TRACK_MAX_OFFSET),\n schema.fingerprint.c.length,\n ], cond, from_obj=schema.fingerprint)\n for fp_score, fp_length in conn.execute(query):\n if fp_score < const.TRACK_GROUP_MERGE_THRESHOLD:\n return False\n if abs(fp_length - length) > const.FINGERPRINT_MAX_LENGTH_DIFF:\n return False\n return True", "metadata": "root.can_add_fp_to_track", "header": "['module', '___EOS___']", "index": 298 }, { "content": "def find_track_duplicates(conn, fingerprint, index=None):\n with conn.begin():\n searcher = FingerprintSearcher(conn, index)\n searcher.min_score = const.TRACK_MERGE_THRESHOLD\n matches = searcher.search(fingerprint['fingerprint'], fingerprint['length'])\n if not matches:\n logger.debug(\"Not matched itself!\")\n return\n logged = False\n match = matches[0]\n all_track_ids = set()\n possible_track_ids = set()\n for m in matches:\n if m['track_id'] in all_track_ids:\n continue\n all_track_ids.add(m['track_id'])\n if can_add_fp_to_track(conn, m['track_id'], fingerprint['fingerprint'], fingerprint['length']):\n if m['id'] != fingerprint['id']:\n if not logged:\n logger.debug(\"Deduplicating fingerprint %d\", fingerprint['id'])\n logged = True\n logger.debug(\"Fingerprint %d with track %d is %d%% similar\", m['id'], m['track_id'], m['score'] * 100)\n possible_track_ids.add(m['track_id'])\n if len(possible_track_ids) > 1:\n for group in can_merge_tracks(conn, possible_track_ids):\n if len(group) > 1:\n target_track_id = min(group)\n group.remove(target_track_id)\n #logger.debug(\"Would like to merge tracks %r into %d\", list(group), target_track_id)\n merge_tracks(conn, target_track_id, list(group))\n #raise Exception(1)\n break\n conn.execute(\"INSERT INTO fingerprint_deduplicate (id) VALUES (%s)\", fingerprint['id'])", "metadata": "root.find_track_duplicates", "header": "['module', '___EOS___']", "index": 312 }, { "content": "def find_duplicates(conn, limit=50, index=None):\n query = \"SELECT f.id, fingerprint, length FROM fingerprint f LEFT JOIN fingerprint_deduplicate d ON f.id=d.id WHERE d.id IS NULL ORDER BY f.id LIMIT 1000\"\n for fingerprint in conn.execute(query):\n find_track_duplicates(conn, fingerprint, index=index)", "metadata": "root.find_duplicates", "header": "['module', '___EOS___']", "index": 347 } ]

[ { "span": "from acoustid.data.fingerprint import lookup_fingerprint, insert_fingerprint, inc_fingerprint_submission_count, FingerprintSearcher", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 131 }, { "span": "from acoustid.data.musicbrainz import resolve_mbid_redirect", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 59 } ]

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[ { "content": "from social.backends.live import LiveOAuth2 as LiveBackend\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "from social.backends.live import LiveOAuth2 as LiveBackend", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 58 } ]

[]

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[ { "content": "def delete_table(conn, sleep_interval, table_name):\n if not args.dataOnly:\n while True:\n # delete table if exists\n table_exist = True\n try:\n conn.delete_table(table_name)\n except boto.exception.JSONResponseError, e:\n if e.body[\"__type\"] == \"com.amazonaws.dynamodb.v20120810#ResourceNotFoundException\":\n table_exist = False\n logging.info(table_name + \" table deleted!\")\n break\n elif e.body[\"__type\"] == \"com.amazonaws.dynamodb.v20120810#LimitExceededException\":\n logging.info(\"Limit exceeded, retrying deletion of \" + table_name + \"..\")\n time.sleep(sleep_interval)\n elif e.body[\"__type\"] == \"com.amazon.coral.availability#ThrottlingException\":\n logging.info(\"Control plane limit exceeded, retrying deletion of \" + table_name + \"..\")\n time.sleep(sleep_interval)\n elif e.body[\"__type\"] == \"com.amazonaws.dynamodb.v20120810#ResourceInUseException\":\n logging.info(table_name + \" table is being deleted..\")\n time.sleep(sleep_interval)\n else:\n logging.exception(e)\n sys.exit(1)\n\n # if table exists, wait till deleted\n if table_exist:\n try:\n while True:\n logging.info(\"Waiting for \" + table_name + \" table to be deleted.. [\" + conn.describe_table(table_name)[\"Table\"][\"TableStatus\"] +\"]\")\n time.sleep(sleep_interval)\n except boto.exception.JSONResponseError, e:\n if e.body[\"__type\"] == \"com.amazonaws.dynamodb.v20120810#ResourceNotFoundException\":\n logging.info(table_name + \" table deleted.\")\n pass\n else:\n logging.exception(e)\n sys.exit(1)", "metadata": "root.delete_table", "header": "['module', '___EOS___']", "index": 71 } ]

[ { "span": "try:", "start_line": 98, "start_column": 6, "end_line": 98, "end_column": 10 } ]

[]

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[ { "content": "def test_errors():\n with pytest.raises(Exception) as excinfo:\n aes = Cipher(\"AES-128-XXF\")\n assert 'Unknown' in str(excinfo.value)", "metadata": "root.test_errors", "header": "['module', '___EOS___']", "index": 350 }, { "content": "def test_aes_gcm_encrypt():\n aes = Cipher.aes_128_gcm()\n assert aes.gcm\n\n enc = aes.op(key=b\"A\"*16, iv=b\"A\"*16)\n\n enc.update_associated(b\"Hello\")\n ciphertext = enc.update(b\"World!\")\n c2 = enc.finalize()\n assert c2 == b''\n\n tag = enc.get_tag(16)\n assert len(tag) == 16", "metadata": "root.test_aes_gcm_encrypt", "header": "['module', '___EOS___']", "index": 397 }, { "content": "def test_aes_gcm_encrypt_192():\n aes = Cipher.aes_192_gcm()\n assert aes.gcm\n\n enc = aes.op(key=b\"A\"*24, iv=b\"A\"*16)\n\n enc.update_associated(b\"Hello\")\n ciphertext = enc.update(b\"World!\")\n c2 = enc.finalize()\n assert c2 == b''\n\n tag = enc.get_tag(16)\n assert len(tag) == 16", "metadata": "root.test_aes_gcm_encrypt_192", "header": "['module', '___EOS___']", "index": 411 }, { "content": "def test_aes_gcm_encrypt_256():\n aes = Cipher.aes_256_gcm()\n assert aes.gcm\n\n enc = aes.op(key=b\"A\"*32, iv=b\"A\"*16)\n\n enc.update_associated(b\"Hello\")\n ciphertext = enc.update(b\"World!\")\n c2 = enc.finalize()\n assert c2 == b''\n\n tag = enc.get_tag(16)\n assert len(tag) == 16", "metadata": "root.test_aes_gcm_encrypt_256", "header": "['module', '___EOS___']", "index": 426 }, { "content": "def test_gcm_dec_badassoc(aesenc):\n aes, enc, ciphertext, tag = aesenc\n\n dec = aes.dec(key=b\"A\"*16, iv=b\"A\"*16)\n dec.update_associated(b\"H4llo\")\n plaintext = dec.update(ciphertext)\n\n dec.set_tag(tag)\n\n with pytest.raises(Exception) as excinfo:\n dec.finalize()\n assert \"Cipher\" in str(excinfo.value)", "metadata": "root.test_gcm_dec_badassoc", "header": "['module', '___EOS___']", "index": 470 }, { "content": "def test_gcm_dec_badkey(aesenc):\n aes, enc, ciphertext, tag = aesenc\n\n dec = aes.dec(key=b\"B\"*16, iv=b\"A\"*16)\n dec.update_associated(b\"Hello\")\n plaintext = dec.update(ciphertext)\n\n dec.set_tag(tag)\n\n with pytest.raises(Exception) as excinfo:\n dec.finalize()\n assert \"Cipher\" in str(excinfo.value)", "metadata": "root.test_gcm_dec_badkey", "header": "['module', '___EOS___']", "index": 483 }, { "content": "def test_gcm_dec_badiv(aesenc):\n aes, enc, ciphertext, tag = aesenc\n dec = aes.dec(key=b\"A\"*16, iv=b\"B\"*16)\n dec.update_associated(b\"Hello\")\n plaintext = dec.update(ciphertext)\n\n dec.set_tag(tag)\n\n with pytest.raises(Exception) as excinfo:\n dec.finalize()\n assert \"Cipher\" in str(excinfo.value)", "metadata": "root.test_gcm_dec_badiv", "header": "['module', '___EOS___']", "index": 496 }, { "content": "def test_aes_gcm_different_IV():\n aes = Cipher(\"aes-128-gcm\")\n\n enc = aes.op(key=b\"A\"*16, iv=b\"A\"*16)\n enc.update_associated(b\"Hello\")\n ciphertext = enc.update(b\"World!\")\n c2 = enc.finalize()\n tag = enc.get_tag(16)\n\n enc = aes.op(key=b\"A\"*16, iv=b\"A\"*16)\n enc.update_associated(b\"Hello\")\n ciphertext2 = enc.update(b\"World!\")\n c2 = enc.finalize()\n tag2 = enc.get_tag(16)\n\n enc = aes.op(key=b\"A\"*16, iv=b\"B\"*16)\n enc.update_associated(b\"Hello\")\n ciphertext3 = enc.update(b\"World!\")\n c2 = enc.finalize()\n tag3 = enc.get_tag(16)\n\n assert ciphertext == ciphertext2\n assert ciphertext != ciphertext3", "metadata": "root.test_aes_gcm_different_IV", "header": "['module', '___EOS___']", "index": 532 } ]

[ { "span": "aes ", "start_line": 352, "start_column": 8, "end_line": 352, "end_column": 11 }, { "span": "ciphertext ", "start_line": 404, "start_column": 4, "end_line": 404, "end_column": 14 }, { "span": "ciphertext ", "start_line": 418, "start_column": 4, "end_line": 418, "end_column": 14 }, { "span": "ciphertext ", "start_line": 433, "start_column": 4, "end_line": 433, "end_column": 14 }, { "span": "plaintext ", "start_line": 475, "start_column": 4, "end_line": 475, "end_column": 13 }, { "span": "plaintext ", "start_line": 488, "start_column": 4, "end_line": 488, "end_column": 13 }, { "span": "plaintext ", "start_line": 500, "start_column": 4, "end_line": 500, "end_column": 13 }, { "span": "tag ", "start_line": 539, "start_column": 4, "end_line": 539, "end_column": 7 }, { "span": "tag2 ", "start_line": 545, "start_column": 4, "end_line": 545, "end_column": 8 }, { "span": "c2 ", "start_line": 550, "start_column": 4, "end_line": 550, "end_column": 6 }, { "span": "tag3 ", "start_line": 551, "start_column": 4, "end_line": 551, "end_column": 8 } ]

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"b", "\"", "A", "\"_", "*_", "16_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "enc_", "._", "update", "\\u", "associate", "d_", "(_", "b", "\"", "Hell", "o", "\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "ciphertext_", "=_", "enc_", "._", "update_", "(_", "b", "\"", "Wor", "ld", "!\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "c2_", "=_", "enc_", "._", "finalize_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "tag_", "=_", "enc_", "._", "get", "\\u", "tag_", "(_", "16_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "enc_", "=_", "aes", "_", "._", "op_", "(_", "key_", "=_", "b", "\"", "A", "\"_", "*_", "16_", ",_", "iv_", "=_", "b", "\"", "A", "\"_", "*_", "16_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "enc_", "._", "update", "\\u", "associate", "d_", "(_", "b", "\"", "Hell", "o", "\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "cipher", "text2_", "=_", "enc_", "._", "update_", "(_", "b", "\"", "Wor", "ld", "!\"_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "c2_", "=_", "enc_", "._", "finalize_", "(_", 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[ { "content": "#!/usr/bin/env python\n#\n# Copyright 2007 Google Inc.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n#\n\n\n\n\n\"\"\"Preloads many modules to reduce loading time of third-party code.\"\"\"\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nimport os\n_original_os_urandom = os.urandom\nos.urandom = os_urandom_replacement\nimport random\n\n\n\nos.urandom = _original_os_urandom\nrandom._urandom = _original_os_urandom\n\n\nimport BaseHTTPServer\nimport Bastion\nimport CGIHTTPServer\nimport ConfigParser\nimport Cookie\nimport DocXMLRPCServer\nimport HTMLParser\nimport MimeWriter\nimport Queue\nimport SimpleHTTPServer\nimport SimpleXMLRPCServer\nimport SocketServer\nimport StringIO\nimport UserDict\nimport UserList\nimport UserString\nimport aifc\nimport anydbm\n\n\nimport atexit\nimport audiodev\nimport base64\nimport bdb\nimport binhex\nimport bisect\nimport bz2\n\nimport calendar\nimport cgi\nimport cgitb\nimport chunk\nimport cmd\nimport code\nimport codecs\nimport codeop\nimport colorsys\nimport commands\n\n\nimport cookielib\nimport copy\nimport copy_reg\nimport csv\nimport datetime\n\n\nimport difflib\nimport dircache\nimport dis\nimport doctest\nimport dumbdbm\nimport filecmp\nimport fileinput\nimport fnmatch\nimport formatter\nimport fpformat\nimport ftplib\n\nimport getopt\nimport getpass\nimport gettext\nimport glob\n\nimport gzip\n\nimport heapq\nimport hmac\nimport htmlentitydefs\nimport htmllib\nimport httplib\n\nimport imaplib\nimport imghdr\nimport imputil\nimport inspect\nimport keyword\nimport linecache\nimport locale\nimport logging\nimport macpath\nimport macurl2path\nimport mailbox\nimport mailcap\nimport markupbase\nimport math\nimport md5\nimport mhlib\nimport mimetools\nimport mimetypes\n\nimport modulefinder\nimport multifile\nimport mutex\nimport netrc\nimport new\nimport nntplib\nimport ntpath\nimport nturl2path\nimport opcode\nimport optparse\nimport os2emxpath\nimport pdb\nimport pickle\nimport pickletools\nimport pipes\nimport pkgutil\n\nimport popen2\nimport poplib\n\nimport posixpath\nimport pprint\nimport profile\nimport pstats\n\n\nimport pyclbr\nimport pydoc\nimport quopri\nimport re\nimport repr\n\nimport rfc822\n\nimport robotparser\n\nimport sched\nimport sets\nimport sgmllib\nimport sha\nimport shelve\nimport shlex\nimport shutil\nimport site\n\nimport smtplib\nimport sndhdr\nimport socket\n\n\n\n\nimport stat\nimport statvfs\nimport string\nimport stringold\nimport stringprep\nimport struct\n\nimport sunau\nimport sunaudio\nimport symbol\n\nimport sys\nimport tabnanny\nimport tarfile\nimport telnetlib\nimport tempfile\nimport textwrap\n\nimport time\nimport timeit\nimport toaiff\nimport token\nimport tokenize\nimport trace\nimport traceback\n\nimport types\nimport unittest\nimport urllib\nimport urllib2\nimport urlparse\n\nimport uu\nimport uuid\nimport warnings\nimport wave\nimport weakref\n\nimport whichdb\nimport xdrlib\nimport xml.parsers.expat\nimport xml.dom\nimport xml.sax\n\nimport xmlrpclib\nimport zipfile\nimport zlib\n\n\n\nimport neo_cs\nimport neo_util\nimport webob\nimport wsgiref.handlers\n\n\nfrom google.appengine.api import datastore\nfrom google.appengine.api import files\nfrom google.appengine.api import images\nfrom google.appengine.api import mail\nfrom google.appengine.api import memcache\nfrom google.appengine.api import runtime\nfrom google.appengine.api import taskqueue\nfrom google.appengine.api import urlfetch\nfrom google.appengine.api import users\n\n\nfrom google.appengine.ext import bulkload\nfrom google.appengine.ext import db\nfrom google.appengine.ext import gql\nfrom google.appengine.ext import search\nfrom google.appengine.ext import webapp\n\n\nfrom google.appengine.runtime import apiproxy\n\nif __name__ == '__main__':\n pass\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def os_urandom_replacement(n):\n raise NotImplementedError", "metadata": "root.os_urandom_replacement", "header": "['module', '___EOS___']", "index": 38 } ]

[ { "span": "import BaseHTTPServer", "start_line": 49, "start_column": 0, "end_line": 49, "end_column": 21 }, { "span": "import Bastion", "start_line": 50, "start_column": 0, "end_line": 50, "end_column": 14 }, { "span": "import CGIHTTPServer", "start_line": 51, "start_column": 0, "end_line": 51, "end_column": 20 }, { "span": "import ConfigParser", "start_line": 52, "start_column": 0, "end_line": 52, "end_column": 19 }, { "span": "import Cookie", "start_line": 53, "start_column": 0, "end_line": 53, "end_column": 13 }, { "span": "import DocXMLRPCServer", "start_line": 54, "start_column": 0, "end_line": 54, "end_column": 22 }, { "span": "import HTMLParser", "start_line": 55, "start_column": 0, "end_line": 55, "end_column": 17 }, { "span": "import MimeWriter", "start_line": 56, "start_column": 0, "end_line": 56, "end_column": 17 }, { "span": "import Queue", "start_line": 57, "start_column": 0, "end_line": 57, "end_column": 12 }, { "span": "import SimpleHTTPServer", "start_line": 58, "start_column": 0, "end_line": 58, "end_column": 23 }, { "span": "import SimpleXMLRPCServer", "start_line": 59, "start_column": 0, "end_line": 59, "end_column": 25 }, { "span": "import SocketServer", "start_line": 60, "start_column": 0, "end_line": 60, "end_column": 19 }, { "span": "import StringIO", "start_line": 61, "start_column": 0, "end_line": 61, "end_column": 15 }, { "span": "import UserDict", "start_line": 62, "start_column": 0, "end_line": 62, "end_column": 15 }, { "span": "import UserList", "start_line": 63, "start_column": 0, "end_line": 63, "end_column": 15 }, { "span": "import UserString", "start_line": 64, "start_column": 0, "end_line": 64, "end_column": 17 }, { "span": "import aifc", "start_line": 65, "start_column": 0, "end_line": 65, "end_column": 11 }, { "span": "import anydbm", "start_line": 66, "start_column": 0, "end_line": 66, "end_column": 13 }, { "span": "import atexit", "start_line": 69, "start_column": 0, "end_line": 69, "end_column": 13 }, { "span": "import audiodev", "start_line": 70, "start_column": 0, "end_line": 70, "end_column": 15 }, { "span": "import base64", "start_line": 71, "start_column": 0, "end_line": 71, "end_column": 13 }, { "span": "import bdb", "start_line": 72, "start_column": 0, "end_line": 72, "end_column": 10 }, { "span": "import binhex", "start_line": 73, "start_column": 0, "end_line": 73, "end_column": 13 }, { "span": "import bisect", "start_line": 74, "start_column": 0, "end_line": 74, "end_column": 13 }, { "span": "import bz2", "start_line": 75, "start_column": 0, "end_line": 75, "end_column": 10 }, { "span": "import calendar", "start_line": 77, "start_column": 0, "end_line": 77, "end_column": 15 }, { "span": "import cgi", "start_line": 78, "start_column": 0, "end_line": 78, "end_column": 10 }, { "span": "import cgitb", "start_line": 79, "start_column": 0, "end_line": 79, "end_column": 12 }, { "span": "import chunk", "start_line": 80, "start_column": 0, "end_line": 80, "end_column": 12 }, { "span": "import cmd", "start_line": 81, "start_column": 0, "end_line": 81, "end_column": 10 }, { "span": "import code", "start_line": 82, "start_column": 0, "end_line": 82, "end_column": 11 }, { "span": "import codecs", "start_line": 83, "start_column": 0, "end_line": 83, "end_column": 13 }, { "span": "import codeop", "start_line": 84, "start_column": 0, "end_line": 84, "end_column": 13 }, { "span": "import colorsys", "start_line": 85, "start_column": 0, "end_line": 85, "end_column": 15 }, { "span": "import commands", "start_line": 86, "start_column": 0, "end_line": 86, "end_column": 15 }, { "span": "import cookielib", "start_line": 89, "start_column": 0, "end_line": 89, "end_column": 16 }, { "span": "import copy", "start_line": 90, "start_column": 0, "end_line": 90, "end_column": 11 }, { "span": "import copy_reg", "start_line": 91, "start_column": 0, "end_line": 91, "end_column": 15 }, { "span": "import csv", "start_line": 92, "start_column": 0, "end_line": 92, "end_column": 10 }, { "span": "import datetime", "start_line": 93, "start_column": 0, "end_line": 93, "end_column": 15 }, { "span": "import difflib", "start_line": 96, "start_column": 0, "end_line": 96, "end_column": 14 }, { "span": "import dircache", "start_line": 97, "start_column": 0, "end_line": 97, "end_column": 15 }, { "span": "import dis", "start_line": 98, "start_column": 0, "end_line": 98, "end_column": 10 }, { "span": "import doctest", "start_line": 99, "start_column": 0, "end_line": 99, "end_column": 14 }, { "span": "import dumbdbm", "start_line": 100, "start_column": 0, "end_line": 100, "end_column": 14 }, { "span": "import filecmp", "start_line": 101, "start_column": 0, "end_line": 101, "end_column": 14 }, { "span": "import fileinput", "start_line": 102, "start_column": 0, "end_line": 102, "end_column": 16 }, { "span": "import fnmatch", "start_line": 103, "start_column": 0, "end_line": 103, "end_column": 14 }, { "span": "import formatter", "start_line": 104, "start_column": 0, "end_line": 104, "end_column": 16 }, { "span": "import fpformat", "start_line": 105, "start_column": 0, "end_line": 105, "end_column": 15 }, { "span": "import ftplib", "start_line": 106, "start_column": 0, "end_line": 106, "end_column": 13 }, { "span": "import getopt", "start_line": 108, "start_column": 0, "end_line": 108, "end_column": 13 }, { "span": "import getpass", "start_line": 109, "start_column": 0, "end_line": 109, "end_column": 14 }, { "span": "import gettext", "start_line": 110, "start_column": 0, "end_line": 110, "end_column": 14 }, { "span": "import glob", "start_line": 111, "start_column": 0, "end_line": 111, "end_column": 11 }, { "span": "import gzip", "start_line": 113, "start_column": 0, "end_line": 113, "end_column": 11 }, { "span": "import heapq", "start_line": 115, "start_column": 0, "end_line": 115, "end_column": 12 }, { "span": "import hmac", "start_line": 116, "start_column": 0, "end_line": 116, "end_column": 11 }, { "span": "import htmlentitydefs", "start_line": 117, "start_column": 0, 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"end_column": 14 }, { "span": "import sndhdr", "start_line": 186, "start_column": 0, "end_line": 186, "end_column": 13 }, { "span": "import socket", "start_line": 187, "start_column": 0, "end_line": 187, "end_column": 13 }, { "span": "import stat", "start_line": 192, "start_column": 0, "end_line": 192, "end_column": 11 }, { "span": "import statvfs", "start_line": 193, "start_column": 0, "end_line": 193, "end_column": 14 }, { "span": "import string", "start_line": 194, "start_column": 0, "end_line": 194, "end_column": 13 }, { "span": "import stringold", "start_line": 195, "start_column": 0, "end_line": 195, "end_column": 16 }, { "span": "import stringprep", "start_line": 196, "start_column": 0, "end_line": 196, "end_column": 17 }, { "span": "import struct", "start_line": 197, "start_column": 0, "end_line": 197, "end_column": 13 }, { "span": "import sunau", "start_line": 199, "start_column": 0, "end_line": 199, "end_column": 12 }, { "span": "import sunaudio", "start_line": 200, 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toaiff", "start_line": 212, "start_column": 0, "end_line": 212, "end_column": 13 }, { "span": "import token", "start_line": 213, "start_column": 0, "end_line": 213, "end_column": 12 }, { "span": "import tokenize", "start_line": 214, "start_column": 0, "end_line": 214, "end_column": 15 }, { "span": "import trace", "start_line": 215, "start_column": 0, "end_line": 215, "end_column": 12 }, { "span": "import traceback", "start_line": 216, "start_column": 0, "end_line": 216, "end_column": 16 }, { "span": "import types", "start_line": 218, "start_column": 0, "end_line": 218, "end_column": 12 }, { "span": "import unittest", "start_line": 219, "start_column": 0, "end_line": 219, "end_column": 15 }, { "span": "import urllib", "start_line": 220, "start_column": 0, "end_line": 220, "end_column": 13 }, { "span": "import urllib2", "start_line": 221, "start_column": 0, "end_line": 221, "end_column": 14 }, { "span": "import urlparse", "start_line": 222, "start_column": 0, "end_line": 222, "end_column": 15 }, { "span": "import uu", "start_line": 224, "start_column": 0, "end_line": 224, "end_column": 9 }, { "span": "import uuid", "start_line": 225, "start_column": 0, "end_line": 225, "end_column": 11 }, { "span": "import warnings", "start_line": 226, "start_column": 0, "end_line": 226, "end_column": 15 }, { "span": "import wave", "start_line": 227, "start_column": 0, "end_line": 227, "end_column": 11 }, { "span": "import weakref", "start_line": 228, "start_column": 0, "end_line": 228, "end_column": 14 }, { "span": "import whichdb", "start_line": 230, "start_column": 0, "end_line": 230, "end_column": 14 }, { "span": "import xdrlib", "start_line": 231, "start_column": 0, "end_line": 231, "end_column": 13 }, { "span": "import xml.parsers.expat", "start_line": 232, "start_column": 0, "end_line": 232, "end_column": 24 }, { "span": "import xml.dom", "start_line": 233, "start_column": 0, "end_line": 233, "end_column": 14 }, { "span": "import xml.sax", "start_line": 234, "start_column": 0, "end_line": 234, "end_column": 14 }, { "span": "import xmlrpclib", "start_line": 236, "start_column": 0, "end_line": 236, "end_column": 16 }, { "span": "import zipfile", "start_line": 237, "start_column": 0, "end_line": 237, "end_column": 14 }, { "span": "import zlib", "start_line": 238, "start_column": 0, "end_line": 238, "end_column": 11 }, { "span": "import neo_cs", "start_line": 242, "start_column": 0, "end_line": 242, "end_column": 13 }, { "span": "import neo_util", "start_line": 243, "start_column": 0, "end_line": 243, "end_column": 15 }, { "span": "import webob", "start_line": 244, "start_column": 0, "end_line": 244, "end_column": 12 }, { "span": "import wsgiref.handlers", "start_line": 245, "start_column": 0, "end_line": 245, "end_column": 23 }, { "span": "from google.appengine.api import datastore", "start_line": 248, "start_column": 0, "end_line": 248, "end_column": 42 }, { "span": "from google.appengine.api import files", "start_line": 249, "start_column": 0, "end_line": 249, "end_column": 38 }, { "span": "from google.appengine.api import images", "start_line": 250, "start_column": 0, "end_line": 250, "end_column": 39 }, { "span": "from google.appengine.api import mail", "start_line": 251, "start_column": 0, "end_line": 251, "end_column": 37 }, { "span": "from google.appengine.api import memcache", "start_line": 252, "start_column": 0, "end_line": 252, "end_column": 41 }, { "span": "from google.appengine.api import runtime", "start_line": 253, "start_column": 0, "end_line": 253, "end_column": 40 }, { "span": "from google.appengine.api import taskqueue", "start_line": 254, "start_column": 0, "end_line": 254, "end_column": 42 }, { "span": "from google.appengine.api import urlfetch", "start_line": 255, "start_column": 0, "end_line": 255, "end_column": 41 }, { "span": "from google.appengine.api import users", "start_line": 256, "start_column": 0, "end_line": 256, "end_column": 38 }, { "span": "from google.appengine.ext import bulkload", "start_line": 259, "start_column": 0, "end_line": 259, "end_column": 41 }, { "span": "from google.appengine.ext import db", "start_line": 260, "start_column": 0, "end_line": 260, "end_column": 35 }, { "span": "from google.appengine.ext import gql", "start_line": 261, "start_column": 0, "end_line": 261, "end_column": 36 }, { "span": "from google.appengine.ext import search", "start_line": 262, "start_column": 0, "end_line": 262, "end_column": 39 }, { "span": "from google.appengine.ext import webapp", "start_line": 263, "start_column": 0, "end_line": 263, "end_column": 39 }, { "span": "from google.appengine.runtime import apiproxy", "start_line": 266, "start_column": 0, "end_line": 266, "end_column": 45 } ]

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[ { "content": " def _testExternal(self, moduleName, pyFiles):\n dirPath = self._createTempDir()\n pycFiles = set(pyFile + 'c' for pyFile in pyFiles)\n for relPath in pyFiles:\n path = os.path.join(dirPath, relPath)\n mkdir_p(os.path.dirname(path))\n with open(path, 'w') as f:\n f.write('pass\\n')\n sys.path.append(dirPath)\n try:\n userScript = importlib.import_module(moduleName)\n try:\n self._test(userScript.__name__, expectedContents=pycFiles)\n finally:\n del userScript\n del sys.modules[moduleName]\n self.assertFalse(moduleName in sys.modules)\n finally:\n sys.path.remove(dirPath)", "metadata": "root.ResourceTest._testExternal", "header": "['class', 'ResourceTest', '(', 'ToilTest', ')', ':', '___EOS___']", "index": 50 } ]

[ { "span": "self.assertFalse(moduleName in sys.modules)", "start_line": 66, "start_column": 12, "end_line": 66, "end_column": 55 } ]

[]

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[ { "content": " def\tprepare_byline(self, obj):\n try:\n \t return \"%s %s\" % (obj.byline.first_name, obj.byline.last_name)\n except:\n return None", "metadata": "root.EntryIndex.prepare_byline", "header": "['class', 'EntryIndex', '(', 'indexes', '.', 'SearchIndex', ')', ':', '___EOS___']", "index": 29 }, { "content": " def\tprepare_byline_exact(self, obj):\n try:\n \t return \"%s %s\" % (obj.byline.first_name, obj.byline.last_name)\n except:\n return None", "metadata": "root.EntryIndex.prepare_byline_exact", "header": "['class', 'EntryIndex', '(', 'indexes', '.', 'SearchIndex', ')', ':', '___EOS___']", "index": 35 } ]

[ { "span": "except:", "start_line": 32, "start_column": 8, "end_line": 32, "end_column": 15 }, { "span": "except:", "start_line": 38, "start_column": 8, "end_line": 38, "end_column": 15 } ]

[]

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[ { "content": " def testGetLocalProvides(self):\n db = self.openDatabase()\n baz = self.addDbComponent(db, 'baz:run', '1', '',\n provides=parseDep('trove:foo:run'))\n foo2 = self.addDbComponent(db, 'foo:run', '2', '',\n provides=parseDep('trove:foo:run'),\n requires=parseDep('trove:baz:run'))\n foo1 = self.addDbComponent(db, 'foo:run', '1', '',\n provides=parseDep('trove:foo:run'),\n requires=parseDep('trove:baz:run'))\n bar = self.addDbComponent(db, 'bar:run', '1', '',\n provides=parseDep('trove:bar:run'),\n requires=parseDep('trove:foo:run'))\n bam = self.addDbComponent(db, 'bam:run', '1', '',\n provides=parseDep('trove:bam:run'),\n requires=parseDep('trove:foo:run'))\n depSet = parseDep('trove:bam:run trove:bar:run')\n sols = db.getTrovesWithProvides([depSet], True)\n assert(sols[depSet] == [[bam.getNameVersionFlavor()],\n [bar.getNameVersionFlavor()]])", "metadata": "root.DepTableTestWithHelper.testGetLocalProvides", "header": "['class', 'DepTableTestWithHelper', '(', 'rephelp', '.', 'RepositoryHelper', ')', ':', '___EOS___']", "index": 277 } ]

[ { "span": "baz ", "start_line": 279, "start_column": 8, "end_line": 279, "end_column": 11 }, { "span": "foo2 ", "start_line": 281, "start_column": 8, "end_line": 281, "end_column": 12 }, { "span": "foo1 ", "start_line": 284, "start_column": 8, "end_line": 284, "end_column": 12 } ]

[]

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[ { "content": " def test_get_all_imports(self):\n imports = pipreqs.get_all_imports(self.project)\n self.assertEqual(len(imports), 13)\n for item in imports:\n self.assertTrue(\n item.lower() in self.modules, \"Import is missing: \" + item)\n self.assertFalse(\"time\" in imports)\n self.assertFalse(\"logging\" in imports)\n self.assertFalse(\"curses\" in imports)\n self.assertFalse(\"__future__\" in imports)\n self.assertFalse(\"django\" in imports)\n self.assertFalse(\"models\" in imports)", "metadata": "root.TestPipreqs.test_get_all_imports", "header": "['class', 'TestPipreqs', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 33 }, { "content": " def test_deduplicate_dependencies(self):\n imports = pipreqs.get_all_imports(self.project_with_duplicated_deps)\n pkgs = pipreqs.get_pkg_names(imports)\n self.assertEqual(len(pkgs), 1)\n self.assertTrue(\"pymongo\" in pkgs)", "metadata": "root.TestPipreqs.test_deduplicate_dependencies", "header": "['class', 'TestPipreqs', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 46 }, { "content": " def test_get_use_local_only(self):\n \"\"\"\n Test without checking PyPI, check to see if names of local imports matches what we expect\n\n - Note even though pyflakes isn't in requirements.txt,\n It's added to locals since it is a development dependency for testing\n \"\"\"\n # should find only docopt and requests\n imports_with_info = pipreqs.get_import_local(self.modules)\n for item in imports_with_info:\n self.assertTrue(item['name'].lower() in self.local)", "metadata": "root.TestPipreqs.test_get_use_local_only", "header": "['class', 'TestPipreqs', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 71 }, { "content": " def test_init(self):\n \"\"\"\n Test that all modules we will test upon, are in requirements file\n \"\"\"\n pipreqs.init({'<path>': self.project, '--savepath': None,\n '--use-local': None, '--force': True, '--proxy':None, '--pypi-server':None})\n assert os.path.exists(self.requirements_path) == 1\n with open(self.requirements_path, \"r\") as f:\n data = f.read().lower()\n for item in self.modules[:-3]:\n self.assertTrue(item.lower() in data)", "metadata": "root.TestPipreqs.test_init", "header": "['class', 'TestPipreqs', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 83 }, { "content": " def test_init_local_only(self):\n \"\"\"\n Test that items listed in requirements.text are the same as locals expected\n \"\"\"\n pipreqs.init({'<path>': self.project, '--savepath': None,\n '--use-local': True, '--force': True, '--proxy':None, '--pypi-server':None})\n assert os.path.exists(self.requirements_path) == 1\n with open(self.requirements_path, \"r\") as f:\n data = f.readlines()\n for item in data:\n item = item.strip().split(\" == \")\n self.assertTrue(item[0].lower() in self.local)", "metadata": "root.TestPipreqs.test_init_local_only", "header": "['class', 'TestPipreqs', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 95 }, { "content": " def test_init_savepath(self):\n \"\"\"\n Test that we can save requiremnts.tt correctly to a different path\n \"\"\"\n pipreqs.init({'<path>': self.project, '--savepath':\n self.alt_requirement_path, '--use-local': None, '--proxy':None, '--pypi-server':None})\n assert os.path.exists(self.alt_requirement_path) == 1\n with open(self.alt_requirement_path, \"r\") as f:\n data = f.read().lower()\n for item in self.modules[:-3]:\n self.assertTrue(item.lower() in data)\n for item in self.modules2:\n self.assertTrue(item.lower() in data)", "metadata": "root.TestPipreqs.test_init_savepath", "header": "['class', 'TestPipreqs', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 108 }, { "content": " def test_ignored_directory(self):\n \"\"\"\n Test --ignore parameter\n \"\"\"\n pipreqs.init(\n {'<path>': self.project_with_ignore_directory, '--savepath': None,\n '--use-local': None, '--force': True,\n '--proxy':None,\n '--pypi-server':None,\n '--ignore':'.ignored_dir,.ignore_second'\n }\n )\n with open(os.path.join(self.project_with_ignore_directory, \"requirements.txt\"), \"r\") as f:\n data = f.read().lower()\n for item in ['click', 'getpass']:\n self.assertFalse(item.lower() in data)", "metadata": "root.TestPipreqs.test_ignored_directory", "header": "['class', 'TestPipreqs', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 154 } ]

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[ { "content": "import asp.jit.asp_module as asp_module\nimport numpy as np\nfrom em import *\nimport pickle\nimport sys\n\nparam_type_map = {\n 'num_blocks_estep': ('cardinal','variant'),\n 'num_threads_estep': ('cardinal','variant'),\n 'num_threads_mstep': ('cardinal','variant'),\n 'num_event_blocks': ('cardinal','variant'),\n 'max_num_dimensions': ('cardinal','variant'),\n 'max_num_components': ('cardinal','variant'),\n 'max_num_dimensions_covar_v3': ('cardinal','variant'),\n 'max_num_components_covar_v3': ('cardinal','variant'),\n 'diag_only': ('binary','variant'),\n 'max_iters': ('cardinal','variant'),\n 'min_iters': ('cardinal','variant'),\n 'covar_version_name': ('nominal','variant'),\n 'supports_32b_floating_point_atomics': ('nominal','machine'),\n 'max_xy_grid_dim': ('cardinal','machine'),\n 'max_threads_per_block': ('cardinal','machine'),\n 'max_shared_memory_capacity_per_SM': ('cardinal','machine')\n}\n\nif __name__ == '__main__': \n ifile_name = sys.argv[1]\n ofile_name = sys.argv[2]\n func_name = sys.argv[3]\n device_id = sys.argv[4]\n gmm = GMM(1,1)\n mod = gmm.get_asp_mod()\n mod.restore_method_timings(func_name,ifile_name)\n var_names = mod.compiled_methods[func_name].v_id_list\n param_names = mod.compiled_methods[func_name].param_names\n var_times = mod.compiled_methods[func_name].database.variant_times\n f = file(ofile_name, 'a')\n f.write(\"Heading, Function Name, Device Name, Input Params,,,Variant Params\"+\",\"*len(param_names)+\"Time\\n\")\n f.write(\"Name,function,device,M,D,N,%s,Time\\n\" % ','.join(param_names))\n f.write(\"Type,nominal,nominal,cardinal,cardinal,cardinal,%s,real\\n\" % \n ','.join([param_type_map.get(n,'unknown')[0] for n in param_names]))\n f.write(\"Prefix,problem,machine,problem,problem,problem,%s,performance\\n\" % \n ','.join([param_type_map.get(n,'unknown')[1] for n in param_names]))\n for size, times in var_times.items():\n for name in var_names:\n time = times[name]\n f.write(\",%s,%s,%s,%s,%s\\n\" % ( func_name, \n device_id, \n ','.join([str(p) for p in size[1:]]),\n ','.join(name.split('_')[1:]),\n time ) )\n f.close()\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import asp.jit.asp_module as asp_module", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 39 }, { "span": "import numpy as np", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 18 }, { "span": "import pickle", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 13 } ]

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[ { "content": "\"\"\"Metadata for CVSGit about a pair of CVS and Git repositories.\"\"\"\n\nimport os.path\nimport re\nimport sqlite3\n\nfrom cvsgit.changeset import Change, ChangeSet\nfrom cvsgit.i18n import _\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class MetaDb(object):\n \"\"\"Database of CVS revisions (changes) and combined changesets.\n\n The database contains revisions from the CVS repository that are\n pending or already grouped into changesets and a mark indicating\n whether a changeset was already processed. For Git, the mark is\n the SHA1 commit hash. Unprocessed changesets have the mark None.\n \"\"\"\n\n\n \n dbh = property(get_dbh)\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.MetaDb", "header": "['module', '___EOS___']", "index": 9 }, { "content": " def __init__(self, filename):\n self.filename = filename\n self._dbh = None", "metadata": "root.MetaDb.__init__", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 18 }, { "content": " def get_dbh(self):\n if self._dbh is None:\n dbh = sqlite3.connect(self.filename)\n\n # http://web.utk.edu/~jplyon/sqlite/SQLite_optimization_FAQ.html\n dbh.execute(\"PRAGMA synchronous=OFF\")\n dbh.execute(\"PRAGMA count_changes=OFF\")\n #dbh.execute(\"PRAGMA cache_size=4000\")\n\n # This should also help, but causes the behaviour of the\n # ROLLBACK command to become undefined.\n dbh.execute(\"PRAGMA journal_mode=OFF\")\n\n # This helps for the temporary table which we create when\n # iterating over changes for changeset generation, but\n # bloats the process image a lot.\n #dbh.execute(\"PRAGMA temp_store=MEMORY\")\n\n # Create the table that contains changes pulled from CVS.\n #\n # 'changeset_id' is NULL until a change is associated with\n # a complete changeset.\n sql = 'CREATE TABLE IF NOT EXISTS change (' \\\n 'timestamp DATETIME NOT NULL, ' \\\n 'author VARCHAR NOT NULL, ' \\\n 'log TEXT NOT NULL, ' \\\n 'filestatus CHAR(1) NOT NULL, ' \\\n 'filename VARCHAR NOT NULL, ' \\\n 'revision VARCHAR NOT NULL, ' \\\n 'state VARCHAR(8) NOT NULL, ' \\\n 'mode CHAR(1) NOT NULL, ' \\\n 'changeset_id INTEGER, ' \\\n 'PRIMARY KEY (filename, revision))'\n dbh.execute(sql)\n sql = 'CREATE INDEX IF NOT EXISTS change__changeset_id ' \\\n 'ON change (changeset_id)'\n dbh.execute(sql)\n dbh.execute(\"\"\"\n CREATE INDEX IF NOT EXISTS change__timestamp\n ON change (timestamp)\"\"\")\n\n # Create the table that defines the attributes of complete\n # changesets. 'id' will be referenced by one or more rows\n # in the 'change' table.\n sql = 'CREATE TABLE IF NOT EXISTS changeset (' \\\n 'id INTEGER PRIMARY KEY, ' \\\n 'start_time DATETIME NOT NULL, ' \\\n 'end_time DATETIME NOT NULL, ' \\\n 'mark VARCHAR)'\n dbh.execute(sql)\n sql = 'CREATE UNIQUE INDEX IF NOT EXISTS ' \\\n 'changeset__id__start_time__mark ' \\\n 'ON changeset (id, start_time, mark)'\n dbh.execute(sql)\n\n # Create the table that stores stat() information for all\n # paths in the CVS repository. This allows the CVS change\n # scanner to skip unmodified RCS files and directories.\n dbh.execute(\"\"\"\n CREATE TABLE IF NOT EXISTS statcache (\n path VARCHAR PRIMARY KEY,\n mtime INTEGER NOT NULL,\n size INTEGER NOT NULL)\"\"\")\n # With this index, I haven't observed any speed gain.\n #dbh.execute(\"\"\"\n # CREATE INDEX IF NOT EXISTS statcache_index\n # ON statcache (path, mtime, size)\"\"\")\n\n self._dbh = dbh\n return self._dbh", "metadata": "root.MetaDb.get_dbh", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 22 }, { "content": " def load_statcache(self):\n \"\"\"Load the complete stat() cache and return it as a dictionary\n of the form {path:(mtime, size)}.\n \"\"\"\n sql = 'SELECT path, mtime, size FROM statcache'\n statcache = {}\n for row in self.dbh.execute(sql):\n statcache[row[0]] = row[1:]\n return statcache", "metadata": "root.MetaDb.load_statcache", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 95 }, { "content": " def update_statcache(self, statcache):\n \"\"\"'statcache' is a dictionary of {path:(mtime, size)} to insert\n into or update in the meta database's stat() cache.\n \"\"\"\n sql = 'INSERT OR REPLACE INTO statcache ' \\\n '(path, mtime, size) VALUES (?,?,?)'\n for path in statcache.keys():\n values = (path,) + statcache[path]\n self.dbh.execute(sql, values)", "metadata": "root.MetaDb.update_statcache", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 105 }, { "content": " def add_change(self, change):\n \"\"\"Insert a single file change into the database.\n\n If a record for the specified file and revision exists it is\n assumed to be identical and the change will be ignored.\n\n Note that multiple updates to the database may be grouped into\n a larger transaction for performance, but the caller can use\n commit() to ensure that the changes get flushed to disk.\n \"\"\"\n self.dbh.execute(\"\"\"\n INSERT OR IGNORE INTO change\n (timestamp, author, log, filestatus, filename,\n revision, state, mode)\n VALUES (?,?,?,?,?,?,?,?)\"\"\",\n (change.timestamp, change.author, change.log,\n change.filestatus, change.filename, change.revision,\n change.state, change.mode,))", "metadata": "root.MetaDb.add_change", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 115 }, { "content": " def add_changeset(self, changeset):\n \"\"\"Record the attributes of 'changeset' and mark the\n referenced changes as belonging to this changeset.\n\n Associating changes with a changeset can be considered an\n atomic operation from the caller's perspective.\n \"\"\"\n id = self.dbh.execute(\"\"\"\n INSERT INTO changeset (start_time, end_time) VALUES (?,?)\n \"\"\", (changeset.start_time, changeset.end_time,)).lastrowid\n try:\n self.dbh.executemany(\"\"\"\n UPDATE change SET changeset_id=%d\n WHERE filename=? AND revision=?\n \"\"\" % id, map(lambda c: (c.filename, c.revision),\n changeset.changes))\n except:\n self.dbh.execute(\"\"\"\n UPDATE change SET changeset_id=NULL\n WHERE changeset_id=%dfilename=? AND revision=?\n \"\"\" % id)\n raise", "metadata": "root.MetaDb.add_changeset", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 134 }, { "content": " def mark_changeset(self, id, mark):\n \"\"\"Mark 'changeset' as having been integrated.\n \"\"\"\n assert(id != None)\n sql = 'UPDATE changeset SET mark=? WHERE id=?'\n self.dbh.execute(sql, (mark, id,))\n self.dbh.commit()", "metadata": "root.MetaDb.mark_changeset", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 157 }, { "content": " def begin_transaction(self):\n \"\"\"Starts a new transaction (disables autocommit).\n \"\"\"\n self.dbh.execute('BEGIN TRANSACTION')", "metadata": "root.MetaDb.begin_transaction", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 165 }, { "content": " def commit(self):\n \"\"\"Commits the current transaction.\n \"\"\"\n self.dbh.commit()", "metadata": "root.MetaDb.commit", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 170 }, { "content": " def end_transaction(self):\n \"\"\"Ends a new transaction (enables autocommit).\n \"\"\"\n self.dbh.execute('END TRANSACTION')", "metadata": "root.MetaDb.end_transaction", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 175 }, { "content": " def count_changes(self):\n \"\"\"Return the number of free changes (not bound in a changeset).\n \"\"\"\n return self.dbh.execute(\"\"\"\n SELECT COUNT(*)\n FROM change\n WHERE changeset_id IS NULL\"\"\").fetchone()[0]", "metadata": "root.MetaDb.count_changes", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 180 }, { "content": " def changes_by_timestamp(self, processed=None, reentrant=True):\n \"\"\"Yields a list of changes recorded in the database.\n\n The 'processed' keyword determines wheather changes which are\n already included in a changeset are to be included or not. If\n the value is neuter True nor False, all changes are included.\n \"\"\"\n if processed == True:\n where = 'changeset_id IS NOT NULL'\n elif processed == False:\n where = 'changeset_id IS NULL'\n else:\n where = '1'\n\n def mkchange(row):\n return Change(timestamp=row[0], author=row[1], log=row[2],\n filestatus=row[3], filename=row[4],\n revision=row[5], state=row[6], mode=row[7])\n\n if not reentrant:\n for row in self.dbh.execute(\"\"\"\n SELECT timestamp, author, log, filestatus, filename,\n revision, state, mode\n FROM change\n WHERE %s\n ORDER BY timestamp, filename, revision\"\"\" % where):\n yield(mkchange(row))\n return\n\n self.dbh.execute(\"\"\"\n CREATE TEMPORARY TABLE free_change AS\n SELECT timestamp, author, log, filestatus, filename,\n revision, state, mode\n FROM change\n LIMIT 0\"\"\")\n self.dbh.execute(\"\"\"\n CREATE INDEX free_change__timestamp\n ON free_change (timestamp)\"\"\")\n self.dbh.execute(\"\"\"\n CREATE INDEX free_change__filename__revision\n ON free_change (filename, revision)\"\"\")\n self.dbh.execute(\"\"\"\n INSERT INTO free_change\n SELECT timestamp, author, log, filestatus, filename,\n revision, state, mode\n FROM change\n WHERE %s\"\"\" % where)\n\n try:\n while True:\n rows = self.dbh.execute(\"\"\"\n SELECT timestamp, author, log, filestatus, filename,\n revision, state, mode\n FROM free_change\n ORDER BY timestamp\n LIMIT 1000\"\"\").fetchall()\n if len(rows) == 0:\n break\n for row in rows:\n change = mkchange(row)\n yield(change)\n self.dbh.execute(\"\"\"\n DELETE FROM free_change\n WHERE filename = ? AND revision = ?\"\"\",\n (change.filename, change.revision,))\n finally:\n self.dbh.execute('DROP TABLE IF EXISTS free_change')", "metadata": "root.MetaDb.changes_by_timestamp", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 188 }, { "content": " def count_changesets(self):\n \"\"\"Return the number of unmarked changesets (not imported).\n \"\"\"\n sql = 'SELECT COUNT(*) FROM changeset WHERE mark IS NULL'\n return self.dbh.execute(sql).fetchone()[0]", "metadata": "root.MetaDb.count_changesets", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 256 }, { "content": " def _select_changesets(self, where):\n where = where % {'changeset':'cs'}\n sql = \"\"\"\n SELECT cs.id, cs.start_time, cs.end_time, c.timestamp,\n c.author, c.log, c.filestatus, c.filename,\n c.revision, c.state, c.mode\n FROM changeset cs\n INNER JOIN change c ON c.changeset_id = cs.id\n WHERE %s\n ORDER BY cs.end_time, cs.id\"\"\" % where\n\n changeset = None\n for row in self.dbh.execute(sql):\n change = Change(timestamp=row[3],\n author=row[4],\n log=row[5],\n filestatus=row[6],\n filename=row[7],\n revision=row[8],\n state=row[9],\n mode=row[10])\n\n if changeset is None or changeset.id != row[0]:\n if changeset:\n yield(changeset)\n\n changeset = ChangeSet(change, id=row[0])\n changeset.provider = self\n changeset.start_time = row[1]\n changeset.end_time = row[2]\n else:\n changeset.changes.append(change)\n\n if changeset:\n yield(changeset)", "metadata": "root.MetaDb._select_changesets", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 262 }, { "content": " def head_changeset(self):\n \"\"\"Return the \"head\" changeset, the one with the highest value\n of 'id' ('mark' is ignored) or None if there is no changeset.\n \"\"\"\n where = '%(changeset)s.id IS MAX(%(changeset)s.id)'\n for cs in self._select_changesets(where):\n return cs", "metadata": "root.MetaDb.head_changeset", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 298 }, { "content": " def changesets_by_start_time(self):\n \"\"\"Yield a list of all unmarked changesets currently recorded\n in the database, ordered by their start time.\n \"\"\"\n\twhere = '%(changeset)s.mark IS NULL'\n return self._select_changesets(where)", "metadata": "root.MetaDb.changesets_by_start_time", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 306 }, { "content": " def all_authors(self):\n \"\"\"Return a list of all author login names.\n \"\"\"\n return map(lambda row: row[0], self.dbh.execute(\"\"\"\n SELECT DISTINCT(author) FROM change ORDER BY author\n \"\"\").fetchall())", "metadata": "root.MetaDb.all_authors", "header": "['class', 'MetaDb', '(', 'object', ')', ':', '___EOS___']", "index": 313 } ]

[ { "span": "import os.path", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 14 }, { "span": "import re", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 9 } ]

[]

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[ { "content": "# encoding: utf-8\n\"\"\"\nSee if we have curses.\n\"\"\"\n\n#-----------------------------------------------------------------------------\n# Copyright (C) 2008-2009 The IPython Development Team\n#\n# Distributed under the terms of the BSD License. The full license is in\n# the file COPYING, distributed as part of this software.\n#-----------------------------------------------------------------------------\n\n#-----------------------------------------------------------------------------\n# Imports\n#-----------------------------------------------------------------------------\n\n#-----------------------------------------------------------------------------\n# Code\n#-----------------------------------------------------------------------------\n\n# Curses and termios are Unix-only modules\ntry:\n import curses\n # We need termios as well, so if its import happens to raise, we bail on\n # using curses altogether.\n import termios\nexcept ImportError:\n use_curses = False\nelse:\n # Curses on Solaris may not be complete, so we can't use it there\n use_curses = hasattr(curses,'initscr')", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import termios", "start_line": 25, "start_column": 4, "end_line": 25, "end_column": 18 } ]

[]

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[ { "content": "import random\nimport os\nimport re\nimport numpy as np\nfrom sklearn.feature_extraction.text import CountVectorizer\nfrom sklearn import linear_model\nfrom sklearn import tree\nfrom sklearn import svm\n# PUT POLARITY DATASET PATH HERE\nPOLARITY_PATH = '/Users/marcotcr/phd/datasets/multi_domain_polarity/'\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def LoadDataset(dataset_name):\n if dataset_name.endswith('ng'):\n if dataset_name == '2ng':\n cats = ['alt.atheism', 'soc.religion.christian']\n class_names = ['Atheism', 'Christianity']\n if dataset_name == 'talkng':\n cats = ['talk.politics.guns', 'talk.politics.misc']\n class_names = ['Guns', 'PoliticalMisc']\n if dataset_name == '3ng':\n cats = ['comp.os.ms-windows.misc', 'comp.sys.ibm.pc.hardware', 'comp.windows.x']\n class_names = ['windows.misc', 'ibm.hardware', 'windows.x']\n newsgroups_train = fetch_20newsgroups(subset='train',categories=cats)\n newsgroups_test = fetch_20newsgroups(subset='test',categories=cats)\n train_data = newsgroups_train.data\n train_labels = newsgroups_train.target\n test_data = newsgroups_test.data\n test_labels = newsgroups_test.target\n return train_data, train_labels, test_data, test_labels, class_names\n if dataset_name.startswith('multi_polarity_'):\n name = dataset_name.split('_')[2]\n return LoadMultiDomainDataset(POLARITY_PATH + name)", "metadata": "root.LoadDataset", "header": "['module', '___EOS___']", "index": 10 }, { "content": "def LoadMultiDomainDataset(path_data, remove_bigrams=True):\n random.seed(1)\n pos = []\n neg = []\n def get_words(line, remove_bigrams=True):\n z = [tuple(x.split(':')) for x in re.findall('\\w*?:\\d', line)]\n if remove_bigrams:\n z = ' '.join([' '.join([x[0]] * int(x[1])) for x in z if '_' not in x[0]])\n else:\n z = ' '.join([' '.join([x[0]] * int(x[1])) for x in z])\n return z\n for line in open(os.path.join(path_data, 'negative.review')):\n neg.append(get_words(line, remove_bigrams))\n for line in open(os.path.join(path_data, 'positive.review')):\n pos.append(get_words(line, remove_bigrams))\n random.shuffle(pos)\n random.shuffle(neg)\n split_pos = int(len(pos) * .8)\n split_neg = int(len(neg) * .8)\n train_data = pos[:split_pos] + neg[:split_neg]\n test_data = pos[split_pos:] + neg[split_neg:]\n train_labels = [1] * len(pos[:split_pos]) + [0] * len(neg[:split_neg])\n test_labels = [1] * len(pos[split_pos:]) + [0] * len(neg[split_neg:])\n return train_data, np.array(train_labels), test_data, np.array(test_labels), ['neg', 'pos']", "metadata": "root.LoadMultiDomainDataset", "header": "['module', '___EOS___']", "index": 31 } ]

[ { "span": "from sklearn.feature_extraction.text import CountVectorizer", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 59 }, { "span": "from sklearn import linear_model", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 32 }, { "span": "from sklearn import tree", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 24 }, { "span": "from sklearn import svm", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 23 } ]

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[ { "content": " def test_get_by_user_with_user_permission(self):\n user = User.objects.create(username='john_doe')\n site = Site.objects.all()[0]\n channel = Channel.objects.create(\n name='Home',\n slug='home',\n site=site,\n user=user\n )\n permission = Permission.objects.create(user=user)\n permission.channel.add(channel)\n permission.save()\n\n result = Permission.get_by_user(user)\n\n self.assertTrue(site.pk in result['all_sites_id'])\n self.assertTrue(channel.pk in result['channels_id'])", "metadata": "root.PermissionModelTest.test_get_by_user_with_user_permission", "header": "['class', 'PermissionModelTest', '(', 'TestCase', ')', ':', '___EOS___']", "index": 30 }, { "content": " def test_get_by_user_with_group_permission(self):\n group = Group.objects.create(name='programmers')\n user = User.objects.create(username='john_doe')\n user.groups.add(group)\n\n site = Site.objects.all()[0]\n channel = Channel.objects.create(\n name='Home',\n slug='home',\n site=site,\n user=user\n )\n permission = PermissionGroup.objects.create(group=group)\n permission.channel.add(channel)\n permission.save()\n\n result = Permission.get_by_user(user)\n\n self.assertTrue(site.pk in result['all_sites_id'])\n self.assertTrue(channel.pk in result['channels_id'])", "metadata": "root.PermissionModelTest.test_get_by_user_with_group_permission", "header": "['class', 'PermissionModelTest', '(', 'TestCase', ')', ':', '___EOS___']", "index": 48 } ]

[ { "span": "self.assertTrue(site.pk in result['all_sites_id'])", "start_line": 45, "start_column": 8, "end_line": 45, "end_column": 58 }, { "span": "self.assertTrue(channel.pk in result['channels_id'])", "start_line": 46, "start_column": 8, "end_line": 46, "end_column": 60 }, { "span": "self.assertTrue(site.pk in result['all_sites_id'])", "start_line": 66, "start_column": 8, "end_line": 66, "end_column": 58 }, { "span": "self.assertTrue(channel.pk in result['channels_id'])", "start_line": 67, "start_column": 8, "end_line": 67, "end_column": 60 } ]

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[ { "content": "# util/compat.py\n# Copyright (C) 2005-2015 the SQLAlchemy authors and contributors\n# <see AUTHORS file>\n#\n# This module is part of SQLAlchemy and is released under\n# the MIT License: http://www.opensource.org/licenses/mit-license.php\n\n\"\"\"Handle Python version/platform incompatibilities.\"\"\"\n\nimport sys\n\ntry:\n import threading\nexcept ImportError:\n import dummy_threading as threading\n\npy33 = sys.version_info >= (3, 3)\npy32 = sys.version_info >= (3, 2)\npy3k = sys.version_info >= (3, 0)\npy2k = sys.version_info < (3, 0)\npy265 = sys.version_info >= (2, 6, 5)\njython = sys.platform.startswith('java')\npypy = hasattr(sys, 'pypy_version_info')\nwin32 = sys.platform.startswith('win')\ncpython = not pypy and not jython # TODO: something better for this ?\n\nimport collections\nnext = next\n\nif py3k:\n import pickle\nelse:\n try:\n import cPickle as pickle\n except ImportError:\n import pickle\n\n# work around http://bugs.python.org/issue2646\nif py265:\n safe_kwarg = lambda arg: arg\nelse:\n safe_kwarg = str\n\nArgSpec = collections.namedtuple(\"ArgSpec\",\n [\"args\", \"varargs\", \"keywords\", \"defaults\"])\n\nif py3k:\n import builtins\n\n from inspect import getfullargspec as inspect_getfullargspec\n from urllib.parse import (quote_plus, unquote_plus,\n parse_qsl, quote, unquote)\n import configparser\n from io import StringIO\n\n from io import BytesIO as byte_buffer\n\n\n string_types = str,\n binary_type = bytes\n text_type = str\n int_types = int,\n iterbytes = iter\n\n\n\n\n if py32:\n callable = callable\n else:\n\n\n from functools import reduce\n\n print_ = getattr(builtins, \"print\")\n\n import_ = getattr(builtins, '__import__')\n\n import itertools\n itertools_filterfalse = itertools.filterfalse\n itertools_filter = filter\n itertools_imap = map\n from itertools import zip_longest\n\n import base64\n\n\n\nelse:\n from inspect import getargspec as inspect_getfullargspec\n inspect_getargspec = inspect_getfullargspec\n from urllib import quote_plus, unquote_plus, quote, unquote\n from urlparse import parse_qsl\n import ConfigParser as configparser\n from StringIO import StringIO\n from cStringIO import StringIO as byte_buffer\n\n string_types = basestring,\n binary_type = str\n text_type = unicode\n int_types = int, long\n\n\n\n\n\n\n callable = callable\n cmp = cmp\n reduce = reduce\n\n import base64\n b64encode = base64.b64encode\n b64decode = base64.b64decode\n\n\n import itertools\n itertools_filterfalse = itertools.ifilterfalse\n itertools_filter = itertools.ifilter\n itertools_imap = itertools.imap\n from itertools import izip_longest as zip_longest\n\n\nimport time\nif win32 or jython:\n time_func = time.clock\nelse:\n time_func = time.time\n\nfrom collections import namedtuple\nfrom operator import attrgetter as dottedgetter\n\n\nif py3k:\n\nelse:\n exec(\"def reraise(tp, value, tb=None, cause=None):\\n\"\n \" raise tp, value, tb\\n\")\n\n\nif py3k:\n exec_ = getattr(builtins, 'exec')\nelse:\n\n\n\n\nfrom contextlib import contextmanager\n\ntry:\n from contextlib import nested\nexcept ImportError:\n # removed in py3k, credit to mitsuhiko for\n # workaround\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": " def inspect_getargspec(func):\n return ArgSpec(\n *inspect_getfullargspec(func)[0:4]\n )", "metadata": "root.inspect_getargspec", "header": "['module', '___EOS___']", "index": 57 }, { "content": " def u(s):\n return s", "metadata": "root.u", "header": "['module', '___EOS___']", "index": 68 }, { "content": " def ue(s):\n return s", "metadata": "root.ue", "header": "['module', '___EOS___']", "index": 71 }, { "content": " def b(s):\n return s.encode(\"latin-1\")", "metadata": "root.b", "header": "['module', '___EOS___']", "index": 74 }, { "content": " def callable(fn):\n return hasattr(fn, '__call__')", "metadata": "root.callable", "header": "['module', '___EOS___']", "index": 80 }, { "content": " def cmp(a, b):\n return (a > b) - (a < b)", "metadata": "root.cmp", "header": "['module', '___EOS___']", "index": 83 }, { "content": " def b64encode(x):\n return base64.b64encode(x).decode('ascii')", "metadata": "root.b64encode", "header": "['module', '___EOS___']", "index": 100 }, { "content": " def b64decode(x):\n return base64.b64decode(x.encode('ascii'))", "metadata": "root.b64decode", "header": "['module', '___EOS___']", "index": 103 }, { "content": " def iterbytes(buf):\n return (ord(byte) for byte in buf)", "metadata": "root.iterbytes", "header": "['module', '___EOS___']", "index": 120 }, { "content": " def u(s):\n # this differs from what six does, which doesn't support non-ASCII\n # strings - we only use u() with\n # literal source strings, and all our source files with non-ascii\n # in them (all are tests) are utf-8 encoded.\n return unicode(s, \"utf-8\")", "metadata": "root.u", "header": "['module', '___EOS___']", "index": 123 }, { "content": " def ue(s):\n return unicode(s, \"unicode_escape\")", "metadata": "root.ue", "header": "['module', '___EOS___']", "index": 130 }, { "content": " def b(s):\n return s", "metadata": "root.b", "header": "['module', '___EOS___']", "index": 133 }, { "content": " def import_(*args):\n if len(args) == 4:\n args = args[0:3] + ([str(arg) for arg in args[3]],)\n return __import__(*args)", "metadata": "root.import_", "header": "['module', '___EOS___']", "index": 136 }, { "content": " def print_(*args, **kwargs):\n fp = kwargs.pop(\"file\", sys.stdout)\n if fp is None:\n return\n for arg in enumerate(args):\n if not isinstance(arg, basestring):\n arg = str(arg)\n fp.write(arg)", "metadata": "root.print_", "header": "['module', '___EOS___']", "index": 149 }, { "content": " def reraise(tp, value, tb=None, cause=None):\n if cause is not None:\n value.__cause__ = cause\n if value.__traceback__ is not tb:\n raise value.with_traceback(tb)\n raise value", "metadata": "root.reraise", "header": "['module', '___EOS___']", "index": 176 }, { "content": " def raise_from_cause(exception, exc_info=None):\n if exc_info is None:\n exc_info = sys.exc_info()\n exc_type, exc_value, exc_tb = exc_info\n reraise(type(exception), exception, tb=exc_tb, cause=exc_value)", "metadata": "root.raise_from_cause", "header": "['module', '___EOS___']", "index": 183 }, { "content": " def raise_from_cause(exception, exc_info=None):\n # not as nice as that of Py3K, but at least preserves\n # the code line where the issue occurred\n if exc_info is None:\n exc_info = sys.exc_info()\n exc_type, exc_value, exc_tb = exc_info\n reraise(type(exception), exception, tb=exc_tb)", "metadata": "root.raise_from_cause", "header": "['module', '___EOS___']", "index": 192 }, { "content": " def exec_(func_text, globals_, lcl=None):\n if lcl is None:\n exec('exec func_text in globals_')\n else:\n exec('exec func_text in globals_, lcl')", "metadata": "root.exec_", "header": "['module', '___EOS___']", "index": 203 }, { "content": "def with_metaclass(meta, *bases):\n \"\"\"Create a base class with a metaclass.\n\n Drops the middle class upon creation.\n\n Source: http://lucumr.pocoo.org/2013/5/21/porting-to-python-3-redux/\n\n \"\"\"\n\n class metaclass(meta):\n __call__ = type.__call__\n __init__ = type.__init__\n\n def __new__(cls, name, this_bases, d):\n if this_bases is None:\n return type.__new__(cls, name, (), d)\n return meta(name, bases, d)\n return metaclass('temporary_class', None, {})", "metadata": "root.with_metaclass", "header": "['module', '___EOS___']", "index": 210 }, { "content": " @contextmanager\n def nested(*managers):\n exits = []\n vars = []\n exc = (None, None, None)\n try:\n for mgr in managers:\n exit = mgr.__exit__\n enter = mgr.__enter__\n vars.append(enter())\n exits.append(exit)\n yield vars\n except:\n exc = sys.exc_info()\n finally:\n while exits:\n exit = exits.pop()\n try:\n if exit(*exc):\n exc = (None, None, None)\n except:\n exc = sys.exc_info()\n if exc != (None, None, None):\n reraise(exc[0], exc[1], exc[2])", "metadata": "root.nested", "header": "['module', '___EOS___']", "index": 238 } ]

[ { "span": "import threading", "start_line": 12, "start_column": 4, "end_line": 12, "end_column": 20 }, { "span": "import dummy_threading as threading", "start_line": 14, "start_column": 4, "end_line": 14, "end_column": 39 }, { "span": "import pickle", "start_line": 30, "start_column": 4, "end_line": 30, "end_column": 17 }, { "span": "from urllib.parse import (quote_plus, unquote_plus,\n parse_qsl, quote, unquote)", "start_line": 50, "start_column": 4, "end_line": 51, "end_column": 56 }, { "span": "import configparser", "start_line": 52, "start_column": 4, "end_line": 52, "end_column": 23 }, { "span": "from io import StringIO", "start_line": 53, "start_column": 4, "end_line": 53, "end_column": 27 }, { "span": "from io import BytesIO as byte_buffer", "start_line": 55, "start_column": 4, "end_line": 55, "end_column": 41 }, { "span": "from itertools import zip_longest", "start_line": 96, "start_column": 4, "end_line": 96, "end_column": 37 }, { "span": "from collections import namedtuple", "start_line": 171, "start_column": 0, "end_line": 171, "end_column": 34 }, { "span": "from operator import attrgetter as dottedgetter", "start_line": 172, "start_column": 0, "end_line": 172, "end_column": 47 } ]

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[ { "content": "'''\nCreated on Nov 26, 2014\n\n@author: Yury Zhauniarovich <y.zhalnerovich{at}gmail.com>\n'''\nimport os, time\n\nfrom interfaces.adb_interface import AdbInterface\nfrom bboxcoverage import BBoxCoverage\nfrom running_strategies import IntentInvocationStrategy\n\nimport smtplib\nimport email.utils\nfrom email.mime.text import MIMEText\n\nAPK_DIR_SOURCES = [\"\", \"\"]\n\nSMTP_SERVER = 'smtp.gmail.com'\nSMTP_PORT = 587\nSENDER = \"\"\nPASSWORD = \"\"\nTO_EMAIL = \"\"\n\n\n\n\n\n\n\n\n#main part\nadb = AdbInterface()\ndevice = getExecutionDevice()\nif not device:\n exit(1)\n \nadb.setTargetSerial(device)\nbboxcoverage = BBoxCoverage()\n\nfor apk_dir_source in APK_DIR_SOURCES:\n print \"\\n\\nStarting experiment for directory: [%s]\" % apk_dir_source\n result_directories = getSubdirs(apk_dir_source)\n for directory in result_directories:\n apk_file = getInstrApkInFolder(directory)\n if apk_file:\n print \"Starting experiment for apk: [%s]\" % apk_file\n try:\n bboxcoverage.initAlreadyInstrApkEnv(pathToInstrApk=apk_file, resultsDir=directory)\n except:\n print \"Exception while initialization!\"\n continue\n try:\n bboxcoverage.installApkOnDevice()\n except:\n print \"Exception while installation apk on device!\"\n bboxcoverage.uninstallPackage()\n try:\n bboxcoverage.installApkOnDevice()\n except:\n continue\n \n package_name = bboxcoverage.getPackageName()\n params = {}\n params[\"strategy\"] = \"main_intents\"\n params[\"package_name\"] = package_name\n params[\"main_activity\"] = bboxcoverage.androidManifest.getMainActivity()\n \n try: \n bboxcoverage.startTesting()\n except:\n print \"Exception while startTesting!\"\n bboxcoverage.uninstallPackage()\n continue\n \n try:\n runMainIntentsStrategy(adb=adb, androidManifest=bboxcoverage.androidManifestFile, delay=10)\n except:\n print \"Exception while running strategy!\"\n bboxcoverage.uninstallPackage()\n continue\n \n try: \n bboxcoverage.stopTesting(\"main_intents\", paramsToWrite=params)\n except:\n print \"Exception while running strategy!\"\n bboxcoverage.uninstallPackage()\n continue\n \n time.sleep(3)\n bboxcoverage.uninstallPackage()\n time.sleep(5)\n \n sendMessage(\"[BBoxTester]\", \"Experiments done for directory [%s]!\" % apk_dir_source)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

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[ { "content": " def build_gui(self, container):\n width, height = 300, 300\n cm, im = self.fv.cm, self.fv.im\n\n tg = Viewers.ImageViewCanvas(logger=self.logger)\n tg.configure_window(200, 200)\n tg.enable_autozoom('on')\n tg.set_autocut_params('zscale')\n tg.enable_autocuts('override')\n tg.enable_auto_orient(True)\n tg.defer_redraw = False\n tg.set_bg(0.7, 0.7, 0.7)\n self.thumb_generator = tg\n\n sw = Widgets.ScrollArea()\n sw.add_callback('configure', self.thumbpane_resized_cb)\n\n # Create thumbnails pane\n vbox = Widgets.GridBox()\n vbox.set_margins(4, 4, 4, 4)\n vbox.set_column_spacing(14)\n self.w.thumbs = vbox\n\n sw.set_widget(vbox)\n self.w.thumbs_scroll = sw\n\n container.add_widget(sw, stretch=1)\n\n captions = (('Auto scroll', 'checkbutton', 'Clear', 'button'),)\n w, b = Widgets.build_info(captions)\n self.w.update(b)\n\n b.auto_scroll.set_tooltip(\n \"Scroll the thumbs window when new images arrive\")\n b.clear.set_tooltip(\"Remove all current thumbnails\")\n b.clear.add_callback('activated', lambda w: self.clear())\n auto_scroll = self.settings.get('auto_scroll', True)\n b.auto_scroll.set_state(auto_scroll)\n container.add_widget(w, stretch=0)\n\n self.gui_up = True", "metadata": "root.Thumbs.build_gui", "header": "['class', 'Thumbs', '(', 'GingaPlugin', '.', 'GlobalPlugin', ')', ':', '___EOS___']", "index": 77 }, { "content": " def add_image_cb(self, viewer, chname, image, image_info):\n if not self.gui_up:\n return False\n\n # image is flagged not to make a thumbnail?\n nothumb = image.get('nothumb', False)\n if nothumb:\n return\n\n idx = image.get('idx', None)\n # get image path\n path = image_info.path\n\n if path is not None:\n path = os.path.abspath(path)\n name = image_info.name\n\n thumbname = name\n self.logger.info(\"making thumb for %s\" % (thumbname))\n\n future = image_info.image_future\n\n # Is there a preference set to avoid making thumbnails?\n chinfo = self.fv.get_channelInfo(chname)\n prefs = chinfo.settings\n if not prefs.get('genthumb', False):\n return\n\n # Is this thumbnail already in the list?\n # NOTE: does not handle two separate images with the same path\n # in the same channel\n thumbkey = self.get_thumb_key(chname, name, path)\n with self.thmblock:\n if thumbkey in self.thumbDict:\n return\n\n # Get metadata for mouse-over tooltip\n header = image.get_header()\n metadata = {}\n for kwd in self.keywords:\n metadata[kwd] = header.get(kwd, 'N/A')\n metadata[self.settings.get('mouseover_name_key','NAME')] = name\n\n thumbpath = self.get_thumbpath(path)\n\n with self.thmblock:\n self.copy_attrs(chinfo.fitsimage)\n self.thumb_generator.set_image(image)\n imgwin = self.thumb_generator.get_image_as_widget()\n\n label_length = self.settings.get('label_length', None)\n label_cutoff = self.settings.get('label_cutoff', 'right')\n\n # Shorten thumbnail label, if requested\n if label_length is not None:\n thumbname = iohelper.shorten_name(thumbname, label_length,\n side=label_cutoff)\n\n self.insert_thumbnail(imgwin, thumbkey, thumbname, chname, name, path,\n thumbpath, metadata, future)", "metadata": "root.Thumbs.add_image_cb", "header": "['class', 'Thumbs', '(', 'GingaPlugin', '.', 'GlobalPlugin', ')', ':', '___EOS___']", "index": 129 } ]

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":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "return_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Get", " ", "metadata", " ", "for", " ", "mouse", "-", "over", " ", "tooltip_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "header_", "=_", "image_", "._", "get", "\\u", "header_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "metadata_", "=_", "{_", "}_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "for_", "kwd", "_", "in_", "self_", "._", "keywords_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "metadata_", "[_", "kwd", "_", "]_", "=_", "header_", "._", "get_", "(_", "kwd", "_", ",_", "'", "N", "/", "A", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "metadata_", "[_", "self_", "._", "settings_", "._", "get_", "(_", "'", "mouse", "over", "\\u", "name", "\\u", "key", "'_", ",_", "'", "NAME", "'_", ")_", "]_", "=_", "name_", "\\u\\u\\uNEWLINE\\u\\u\\u_", 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"'", "label", "\\u", "cuto", "ff", "'_", ",_", "'", "right", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Short", "en", " ", "thumbnail", " ", "label", ",", " ", "if", " ", "requested_", "\\u\\u\\uNL\\u\\u\\u_", "if_", "label", "\\u", "length_", "is_", "not_", "None_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "thumb", "name_", "=_", "io", "helper_", "._", "shorten", "\\u", "name_", "(_", "thumb", "name_", ",_", "label", "\\u", "length_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "side_", "=_", "label", "\\u", "cutoff_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "self_", "._", "insert", "\\u", "thumbnail_", "(_", "img", "win_", ",_", "thumb", "key_", ",_", "thumb", "name_", ",_", "chn", "ame_", ",_", "name_", ",_", "path_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "thumb", "path_", ",_", "metadata_", ",_", "future_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]

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[ { "content": " def test00_simple(self):\n \"\"\"Checking simple do/undo.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00_simple...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray', [3, 4], \"Another array\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that otherarray does not exist in the object tree\n self.assertTrue(\"/otherarray\" not in self.h5file)\n self.assertEqual(self.h5file._curaction, 0)\n self.assertEqual(self.h5file._curmark, 0)\n\n # Redo the operation\n self._do_reopen()\n self.h5file.redo()\n if common.verbose:\n print(\"Object tree after redo:\", self.h5file)\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/otherarray\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray.title, \"Another array\")\n self.assertEqual(self.h5file._curaction, 1)\n self.assertEqual(self.h5file._curmark, 0)", "metadata": "root.BasicTestCase.test00_simple", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 52 }, { "content": " def test01_twice(self):\n \"\"\"Checking do/undo (twice operations intertwined)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01_twice...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray', [3, 4], \"Another array\")\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Now undo the past operations\n self._do_reopen()\n self.h5file.undo()\n self.assertTrue(\"/otherarray\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertEqual(self.h5file._curaction, 0)\n self.assertEqual(self.h5file._curmark, 0)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/otherarray\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray2.read(), [4, 5])\n self.assertEqual(self.h5file.root.otherarray.title, \"Another array\")\n self.assertEqual(self.h5file.root.otherarray2.title, \"Another array 2\")\n self.assertEqual(self.h5file._curaction, 2)\n self.assertEqual(self.h5file._curmark, 0)", "metadata": "root.BasicTestCase.test01_twice", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 86 }, { "content": " def test02_twice2(self):\n \"\"\"Checking twice ops and two marks.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test02_twice2...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray', [3, 4], \"Another array\")\n\n # Put a mark\n self._do_reopen()\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n self.assertEqual(self.h5file._curaction, 3)\n self.assertEqual(self.h5file._curmark, 1)\n\n # Unwind just one mark\n self.h5file.undo()\n self.assertTrue(\"/otherarray\" in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertEqual(self.h5file._curaction, 2)\n self.assertEqual(self.h5file._curmark, 1)\n\n # Unwind another mark\n self.h5file.undo()\n self.assertEqual(self.h5file._curaction, 0)\n self.assertEqual(self.h5file._curmark, 0)\n self.assertTrue(\"/otherarray\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n\n # Redo until the next mark\n self.h5file.redo()\n self.assertTrue(\"/otherarray\" in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self._do_reopen()\n self.assertEqual(self.h5file._curaction, 2)\n self.assertEqual(self.h5file._curmark, 1)\n\n # Redo until the end\n self.h5file.redo()\n self.assertTrue(\"/otherarray\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray2.read(), [4, 5])\n self.assertEqual(self.h5file.root.otherarray.title, \"Another array\")\n self.assertEqual(self.h5file.root.otherarray2.title, \"Another array 2\")\n self.assertEqual(self.h5file._curaction, 3)\n self.assertEqual(self.h5file._curmark, 1)", "metadata": "root.BasicTestCase.test02_twice2", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 121 }, { "content": " def test03_6times3marks(self):\n \"\"\"Checking with six ops and three marks.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test03_6times3marks...\" %\n self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Put a mark\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n self.h5file.create_array('/', 'otherarray4', [6, 7], \"Another array 4\")\n\n # Put a mark\n self._do_reopen()\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray5', [7, 8], \"Another array 5\")\n self.h5file.create_array('/', 'otherarray6', [8, 9], \"Another array 6\")\n\n # Unwind just one mark\n self.h5file.undo()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" in self.h5file)\n self.assertTrue(\"/otherarray5\" not in self.h5file)\n self.assertTrue(\"/otherarray6\" not in self.h5file)\n\n # Unwind another mark\n self.h5file.undo()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n self.assertTrue(\"/otherarray5\" not in self.h5file)\n self.assertTrue(\"/otherarray6\" not in self.h5file)\n\n # Unwind all marks\n self.h5file.undo()\n self.assertTrue(\"/otherarray1\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n self.assertTrue(\"/otherarray5\" not in self.h5file)\n self.assertTrue(\"/otherarray6\" not in self.h5file)\n\n # Redo until the next mark\n self._do_reopen()\n self.h5file.redo()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n self.assertTrue(\"/otherarray5\" not in self.h5file)\n self.assertTrue(\"/otherarray6\" not in self.h5file)\n\n # Redo until the next mark\n self.h5file.redo()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" in self.h5file)\n self.assertTrue(\"/otherarray5\" not in self.h5file)\n self.assertTrue(\"/otherarray6\" not in self.h5file)\n\n # Redo until the end\n self.h5file.redo()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" in self.h5file)\n self.assertTrue(\"/otherarray5\" in self.h5file)\n self.assertTrue(\"/otherarray6\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray2.read(), [4, 5])\n self.assertEqual(self.h5file.root.otherarray3.read(), [5, 6])\n self.assertEqual(self.h5file.root.otherarray4.read(), [6, 7])\n self.assertEqual(self.h5file.root.otherarray5.read(), [7, 8])\n self.assertEqual(self.h5file.root.otherarray6.read(), [8, 9])\n self.assertEqual(self.h5file.root.otherarray1.title, \"Another array 1\")\n self.assertEqual(self.h5file.root.otherarray2.title, \"Another array 2\")\n self.assertEqual(self.h5file.root.otherarray3.title, \"Another array 3\")\n self.assertEqual(self.h5file.root.otherarray4.title, \"Another array 4\")\n self.assertEqual(self.h5file.root.otherarray5.title, \"Another array 5\")\n self.assertEqual(self.h5file.root.otherarray6.title, \"Another array 6\")", "metadata": "root.BasicTestCase.test03_6times3marks", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 174 }, { "content": " def test04_6times3marksro(self):\n \"\"\"Checking with six operations, three marks and do/undo in random\n order.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test04_6times3marksro...\" %\n self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Put a mark\n self.h5file.mark()\n self._do_reopen()\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n self.h5file.create_array('/', 'otherarray4', [6, 7], \"Another array 4\")\n\n # Unwind the previous mark\n self.h5file.undo()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Put a mark in the middle of stack\n if common.verbose:\n print(\"All nodes:\", self.h5file.walk_nodes())\n self.h5file.mark()\n self._do_reopen()\n self.h5file.create_array('/', 'otherarray5', [7, 8], \"Another array 5\")\n self.h5file.create_array('/', 'otherarray6', [8, 9], \"Another array 6\")\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n self.assertTrue(\"/otherarray5\" in self.h5file)\n self.assertTrue(\"/otherarray6\" in self.h5file)\n\n # Unwind previous mark\n self.h5file.undo()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n self.assertTrue(\"/otherarray5\" not in self.h5file)\n self.assertTrue(\"/otherarray6\" not in self.h5file)\n\n # Redo until the last mark\n self.h5file.redo()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n self.assertTrue(\"/otherarray5\" in self.h5file)\n self.assertTrue(\"/otherarray6\" in self.h5file)\n\n # Redo until the next mark (non-existent, so no action)\n self._do_reopen()\n self.h5file.redo()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n self.assertTrue(\"/otherarray5\" in self.h5file)\n self.assertTrue(\"/otherarray6\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray2.read(), [4, 5])\n self.assertEqual(self.h5file.root.otherarray5.read(), [7, 8])\n self.assertEqual(self.h5file.root.otherarray6.read(), [8, 9])\n self.assertEqual(self.h5file.root.otherarray1.title, \"Another array 1\")\n self.assertEqual(self.h5file.root.otherarray2.title, \"Another array 2\")\n self.assertEqual(self.h5file.root.otherarray5.title, \"Another array 5\")\n self.assertEqual(self.h5file.root.otherarray6.title, \"Another array 6\")", "metadata": "root.BasicTestCase.test04_6times3marksro", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 267 }, { "content": " def test05_destructive(self):\n \"\"\"Checking with a destructive action during undo.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test05_destructive...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n\n # Put a mark\n self.h5file.mark()\n self._do_reopen()\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Do the destructive operation\n self._do_reopen()\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n\n # Check objects\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray1.title, \"Another array 1\")\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray3.read(), [5, 6])\n self.assertEqual(self.h5file.root.otherarray3.title, \"Another array 3\")", "metadata": "root.BasicTestCase.test05_destructive", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 346 }, { "content": " def test05b_destructive(self):\n \"\"\"Checking with a destructive action during undo (II)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test05b_destructive...\" %\n self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n\n # Put a mark\n self._do_reopen()\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Do the destructive operation\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n\n # Put a mark\n self._do_reopen()\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray4', [6, 7], \"Another array 4\")\n self.assertTrue(\"/otherarray4\" in self.h5file)\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check objects\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray1.title, \"Another array 1\")\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray3.read(), [5, 6])\n self.assertEqual(self.h5file.root.otherarray3.title, \"Another array 3\")\n self.assertTrue(\"/otherarray4\" not in self.h5file)", "metadata": "root.BasicTestCase.test05b_destructive", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 380 }, { "content": " def test05c_destructive(self):\n \"\"\"Checking with a destructive action during undo (III)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test05c_destructive...\" %\n self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n\n # Put a mark\n self.h5file.mark()\n self._do_reopen()\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Do the destructive operation\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n\n # Put a mark\n self.h5file.mark()\n self._do_reopen()\n self.h5file.create_array('/', 'otherarray4', [6, 7], \"Another array 4\")\n self.assertTrue(\"/otherarray4\" in self.h5file)\n\n # Now unwind twice\n self.h5file.undo()\n self._do_reopen()\n self.h5file.undo()\n\n # Check objects\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)", "metadata": "root.BasicTestCase.test05c_destructive", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 424 }, { "content": " def test05d_destructive(self):\n \"\"\"Checking with a destructive action during undo (IV)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test05d_destructive...\" %\n self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n\n # Put a mark\n self._do_reopen()\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Do the destructive operation\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n\n # Put a mark\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray4', [6, 7], \"Another array 4\")\n self.assertTrue(\"/otherarray4\" in self.h5file)\n\n # Now, go to the first mark\n self._do_reopen()\n self.h5file.undo(0)\n\n # Check objects\n self.assertTrue(\"/otherarray1\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)", "metadata": "root.BasicTestCase.test05d_destructive", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 466 }, { "content": " def test05e_destructive(self):\n \"\"\"Checking with a destructive action during undo (V)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test05e_destructive...\" %\n self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n\n # Put a mark\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Now undo the past operation\n self.h5file.undo()\n self._do_reopen()\n\n # Do the destructive operation\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n\n # Now, unwind the actions\n self.h5file.undo(0)\n self._do_reopen()\n\n # Check objects\n self.assertTrue(\"/otherarray1\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)", "metadata": "root.BasicTestCase.test05e_destructive", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 506 }, { "content": " def test05f_destructive(self):\n \"\"\"Checking with a destructive creation of existing node during undo\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test05f_destructive...\" %\n self.__class__.__name__)\n\n self.h5file.enable_undo()\n self.h5file.create_array('/', 'newarray', [1])\n self.h5file.undo()\n self._do_reopen()\n self.assertTrue('/newarray' not in self.h5file)\n newarr = self.h5file.create_array('/', 'newarray', [1])\n self.h5file.undo()\n self.assertTrue('/newarray' not in self.h5file)\n self._do_reopen()\n self.h5file.redo()\n self.assertTrue('/newarray' in self.h5file)\n if not self._reopen_flag:\n self.assertTrue(self.h5file.root.newarray is newarr)", "metadata": "root.BasicTestCase.test05f_destructive", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 540 }, { "content": " def test06_totalunwind(self):\n \"\"\"Checking do/undo (total unwind)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test06_totalunwind...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray', [3, 4], \"Another array\")\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Now undo the past operations\n self._do_reopen()\n self.h5file.undo(0)\n self.assertTrue(\"/otherarray\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)", "metadata": "root.BasicTestCase.test06_totalunwind", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 562 }, { "content": " def test07_totalrewind(self):\n \"\"\"Checking do/undo (total rewind)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test07_totalunwind...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray', [3, 4], \"Another array\")\n self.h5file.mark()\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Now undo the past operations\n self.h5file.undo(0)\n\n # Redo all the operations\n self._do_reopen()\n self.h5file.redo(-1)\n\n # Check that objects has come back to life in a sane state\n self.assertTrue(\"/otherarray\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray2.read(), [4, 5])\n self.assertEqual(self.h5file.root.otherarray.title, \"Another array\")\n self.assertEqual(self.h5file.root.otherarray2.title, \"Another array 2\")", "metadata": "root.BasicTestCase.test07_totalrewind", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 583 }, { "content": " def test08_marknames(self):\n \"\"\"Checking mark names.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test08_marknames...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n self.h5file.mark(\"first\")\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n self.h5file.mark(\"second\")\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n self.h5file.mark(\"third\")\n self.h5file.create_array('/', 'otherarray4', [6, 7], \"Another array 4\")\n\n # Now go to mark \"first\"\n self.h5file.undo(\"first\")\n self._do_reopen()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Go to mark \"third\"\n self.h5file.redo(\"third\")\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Now go to mark \"second\"\n self.h5file.undo(\"second\")\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Go to the end\n self._do_reopen()\n self.h5file.redo(-1)\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" in self.h5file)\n\n # Check that objects has come back to life in a sane state\n self.assertEqual(self.h5file.root.otherarray1.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray2.read(), [4, 5])\n self.assertEqual(self.h5file.root.otherarray3.read(), [5, 6])\n self.assertEqual(self.h5file.root.otherarray4.read(), [6, 7])", "metadata": "root.BasicTestCase.test08_marknames", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 613 }, { "content": " def test08_initialmark(self):\n \"\"\"Checking initial mark.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test08_initialmark...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n initmid = self.h5file.get_current_mark()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray', [3, 4], \"Another array\")\n self.h5file.mark()\n self._do_reopen()\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n\n # Now undo the past operations\n self.h5file.undo(initmid)\n self.assertTrue(\"/otherarray\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n\n # Redo all the operations\n self.h5file.redo(-1)\n self._do_reopen()\n\n # Check that objects has come back to life in a sane state\n self.assertTrue(\"/otherarray\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray2.read(), [4, 5])\n self.assertEqual(self.h5file.root.otherarray.title, \"Another array\")\n self.assertEqual(self.h5file.root.otherarray2.title, \"Another array 2\")", "metadata": "root.BasicTestCase.test08_initialmark", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 668 }, { "content": " def test09_marknames(self):\n \"\"\"Checking mark names (wrong direction)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test09_marknames...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n self.h5file.mark(\"first\")\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n self.h5file.mark(\"second\")\n self._do_reopen()\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n self.h5file.mark(\"third\")\n self.h5file.create_array('/', 'otherarray4', [6, 7], \"Another array 4\")\n\n # Now go to mark \"first\"\n self.h5file.undo(\"first\")\n\n # Try to undo up to mark \"third\"\n with self.assertRaises(tables.UndoRedoError):\n self.h5file.undo(\"third\")\n\n # Now go to mark \"third\"\n self.h5file.redo(\"third\")\n self._do_reopen()\n\n # Try to redo up to mark \"second\"\n with self.assertRaises(tables.UndoRedoError):\n self.h5file.redo(\"second\")\n\n # Final checks\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)", "metadata": "root.BasicTestCase.test09_marknames", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 702 }, { "content": " def test10_goto(self):\n \"\"\"Checking mark names (goto)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test10_goto...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n self._do_reopen()\n self.h5file.mark(\"first\")\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n self.h5file.mark(\"second\")\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n self._do_reopen()\n self.h5file.mark(\"third\")\n self.h5file.create_array('/', 'otherarray4', [6, 7], \"Another array 4\")\n\n # Now go to mark \"first\"\n self.h5file.goto(\"first\")\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Go to mark \"third\"\n self.h5file.goto(\"third\")\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Now go to mark \"second\"\n self._do_reopen()\n self.h5file.goto(\"second\")\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Go to the end\n self.h5file.goto(-1)\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" in self.h5file)\n\n # Check that objects has come back to life in a sane state\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray2.read(), [4, 5])\n self.assertEqual(self.h5file.root.otherarray3.read(), [5, 6])\n self.assertEqual(self.h5file.root.otherarray4.read(), [6, 7])", "metadata": "root.BasicTestCase.test10_goto", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 743 }, { "content": " def test10_gotoint(self):\n \"\"\"Checking mark sequential ids (goto)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test10_gotoint...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [3, 4], \"Another array 1\")\n self.h5file.mark(\"first\")\n self.h5file.create_array('/', 'otherarray2', [4, 5], \"Another array 2\")\n self.h5file.mark(\"second\")\n self._do_reopen()\n self.h5file.create_array('/', 'otherarray3', [5, 6], \"Another array 3\")\n self.h5file.mark(\"third\")\n self.h5file.create_array('/', 'otherarray4', [6, 7], \"Another array 4\")\n\n # Now go to mark \"first\"\n self.h5file.goto(1)\n self._do_reopen()\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Go to beginning\n self.h5file.goto(0)\n self.assertTrue(\"/otherarray1\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Go to mark \"third\"\n self._do_reopen()\n self.h5file.goto(3)\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Now go to mark \"second\"\n self.h5file.goto(2)\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n self.assertTrue(\"/otherarray4\" not in self.h5file)\n\n # Go to the end\n self._do_reopen()\n self.h5file.goto(-1)\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertTrue(\"/otherarray4\" in self.h5file)\n\n # Check that objects has come back to life in a sane state\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.read(), [3, 4])\n self.assertEqual(self.h5file.root.otherarray2.read(), [4, 5])\n self.assertEqual(self.h5file.root.otherarray3.read(), [5, 6])\n self.assertEqual(self.h5file.root.otherarray4.read(), [6, 7])", "metadata": "root.BasicTestCase.test10_gotoint", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 800 }, { "content": " def test12_keepMark(self):\n \"\"\"Ensuring the mark is kept after an UNDO operation\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test12_keepMark...\" % self.__class__.__name__)\n\n self.h5file.enable_undo()\n self.h5file.create_array('/', 'newarray1', [1])\n\n mid = self.h5file.mark()\n self.assertTrue(mid is not None)\n self._do_reopen()\n self.h5file.undo()\n\n # We should have moved to the initial mark.\n self.assertEqual(self.h5file.get_current_mark(), 0)\n\n # So /newarray1 should not be there.\n self.assertTrue('/newarray1' not in self.h5file)", "metadata": "root.BasicTestCase.test12_keepMark", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 891 }, { "content": " def test13_severalEnableDisable(self):\n \"\"\"Checking that successive enable/disable Undo works\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test13_severalEnableDisable...\" %\n self.__class__.__name__)\n\n self.h5file.enable_undo()\n self.h5file.create_array('/', 'newarray1', [1])\n self.h5file.undo()\n self._do_reopen()\n\n # We should have moved to 'mid' mark, not the initial mark.\n self.assertEqual(self.h5file.get_current_mark(), 0)\n\n # So /newarray1 should still be there.\n self.assertTrue('/newarray1' not in self.h5file)\n\n # Close this do/undo session\n self.h5file.disable_undo()\n\n # Do something\n self.h5file.create_array('/', 'newarray2', [1])\n\n # Enable again do/undo\n self.h5file.enable_undo()\n self.h5file.create_array('/', 'newarray3', [1])\n mid = self.h5file.mark()\n self.h5file.create_array('/', 'newarray4', [1])\n self.h5file.undo()\n\n # We should have moved to 'mid' mark, not the initial mark.\n self.assertEqual(self.h5file.get_current_mark(), mid)\n\n # So /newarray2 and /newarray3 should still be there.\n self.assertTrue('/newarray1' not in self.h5file)\n self.assertTrue('/newarray2' in self.h5file)\n self.assertTrue('/newarray3' in self.h5file)\n self.assertTrue('/newarray4' not in self.h5file)\n\n # Close this do/undo session\n self._do_reopen()\n self.h5file.disable_undo()\n\n # Enable again do/undo\n self.h5file.enable_undo()\n self.h5file.create_array('/', 'newarray1', [1])\n self.h5file.create_array('/', 'newarray4', [1])\n\n # So /newarray2 and /newarray3 should still be there.\n self.assertTrue('/newarray1' in self.h5file)\n self.assertTrue('/newarray2' in self.h5file)\n self.assertTrue('/newarray3' in self.h5file)\n self.assertTrue('/newarray4' in self.h5file)\n self.h5file.undo()\n self._do_reopen()\n self.assertTrue('/newarray1' not in self.h5file)\n self.assertTrue('/newarray2' in self.h5file)\n self.assertTrue('/newarray3' in self.h5file)\n self.assertTrue('/newarray4' not in self.h5file)\n\n # Close this do/undo session\n self.h5file.disable_undo()", "metadata": "root.BasicTestCase.test13_severalEnableDisable", "header": "['class', 'BasicTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 912 }, { "content": " def test00(self):\n \"\"\"Checking one action.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [1, 2], \"Another array 1\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that otherarray does not exist in the object tree\n self.assertTrue(\"/otherarray1\" not in self.h5file)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.title, \"Another array 1\")\n self.assertEqual(self.h5file.root.otherarray1.read(), [1, 2])", "metadata": "root.CreateArrayTestCase.test00", "header": "['class', 'CreateArrayTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1012 }, { "content": " def test01(self):\n \"\"\"Checking two actions.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [1, 2], \"Another array 1\")\n self.h5file.create_array('/', 'otherarray2', [2, 3], \"Another array 2\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that otherarray does not exist in the object tree\n self.assertTrue(\"/otherarray1\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.title, \"Another array 1\")\n self.assertEqual(self.h5file.root.otherarray2.title, \"Another array 2\")\n self.assertEqual(self.h5file.root.otherarray1.read(), [1, 2])\n self.assertEqual(self.h5file.root.otherarray2.read(), [2, 3])", "metadata": "root.CreateArrayTestCase.test01", "header": "['class', 'CreateArrayTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1039 }, { "content": " def test02(self):\n \"\"\"Checking three actions.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test02...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [1, 2], \"Another array 1\")\n self.h5file.create_array('/', 'otherarray2', [2, 3], \"Another array 2\")\n self.h5file.create_array('/', 'otherarray3', [3, 4], \"Another array 3\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that otherarray does not exist in the object tree\n self.assertTrue(\"/otherarray1\" not in self.h5file)\n self.assertTrue(\"/otherarray2\" not in self.h5file)\n self.assertTrue(\"/otherarray3\" not in self.h5file)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/otherarray2\" in self.h5file)\n self.assertTrue(\"/otherarray3\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.title, \"Another array 1\")\n self.assertEqual(self.h5file.root.otherarray2.title, \"Another array 2\")\n self.assertEqual(self.h5file.root.otherarray3.title, \"Another array 3\")\n self.assertEqual(self.h5file.root.otherarray1.read(), [1, 2])\n self.assertEqual(self.h5file.root.otherarray2.read(), [2, 3])\n self.assertEqual(self.h5file.root.otherarray3.read(), [3, 4])", "metadata": "root.CreateArrayTestCase.test02", "header": "['class', 'CreateArrayTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1071 }, { "content": " def test03(self):\n \"\"\"Checking three actions in different depth levels.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test03...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.create_array('/', 'otherarray1', [1, 2], \"Another array 1\")\n self.h5file.create_array('/agroup', 'otherarray2',\n [2, 3], \"Another array 2\")\n self.h5file.create_array('/agroup/agroup3', 'otherarray3',\n [3, 4], \"Another array 3\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that otherarray does not exist in the object tree\n self.assertTrue(\"/otherarray1\" not in self.h5file)\n self.assertTrue(\"/agroup/otherarray2\" not in self.h5file)\n self.assertTrue(\"/agroup/agroup3/otherarray3\" not in self.h5file)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/otherarray1\" in self.h5file)\n self.assertTrue(\"/agroup/otherarray2\" in self.h5file)\n self.assertTrue(\"/agroup/agroup3/otherarray3\" in self.h5file)\n self.assertEqual(self.h5file.root.otherarray1.title, \"Another array 1\")\n self.assertEqual(self.h5file.root.agroup.otherarray2.title,\n \"Another array 2\")\n self.assertEqual(self.h5file.root.agroup.agroup3.otherarray3.title,\n \"Another array 3\")\n self.assertEqual(self.h5file.root.otherarray1.read(), [1, 2])\n self.assertEqual(self.h5file.root.agroup.otherarray2.read(), [2, 3])\n self.assertEqual(self.h5file.root.agroup.agroup3.otherarray3.read(),\n [3, 4])", "metadata": "root.CreateArrayTestCase.test03", "header": "['class', 'CreateArrayTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1108 }, { "content": " def test00(self):\n \"\"\"Checking one action.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new group\n self.h5file.create_group('/', 'othergroup1', \"Another group 1\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that othergroup1 does not exist in the object tree\n self.assertTrue(\"/othergroup1\" not in self.h5file)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that othergroup1 has come back to life in a sane state\n self.assertTrue(\"/othergroup1\" in self.h5file)\n self.assertEqual(self.h5file.root.othergroup1._v_title,\n \"Another group 1\")", "metadata": "root.CreateGroupTestCase.test00", "header": "['class', 'CreateGroupTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1179 }, { "content": " def test01(self):\n \"\"\"Checking two actions.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new group\n self.h5file.create_group('/', 'othergroup1', \"Another group 1\")\n self.h5file.create_group('/', 'othergroup2', \"Another group 2\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that othergroup does not exist in the object tree\n self.assertTrue(\"/othergroup1\" not in self.h5file)\n self.assertTrue(\"/othergroup2\" not in self.h5file)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that othergroup* has come back to life in a sane state\n self.assertTrue(\"/othergroup1\" in self.h5file)\n self.assertTrue(\"/othergroup2\" in self.h5file)\n self.assertEqual(self.h5file.root.othergroup1._v_title,\n \"Another group 1\")\n self.assertEqual(self.h5file.root.othergroup2._v_title,\n \"Another group 2\")", "metadata": "root.CreateGroupTestCase.test01", "header": "['class', 'CreateGroupTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1206 }, { "content": " def test02(self):\n \"\"\"Checking three actions.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test02...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new group\n self.h5file.create_group('/', 'othergroup1', \"Another group 1\")\n self.h5file.create_group('/', 'othergroup2', \"Another group 2\")\n self.h5file.create_group('/', 'othergroup3', \"Another group 3\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that othergroup* does not exist in the object tree\n self.assertTrue(\"/othergroup1\" not in self.h5file)\n self.assertTrue(\"/othergroup2\" not in self.h5file)\n self.assertTrue(\"/othergroup3\" not in self.h5file)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that othergroup* has come back to life in a sane state\n self.assertTrue(\"/othergroup1\" in self.h5file)\n self.assertTrue(\"/othergroup2\" in self.h5file)\n self.assertTrue(\"/othergroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.othergroup1._v_title,\n \"Another group 1\")\n self.assertEqual(self.h5file.root.othergroup2._v_title,\n \"Another group 2\")\n self.assertEqual(self.h5file.root.othergroup3._v_title,\n \"Another group 3\")", "metadata": "root.CreateGroupTestCase.test02", "header": "['class', 'CreateGroupTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1238 }, { "content": " def test03(self):\n \"\"\"Checking three actions in different depth levels.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test03...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new group\n self.h5file.create_group('/', 'othergroup1', \"Another group 1\")\n self.h5file.create_group(\n '/othergroup1', 'othergroup2', \"Another group 2\")\n self.h5file.create_group(\n '/othergroup1/othergroup2', 'othergroup3', \"Another group 3\")\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that othergroup* does not exist in the object tree\n self.assertTrue(\"/othergroup1\" not in self.h5file)\n self.assertTrue(\"/othergroup1/othergroup2\" not in self.h5file)\n self.assertTrue(\n \"/othergroup1/othergroup2/othergroup3\" not in self.h5file)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that othergroup* has come back to life in a sane state\n self.assertTrue(\"/othergroup1\" in self.h5file)\n self.assertTrue(\"/othergroup1/othergroup2\" in self.h5file)\n self.assertTrue(\"/othergroup1/othergroup2/othergroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.othergroup1._v_title,\n \"Another group 1\")\n self.assertEqual(self.h5file.root.othergroup1.othergroup2._v_title,\n \"Another group 2\")\n self.assertEqual(\n self.h5file.root.othergroup1.othergroup2.othergroup3._v_title,\n \"Another group 3\")", "metadata": "root.CreateGroupTestCase.test03", "header": "['class', 'CreateGroupTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1275 }, { "content": " def test00(self):\n \"\"\"Checking rename_node (over Groups without children)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.rename_node('/agroup2', 'agroup3')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that it does not exist in the object tree\n self.assertTrue(\"/agroup2\" in self.h5file)\n self.assertTrue(\"/agroup3\" not in self.h5file)\n self.assertEqual(self.h5file.root.agroup2._v_title, \"Group title 2\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/agroup2\" not in self.h5file)\n self.assertTrue(\"/agroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup3._v_title, \"Group title 2\")", "metadata": "root.RenameNodeTestCase.test00", "header": "['class', 'RenameNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1386 }, { "content": " def test01(self):\n \"\"\"Checking rename_node (over Groups with children)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.rename_node('/agroup', 'agroup3')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that it does not exist in the object tree\n self.assertTrue(\"/agroup\" in self.h5file)\n self.assertTrue(\"/agroup3\" not in self.h5file)\n\n # Check that children are reachable\n self.assertTrue(\"/agroup/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup/agroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup._v_title, \"Group title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/agroup\" not in self.h5file)\n self.assertTrue(\"/agroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup3._v_title, \"Group title\")\n\n # Check that children are reachable\n self.assertTrue(\"/agroup3/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup3/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup3/agroup3\" in self.h5file)", "metadata": "root.RenameNodeTestCase.test01", "header": "['class', 'RenameNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1415 }, { "content": " def test01b(self):\n \"\"\"Checking rename_node (over Groups with children 2)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01b...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.rename_node('/agroup', 'agroup3')\n self.h5file.rename_node('/agroup3', 'agroup4')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that it does not exist in the object tree\n self.assertTrue(\"/agroup\" in self.h5file)\n self.assertTrue(\"/agroup4\" not in self.h5file)\n\n # Check that children are reachable\n self.assertTrue(\"/agroup/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup/agroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup._v_title, \"Group title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/agroup\" not in self.h5file)\n self.assertTrue(\"/agroup4\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup4._v_title, \"Group title\")\n\n # Check that children are reachable\n self.assertTrue(\"/agroup4/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup4/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup4/agroup3\" in self.h5file)", "metadata": "root.RenameNodeTestCase.test01b", "header": "['class', 'RenameNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1454 }, { "content": " def test02(self):\n \"\"\"Checking rename_node (over Leaves)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test02...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.rename_node('/anarray', 'anarray2')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that otherarray does not exist in the object tree\n self.assertTrue(\"/anarray\" in self.h5file)\n self.assertTrue(\"/anarray2\" not in self.h5file)\n self.assertEqual(self.h5file.root.anarray.title, \"Array title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/anarray\" not in self.h5file)\n self.assertTrue(\"/anarray2\" in self.h5file)\n self.assertEqual(self.h5file.root.anarray2.title, \"Array title\")", "metadata": "root.RenameNodeTestCase.test02", "header": "['class', 'RenameNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1494 }, { "content": " def test03(self):\n \"\"\"Checking rename_node (over Tables)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test03...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.rename_node('/table', 'table2')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that table2 does not exist in the object tree\n self.assertTrue(\"/table\" in self.h5file)\n table = self.h5file.root.table\n self.assertTrue(table.cols.var1.index is not None)\n self.assertTrue(table.cols.var2.index is not None)\n self.assertTrue(table.cols.var3.index is not None)\n self.assertTrue(table.cols.var4.index is None)\n self.assertEqual(table.cols.var1.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var2.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var3.index.nelements, minRowIndex)\n self.assertTrue(\"/table2\" not in self.h5file)\n self.assertEqual(self.h5file.root.table.title, \"Indexed\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that table2 has come back to life in a sane state\n self.assertTrue(\"/table\" not in self.h5file)\n self.assertTrue(\"/table2\" in self.h5file)\n self.assertEqual(self.h5file.root.table2.title, \"Indexed\")\n table = self.h5file.root.table2\n self.assertTrue(table.cols.var1.index is not None)\n self.assertTrue(table.cols.var2.index is not None)\n self.assertTrue(table.cols.var3.index is not None)\n self.assertEqual(table.cols.var1.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var2.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var3.index.nelements, minRowIndex)\n self.assertTrue(table.cols.var4.index is None)", "metadata": "root.RenameNodeTestCase.test03", "header": "['class', 'RenameNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1523 }, { "content": " def test00(self):\n \"\"\"Checking move_node (over Leaf)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.move_node('/anarray', '/agroup/agroup3')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that it does not exist in the object tree\n self.assertTrue(\"/anarray\" in self.h5file)\n self.assertTrue(\"/agroup/agroup3/anarray\" not in self.h5file)\n self.assertEqual(self.h5file.root.anarray.title, \"Array title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/anarray\" not in self.h5file)\n self.assertTrue(\"/agroup/agroup3/anarray\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup.agroup3.anarray.title,\n \"Array title\")", "metadata": "root.MoveNodeTestCase.test00", "header": "['class', 'MoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1600 }, { "content": " def test01(self):\n \"\"\"Checking move_node (over Groups with children)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.move_node('/agroup', '/agroup2', 'agroup3')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that it does not exist in the object tree\n self.assertTrue(\"/agroup\" in self.h5file)\n self.assertTrue(\"/agroup2/agroup3\" not in self.h5file)\n\n # Check that children are reachable\n self.assertTrue(\"/agroup/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup/agroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup._v_title, \"Group title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/agroup\" not in self.h5file)\n self.assertTrue(\"/agroup2/agroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup2.agroup3._v_title,\n \"Group title\")\n\n # Check that children are reachable\n self.assertTrue(\"/agroup2/agroup3/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup2/agroup3/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup2/agroup3/agroup3\" in self.h5file)", "metadata": "root.MoveNodeTestCase.test01", "header": "['class', 'MoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1630 }, { "content": " def test01b(self):\n \"\"\"Checking move_node (over Groups with children 2)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01b...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.move_node('/agroup', '/', 'agroup3')\n self.h5file.move_node('/agroup3', '/agroup2', 'agroup4')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that it does not exist in the object tree\n self.assertTrue(\"/agroup\" in self.h5file)\n self.assertTrue(\"/agroup2/agroup4\" not in self.h5file)\n\n # Check that children are reachable\n self.assertTrue(\"/agroup/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup/agroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup._v_title, \"Group title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/agroup\" not in self.h5file)\n self.assertTrue(\"/agroup2/agroup4\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup2.agroup4._v_title,\n \"Group title\")\n\n # Check that children are reachable\n self.assertTrue(\"/agroup2/agroup4/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup2/agroup4/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup2/agroup4/agroup3\" in self.h5file)", "metadata": "root.MoveNodeTestCase.test01b", "header": "['class', 'MoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1670 }, { "content": " def test02(self):\n \"\"\"Checking move_node (over Leaves)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test02...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.move_node('/anarray', '/agroup2', 'anarray2')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that otherarray does not exist in the object tree\n self.assertTrue(\"/anarray\" in self.h5file)\n self.assertTrue(\"/agroup2/anarray2\" not in self.h5file)\n self.assertEqual(self.h5file.root.anarray.title, \"Array title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that otherarray has come back to life in a sane state\n self.assertTrue(\"/anarray\" not in self.h5file)\n self.assertTrue(\"/agroup2/anarray2\" in self.h5file)\n self.assertEqual(\n self.h5file.root.agroup2.anarray2.title, \"Array title\")", "metadata": "root.MoveNodeTestCase.test02", "header": "['class', 'MoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1711 }, { "content": " def test03(self):\n \"\"\"Checking move_node (over Tables)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test03...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.move_node('/table', '/agroup2', 'table2')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that table2 does not exist in the object tree\n self.assertTrue(\"/table\" in self.h5file)\n self.assertTrue(\"/agroup2/table2\" not in self.h5file)\n table = self.h5file.root.table\n self.assertTrue(table.cols.var1.index is not None)\n self.assertTrue(table.cols.var2.index is not None)\n self.assertTrue(table.cols.var3.index is not None)\n self.assertTrue(table.cols.var4.index is None)\n self.assertEqual(table.cols.var1.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var2.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var3.index.nelements, minRowIndex)\n self.assertEqual(self.h5file.root.table.title, \"Indexed\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that table2 has come back to life in a sane state\n self.assertTrue(\"/table\" not in self.h5file)\n self.assertTrue(\"/agroup2/table2\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup2.table2.title, \"Indexed\")\n table = self.h5file.root.agroup2.table2\n self.assertTrue(table.cols.var1.index is not None)\n self.assertTrue(table.cols.var2.index is not None)\n self.assertTrue(table.cols.var3.index is not None)\n self.assertEqual(table.cols.var1.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var2.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var3.index.nelements, minRowIndex)\n self.assertTrue(table.cols.var4.index is None)", "metadata": "root.MoveNodeTestCase.test03", "header": "['class', 'MoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1741 }, { "content": " def test00(self):\n \"\"\"Checking remove_node (over Leaf)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Delete an existing array\n self.h5file.remove_node('/anarray')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that it does exist in the object tree\n self.assertTrue(\"/anarray\" in self.h5file)\n self.assertEqual(self.h5file.root.anarray.title, \"Array title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that array has gone again\n self.assertTrue(\"/anarray\" not in self.h5file)", "metadata": "root.RemoveNodeTestCase.test00", "header": "['class', 'RemoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1818 }, { "content": " def test00b(self):\n \"\"\"Checking remove_node (over several Leaves)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00b...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Delete a couple of arrays\n self.h5file.remove_node('/anarray')\n self.h5file.remove_node('/agroup/anarray2')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that arrays has come into life\n self.assertTrue(\"/anarray\" in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" in self.h5file)\n self.assertEqual(self.h5file.root.anarray.title, \"Array title\")\n self.assertEqual(\n self.h5file.root.agroup.anarray2.title, \"Array title 2\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that arrays has disappeared again\n self.assertTrue(\"/anarray\" not in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" not in self.h5file)", "metadata": "root.RemoveNodeTestCase.test00b", "header": "['class', 'RemoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1844 }, { "content": " def test00c(self):\n \"\"\"Checking remove_node (over Tables)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00c...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Create a new array\n self.h5file.remove_node('/table')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that table2 does not exist in the object tree\n self.assertTrue(\"/table\" in self.h5file)\n table = self.h5file.root.table\n self.assertTrue(table.cols.var1.index is not None)\n self.assertTrue(table.cols.var2.index is not None)\n self.assertTrue(table.cols.var3.index is not None)\n self.assertTrue(table.cols.var4.index is None)\n self.assertEqual(table.cols.var1.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var2.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var3.index.nelements, minRowIndex)\n self.assertEqual(self.h5file.root.table.title, \"Indexed\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that table2 has come back to life in a sane state\n self.assertTrue(\"/table\" not in self.h5file)", "metadata": "root.RemoveNodeTestCase.test00c", "header": "['class', 'RemoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1875 }, { "content": " def test01(self):\n \"\"\"Checking remove_node (over Groups with children)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Delete a group recursively\n self.h5file.remove_node('/agroup', recursive=1)\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that parent and children has come into life in a sane state\n self.assertTrue(\"/agroup\" in self.h5file)\n self.assertTrue(\"/agroup/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup/agroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup._v_title, \"Group title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that parent and children are not reachable\n self.assertTrue(\"/agroup\" not in self.h5file)\n self.assertTrue(\"/agroup/anarray1\" not in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" not in self.h5file)\n self.assertTrue(\"/agroup/agroup3\" not in self.h5file)", "metadata": "root.RemoveNodeTestCase.test01", "header": "['class', 'RemoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1909 }, { "content": " def test01b(self):\n \"\"\"Checking remove_node (over Groups with children 2)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01b...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # Remove a couple of groups\n self.h5file.remove_node('/agroup', recursive=1)\n self.h5file.remove_node('/agroup2')\n\n # Now undo the past operation\n self.h5file.undo()\n\n # Check that they does exist in the object tree\n self.assertTrue(\"/agroup\" in self.h5file)\n self.assertTrue(\"/agroup2\" in self.h5file)\n\n # Check that children are reachable\n self.assertTrue(\"/agroup/anarray1\" in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" in self.h5file)\n self.assertTrue(\"/agroup/agroup3\" in self.h5file)\n self.assertEqual(self.h5file.root.agroup._v_title, \"Group title\")\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that groups does not exist again\n self.assertTrue(\"/agroup\" not in self.h5file)\n self.assertTrue(\"/agroup2\" not in self.h5file)\n\n # Check that children are not reachable\n self.assertTrue(\"/agroup/anarray1\" not in self.h5file)\n self.assertTrue(\"/agroup/anarray2\" not in self.h5file)\n self.assertTrue(\"/agroup/agroup3\" not in self.h5file)", "metadata": "root.RemoveNodeTestCase.test01b", "header": "['class', 'RemoveNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 1941 }, { "content": " def test00_copyLeaf(self):\n \"\"\"Checking copy_node (over Leaves)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00_copyLeaf...\" % self.__class__.__name__)\n\n # Enable undo/redo.\n self.h5file.enable_undo()\n\n # /anarray => /agroup/agroup3/\n new_node = self.h5file.copy_node('/anarray', '/agroup/agroup3')\n\n # Undo the copy.\n self.h5file.undo()\n\n # Check that the copied node does not exist in the object tree.\n self.assertTrue('/agroup/agroup3/anarray' not in self.h5file)\n\n # Redo the copy.\n self.h5file.redo()\n\n # Check that the copied node exists again in the object tree.\n self.assertTrue('/agroup/agroup3/anarray' in self.h5file)\n self.assertTrue(self.h5file.root.agroup.agroup3.anarray is new_node)", "metadata": "root.CopyNodeTestCase.test00_copyLeaf", "header": "['class', 'CopyNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2012 }, { "content": " def test00b_copyTable(self):\n \"\"\"Checking copy_node (over Tables)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00b_copyTable...\" % self.__class__.__name__)\n\n # open the do/undo\n self.h5file.enable_undo()\n\n # /table => /agroup/agroup3/\n warnings.filterwarnings(\"ignore\", category=UserWarning)\n table = self.h5file.copy_node(\n '/table', '/agroup/agroup3', propindexes=True)\n warnings.filterwarnings(\"default\", category=UserWarning)\n self.assertTrue(\"/agroup/agroup3/table\" in self.h5file)\n\n table = self.h5file.root.agroup.agroup3.table\n self.assertEqual(table.title, \"Indexed\")\n self.assertTrue(table.cols.var1.index is not None)\n self.assertTrue(table.cols.var2.index is not None)\n self.assertTrue(table.cols.var3.index is not None)\n self.assertEqual(table.cols.var1.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var2.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var3.index.nelements, minRowIndex)\n self.assertTrue(table.cols.var4.index is None)\n\n # Now undo the past operation\n self.h5file.undo()\n table = self.h5file.root.table\n self.assertTrue(table.cols.var1.index is not None)\n self.assertTrue(table.cols.var2.index is not None)\n self.assertTrue(table.cols.var3.index is not None)\n self.assertTrue(table.cols.var4.index is None)\n self.assertEqual(table.cols.var1.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var2.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var3.index.nelements, minRowIndex)\n\n # Check that the copied node does not exist in the object tree.\n self.assertTrue(\"/agroup/agroup3/table\" not in self.h5file)\n\n # Redo the operation\n self.h5file.redo()\n\n # Check that table has come back to life in a sane state\n self.assertTrue(\"/table\" in self.h5file)\n self.assertTrue(\"/agroup/agroup3/table\" in self.h5file)\n table = self.h5file.root.agroup.agroup3.table\n self.assertEqual(table.title, \"Indexed\")\n self.assertTrue(table.cols.var1.index is not None)\n self.assertTrue(table.cols.var2.index is not None)\n self.assertTrue(table.cols.var3.index is not None)\n self.assertEqual(table.cols.var1.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var2.index.nelements, minRowIndex)\n self.assertEqual(table.cols.var3.index.nelements, minRowIndex)\n self.assertTrue(table.cols.var4.index is None)", "metadata": "root.CopyNodeTestCase.test00b_copyTable", "header": "['class', 'CopyNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2038 }, { "content": " def test01_copyGroup(self):\n \"\"\"Copying a group (recursively).\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01_copyGroup...\" % self.__class__.__name__)\n\n # Enable undo/redo.\n self.h5file.enable_undo()\n\n # /agroup => /acopy\n new_node = self.h5file.copy_node(\n '/agroup', newname='acopy', recursive=True)\n\n # Undo the copy.\n self.h5file.undo()\n\n # Check that the copied node does not exist in the object tree.\n self.assertTrue('/acopy' not in self.h5file)\n self.assertTrue('/acopy/anarray1' not in self.h5file)\n self.assertTrue('/acopy/anarray2' not in self.h5file)\n self.assertTrue('/acopy/agroup3' not in self.h5file)\n\n # Redo the copy.\n self.h5file.redo()\n\n # Check that the copied node exists again in the object tree.\n self.assertTrue('/acopy' in self.h5file)\n self.assertTrue('/acopy/anarray1' in self.h5file)\n self.assertTrue('/acopy/anarray2' in self.h5file)\n self.assertTrue('/acopy/agroup3' in self.h5file)\n self.assertTrue(self.h5file.root.acopy is new_node)", "metadata": "root.CopyNodeTestCase.test01_copyGroup", "header": "['class', 'CopyNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2095 }, { "content": " def test02_copyLeafOverwrite(self):\n \"\"\"Copying a leaf, overwriting destination.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test02_copyLeafOverwrite...\" %\n self.__class__.__name__)\n\n # Enable undo/redo.\n self.h5file.enable_undo()\n\n # /anarray => /agroup/agroup\n oldNode = self.h5file.root.agroup\n new_node = self.h5file.copy_node(\n '/anarray', newname='agroup', overwrite=True)\n\n # Undo the copy.\n self.h5file.undo()\n\n # Check that the copied node does not exist in the object tree.\n # Check that the overwritten node exists again in the object tree.\n self.assertTrue(self.h5file.root.agroup is oldNode)\n\n # Redo the copy.\n self.h5file.redo()\n\n # Check that the copied node exists again in the object tree.\n # Check that the overwritten node does not exist in the object tree.\n self.assertTrue(self.h5file.root.agroup is new_node)", "metadata": "root.CopyNodeTestCase.test02_copyLeafOverwrite", "header": "['class', 'CopyNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2128 }, { "content": " def test03_copyChildren(self):\n \"\"\"Copying the children of a group\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test03_copyChildren...\" %\n self.__class__.__name__)\n\n # Enable undo/redo.\n self.h5file.enable_undo()\n\n # /agroup/* => /agroup/\n self.h5file.copy_children('/agroup', '/agroup2', recursive=True)\n\n # Undo the copy.\n self.h5file.undo()\n\n # Check that the copied nodes do not exist in the object tree.\n self.assertTrue('/agroup2/anarray1' not in self.h5file)\n self.assertTrue('/agroup2/anarray2' not in self.h5file)\n self.assertTrue('/agroup2/agroup3' not in self.h5file)\n\n # Redo the copy.\n self.h5file.redo()\n\n # Check that the copied nodes exist again in the object tree.\n self.assertTrue('/agroup2/anarray1' in self.h5file)\n self.assertTrue('/agroup2/anarray2' in self.h5file)\n self.assertTrue('/agroup2/agroup3' in self.h5file)", "metadata": "root.CopyNodeTestCase.test03_copyChildren", "header": "['class', 'CopyNodeTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2158 }, { "content": " def test00(self):\n \"\"\"Mix of create_array, create_group, renameNone, move_node,\n remove_node, copy_node and copy_children.\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00...\" % self.__class__.__name__)\n\n # Enable undo/redo.\n self.h5file.enable_undo()\n\n # Create an array\n self.h5file.create_array(self.h5file.root, 'anarray3',\n [1], \"Array title 3\")\n # Create a group\n self.h5file.create_group(self.h5file.root, 'agroup3', \"Group title 3\")\n\n # /anarray => /agroup/agroup3/\n new_node = self.h5file.copy_node('/anarray3', '/agroup/agroup3')\n new_node = self.h5file.copy_children(\n '/agroup', '/agroup3', recursive=1)\n\n # rename anarray\n self.h5file.rename_node('/anarray', 'anarray4')\n\n # Move anarray\n new_node = self.h5file.copy_node('/anarray3', '/agroup')\n\n # Remove anarray4\n self.h5file.remove_node('/anarray4')\n\n # Undo the actions\n self.h5file.undo()\n self.assertTrue('/anarray4' not in self.h5file)\n self.assertTrue('/anarray3' not in self.h5file)\n self.assertTrue('/agroup/agroup3/anarray3' not in self.h5file)\n self.assertTrue('/agroup3' not in self.h5file)\n self.assertTrue('/anarray4' not in self.h5file)\n self.assertTrue('/anarray' in self.h5file)\n\n # Redo the actions\n self.h5file.redo()\n\n # Check that the copied node exists again in the object tree.\n self.assertTrue('/agroup/agroup3/anarray3' in self.h5file)\n self.assertTrue('/agroup/anarray3' in self.h5file)\n self.assertTrue('/agroup3/agroup3/anarray3' in self.h5file)\n self.assertTrue('/agroup3/anarray3' not in self.h5file)\n self.assertTrue(self.h5file.root.agroup.anarray3 is new_node)\n self.assertTrue('/anarray' not in self.h5file)\n self.assertTrue('/anarray4' not in self.h5file)", "metadata": "root.ComplexTestCase.test00", "header": "['class', 'ComplexTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2217 }, { "content": " def test02(self):\n \"\"\"Test with multiple generations (Group case)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test02...\" % self.__class__.__name__)\n\n # Enable undo/redo.\n self.h5file.enable_undo()\n\n # remove /agroup\n self.h5file.remove_node('/agroup2')\n\n # Create a group in the same place\n self.h5file.create_group(self.h5file.root, 'agroup2', \"Group title 22\")\n\n # remove the group\n self.h5file.remove_node('/agroup2')\n\n # Create a group\n self.h5file.create_group(self.h5file.root, 'agroup2', \"Group title 3\")\n\n # remove the group\n self.h5file.remove_node('/agroup2')\n\n # Create a group\n self.h5file.create_group(self.h5file.root, 'agroup2', \"Group title 4\")\n\n # Create a child group\n self.h5file.create_group(self.h5file.root.agroup2, 'agroup5',\n \"Group title 5\")\n\n # Undo the actions\n self.h5file.undo()\n\n # Check that /agroup is in the state before enabling do/undo\n self.assertEqual(self.h5file.root.agroup2._v_title, \"Group title 2\")\n self.assertTrue('/agroup2' in self.h5file)\n\n # Redo the actions\n self.h5file.redo()\n self.assertEqual(self.h5file.root.agroup2._v_title, \"Group title 4\")\n self.assertEqual(self.h5file.root.agroup2.agroup5._v_title,\n \"Group title 5\")", "metadata": "root.ComplexTestCase.test02", "header": "['class', 'ComplexTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2309 }, { "content": " def test03(self):\n \"\"\"Test with multiple generations (Group case, recursive remove)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test03...\" % self.__class__.__name__)\n\n # Enable undo/redo.\n self.h5file.enable_undo()\n\n # remove /agroup\n self.h5file.remove_node('/agroup', recursive=1)\n\n # Create a group in the same place\n self.h5file.create_group(self.h5file.root, 'agroup', \"Group title 2\")\n\n # remove the group\n self.h5file.remove_node('/agroup')\n\n # Create a group\n self.h5file.create_group(self.h5file.root, 'agroup', \"Group title 3\")\n\n # remove the group\n self.h5file.remove_node('/agroup')\n\n # Create a group\n self.h5file.create_group(self.h5file.root, 'agroup', \"Group title 4\")\n\n # Create a child group\n self.h5file.create_group(self.h5file.root.agroup, 'agroup5',\n \"Group title 5\")\n # Undo the actions\n self.h5file.undo()\n\n # Check that /agroup is in the state before enabling do/undo\n self.assertTrue('/agroup' in self.h5file)\n self.assertEqual(self.h5file.root.agroup._v_title, \"Group title\")\n self.assertTrue('/agroup/anarray1' in self.h5file)\n self.assertTrue('/agroup/anarray2' in self.h5file)\n self.assertTrue('/agroup/agroup3' in self.h5file)\n self.assertTrue('/agroup/agroup5' not in self.h5file)\n\n # Redo the actions\n self.h5file.redo()\n self.assertTrue('/agroup' in self.h5file)\n self.assertEqual(self.h5file.root.agroup._v_title, \"Group title 4\")\n self.assertTrue('/agroup/agroup5' in self.h5file)\n self.assertEqual(\n self.h5file.root.agroup.agroup5._v_title, \"Group title 5\")", "metadata": "root.ComplexTestCase.test03", "header": "['class', 'ComplexTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2354 }, { "content": " def test03b(self):\n \"\"\"Test with multiple generations (Group case, recursive remove,\n case 2)\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test03b...\" % self.__class__.__name__)\n\n # Enable undo/redo.\n self.h5file.enable_undo()\n\n # Create a new group with a child\n self.h5file.create_group(self.h5file.root, 'agroup3', \"Group title 3\")\n self.h5file.create_group(self.h5file.root.agroup3, 'agroup4',\n \"Group title 4\")\n\n # remove /agroup3\n self.h5file.remove_node('/agroup3', recursive=1)\n\n # Create a group in the same place\n self.h5file.create_group(self.h5file.root, 'agroup3', \"Group title 4\")\n\n # Undo the actions\n self.h5file.undo()\n\n # Check that /agroup is in the state before enabling do/undo\n self.assertTrue('/agroup3' not in self.h5file)\n\n # Redo the actions\n self.h5file.redo()\n self.assertEqual(self.h5file.root.agroup3._v_title, \"Group title 4\")\n self.assertTrue('/agroup3' in self.h5file)\n self.assertTrue('/agroup/agroup4' not in self.h5file)", "metadata": "root.ComplexTestCase.test03b", "header": "['class', 'ComplexTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2404 }, { "content": " def test00_setAttr(self):\n \"\"\"Setting a nonexistent attribute\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test00_setAttr...\" % self.__class__.__name__)\n\n array = self.h5file.root.array\n attrs = array.attrs\n\n self.h5file.enable_undo()\n setattr(attrs, 'attr_0', 0)\n self.assertTrue('attr_0' in attrs)\n self.assertEqual(attrs.attr_0, 0)\n self.h5file.undo()\n self.assertTrue('attr_0' not in attrs)\n self.h5file.redo()\n self.assertTrue('attr_0' in attrs)\n self.assertEqual(attrs.attr_0, 0)", "metadata": "root.AttributesTestCase.test00_setAttr", "header": "['class', 'AttributesTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2454 }, { "content": " def test01_setAttrExisting(self):\n \"\"\"Setting an existing attribute\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test01_setAttrExisting...\" %\n self.__class__.__name__)\n\n array = self.h5file.root.array\n attrs = array.attrs\n\n self.h5file.enable_undo()\n setattr(attrs, 'attr_1', 11)\n self.assertTrue('attr_1' in attrs)\n self.assertEqual(attrs.attr_1, 11)\n self.h5file.undo()\n self.assertTrue('attr_1' in attrs)\n self.assertEqual(attrs.attr_1, 10)\n self.h5file.redo()\n self.assertTrue('attr_1' in attrs)\n self.assertEqual(attrs.attr_1, 11)", "metadata": "root.AttributesTestCase.test01_setAttrExisting", "header": "['class', 'AttributesTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2474 }, { "content": " def test02_delAttr(self):\n \"\"\"Removing an attribute\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test02_delAttr...\" % self.__class__.__name__)\n\n array = self.h5file.root.array\n attrs = array.attrs\n\n self.h5file.enable_undo()\n delattr(attrs, 'attr_1')\n self.assertTrue('attr_1' not in attrs)\n self.h5file.undo()\n self.assertTrue('attr_1' in attrs)\n self.assertEqual(attrs.attr_1, 10)\n self.h5file.redo()\n self.assertTrue('attr_1' not in attrs)", "metadata": "root.AttributesTestCase.test02_delAttr", "header": "['class', 'AttributesTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2496 }, { "content": " def test03_copyNodeAttrs(self):\n \"\"\"Copying an attribute set\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test03_copyNodeAttrs...\" %\n self.__class__.__name__)\n\n rattrs = self.h5file.root._v_attrs\n rattrs.attr_0 = 0\n rattrs.attr_1 = 100\n\n array = self.h5file.root.array\n attrs = array.attrs\n\n self.h5file.enable_undo()\n attrs._f_copy(self.h5file.root)\n self.assertEqual(rattrs.attr_0, 0)\n self.assertEqual(rattrs.attr_1, 10)\n self.assertEqual(rattrs.attr_2, 20)\n self.assertEqual(rattrs.attr_3, 30)\n self.h5file.undo()\n self.assertEqual(rattrs.attr_0, 0)\n self.assertEqual(rattrs.attr_1, 100)\n self.assertTrue('attr_2' not in rattrs)\n self.assertTrue('attr_3' not in rattrs)\n self.h5file.redo()\n self.assertEqual(rattrs.attr_0, 0)\n self.assertEqual(rattrs.attr_1, 10)\n self.assertEqual(rattrs.attr_2, 20)\n self.assertEqual(rattrs.attr_3, 30)", "metadata": "root.AttributesTestCase.test03_copyNodeAttrs", "header": "['class', 'AttributesTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2515 }, { "content": " def test04_replaceNode(self):\n \"\"\"Replacing a node with a rewritten attribute\"\"\"\n\n if common.verbose:\n print('\\n', '-=' * 30)\n print(\"Running %s.test04_replaceNode...\" % self.__class__.__name__)\n\n array = self.h5file.root.array\n attrs = array.attrs\n\n self.h5file.enable_undo()\n attrs.attr_1 = 11\n self.h5file.remove_node('/array')\n arr = self.h5file.create_array('/', 'array', [1])\n arr.attrs.attr_1 = 12\n self.h5file.undo()\n self.assertTrue('attr_1' in self.h5file.root.array.attrs)\n self.assertEqual(self.h5file.root.array.attrs.attr_1, 10)\n self.h5file.redo()\n self.assertTrue('attr_1' in self.h5file.root.array.attrs)\n self.assertEqual(self.h5file.root.array.attrs.attr_1, 12)", "metadata": "root.AttributesTestCase.test04_replaceNode", "header": "['class', 'AttributesTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2547 }, { "content": " def test00_hierarchy(self):\n \"\"\"Performing hierarchy operations on a not logged node.\"\"\"\n\n self.h5file.create_group('/', 'tgroup')\n self.h5file.enable_undo()\n\n # Node creation is not undone.\n arr = self.NotLoggedArray(self.h5file.root, 'test',\n [1], self._getMethodName())\n self.h5file.undo()\n self.assertTrue('/test' in self.h5file)\n\n # Node movement is not undone.\n arr.move('/tgroup')\n self.h5file.undo()\n self.assertTrue('/tgroup/test' in self.h5file)\n\n # Node removal is not undone.\n arr.remove()\n self.h5file.undo()\n self.assertTrue('/tgroup/test' not in self.h5file)", "metadata": "root.NotLoggedTestCase.test00_hierarchy", "header": "['class', 'NotLoggedTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2576 }, { "content": " def test00_create(self):\n \"\"\"Test creating a node.\"\"\"\n\n def pre():\n pass\n\n def doit(newpath):\n self.h5file.create_array(newpath, 'array', [1], createparents=True)\n self.assertTrue(join_path(newpath, 'array') in self.h5file)\n\n def post(newpath):\n self.assertTrue(join_path(newpath, 'array') not in self.h5file)\n self.basetest(doit, pre, post)", "metadata": "root.CreateParentsTestCase.test00_create", "header": "['class', 'CreateParentsTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2649 }, { "content": " def test01_move(self):\n \"\"\"Test moving a node.\"\"\"\n\n def pre():\n self.h5file.create_array('/', 'array', [1])\n\n def doit(newpath):\n self.h5file.move_node('/array', newpath, createparents=True)\n self.assertTrue('/array' not in self.h5file)\n self.assertTrue(join_path(newpath, 'array') in self.h5file)\n\n def post(newpath):\n self.assertTrue('/array' in self.h5file)\n self.assertTrue(join_path(newpath, 'array') not in self.h5file)\n self.basetest(doit, pre, post)", "metadata": "root.CreateParentsTestCase.test01_move", "header": "['class', 'CreateParentsTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2663 }, { "content": " def test02_copy(self):\n \"\"\"Test copying a node.\"\"\"\n\n def pre():\n self.h5file.create_array('/', 'array', [1])\n\n def doit(newpath):\n self.h5file.copy_node('/array', newpath, createparents=True)\n self.assertTrue(join_path(newpath, 'array') in self.h5file)\n\n def post(newpath):\n self.assertTrue(join_path(newpath, 'array') not in self.h5file)\n self.basetest(doit, pre, post)", "metadata": "root.CreateParentsTestCase.test02_copy", "header": "['class', 'CreateParentsTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2679 }, { "content": " def test03_copyChildren(self):\n \"\"\"Test copying the children of a group.\"\"\"\n\n def pre():\n g = self.h5file.create_group('/', 'group')\n self.h5file.create_array(g, 'array1', [1])\n self.h5file.create_array(g, 'array2', [1])\n\n def doit(newpath):\n self.h5file.copy_children('/group', newpath, createparents=True)\n self.assertTrue(join_path(newpath, 'array1') in self.h5file)\n self.assertTrue(join_path(newpath, 'array2') in self.h5file)\n\n def post(newpath):\n self.assertTrue(join_path(newpath, 'array1') not in self.h5file)\n self.assertTrue(join_path(newpath, 'array2') not in self.h5file)\n self.basetest(doit, pre, post)", "metadata": "root.CreateParentsTestCase.test03_copyChildren", "header": "['class', 'CreateParentsTestCase', '(', 'common', '.', 'TempFileMixin', ',', 'TestCase', ')', ':', '___EOS___']", "index": 2693 } ]

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"start_column": 8, "end_line": 501, "end_column": 58 }, { "span": "self.assertTrue(\"/otherarray2\" not in self.h5file)", "start_line": 502, "start_column": 8, "end_line": 502, "end_column": 58 }, { "span": "self.assertTrue(\"/otherarray3\" not in self.h5file)", "start_line": 503, "start_column": 8, "end_line": 503, "end_column": 58 }, { "span": "self.assertTrue(\"/otherarray4\" not in self.h5file)", "start_line": 504, "start_column": 8, "end_line": 504, "end_column": 58 }, { "span": "self.assertTrue(\"/otherarray1\" not in self.h5file)", "start_line": 536, "start_column": 8, "end_line": 536, "end_column": 58 }, { "span": "self.assertTrue(\"/otherarray2\" not in self.h5file)", "start_line": 537, "start_column": 8, "end_line": 537, "end_column": 58 }, { "span": "self.assertTrue(\"/otherarray3\" not in self.h5file)", "start_line": 538, "start_column": 8, "end_line": 538, "end_column": 58 }, { "span": "self.assertTrue('/newarray' not in self.h5file)", "start_line": 552, "start_column": 8, 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[ { "content": "def change_plotting_library(lib):\n try:\n #===========================================================================\n # Load in your plotting library here and\n # save it under the name plotting_library!\n # This is hooking the library in\n # for the usage in GPy:\n if lib not in supported_libraries:\n raise ValueError(\"Warning: Plotting library {} not recognized, currently supported libraries are: \\n {}\".format(lib, \", \".join(supported_libraries)))\n if lib == 'matplotlib':\n import matplotlib\n from .matplot_dep.plot_definitions import MatplotlibPlots\n from .matplot_dep import visualize, mapping_plots, priors_plots, ssgplvm, svig_plots, variational_plots, img_plots\n current_lib[0] = MatplotlibPlots()\n if lib == 'plotly':\n import plotly\n from .plotly_dep.plot_definitions import PlotlyPlots\n current_lib[0] = PlotlyPlots()\n if lib == 'none':\n current_lib[0] = None\n inject_plotting()\n #===========================================================================\n except (ImportError, NameError):\n config.set('plotting', 'library', 'none')\n raise\n import warnings\n warnings.warn(ImportWarning(\"You spevified {} in your configuration, but is not available. Install newest version of {} for plotting\".format(lib, lib)))", "metadata": "root.change_plotting_library", "header": "['module', '___EOS___']", "index": 7 } ]

[ { "span": "import warnings", "start_line": 32, "start_column": 8, "end_line": 32, "end_column": 23 } ]

[]

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[ { "content": "def package_dependencies():\n import core.packagemanager\n manager = core.packagemanager.get_package_manager()\n\n ret = []\n #if manager.has_package('edu.utah.sci.vistrails.vtk'):\n ret.append('edu.utah.sci.vistrails.vtk')\n #if manager.has_package('edu.utah.sci.vistrails.spreadsheet'):\n ret.append('edu.utah.sci.vistrails.spreadsheet')\n return ret", "metadata": "root.package_dependencies", "header": "['module', '___EOS___']", "index": 40 } ]

[ { "span": "manager ", "start_line": 42, "start_column": 4, "end_line": 42, "end_column": 11 } ]

[]

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[ { "content": "from PyQt4 import QtCore, QtGui\nfrom core.modules.vistrails_module import Module, ModuleError, NotCacheable\nfrom core.modules.basic_modules import Constant\nfrom packages.spreadsheet.spreadsheet_controller import spreadsheetController\nfrom packages.spreadsheet.spreadsheet_cell import QCellWidget, QCellToolBar\nfrom packages.spreadsheet.basic_widgets import SpreadsheetCell, CellLocation\nfrom packages.spreadsheet.spreadsheet_event import DisplayCellEvent\n#from cdatwrap.coreappwrap import VCSQtManager\nimport vcs\nimport genutil\nimport cdutil\nimport time\nimport api\nimport re\nimport MV2\n\n\"\"\" This file contains all of the classes related to the Vistrails Modules (the\nboxes). Eventually Variable and GraphicsMethod should be replaced by generating\nthe proper graphics method, cdms2, MV2, etc... modules \"\"\"\n\n# Index into the VCSQtManager window array so we can communicate with the\n# C++ Qt windows which the plots show up in. If this number is no longer\n# consistent with the number of C++ Qt windows due to adding or removing\n# vcs.init() calls, then when you plot, it will plot into a\n# separate window instead of in the cell and may crash.\nwindowIndex = 1 \n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Variable(Module):\n \"\"\" Get the updated transient variable \"\"\"\n \n\n\n\n", "metadata": "root.Variable", "header": "['module', '___EOS___']", "index": 27 }, { "content": " def compute(self):\n # *** IMPORTANT ***\n # Once someone figures out how to pass the tvariable object, to this\n # module none of the computation in this method is necessary \n \n # Check ports\n if not self.has_input('cdmsfile'):\n raise ModuleError(self, \"'cdmsfile' is mandatory.\")\n if not self.has_input('id'):\n raise ModuleError(self, \"'id' is mandatory.\")\n\n # Get input from ports\n cdmsfile = self.get_input('cdmsfile')\n id = self.get_input('id')\n axes = self.force_get_input('axes') # None if no input\n axesOperations = self.force_get_input('axesOperations') # None if no input\n\n # Get the variable\n varType = self.getVarType(id, cdmsfile)\n if (varType == 'variable'):\n var = cdmsfile.__call__(id)\n elif (varType == 'axis'):\n varID = self.getAxisID(id) \n axis = getattr(cdmsfile, 'axes')[varID]\n var = MV2.array(axis)\n var.setAxis(0, axis)\n elif (varType == 'weighted-axis'):\n varID, axisID = self.getVarAndAxisID(id)\n var = cdmsfile.__call__(varID) \n var = genutil.getAxisWeightByName(var, axisID)\n var.id = varID +'_' + axisID + '_weight'\n else:\n var = None\n\n # Eval the variable with the axes\n if axes is not None and var is not None:\n try:\n kwargs = eval(axes)\n var = var(**kwargs)\n except:\n raise ModuleError(self, \"Invalid 'axes' specification\", axes)\n\n # Apply axes ops to the variable\n if axesOperations is not None:\n var = self.applyAxesOperations(var, axesOperations)\n\n self.set_output('variable', var)", "metadata": "root.Variable.compute", "header": "['class', 'Variable', '(', 'Module', ')', ':', '___EOS___']", "index": 30 }, { "content": " def applyAxesOperations(self, var, axesOperations):\n \"\"\" Apply axes operations to update the slab \"\"\"\n try:\n axesOperations = eval(axesOperations)\n except:\n raise TypeError(\"Invalid string 'axesOperations'\")\n\n for axis in list(axesOperations):\n if axesOperations[axis] == 'sum':\n var = cdutil.averager(var, axis=\"(%s)\" % axis, weight='equal',\n action='sum')\n elif axesOperations[axis] == 'avg':\n var = cdutil.averager(var, axis=\"(%s)\" % axis, weight='equal')\n elif axesOperations[axis] == 'wgt':\n var = cdutil.averager(var, axis=\"(%s)\" % axis)\n elif axesOperations[axis] == 'gtm':\n var = genutil.statistics.geometricmean(var, axis=\"(%s)\" % axis)\n elif axesOperations[axis] == 'std':\n var = genutil.statistics.std(var, axis=\"(%s)\" % axis) \n \n return var", "metadata": "root.Variable.applyAxesOperations", "header": "['class', 'Variable', '(', 'Module', ')', ':', '___EOS___']", "index": 78 }, { "content": " def getVarType(self, varID, file):\n if varID in list(getattr(file, 'variables')):\n return 'variable'\n elif varID in list(getattr(file, 'axes')):\n return 'axis'\n elif re.compile('(.+)(_)(.+)(_)axis').match(varID):\n return 'axis'\n elif re.compile('(.+)(_)(.+)(_)weight').match(varID):\n return 'weighted-axis' ", "metadata": "root.Variable.getVarType", "header": "['class', 'Variable', '(', 'Module', ')', ':', '___EOS___']", "index": 100 }, { "content": " def getVarAndAxisID(self, varID):\n \"\"\" Get the varID and axisID from a string with format:\n varID_axisID_weight \"\"\"\n \n match = re.compile('(.+)(_)(.+)(_)(weight)').match(varID)\n if match:\n return (match.group(1), match.group(3))\n\n return None", "metadata": "root.Variable.getVarAndAxisID", "header": "['class', 'Variable', '(', 'Module', ')', ':', '___EOS___']", "index": 110 }, { "content": " def getAxisID(self, varID):\n \"\"\" Get the axisID from a string with format: varID_axisID_axis \"\"\"\n\n match = re.compile('(.+)(_)(.+)(_)(axis)').match(varID)\n if match:\n return match.group(3)\n\n return varID", "metadata": "root.Variable.getAxisID", "header": "['class', 'Variable', '(', 'Module', ')', ':', '___EOS___']", "index": 120 }, { "content": "class Quickplot(Variable):\n \"\"\" Quickplot is identical to Variable except we will only have a single\n quickplot module in a pipeline. \"\"\"\n", "metadata": "root.Quickplot", "header": "['module', '___EOS___']", "index": 129 }, { "content": " def foo(self):\n return", "metadata": "root.Quickplot.foo", "header": "['class', 'Quickplot', '(', 'Variable', ')', ':', '___EOS___']", "index": 133 }, { "content": "class GraphicsMethod(Module, NotCacheable):\n \"\"\" GraphicsMethod initializes the vcs canvas and gets the graphics method\n and modify it's attributes \"\"\"\n ", "metadata": "root.GraphicsMethod", "header": "['module', '___EOS___']", "index": 136 }, { "content": " def compute(self):\n # Check required input ports\n if not self.has_input('gmName'):\n return\n if not self.has_input('plotType'):\n return\n if not self.has_input('slab1'):\n return\n \n # Get required input\n gmName = self.get_input('gmName')\n plotType = self.get_input('plotType')\n\n # GraphicsMethod doesn't need slab1/slab2 as input. It can be passed\n # directly to CDATCell but I pass it to graphics method so it looks\n # nicer in the pipeline.\n slab1 = self.get_input('slab1')\n if self.has_input('slab2'):\n self.set_output('slab2', self.get_input('slab2'))\n \n # Initialize the canvas and get the graphics method\n canvas = vcs.init()\n gm = canvas.get_gm(plotType.lower(), gmName)\n\n # Modify the graphics method's attributes\n if self.has_input('color_1'):\n gm.color_1 = self.get_input('color_1')\n if self.has_input('color_2'):\n gm.color_2 = self.get_input('color_2')\n if self.has_input('level_1'):\n gm.level_1 = self.get_input('level_1')\n if self.has_input('level_2'):\n gm.level_2 = self.get_input('level_2')\n # TODO: more gm attributes ...\n\n # Add canvas / slab to output Ports\n self.set_output('slab1', slab1)\n self.set_output('canvas', canvas)", "metadata": "root.GraphicsMethod.compute", "header": "['class', 'GraphicsMethod', '(', 'Module', ',', 'NotCacheable', ')', ':', '___EOS___']", "index": 140 }, { "content": "class CDATCell(SpreadsheetCell, NotCacheable):\n ", "metadata": "root.CDATCell", "header": "['module', '___EOS___']", "index": 179 }, { "content": " def __init__(self):\n SpreadsheetCell.__init__(self)\n self.cellWidget = None", "metadata": "root.CDATCell.__init__", "header": "['class', 'CDATCell', '(', 'SpreadsheetCell', ',', 'NotCacheable', ')', ':', '___EOS___']", "index": 180 }, { "content": " def compute(self):\n \"\"\" compute() -> None\n Dispatch the vtkRenderer to the actual rendering widget\n \"\"\"\n # Check required input ports\n if self.has_input('canvas'):\n canvas = self.get_input('canvas')\n else:\n self.cellWidget = self.displayAndWait(QCDATWidget, (None,))\n self.set_output('canvas', self.cellWidget.canvas)\n return\n self.set_output('canvas', canvas)\n if not self.has_input('gmName'):\n return\n if not self.has_input('plotType'):\n return\n if not self.has_input('slab1'):\n return\n if not self.has_input('template'):\n return\n\n # Build up the argument list\n args = []\n slab1 = self.get_input('slab1')\n args.append(self.get_input('slab1'))\n if self.has_input('slab2'):\n args.append(self.get_input('slab2'))\n args.append(self.get_input('template'))\n args.append(self.get_input('plotType'))\n args.append(self.get_input('gmName'))\n\n # Build up plot keyword args ...\n kwargs = {}\n if self.has_input('continents'):\n kwargs['continents'] = self.get_input('continents')\n \n # Set the cell row / col\n self.location = CellLocation()\n if self.has_input('row'):\n self.location.row = self.get_input('row')\n if self.has_input('col'):\n self.location.col = self.get_input('col')\n\n # Plot into the cell\n inputPorts = (canvas, args, kwargs)\n self.displayAndWait(QCDATWidget, inputPorts) ", "metadata": "root.CDATCell.compute", "header": "['class', 'CDATCell', '(', 'SpreadsheetCell', ',', 'NotCacheable', ')', ':', '___EOS___']", "index": 184 }, { "content": "class QCDATWidget(QCellWidget):\n \"\"\" QCDATWidget is the spreadsheet cell widget where the plots are displayed.\n The widget interacts with the underlying C++, VCSQtManager through SIP.\n This enables QCDATWidget to get a reference to the Qt MainWindow that the\n plot will be displayed in and send signals (events) to that window widget.\n \"\"\"\n \n\n\n", "metadata": "root.QCDATWidget", "header": "['module', '___EOS___']", "index": 231 }, { "content": " def __init__(self, parent=None):\n QCellWidget.__init__(self, parent)\n self.window = None \n self.canvas = None\n self.windowIndex = self.getWindowIndex() #index to get QT Window from VCSQtManager", "metadata": "root.QCDATWidget.__init__", "header": "['class', 'QCDATWidget', '(', 'QCellWidget', ')', ':', '___EOS___']", "index": 238 }, { "content": " def getWindowIndex(self):\n \"\"\" Return the index into the VCSQtManager's array of Qt Windows which\n plots will be displayed in.\n \"\"\"\n global windowIndex\n\n windowIndex += 1\n maxWindows = 8\n if windowIndex > maxWindows:\n windowIndex = 1\n return windowIndex", "metadata": "root.QCDATWidget.getWindowIndex", "header": "['class', 'QCDATWidget', '(', 'QCellWidget', ')', ':', '___EOS___']", "index": 244 }, { "content": " def updateContents(self, inputPorts):\n \"\"\" Get the vcs canvas, setup the cell's layout, and plot \"\"\" \n spreadsheetWindow = spreadsheetController.findSpreadsheetWindow()\n spreadsheetWindow.setUpdatesEnabled(False)\n\n # Set the canvas\n self.canvas = inputPorts[0]\n if self.canvas is None:\n self.canvas = vcs.init()\n self.canvas.clear()\n\n # Place the mainwindow that the plot will be displayed in, into this\n # cell widget's layout\n self.window = VCSQtManager.window(self.windowIndex)\n layout = QtGui.QVBoxLayout()\n layout.addWidget(self.window)\n self.setLayout(layout) \n\n # Plot\n if len(inputPorts) > 2:\n args = inputPorts[1]\n kwargs = inputPorts[2]\n self.canvas.plot(*args, **kwargs)\n\n spreadsheetWindow.setUpdatesEnabled(True)", "metadata": "root.QCDATWidget.updateContents", "header": "['class', 'QCDATWidget', '(', 'QCellWidget', ')', ':', '___EOS___']", "index": 256 }, { "content": " def deleteLater(self):\n \"\"\" deleteLater() -> None \n Make sure to free render window resource when\n deallocating. Overriding PyQt deleteLater to free up\n resources\n \"\"\"\n self.canvas = None\n QCellWidget.deleteLater(self) ", "metadata": "root.QCDATWidget.deleteLater", "header": "['class', 'QCDATWidget', '(', 'QCellWidget', ')', ':', '___EOS___']", "index": 282 } ]

[ { "span": "from PyQt4 import QtCore, QtGui", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 31 }, { "span": "from core.modules.basic_modules import Constant", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 47 }, { "span": "from packages.spreadsheet.spreadsheet_cell import QCellWidget, QCellToolBar", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 75 }, { "span": "from packages.spreadsheet.spreadsheet_event import DisplayCellEvent", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 67 }, { "span": "import time", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 11 }, { "span": "import api", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 10 } ]

[]

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[ { "content": "#!/usr/bin/python\n#\n# Perforce Defect Tracking Integration Project\n# <http://www.ravenbrook.com/project/p4dti/>\n#\n# COVERAGE.PY -- COVERAGE TESTING\n#\n# Gareth Rees, Ravenbrook Limited, 2001-12-04\n# Ned Batchelder, 2004-12-12\n# http://nedbatchelder.com/code/modules/coverage.html\n#\n#\n# 1. INTRODUCTION\n#\n# This module provides coverage testing for Python code.\n#\n# The intended readership is all Python developers.\n#\n# This document is not confidential.\n#\n# See [GDR 2001-12-04a] for the command-line interface, programmatic\n# interface and limitations. See [GDR 2001-12-04b] for requirements and\n# design.\n\nr\"\"\"Usage:\n\ncoverage.py -x [-p] MODULE.py [ARG1 ARG2 ...]\n Execute module, passing the given command-line arguments, collecting\n coverage data. With the -p option, write to a temporary file containing\n the machine name and process ID.\n\ncoverage.py -e\n Erase collected coverage data.\n\ncoverage.py -waitfor\n it's the same as -r -m, but...\n goes to a raw_input() and waits for the files that should be executed...\n\ncoverage.py -c\n Collect data from multiple coverage files (as created by -p option above)\n and store it into a single file representing the union of the coverage.\n\ncoverage.py -r [-m] [-o dir1,dir2,...] FILE1 FILE2 ...\n Report on the statement coverage for the given files. With the -m\n option, show line numbers of the statements that weren't executed.\n\ncoverage.py -a [-d dir] [-o dir1,dir2,...] FILE1 FILE2 ...\n Make annotated copies of the given files, marking statements that\n are executed with > and statements that are missed with !. With\n the -d option, make the copies in that directory. Without the -d\n option, make each copy in the same directory as the original.\n\n-o dir,dir2,...\n Omit reporting or annotating files when their filename path starts with\n a directory listed in the omit list.\n e.g. python coverage.py -i -r -o c:\\python23,lib\\enthought\\traits\n\nCoverage data is saved in the file .coverage by default. Set the\nCOVERAGE_FILE environment variable to save it somewhere else.\"\"\"\n\n__version__ = \"2.78.20070930\" # see detailed history at the end of this file.\n\nimport compiler\nimport compiler.visitor\nimport glob\nimport os\nimport re\nimport string\nimport symbol\nimport sys\nimport threading\nimport token\nimport types\nimport email\nfrom socket import gethostname\n\n# Python version compatibility\ntry:\n strclass = basestring # new to 2.3\nexcept:\n strclass = str\n\n# 2. IMPLEMENTATION\n#\n# This uses the \"singleton\" pattern.\n#\n# The word \"morf\" means a module object (from which the source file can\n# be deduced by suitable manipulation of the __file__ attribute) or a\n# filename.\n#\n# When we generate a coverage report we have to canonicalize every\n# filename in the coverage dictionary just in case it refers to the\n# module we are reporting on. It seems a shame to throw away this\n# information so the data in the coverage dictionary is transferred to\n# the 'cexecuted' dictionary under the canonical filenames.\n#\n# The coverage dictionary is called \"c\" and the trace function \"t\". The\n# reason for these short names is that Python looks up variables by name\n# at runtime and so execution time depends on the length of variables!\n# In the bottleneck of this application it's appropriate to abbreviate\n# names to increase speed.\n\n\n\n\n\n\n\n\n# Module functions call methods in the singleton object.\n\n\n\n\n\n\n\n\n\n\n\n\n\n# Command-line interface.\nif __name__ == '__main__':\n# it's the same as -r -m, but...\n# goes to a raw_input() and waits for the files that should be executed...\n\n global cache_location #let's set the cache location now...\n cache_location = sys.argv[1] #first parameter is the cache location.\n sys.argv.remove(cache_location)\n print cache_location\n \n global the_coverage\n # Singleton object.\n the_coverage = coverage()\n\n if len(sys.argv) == 2:\n \n if '-waitfor' == sys.argv[1]:\n sys.argv.remove('-waitfor')\n sys.argv.append('-r')\n sys.argv.append('-m')\n \n #second gets the files to be executed\n s = raw_input()\n s = s.replace('\\r', '')\n s = s.replace('\\n', '')\n files = s.split('|')\n files = [v for v in files if len(v) > 0]\n sys.argv += files\n \n if '-x' in sys.argv:\n # Save coverage data when Python exits. (The atexit module wasn't\n # introduced until Python 2.0, so use sys.exitfunc when it's not\n # available.)\n try:\n import atexit\n atexit.register(the_coverage.save)\n except ImportError:\n sys.exitfunc = the_coverage.save\n \n the_coverage.command_line(sys.argv[1:])\n\n\n# A. REFERENCES\n#\n# [GDR 2001-12-04a] \"Statement coverage for Python\"; Gareth Rees;\n# Ravenbrook Limited; 2001-12-04;\n# <http://www.nedbatchelder.com/code/modules/rees-coverage.html>.\n#\n# [GDR 2001-12-04b] \"Statement coverage for Python: design and\n# analysis\"; Gareth Rees; Ravenbrook Limited; 2001-12-04;\n# <http://www.nedbatchelder.com/code/modules/rees-design.html>.\n#\n# [van Rossum 2001-07-20a] \"Python Reference Manual (releae 2.1.1)\";\n# Guide van Rossum; 2001-07-20;\n# <http://www.python.org/doc/2.1.1/ref/ref.html>.\n#\n# [van Rossum 2001-07-20b] \"Python Library Reference\"; Guido van Rossum;\n# 2001-07-20; <http://www.python.org/doc/2.1.1/lib/lib.html>.\n#\n#\n# B. DOCUMENT HISTORY\n#\n# 2001-12-04 GDR Created.\n#\n# 2001-12-06 GDR Added command-line interface and source code\n# annotation.\n#\n# 2001-12-09 GDR Moved design and interface to separate documents.\n#\n# 2001-12-10 GDR Open cache file as binary on Windows. Allow\n# simultaneous -e and -x, or -a and -r.\n#\n# 2001-12-12 GDR Added command-line help. Cache analysis so that it\n# only needs to be done once when you specify -a and -r.\n#\n# 2001-12-13 GDR Improved speed while recording. Portable between\n# Python 1.5.2 and 2.1.1.\n#\n# 2002-01-03 GDR Module-level functions work correctly.\n#\n# 2002-01-07 GDR Update sys.path when running a file with the -x option,\n# so that it matches the value the program would get if it were run on\n# its own.\n#\n# 2004-12-12 NMB Significant code changes.\n# - Finding executable statements has been rewritten so that docstrings and\n# other quirks of Python execution aren't mistakenly identified as missing\n# lines.\n# - Lines can be excluded from consideration, even entire suites of lines.\n# - The filesystem cache of covered lines can be disabled programmatically.\n# - Modernized the code.\n#\n# 2004-12-14 NMB Minor tweaks. Return 'analysis' to its original behavior\n# and add 'analysis2'. Add a global for 'annotate', and factor it, adding\n# 'annotate_file'.\n#\n# 2004-12-31 NMB Allow for keyword arguments in the module global functions.\n# Thanks, Allen.\n#\n# 2005-12-02 NMB Call threading.settrace so that all threads are measured.\n# Thanks Martin Fuzzey. Add a file argument to report so that reports can be \n# captured to a different destination.\n#\n# 2005-12-03 NMB coverage.py can now measure itself.\n#\n# 2005-12-04 NMB Adapted Greg Rogers' patch for using relative filenames,\n# and sorting and omitting files to report on.\n#\n# 2006-07-23 NMB Applied Joseph Tate's patch for function decorators.\n#\n# 2006-08-21 NMB Applied Sigve Tjora and Mark van der Wal's fixes for argument\n# handling.\n#\n# 2006-08-22 NMB Applied Geoff Bache's parallel mode patch.\n#\n# 2006-08-23 NMB Refactorings to improve testability. Fixes to command-line\n# logic for parallel mode and collect.\n#\n# 2006-08-25 NMB \"#pragma: nocover\" is excluded by default.\n#\n# 2006-09-10 NMB Properly ignore docstrings and other constant expressions that\n# appear in the middle of a function, a problem reported by Tim Leslie.\n# Minor changes to avoid lint warnings.\n#\n# 2006-09-17 NMB coverage.erase() shouldn't clobber the exclude regex.\n# Change how parallel mode is invoked, and fix erase() so that it erases the\n# cache when called programmatically.\n#\n# 2007-07-21 NMB In reports, ignore code executed from strings, since we can't\n# do anything useful with it anyway.\n# Better file handling on Linux, thanks Guillaume Chazarain.\n# Better shell support on Windows, thanks Noel O'Boyle.\n# Python 2.2 support maintained, thanks Catherine Proulx.\n#\n# 2007-07-22 NMB Python 2.5 now fully supported. The method of dealing with\n# multi-line statements is now less sensitive to the exact line that Python\n# reports during execution. Pass statements are handled specially so that their\n# disappearance during execution won't throw off the measurement.\n#\n# 2007-07-23 NMB Now Python 2.5 is *really* fully supported: the body of the\n# new with statement is counted as executable.\n#\n# 2007-07-29 NMB Better packaging.\n#\n# 2007-09-30 NMB Don't try to predict whether a file is Python source based on\n# the extension. Extensionless files are often Pythons scripts. Instead, simply\n# parse the file and catch the syntax errors. Hat tip to Ben Finney.\n\n# C. COPYRIGHT AND LICENCE\n#\n# Copyright 2001 Gareth Rees. All rights reserved.\n# Copyright 2004-2007 Ned Batchelder. All rights reserved.\n#\n# Redistribution and use in source and binary forms, with or without\n# modification, are permitted provided that the following conditions are\n# met:\n#\n# 1. Redistributions of source code must retain the above copyright\n# notice, this list of conditions and the following disclaimer.\n#\n# 2. Redistributions in binary form must reproduce the above copyright\n# notice, this list of conditions and the following disclaimer in the\n# documentation and/or other materials provided with the\n# distribution.\n#\n# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS\n# \"AS IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT\n# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR\n# A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT\n# HOLDERS AND CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,\n# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,\n# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS\n# OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND\n# ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR\n# TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE\n# USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH\n# DAMAGE.\n#\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": " def restore_file(self, file_name):\n try:\n cache = open(file_name, 'rb')\n import marshal\n cexecuted = marshal.load(cache)\n cache.close()\n if isinstance(cexecuted, types.DictType):\n return cexecuted\n else:\n return {}\n except:\n return {}", "metadata": "root.coverage.restore_file", "header": "['class', 'coverage', ':', '___NEWLINE___', '# Name of the cache file (unless environment variable is set).', '___NL___', '___EOS___']", "index": 493 }, { "content": " def is_string_constant(self, tree):\n try:\n return tree[0] == symbol.stmt and tree[1][1][1][0] == symbol.expr_stmt\n except:\n return False", "metadata": "root.coverage.is_string_constant", "header": "['class', 'coverage', ':', '___NEWLINE___', '# Name of the cache file (unless environment variable is set).', '___NL___', '___EOS___']", "index": 627 }, { "content": " def is_pass_stmt(self, tree):\n try:\n return tree[0] == symbol.stmt and tree[1][1][1][0] == symbol.pass_stmt\n except:\n return False", "metadata": "root.coverage.is_pass_stmt", "header": "['class', 'coverage', ':', '___NEWLINE___', '# Name of the cache file (unless environment variable is set).', '___NL___', '___EOS___']", "index": 633 }, { "content": " def report(self, morfs, show_missing=1, ignore_errors=0, file=None, omit_prefixes=[]):\n '''\n @param morfs: list of files that we want to get information from\n \n The report is created in the following format:\n Name Stmts Exec Cover Missing\n ---------------------------------------------\n file_to_test @ 7 @ 6 @ 85% @ 8\n file_to_test2 @ 13 @ 9 @ 69% @ 12-14, 17\n ---------------------------------------------\n TOTAL 20 15 75% \n \n @returns a list of tuples in the format ('file_to_test2', 13, 9, 69.230769230769226, '12-14, 17')\n @note: 'file' param was 'out'\n '''\n \n \n if not isinstance(morfs, types.ListType):\n morfs = [morfs]\n # On windows, the shell doesn't expand wildcards. Do it here.\n globbed = []\n for morf in morfs:\n if isinstance(morf, strclass):\n globbed.extend(glob.glob(morf))\n else:\n globbed.append(morf)\n morfs = globbed\n \n morfs = self.filter_by_prefix(morfs, omit_prefixes)\n morfs.sort(self.morf_name_compare)\n\n max_name = max([5, ] + map(len, map(self.morf_name, morfs)))\n fmt_name = \"%%- %ds \" % max_name\n fmt_err = fmt_name + \"%s: %s\"\n header = fmt_name % \"Name\" + \" Stmts Exec Cover\"\n fmt_coverage = fmt_name + \"@% 6d @% 6d @% 5d%%\"\n if show_missing:\n header = header + \" Missing\"\n fmt_coverage = fmt_coverage + \"@ %s\"\n if not file:\n file = sys.stdout\n print >> file, header\n print >> file, \"-\" * len(header)\n total_statements = 0\n total_executed = 0\n for morf in morfs:\n name = self.morf_name(morf)\n try:\n _, statements, _, missing, readable = self.analysis2(morf)\n n = len(statements)\n m = n - len(missing)\n if n > 0:\n pc = 100.0 * m / n\n else:\n pc = 100.0\n args = (morf, n, m, pc)\n if show_missing:\n args = args + (readable,)\n print >> file, fmt_coverage % args\n total_statements = total_statements + n\n total_executed = total_executed + m\n except KeyboardInterrupt: #pragma: no cover\n raise\n except:\n if not ignore_errors:\n typ, msg = sys.exc_info()[:2]\n print >> file, fmt_err % (morf, typ, msg)\n if len(morfs) > 1:\n print >> file, \"-\" * len(header)\n if total_statements > 0:\n pc = 100.0 * total_executed / total_statements\n else:\n pc = 100.0\n args = (\"TOTAL\", total_statements, total_executed, pc)\n if show_missing:\n args = args + (\"\",)\n print >> file, fmt_coverage % args", "metadata": "root.coverage.report", "header": "['class', 'coverage', ':', '___NEWLINE___', '# Name of the cache file (unless environment variable is set).', '___NL___', '___EOS___']", "index": 808 }, { "content": " def annotate(self, morfs, directory=None, ignore_errors=0, omit_prefixes=[]):\n morfs = self.filter_by_prefix(morfs, omit_prefixes)\n for morf in morfs:\n try:\n filename, statements, excluded, missing, _ = self.analysis2(morf)\n self.annotate_file(filename, statements, excluded, missing, directory)\n except KeyboardInterrupt:\n raise\n except:\n if not ignore_errors:\n raise", "metadata": "root.coverage.annotate", "header": "['class', 'coverage', ':', '___NEWLINE___', '# Name of the cache file (unless environment variable is set).', '___NL___', '___EOS___']", "index": 891 } ]

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[ { "content": " def test_import_remove_system(self):\n # export, add one system, assert the sytem was added, remove it, assert\n # it was removed\n sblob = self.get_service(self.s1.iql_stmt())\n\n # create\n s = create_fake_host(hostname='hihihi.mozilla.com')\n\n # add\n sblob['services'][0]['systems'].append(s.hostname)\n\n # new host shouldn't exist in the service\n self.assertFalse(self.s1.systems.filter(hostname=s.hostname).exists())\n\n # import\n _, resp = self.import_services(sblob)\n self.assertEqual(resp.status_code, 200, resp.content)\n\n # new host should now exist in the service\n self.assertTrue(self.s1.systems.filter(hostname=s.hostname).exists())\n\n # refresh the blob for good measure\n sblob = self.get_service(self.s1.iql_stmt())\n\n # make sure the system's hostname is in the blob (this may be\n # redundant)\n self.assertTrue(s.hostname in sblob['services'][0]['systems'])\n # remove the host form the export blob\n sblob['services'][0]['systems'].remove(s.hostname)\n\n # import the blob\n _, resp = self.import_services(sblob)\n self.assertEqual(resp.status_code, 200, resp.content)\n\n # make sure it was removed\n self.assertFalse(self.s1.systems.filter(hostname=s.hostname).exists())", "metadata": "root.ServiceAPITests.test_import_remove_system", "header": "['class', 'ServiceAPITests', '(', 'BaseServiceTests', ',', 'TestCase', ')', ':', '___EOS___']", "index": 223 }, { "content": " def test_add_deps(self):\n s4 = Service.objects.create(name='foo', site=self.site)\n sblob = self.get_service(s4.iql_stmt())\n sblob['services'][0]['depends_on'] = [\n self.s1.iql_stmt(),\n self.s2.iql_stmt(),\n self.s3.iql_stmt()\n ]\n\n # import the blob\n _, resp = self.import_services(sblob)\n self.assertEqual(resp.status_code, 200, resp.content)\n\n pk_list = map(lambda d: d.provider.pk, s4.providers.all())\n self.assertTrue(self.s1.pk in pk_list)\n self.assertTrue(self.s2.pk in pk_list)\n self.assertTrue(self.s3.pk in pk_list)", "metadata": "root.ServiceAPITests.test_add_deps", "header": "['class', 'ServiceAPITests', '(', 'BaseServiceTests', ',', 'TestCase', ')', ':', '___EOS___']", "index": 260 }, { "content": " def test_import_remove_add_dependant_service(self):\n # This test does: export all state, remove a dep from s1, import,\n # ensure the remove worked, add a dep to s1, import, make sure the\n # add worked\n\n # get an export so we can play with it\n sblob = self.get_service(self.s1.iql_stmt())\n\n # remember how many deps we started with\n old_dep_count = Dependency.objects.count()\n\n self.assertEqual(\n 2, len(sblob['services'][0]['depends_on'])\n )\n # remove a dep\n sblob['services'][0]['depends_on'].remove(self.s2.iql_stmt())\n # Make sure the s3 service is still there\n self.assertTrue(\n self.s3.iql_stmt() in sblob['services'][0]['depends_on']\n )\n\n # import the new state\n _, resp = self.import_services(sblob)\n self.assertEqual(resp.status_code, 200, resp.content)\n\n # refresh state\n sblob = self.get_service(self.s1.iql_stmt())\n\n # we should only see one dep now\n self.assertEqual(\n 1, len(sblob['services'][0]['depends_on'])\n )\n\n # make sure we deleted the right one. the old dep should still be there\n self.assertTrue(\n self.s3.iql_stmt() in sblob['services'][0]['depends_on']\n )\n\n # Make sure we only deleted one dep\n new_dep_count = Dependency.objects.count()\n self.assertEqual(\n old_dep_count - 1, new_dep_count,\n \"It doesn't look like a dependency was deleted\"\n )\n\n # add back the dep\n sblob['services'][0]['depends_on'].append(self.s2.iql_stmt())\n\n # import the new state\n _, resp = self.import_services(sblob)\n self.assertEqual(resp.status_code, 200, resp.content)\n\n # refresh state\n sblob = self.get_service(self.s1.iql_stmt())\n\n # ensure the new dep is there\n self.assertTrue(\n self.s2.iql_stmt() in sblob['services'][0]['depends_on']\n )", "metadata": "root.ServiceAPITests.test_import_remove_add_dependant_service", "header": "['class', 'ServiceAPITests', '(', 'BaseServiceTests', ',', 'TestCase', ')', ':', '___EOS___']", "index": 278 } ]

[ { "span": "self.assertTrue(s.hostname in sblob['services'][0]['systems'])", "start_line": 249, "start_column": 8, "end_line": 249, "end_column": 70 }, { "span": "self.assertTrue(self.s1.pk in pk_list)", "start_line": 274, "start_column": 8, "end_line": 274, "end_column": 46 }, { "span": "self.assertTrue(self.s2.pk in pk_list)", "start_line": 275, "start_column": 8, "end_line": 275, "end_column": 46 }, { "span": "self.assertTrue(self.s3.pk in pk_list)", "start_line": 276, "start_column": 8, "end_line": 276, "end_column": 46 }, { "span": "self.assertTrue(\n self.s3.iql_stmt() in sblob['services'][0]['depends_on']\n )", "start_line": 295, "start_column": 8, "end_line": 297, "end_column": 9 }, { "span": "self.assertTrue(\n self.s3.iql_stmt() in sblob['services'][0]['depends_on']\n )", "start_line": 312, "start_column": 8, "end_line": 314, "end_column": 9 }, { "span": "self.assertTrue(\n self.s2.iql_stmt() in sblob['services'][0]['depends_on']\n )", "start_line": 334, "start_column": 8, "end_line": 336, "end_column": 9 } ]

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[ { "content": "def createDaemon():\n \"\"\"Detach a process from the controlling terminal and run it in the\n background as a daemon.\n \"\"\"\n\n try:\n # Fork a child process so the parent can exit. This returns control to\n # the command-line or shell. It also guarantees that the child will not\n # be a process group leader, since the child receives a new process ID\n # and inherits the parent's process group ID. This step is required\n # to insure that the next call to os.setsid is successful.\n pid = os.fork()\n except OSError, e:\n raise Exception, \"%s [%d]\" % (e.strerror, e.errno)\n\n if (pid == 0): # The first child.\n # To become the session leader of this new session and the process group\n # leader of the new process group, we call os.setsid(). The process is\n # also guaranteed not to have a controlling terminal.\n os.setsid()\n\n # Is ignoring SIGHUP necessary?\n #\n # It's often suggested that the SIGHUP signal should be ignored before\n # the second fork to avoid premature termination of the process. The\n # reason is that when the first child terminates, all processes, e.g.\n # the second child, in the orphaned group will be sent a SIGHUP.\n #\n # \"However, as part of the session management system, there are exactly\n # two cases where SIGHUP is sent on the death of a process:\n #\n # 1) When the process that dies is the session leader of a session that\n # is attached to a terminal device, SIGHUP is sent to all processes\n # in the foreground process group of that terminal device.\n # 2) When the death of a process causes a process group to become\n # orphaned, and one or more processes in the orphaned group are\n # stopped, then SIGHUP and SIGCONT are sent to all members of the\n # orphaned group.\" [2]\n #\n # The first case can be ignored since the child is guaranteed not to have\n # a controlling terminal. The second case isn't so easy to dismiss.\n # The process group is orphaned when the first child terminates and\n # POSIX.1 requires that every STOPPED process in an orphaned process\n # group be sent a SIGHUP signal followed by a SIGCONT signal. Since the\n # second child is not STOPPED though, we can safely forego ignoring the\n # SIGHUP signal. In any case, there are no ill-effects if it is ignored.\n #\n # import signal # Set handlers for asynchronous events.\n # signal.signal(signal.SIGHUP, signal.SIG_IGN)\n\n try:\n # Fork a second child and exit immediately to prevent zombies. This\n # causes the second child process to be orphaned, making the init\n # process responsible for its cleanup. And, since the first child is\n # a session leader without a controlling terminal, it's possible for\n # it to acquire one by opening a terminal in the future (System V-\n # based systems). This second fork guarantees that the child is no\n # longer a session leader, preventing the daemon from ever acquiring\n # a controlling terminal.\n pid = os.fork() # Fork a second child.\n except OSError, e:\n raise Exception, \"%s [%d]\" % (e.strerror, e.errno)\n\n if (pid == 0): # The second child.\n # Since the current working directory may be a mounted filesystem, we\n # avoid the issue of not being able to unmount the filesystem at\n # shutdown time by changing it to the root directory.\n os.chdir(WORKDIR)\n # We probably don't want the file mode creation mask inherited from\n # the parent, so we give the child complete control over permissions.\n os.umask(UMASK)\n else:\n # exit() or _exit()? See below.\n os._exit(0) # Exit parent (the first child) of the second child.\n else:\n # exit() or _exit()?\n # _exit is like exit(), but it doesn't call any functions registered\n # with atexit (and on_exit) or any registered signal handlers. It also\n # closes any open file descriptors. Using exit() may cause all stdio\n # streams to be flushed twice and any temporary files may be unexpectedly\n # removed. It's therefore recommended that child branches of a fork()\n # and the parent branch(es) of a daemon use _exit().\n os._exit(0) # Exit parent of the first child.\n\n # Close all open file descriptors. This prevents the child from keeping\n # open any file descriptors inherited from the parent. There is a variety\n # of methods to accomplish this task. Three are listed below.\n #\n # Try the system configuration variable, SC_OPEN_MAX, to obtain the maximum\n # number of open file descriptors to close. If it doesn't exists, use\n # the default value (configurable).\n #\n # try:\n # maxfd = os.sysconf(\"SC_OPEN_MAX\")\n # except (AttributeError, ValueError):\n # maxfd = MAXFD\n #\n # OR\n #\n # if (os.sysconf_names.has_key(\"SC_OPEN_MAX\")):\n # maxfd = os.sysconf(\"SC_OPEN_MAX\")\n # else:\n # maxfd = MAXFD\n #\n # OR\n #\n # Use the getrlimit method to retrieve the maximum file descriptor number\n # that can be opened by this process. If there is not limit on the\n # resource, use the default value.\n #\n import resource # Resource usage information.\n maxfd = resource.getrlimit(resource.RLIMIT_NOFILE)[1]\n if (maxfd == resource.RLIM_INFINITY):\n maxfd = MAXFD\n \n # FIXME: this breaks our tpxmld, so it's commented for now //kll\n # Iterate through and close all file descriptors.\n# for fd in range(0, maxfd):\n# try:\n# os.close(fd)\n# except OSError: # ERROR, fd wasn't open to begin with (ignored)\n# pass\n\n # Redirect the standard I/O file descriptors to the specified file. Since\n # the daemon has no controlling terminal, most daemons redirect stdin,\n # stdout, and stderr to /dev/null. This is done to prevent side-effects\n # from reads and writes to the standard I/O file descriptors.\n\n # This call to open is guaranteed to return the lowest file descriptor,\n # which will be 0 (stdin), since it was closed above.\n os.open(REDIRECT_TO, os.O_RDWR) # standard input (0)\n\n # Duplicate standard input to standard output and standard error.\n os.dup2(0, 1) # standard output (1)\n os.dup2(0, 2) # standard error (2)\n\n return(0)", "metadata": "root.createDaemon", "header": "['module', '___EOS___']", "index": 27 }, { "content": "def drop_privileges(uid_name='nobody', gid_name='nogroup'):\n if os.getuid() != 0:\n raise Exception(\"non-root user cannot drop privileges\")\n\n import pwd, grp\n # Get the uid/gid from the name\n uid = pwd.getpwnam(uid_name).pw_uid\n gid = grp.getgrnam(gid_name).gr_gid\n\n # Remove group privileges\n os.setgroups([])\n\n # Try setting the new uid/gid\n os.setgid(gid)\n os.setuid(uid)\n\n # Ensure a very conservative umask\n old_umask = os.umask(077)", "metadata": "root.drop_privileges", "header": "['module', '___EOS___']", "index": 167 } ]

[ { "span": "maxfd ", "start_line": 140, "start_column": 6, "end_line": 140, "end_column": 11 }, { "span": "old_umask ", "start_line": 184, "start_column": 4, "end_line": 184, "end_column": 13 } ]

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[ { "content": "#------------------------------------------------------------------------------\n# Copyright 2014 Esri\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n#==============================================================================\n#Name: PortalContentPost.py\n# \n#Purpose: Publishes portal content that was extracted with the\n# PortalContentExtract.py script.\n#\n#==============================================================================\nimport os, sys\n\n# Add \"Root folder\"\\SupportFiles to sys path inorder to import\n# modules in subfolder\nsupportFilesPath = os.path.join(\n os.path.dirname(\n os.path.dirname(os.path.dirname(sys.argv[0]))), \"SupportFiles\")\nsys.path.append(supportFilesPath)\n\nimport portalpy\nimport json\nimport urlparse\nimport types\nimport shutil\nfrom datetime import datetime, timedelta\nfrom portalpy import Portal, parse_hostname, portal_time, WebMap, normalize_url, unpack, TEXT_BASED_ITEM_TYPES\nfrom portalpy.provision import load_items, load_item\nfrom Utilities import findInFile, editFiles\nimport logging\nimport copy\nfrom Utilities import findFilePath\n\nlogging.basicConfig()\n\n# For now hard-code the server name of the source ArcGIS Server machine\nsource_hostname = \"my_source_portal.domain\"\nnew_hostname = \"\"\nnew_port = None #Use 6080 or None\n\nhostname_map = {}\n\nDEBUG = False\n\ntitleBreak = \"=====================================================================================\"\nsectionBreak = \"------------------------------------------------------------------------------------\"\nsectionBreak2 = \"--------------------\"\nportal_processing = \"POST\"\nportalLogFolder = \"PortalPostLogs\"\nusers = {}\n\n#track stored IDs to new IDs when posting groups\noriginGroupToDestGroups = {}\n\n#EL track new group id and the group name\ndestGroupID_GroupName = {}\n\n# Store original item id and new item id\norigIDToNewID = {}\n\n \n \n\n\n \n#POST\n \n\n \n \n\n\n\n\n\n\n\n\n\n\n \n\n\n\n\n\n\n \n \n \n\n\n\n\n\n\n\n\n\n\nif __name__ == \"__main__\":\n main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def main():\n\n scriptName = sys.argv[0]\n\n specified_users = None\n #specified_ops_types = None\n specified_groups = None\n id_mapping_file = None\n \n # ---------------------------------------------------------------------\n # Check arguments\n # --------------------------------------------------------------------- \n if len(sys.argv) < 5:\n print '\\n' + scriptName + ' <PortalURL> <AdminUser> <AdminPassword> ' + \\\n '<ContentFolderPath> {UsersToPost} {GroupsToPost} {IdMappingFile}'\n print '\\nWhere:'\n print '\\n\\t<PortalURL> (required): URL of Portal to post content (i.e. https://fully_qualified_domain_name/arcgis)'\n \n print '\\n\\t<AdminUser> (required): Portal user that has administrator role.'\n \n print '\\n\\t<AdminPassword> (required): Password for AdminUser.'\n \n print '\\n\\t<ContentFolderPath> (required): Folder path containing portal content to post.'\n \n print '\\n\\t{UsersToPost} (optional):'\n print '\\t\\t-By default, content for all users is posted'\n print '\\t\\t-Specify # placeholder character if you want to post content for all users and you are'\n print '\\t\\t specifying {GroupsToPost} values'\n print '\\t\\t-To post content for only specific users specify comma delimited list of users, i.e. user1,user2,...'\n print '\\t\\t-To post content for ALL users except specific users, specify comma delimited '\n print '\\t\\t list of users to exclude with \"-\" prefix, i.e. -user1,user2,...'\n print '\\t\\t-NOTE: Users names must match the \"SourceUserName\" values in the <ContentFolderPath>\\userfile.txt file.'\n \n print '\\n\\t{GroupsToPost} (optional):'\n print '\\t\\t-To post content shared with specific portal groups specify a pipe \"|\" delimited list of groups using the syntax \"GroupOwner:GroupTitle|GroupOwner:GroupTitle|...\".'\n print '\\t\\t-Specify # placeholder character if you do not want to use this parameter and need to specify the {IdMappingFile} parameter value.'\n print '\\t\\t-NOTE: GroupOwner and GroupTitle values are case sensitive.'\n print '\\t\\t-NOTE: Parameter value MUST be surrounded by double-quotes.'\n \n print '\\n\\t{IdMappingFile} (optional): JSON file containing mapping between source and target portal item ids.'\n print '\\t\\t-Provides \"overwrite\" capability. If IdMappingFile is specified, the script will'\n print '\\t\\t update any item that already exists; items that do not exist will be added.'\n \n print '\\n\\tNOTES:'\n print '\\t\\t(1) To include spaces in any of the parameter lists, surround the list with double-quotes,'\n print '\\t\\t i.e., \"value1, value2, ...\"'\n \n print '\\n\\t\\t(2) Replacement of portal item URLs:'\n print '\\t\\t\\t-This script will replace the host names in URLs in service, webmap and operation view items; '\n print '\\t\\t\\t the script is hardcoded to replace the source hostname \"' + source_hostname + '\" with the '\n print '\\t\\t\\t hostname of the target portal server <PortalURL>; i.e., this script assumes that the target'\n print '\\t\\t\\t ArcGIS Server is installed on the target portal machine.'\n sys.exit(1)\n \n \n # Set variables from script parameters\n target_portal_address = sys.argv[1]\n adminuser = sys.argv[2]\n adminpassword = sys.argv[3]\n contentpath = sys.argv[4]\n if len(sys.argv) > 5:\n specified_users = sys.argv[5]\n if len(sys.argv) > 6:\n specified_groups = sys.argv[6]\n specified_groups = [group.strip() for group in specified_groups.split('|')]\n if len(sys.argv) > 7:\n id_mapping_file = sys.argv[7]\n if len(sys.argv) > 8:\n print \"You entered too many script parameters.\"\n sys.exit(1)\n \n if DEBUG:\n print \"target_portal_address: \" + str(target_portal_address)\n print \"adminuser: \" + str(adminuser)\n print \"adminpassword: \" + str(adminpassword)\n print \"contentpath: \" + str(contentpath)\n if specified_users:\n print \"specifiedUsers: \" + str(specified_users)\n if specified_groups:\n print \"specifiedOpsTypes: \" + str(specified_groups)\n if id_mapping_file:\n print \"id_mapping_file: \" + str(id_mapping_file)\n \n \n # Check if specified content folder exists.\n if not val_arg_content_path(contentpath):\n print \"Parameter <ContentFolderPath>: folder '\" + contentpath + \"' does not exist.\"\n sys.exit(1)\n \n # Check if specified users are valid\n users = val_arg_users(specified_users, contentpath)\n \n if DEBUG:\n print \"Users to publish: \" + str(users.keys())\n \n # Check if specified id mapping file exists\n if id_mapping_file:\n if not os.path.exists(id_mapping_file):\n print \"Parameter {IdMappingFile}: folder '\" + id_mapping_file + \"' does not exist.\"\n \n # Extract target ArcGIS Server hostname from target portal URL;\n # NOTE: this script assumes that the ArcGIS Server is installed\n # on the same machine as Portal for ArcGIS\n new_hostname = parse_hostname(target_portal_address)\n hostname_map = {source_hostname: new_hostname}\n \n # Publish content to target portal\n publish_portal(target_portal_address, contentpath, adminuser, adminpassword, users, hostname_map, specified_groups, id_mapping_file)\n \n os.chdir(contentpath)", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 69 }, { "content": "def print_script_header(portal, portal_processing, users, specified_groups):\n print titleBreak\n print \" Portal Content \" + portal_processing\n print titleBreak\n print \"Processing type: \\t\\t\\t\" + portal_processing\n print \"Portal URL: \\t\\t\\t\\t\" + portal.url\n print \"Signed in as: \\t\\t\\t\\t\" + portal.logged_in_user()['username'] + \" (Role: \" + portal.logged_in_user()['role'] + \")\"\n print \"Posting content for users: \\t\\t\" + str(users.keys())\n print \"Posting items shared with the following groups:\"\n print str(specified_groups)", "metadata": "root.print_script_header", "header": "['module', '___EOS___']", "index": 182 }, { "content": "def publish_portal(portaladdress,contentpath,adminuser,adminpassword, users, hostname_map, specified_groups, id_mapping_file):\n os.chdir(contentpath)\n \n portal_properties = json.load(open(\"portal_properties.json\"))\n portaladmin = Portal(portaladdress, adminuser, adminpassword)\n \n print_script_header(portaladmin, portal_processing, users, specified_groups)\n\n # Create Portal log folder for this portal\n portalLogPath = os.path.join(contentpath, portalLogFolder, get_servername_from_url(portaladmin.url))\n makeFolder(portalLogPath)\n \n # ------------------------------------------------------------------------\n # Get info about the groups on disk to filter items based on group membership\n # ------------------------------------------------------------------------\n # Get the groups on disk\n grps_on_disk = get_groups_on_disk(contentpath)\n \n # Validate that each specified group is valid\n if specified_groups:\n invalid_specified_groups = []\n for specified_group in specified_groups:\n found = False\n for grp in grps_on_disk.itervalues():\n if specified_group == grp:\n found = True\n if not found:\n invalid_specified_groups.append(specified_group)\n \n if len(invalid_specified_groups) > 0:\n print '\\n***ERROR: the following specified groups do not exist; NOTE: group owner and group title must match exactly including case:\\n'\n print invalid_specified_groups\n return\n \n # ------------------------------------------------------------------------\n # Create users\n # ------------------------------------------------------------------------\n print titleBreak\n print 'Create users...\\n'\n \n # Only create users if this is not an online organization\n if portaladmin.properties()['id'] == '0123456789ABCDEF': # All portals have this id.\n for username, userinfo in users.iteritems():\n create_user(portaladmin, contentpath, userinfo)\n else:\n print '\\tThis is an online organization. Users must already have been created.'\n\n # ------------------------------------------------------------------------\n # Create user folders\n # ------------------------------------------------------------------------\n print '\\n'+ titleBreak\n print 'Create user folders...\\n'\n \n for username, userinfo in users.iteritems():\n print '\\nUser: ' + userinfo['target_username']\n create_user_folders(portaladmin, contentpath, userinfo)\n\n # ------------------------------------------------------------------------\n # Create groups and add users to groups\n # ------------------------------------------------------------------------\n print \"\\n\" + titleBreak\n print \"Creating groups ...\\n\"\n \n oldGrpID_newGrpID = {}\n for username, userinfo in users.iteritems():\n newGroups = publish_user_groups(portaladmin, contentpath, userinfo, users)\n \n for key,val in newGroups.iteritems():\n oldGrpID_newGrpID[key] = {'id': val}\n \n # ------------------------------------------------------------------------\n # Publish Items and Update their sharing info\n # ------------------------------------------------------------------------\n print \"\\n\" + titleBreak\n print \"Publishing items and setting sharing ...\"\n print titleBreak\n \n for username, userinfo in users.iteritems():\n \n username = userinfo['target_username']\n password = userinfo['target_password']\n userfoldername = userinfo['username']\n \n # ---------------------------------------\n # Publish all the users' items\n # ---------------------------------------\n usercontentpath = os.path.join(contentpath, userfoldername)\n \n newItems, origItemSourceIDs = publish_user_items(portaladmin, username, usercontentpath, source_hostname,\n new_hostname, new_port, specified_groups, id_mapping_file, grps_on_disk)\n \n # Dump info about new items to JSON to use for resetting IDs of related items\n dump_newItem_info(newItems, origItemSourceIDs, os.path.join(portalLogPath, username))\n \n # ---------------------------------------\n # Share the users' items with the\n # appropriate groups\n # ---------------------------------------\n userItemsPath = os.path.join(contentpath, userfoldername, \"items\")\n share_items(portaladmin, userItemsPath, newItems, origItemSourceIDs, originGroupToDestGroups)\n \n \n # Dump info about all items (old, new ids) into json\n os.chdir(portalLogPath)\n json.dump(origIDToNewID, open('oldID_newID.json','w'))\n json.dump(oldGrpID_newGrpID, open('oldGrpID_newGrpID.json', 'w'))\n\n # ------------------------------------------------------------------------\n # Post publishing processing: Update URLs and item ids\n # ------------------------------------------------------------------------\n print \"\\n\" + titleBreak\n print \"Update URLs and Item IDs...\"\n print titleBreak + \"\\n\"\n \n # Add the group ids to the dictionary of old/new ids\n origIDToNewID.update(oldGrpID_newGrpID)\n \n update_post_publish(portaladmin, hostname_map, origIDToNewID)\n\n # Comment out: this functionality is now available out of the box\n # # ------------------------------------------------------------------------\n # # Share items in default web apps template and default gallery\n # # ------------------------------------------------------------------------ \n # # Share the items in the default web apps template and\n # # default gallery template built-in group with the\n # # 'OpsServer' user 'AFMI Web Application Templates' and\n # # 'AFMI Gallery Templates'\n # print \"\\n\" + sectionBreak\n # print \"Share the items in the default web apps and gallery template groups...\"\n # group_owner = 'OpsServer'\n # if users.get(group_owner):\n # share_templates(portaladdress, users[group_owner]['target_username'], users[group_owner]['target_password'])\n # else:\n # print \"-Skipping...user {} was not created. Can perform same operation through portal 'Edit Settings'.\".format(group_owner)\n\n print \"\\nDONE: Finished posting content to portal.\"", "metadata": "root.publish_portal", "header": "['module', '___EOS___']", "index": 195 }, { "content": "def get_groups_on_disk(contentpath):\n groups_on_disk_info = {}\n group_json_files = findFilePath(contentpath, 'group.json', returnFirst=False)\n for group_json_file in group_json_files:\n os.chdir(os.path.dirname(group_json_file))\n group_json = json.load(open('group.json'))\n groups_on_disk_info[group_json['id']] = '{}:{}'.format(group_json['owner'], group_json['title'])\n \n return groups_on_disk_info", "metadata": "root.get_groups_on_disk", "header": "['module', '___EOS___']", "index": 332 }, { "content": "def dump_newItem_info(newItems, origItemSourceIDs, userLogPath):\n # Used for resetting the various ids in 'related' items in target portal\n \n oldID_newItem_JsonFile = \"oldID_newItem.json\"\n oldID_newItem_JsonFilePath = os.path.join(userLogPath, oldID_newItem_JsonFile)\n \n oldID_newID_JsonFile = \"oldID_newID.json\"\n oldID_newID_JsonFilePath = os.path.join(userLogPath, oldID_newID_JsonFile)\n \n # Create user log folder\n makeFolder(userLogPath)\n os.chdir(userLogPath)\n \n # Create dictionary where key is old item id, value is dictionary containing info\n # about new item\n # {\"oldID\": {\"newID\": \"new id value\", \"type\": \"type value, \"owner\": \"owner value\"}}\n oldID_newItem = []\n oldID_newID = {}\n for x in range(0, len(origItemSourceIDs)):\n d = {}\n d_new_info = {}\n \n newID = newItems[x][\"id\"]\n oldID = origItemSourceIDs[x]\n itemType = newItems[x][\"type\"]\n itemOwner = newItems[x][\"owner\"]\n \n d[\"oldID\"] = oldID\n d[\"newItem\"] = newItems[x]\n \n oldID_newItem.append(d)\n \n d_new_info = {\"id\": newID, \"type\": itemType, \"owner\": itemOwner}\n oldID_newID[oldID] = dict(d_new_info)\n \n #Also add to module level dictionary\n origIDToNewID[oldID] = dict(d_new_info)\n \n # Dump info out to JSON files\n json.dump(oldID_newItem, open(oldID_newItem_JsonFile,'w'))\n json.dump(oldID_newID, open(oldID_newID_JsonFile,'w'))\n\n return oldID_newID_JsonFilePath, oldID_newItem_JsonFilePath", "metadata": "root.dump_newItem_info", "header": "['module', '___EOS___']", "index": 344 }, { "content": "def share_items(portal, userItemsPath, newItems, origItemSourceIDs, originGroupToDestGroups):\n #newItems - info on the items that were added to portal\n #origItemSourceIDs - the original source ids of the newItems, order of ids must match\n # order of newItems\n\n print \"Sharing items...\"\n \n for x in range(0, len(origItemSourceIDs)):\n newItem = newItems[x]\n newID = newItem[\"id\"]\n origID = origItemSourceIDs[x]\n\n itemIdfolder = os.path.join(userItemsPath,str(origID))\n \n if not os.path.exists(itemIdfolder):\n continue\n \n # Load sharing json file\n os.chdir(itemIdfolder)\n sharing = json.load(open('sharing.json'))\n \n new_group_ids = []\n new_group_names = []\n everyone = False\n org = False\n \n if sharing:\n #TODO: check if owner belongs to the groups being shared to??\n # swap stored group ids with portal group ids??\n old_group_ids = sharing['groups']\n for g in old_group_ids:\n if g in originGroupToDestGroups.keys():\n new_group_id = originGroupToDestGroups[g]\n new_group_ids.append(new_group_id)\n new_group_names = destGroupID_GroupName[new_group_id] #EL used for display\n \n if len(new_group_ids) == 0:\n new_group_ids = None\n \n print \"\\tSharing item \" + str(newItem.get(\"title\")) + \\\n \"[\" + str(newItem.get(\"type\")) + \"] with: \" + \\\n sharing['access'] + \", \" + str(new_group_names) + \"...\"\n \n if sharing['access'].lower() == \"public\":\n everyone = True\n org = True\n elif sharing['access'].lower() == \"org\":\n everyone = False\n org = True\n \n #TODO: should this function be located outside the if sharing statement...\n resp = portal.share_item(newID, new_group_ids, org, everyone)\n\n else:\n pass # nothing to share??\n del sharing", "metadata": "root.share_items", "header": "['module', '___EOS___']", "index": 388 }, { "content": "def has_user(portaladmin, username):\n ''' Determines if portal already has username '''\n exists = False\n portal_usernames = []\n portal_users = portaladmin.org_users()\n for portal_user in portal_users:\n portal_usernames.append(portal_user['username'])\n \n if username in portal_usernames:\n exists = True\n \n return exists", "metadata": "root.has_user", "header": "['module', '___EOS___']", "index": 445 }, { "content": "def create_user(portaladmin,contentpath,userinfo):\n \n username = userinfo['target_username']\n password = userinfo['target_password']\n userfoldername = userinfo['username']\n\n user_exists = has_user(portaladmin, username)\n \n if not user_exists:\n print ' - Creating user {}...'.format(username)\n # Get user properties from file\n userfolder = os.path.join(contentpath, userfoldername)\n os.chdir(userfolder)\n userproperties = json.load(open(\"userinfo.json\"))\n fullname = userproperties[\"fullName\"]\n role = userproperties[\"role\"]\n email = userproperties[\"email\"]\n \n # Check for null email\n if not email:\n email = username + '@no_email_in_user_profile.org'\n\n # Create user\n portaladmin.signup(username,password,fullname,email)\n \n # Modify user role\n portaladmin.update_user_role(username, role)\n else:\n print ' - User {} already exists.'.format(username)", "metadata": "root.create_user", "header": "['module', '___EOS___']", "index": 458 }, { "content": "def has_folder(portaladmin, username, foldername):\n ''' Determines if folder already exists '''\n exists = False\n portal_folders = []\n for portal_folder in portaladmin.folders(username):\n portal_folders.append(portal_folder['title'])\n \n if foldername in portal_folders:\n exists = True\n \n return exists", "metadata": "root.has_folder", "header": "['module', '___EOS___']", "index": 488 }, { "content": "def create_user_folders(portaladmin, contentpath, userinfo):\n ''' Create user folders '''\n \n if not os.path.exists(os.path.join(contentpath, userinfo['username'], 'folders.json')):\n print ' - No folders to create.'\n else:\n os.chdir(os.path.join(contentpath, userinfo['username']))\n folderinfo = json.load(open('folders.json'))\n for folder in folderinfo:\n foldername = folder[1]\n if not has_folder(portaladmin, userinfo['target_username'], foldername):\n print ' - Creating folder \"{}\"...'.format(foldername)\n portaladmin.create_folder(userinfo['target_username'], foldername)\n else:\n print ' - Folder \"{}\" already exists.'.format(foldername)", "metadata": "root.create_user_folders", "header": "['module', '___EOS___']", "index": 500 }, { "content": "def publish_user_items(portal, username, usercontentpath, old_hostname, new_hostname, new_port, specified_groups, id_mapping_file, grps_on_disk):\n ''' Publish all items for current user '''\n # Returns list of dictionaries of new items as well as a list of the\n # original item ids\n newitems, old_source_ids = [], []\n existing_portal_ids = []\n \n print \"\\n\" + sectionBreak\n print \"Publishing items for user '\" + username + \"'...\\n\"\n \n # Load 'id mapping' file if specified. Since this supports overwrite\n # capability, let's also create a list of all current item ids to verify that item\n # actually exists.\n id_mapping = None\n if id_mapping_file:\n filefolder = os.path.dirname(id_mapping_file)\n filename = os.path.basename(id_mapping_file)\n os.chdir(filefolder)\n id_mapping = json.load(open(filename))\n \n # Create list of existing portal items\n existing_portal_items = portal.search()\n for existing_portal_item in existing_portal_items:\n existing_portal_ids.append(existing_portal_item['id'])\n \n\n item_dirs = os.listdir(os.path.join(usercontentpath,\"items\"))\n \n n = 1\n for item_dir in item_dirs:\n overwrite_id = None\n do_load_item = False\n foldername = None\n \n print \"\\n\\tPublishing item {} ({}/{})...\".format(item_dir, n, len(item_dirs))\n \n if id_mapping:\n overwrite_id = id_mapping.get(item_dir)['id']\n if overwrite_id:\n print \"\\t -Item referenced in id mapping file. Checking if item exists in portal...\"\n if overwrite_id in existing_portal_ids:\n print \"\\t -Item exists in portal. Will update item.\"\n else:\n overwrite_id = None\n print \"*** WARNING: item referenced in id mapping file does NOT exist in portal. Will add new item instead of updating.\"\n \n \n # Determine if item should be loaded base on specified group parameters\n if not specified_groups:\n do_load_item = True\n else:\n os.chdir(os.path.join(usercontentpath,\"items\", item_dir))\n sharing_info = json.load(open('sharing.json'))\n item_groups = sharing_info.get('groups')\n for item_group in item_groups:\n grp_on_disk = grps_on_disk.get(item_group)\n if grp_on_disk:\n for specified_group in specified_groups:\n if specified_group == grp_on_disk:\n do_load_item = True\n\n if not do_load_item:\n print \"\\t -Skipping item. Item groups do not match user specified group criteria.\" \n \n \n # Add/Update item\n if do_load_item:\n \n try:\n item, old_source_id = load_item(portal, os.path.join(usercontentpath,\"items\", item_dir), overwrite_id)\n newitems.append(item)\n old_source_ids.append(old_source_id) \n \n # Reassign item to target owner and folder\n if os.path.exists(os.path.join(usercontentpath, \"folders.json\")):\n os.chdir(usercontentpath)\n foldersinfo = json.load(open('folders.json'))\n foldername = publish_get_folder_name_for_item(item, foldersinfo)\n \n portal.reassign_item(item['id'], username, foldername)\n \n except Exception as err:\n print 'ERROR: Exception on adding/updating item: {}'.format(item_dir)\n \n n = n + 1\n\n return newitems, old_source_ids", "metadata": "root.publish_user_items", "header": "['module', '___EOS___']", "index": 516 }, { "content": "def publish_user_groups(portal,contentpath, userinfo, users):\n \n username = userinfo['target_username']\n password = userinfo['target_password']\n userfoldername = userinfo['username']\n \n groupfolder = os.path.join(contentpath, userfoldername, 'groups')\n groupfolders = os.listdir(groupfolder)\n \n numTotalGroupFolders = len(groupfolders)\n if numTotalGroupFolders == 0:\n print \"\\nUser '{}' does not own any groups.\".format(username)\n else:\n print \"\\nCreating '{}' group(s) for user '{}'...\".format(str(numTotalGroupFolders), username)\n \n groupcount = 0\n groupsprocessed = 0\n groupsFailed = [\"None\"] #TODO: later we append to this list, but why do we initialize\n # list with one element with \"None\" string? Was this supposed to be\n # groupsFailed = []\n for folder in groupfolders:\n groupcount = groupcount + 1\n oldGroupID = folder #was groupID = folder\n groupidfolder = os.path.join(groupfolder, folder)\n os.chdir(groupidfolder)\n group = json.load(open(\"group.json\"))\n group_users = json.load(open(\"group_users.json\"))\n \n # Check if group to add already exists\n groupId = getGroupID(portal, username, str(group['title']))\n \n # Create group if it doesn't exist\n if not groupId:\n print \"... group '\" + str(group['title']) + \"'\"\n groupId = portal.create_group(group,group['thumbfile'])\n # Reassign group\n portal.reassign_group(groupId, username)\n else:\n print \"... group '\" + str(group['title']) + \"' already exists.\"\n \n destGroupID_GroupName[groupId] = str(group['title']) #Track new group id and group name for later use\n \n print \"...... adding users to group\"\n if groupId:\n originGroupToDestGroups[oldGroupID] = groupId\n groups = []\n groups.append(groupId)\n \n # Check if users are in the list we added to the portal\n users_to_invite = []\n portal_users = get_target_users(users)\n for u in map_group_users(group_users[\"users\"], users):\n u = str(u) #dict keys are unicode, make them ascii\n if u in portal_users:\n users_to_invite.append(u)\n \n if len(users_to_invite) != 0:\n print \"......... adding the following users: \" + str(users_to_invite)\n results = portal.add_group_users(users_to_invite, groups)\n else:\n print \"......... no users to add.\"\n groupsprocessed = groupsprocessed + 1\n else:\n groupsFailed.append(groupID) #TODO: we append to this list, but don't use it anywhere.\n os.chdir(groupfolder)\n \n return originGroupToDestGroups", "metadata": "root.publish_user_groups", "header": "['module', '___EOS___']", "index": 604 }, { "content": "def get_target_users(users):\n target_users = []\n for user, userinfo in users.iteritems():\n target_users.append(userinfo['target_username'])\n \n return target_users", "metadata": "root.get_target_users", "header": "['module', '___EOS___']", "index": 672 }, { "content": "def map_group_users(group_users, users):\n target_group_users = []\n for group_user in group_users:\n if group_user in users.keys():\n target_group_users.append(users[group_user]['target_username'])\n return target_group_users", "metadata": "root.map_group_users", "header": "['module', '___EOS___']", "index": 679 }, { "content": "def publish_portal_resources(portaladmin,portal_properties):\n #publish resources from disk\n portalID = portal_properties['id']\n resourcesJSON = json.load(open(os.path.join(contentpath,'resources.json')))\n resourcesList = resourcesJSON['resources']\n \n print \"Posting resources\"\n for rsc in resourcesList:\n key = rsc['key']\n if key != 'accountSettings':\n datafile = os.path.join(contentpath,key)\n resp = portaladmin.add_resource(portalID,key,datafile,None)", "metadata": "root.publish_portal_resources", "header": "['module', '___EOS___']", "index": 686 }, { "content": "def publish_portal_properties(portaladmin,portal_properties,oldHostname,newHostname):\n #update portal properties from old host to new\n \n portalID = portal_properties['id']\n resp = portaladmin.publish_portal_properties(portalID,portal_properties,oldHostname,newHostname)\n if resp['success'] == True:\n print \"Portal properties updated.\"\n else:\n print \"Error updating portal properties\"", "metadata": "root.publish_portal_properties", "header": "['module', '___EOS___']", "index": 699 }, { "content": "def get_servername_from_url(url):\n '''Get servername from url'''\n p = urlparse.urlparse(url)\n return p.hostname", "metadata": "root.get_servername_from_url", "header": "['module', '___EOS___']", "index": 709 }, { "content": "def publish_get_folder_name_for_item(item, folders):\n '''Return the folder name the specific item is in'''\n folderName = None\n \n ownerFolderID = item.get('ownerFolder') #Make sure to use .get, which will\n #return None if key does not exist.\n \n if ownerFolderID is not None and ownerFolderID <> 'null':\n # We now have the ID of the folder so examine the folder json\n # and determine the folder name for this folder ID\n \n # Example [[\"e1363455dd044ab384995218fe3386bb\", \"folder_1\", [{\"avgRating\": 0.0,...\n # element 0 is folderID, element 1 is folder name\n for folder in folders:\n folderID = folder[0]\n if folderID == ownerFolderID:\n folderName = folder[1]\n \n return folderName", "metadata": "root.publish_get_folder_name_for_item", "header": "['module', '___EOS___']", "index": 714 }, { "content": "def update_post_publish(portal, hostname_map, id_map):\n '''Replace server name and update item IDs referenced in items'''\n\n # Return all portal items\n items = portal.search()\n \n for item in items:\n \n print_item_info(item)\n \n # Replace host name/item ids in item json properties\n update_item_properties(portal, item, hostname_map, id_map)\n \n # Replace host name/item ids in item \"data\"\n update_item_data(portal, item, hostname_map, id_map)", "metadata": "root.update_post_publish", "header": "['module', '___EOS___']", "index": 734 }, { "content": "def update_item_properties(portal, item, hostname_map, id_map):\n '''Replace host name/item ids in item json properties'''\n \n jsonPropsToUpdate = ['description', 'snippet', 'accessInformation', 'licenseInfo', 'url']\n for jsonProp in jsonPropsToUpdate:\n is_updated = False\n propertyValue = item.get(jsonProp)\n if propertyValue:\n for host in hostname_map:\n search_str_list = [host, host.lower(), host.upper()]\n for search_str in search_str_list:\n if propertyValue.find(search_str) > -1:\n propertyValue = propertyValue.replace(search_str, hostname_map[host])\n is_updated = True\n \n for item_id in id_map:\n search_str_list = [item_id, item_id.lower(), item_id.upper()]\n for search_str in search_str_list:\n if propertyValue.find(search_str) > -1:\n propertyValue = propertyValue.replace(search_str, id_map[item_id][\"id\"])\n is_updated = True\n \n if is_updated:\n portal.update_item(item['id'], {jsonProp: propertyValue}) ", "metadata": "root.update_item_properties", "header": "['module', '___EOS___']", "index": 750 }, { "content": "def update_item_data(portal, item, hostname_map, id_map):\n '''Replace host name/item ids in item data'''\n\n if item['type'] in TEXT_BASED_ITEM_TYPES:\n \n try:\n itemdata = portal.item_data(item['id'])\n except Exception as err:\n print('ERROR: Exception: update_item_data function could not get item data for item: \"{}\"'.format(str(item.get('title'))))\n itemdata = None\n \n if itemdata:\n \n is_updated = False\n \n for host in hostname_map:\n search_str_list = [host, host.lower(), host.upper()]\n for search_str in search_str_list:\n if itemdata.find(search_str) > -1:\n itemdata = itemdata.replace(search_str, hostname_map[host])\n is_updated = True\n\n for item_id in id_map:\n search_str_list = [item_id, item_id.lower(), item_id.upper()]\n for search_str in search_str_list:\n if itemdata.find(search_str) > -1:\n itemdata = itemdata.replace(search_str, id_map[item_id][\"id\"])\n is_updated = True\n \n if is_updated:\n portal.update_item(item['id'], {'text': itemdata}) \n\n if item['type'] == 'CSV':\n update_csv_item(portal, item, hostname_map)", "metadata": "root.update_item_data", "header": "['module', '___EOS___']", "index": 775 }, { "content": "def update_csv_item(portal, item, hostname_map):\n ''' Update URLs in CSV item '''\n \n # Download file from portal\n filePath = portal.item_datad(item['id'])\n \n # Determine if file has the search string and perform replace\n is_updated = False\n for host in hostname_map:\n search_str_list = [host, host.lower(), host.upper()]\n for search_str in search_str_list:\n if findInFile(filePath, search_str):\n editFiles([filePath], search_str, hostname_map[host])\n is_updated = True\n \n # Upload the updated file back to the portal item\n if is_updated:\n portal.update_item(item['id'], None, filePath)\n \n # Delete the downloaded file\n if os.path.exists(filePath):\n os.remove(filePath)", "metadata": "root.update_csv_item", "header": "['module', '___EOS___']", "index": 810 }, { "content": "def print_item_info(item):\n itemID = item.get('id')\n itemTitle = item.get('title')\n itemOwner = item.get('owner')\n itemType = item.get('type')\n print \"\\tId: \" + str(itemID) + \"\\tTitle: '\" + str(itemTitle) + \"' (\" + str(itemType) + \"), Owner: '\" + str(itemOwner) + \"'\\n\"", "metadata": "root.print_item_info", "header": "['module', '___EOS___']", "index": 833 }, { "content": "def makeFolder(folderPath):\n '''Create folder'''\n if not os.path.exists(folderPath):\n os.makedirs(folderPath)", "metadata": "root.makeFolder", "header": "['module', '___EOS___']", "index": 840 }, { "content": "def val_arg_content_path(contentpath):\n '''Validate the content path script argument parameter'''\n is_valid = False\n if os.path.exists(contentpath):\n if os.path.isdir(contentpath):\n is_valid = True\n return is_valid", "metadata": "root.val_arg_content_path", "header": "['module', '___EOS___']", "index": 845 }, { "content": "def read_userfile(contentpath):\n # Create dictionary of users based on contents of userfile.txt file.\n # The \"userfile.txt\" file contains user name from source portal,\n # user name for target portal and the password for the target user name\n all_users = {}\n userfile = open(os.path.join(contentpath,'userfile.txt'),'r')\n lineOne = True\n for line in userfile:\n # Skip the header info line\n if lineOne:\n lineOne = False\n continue\n username,target_username,target_password = line.rstrip().split(',')\n \n all_users[username] = {'username': username,\n 'target_username': target_username,\n 'target_password': target_password}\n userfile.close()\n \n return all_users", "metadata": "root.read_userfile", "header": "['module', '___EOS___']", "index": 853 }, { "content": "def val_arg_users(specified_users, contentpath):\n values_to_use = {} # Contains users that that will be published\n exclude_users_list = [] # Contains users that should be excluded from publishing\n include_users_list = []\n \n if not specified_users:\n specified_users = \"\"\n else:\n specified_users = specified_users.strip()\n \n all_users = read_userfile(contentpath)\n \n # if there are no specified users then we should post content for\n # all users so return dictionary of all users\n if len(specified_users) == 0:\n return all_users\n \n elif specified_users == \"#\":\n return all_users\n \n elif specified_users.find(\"-\") == 0:\n values_to_use = all_users.copy()\n exclude_users = specified_users.replace(\"-\",\"\",1)\n exclude_users_list = [element.lower().strip() for element in exclude_users.split(\",\")]\n for exclude_user in exclude_users_list:\n for user in all_users:\n if exclude_user == user.lower():\n # Remove the user from the dictionary\n del values_to_use[user]\n return values_to_use \n \n else:\n # keep the users that were specified\n include_users_list = [element.lower().strip() for element in specified_users.split(\",\")]\n for include_user in include_users_list:\n for user in all_users:\n if include_user == user.lower():\n #add to dictionary\n values_to_use[user] = all_users[user] \n return values_to_use", "metadata": "root.val_arg_users", "header": "['module', '___EOS___']", "index": 874 }, { "content": "def share_templates(portaladdress, username, password):\n \n # Create portal connection\n portal = Portal(portaladdress, username, password)\n \n print '\\nShare web app templates with \"AFMI Web Application Templates\" group...'\n results = share_default_webapp_templates(portal, portal.logged_in_user()['username'], 'AFMI Web Application Templates')\n if results['success']:\n print '\\tDone.'\n else:\n print 'ERROR: {}'.format(results['message'])\n \n print '\\nShare web app templates with \"AFMI Gallery Templates\" group...'\n results = share_default_gallery_templates(portal, portal.logged_in_user()['username'], 'AFMI Gallery Templates')\n if results['success']:\n print '\\tDone.'\n else:\n print 'ERROR: {}'.format(results['message']) ", "metadata": "root.share_templates", "header": "['module', '___EOS___']", "index": 915 }, { "content": "def share_default_gallery_templates(portal, groupOwner, groupTitle):\n func_results = {'success': True}\n \n templateType = 'GALLERY'\n results = share_default_templates(portal, templateType, groupOwner, groupTitle)\n if not results['success']:\n func_results['success'] = results['success']\n func_results['message'] = results['message']\n \n return func_results", "metadata": "root.share_default_gallery_templates", "header": "['module', '___EOS___']", "index": 934 }, { "content": "def share_default_webapp_templates(portal, groupOwner, groupTitle):\n func_results = {'success': True}\n \n templateType = 'WEBAPPS'\n results = share_default_templates(portal, templateType, groupOwner, groupTitle)\n if not results['success']:\n func_results['success'] = results['success']\n func_results['message'] = results['message']\n \n return func_results", "metadata": "root.share_default_webapp_templates", "header": "['module', '___EOS___']", "index": 945 }, { "content": "def share_default_templates(portal, templateType, groupOwner, groupTitle):\n func_results = {'success': True}\n \n # Get a list of template ids for items shared with the \"default\" template group\n printStatement = '\\t-Retrieving list of items in default {} group...'\n \n if templateType == 'WEBAPPS':\n \n templateTypeStr = 'web app templates'\n print printStatement.format(templateTypeStr)\n templateIDs = unpack(portal.webmap_templates(['id']))\n \n elif templateType == 'GALLERY':\n \n templateTypeStr = 'gallery templates'\n print printStatement.format(templateTypeStr)\n templateIDs = unpack(portal.gallery_templates(['id']))\n \n else:\n # Template type value is invalid\n func_results['success'] = False\n func_results['message'] = 'Invalid templateType value \"{}\"; must be WEBAPPS or GALLERY.'.format(templateType)\n return func_results\n \n if not templateIDs:\n func_results['success'] = False\n func_results['message'] = '{} portal property not set to use \"Default\" group.'.format(templateTypeStr.capitalize())\n return func_results\n \n # Get the group id for the group to share the template items\n groupID = getGroupID(portal, groupOwner, groupTitle)\n \n if not groupID:\n func_results['success'] = False\n func_results['message'] = 'Could not find group where owner = \"{}\" and title = \"{}\"'.format(groupOwner, groupTitle)\n return func_results\n \n # Share templates with group\n print '\\t-Sharing web templates with group {} ({})...'.format(groupTitle, groupOwner)\n results = share_template_items(portal, templateIDs, [groupID])\n if not results['success']:\n func_results['success'] = False\n print results['message']\n \n return func_results", "metadata": "root.share_default_templates", "header": "['module', '___EOS___']", "index": 956 }, { "content": "def getGroupID(portal, owner, title):\n # Return id for group owned by 'owner' with title = specified title\n groupID = None\n groups = portal.user(owner)['groups']\n if groups:\n for group in groups:\n if group['title'] == title:\n groupID = group['id']\n \n return groupID", "metadata": "root.getGroupID", "header": "['module', '___EOS___']", "index": 1002 }, { "content": "def share_template_items(portal, item_ids, group_ids):\n func_results = {'success': True}\n errList = []\n for item_id in item_ids:\n results = portal.share_item(item_id, group_ids)\n if len(results['notSharedWith']) > 0:\n errList.append(results)\n \n if len(errList) > 0:\n func_results['success'] = False\n func_results['message'] = errList\n \n return func_results", "metadata": "root.share_template_items", "header": "['module', '___EOS___']", "index": 1013 }, { "content": "def tags_exist(find_tags, tags_to_search):\n '''Determines if specific \"OpsServer\" values exist in list of tags'''\n found = False\n \n DEBUG = False\n \n # Create list of possible \"OpsServer\" type tag prefixes; i.e. in case someone didn't\n # specify the correct prefix.\n ops_type_flags = [\"opsserver\", \"opsservers\", \"opserver\", \"opservers\", \"opssrver\", \"opssrvr\"]\n \n # Convert find_tags to lower case and remove and leading/trailing spaces\n find_tags_mod = [element.lower().strip().encode(\"ascii\") for element in list(find_tags)]\n \n # Convert tags_to_search to lower case and remove and leading/trailing spaces\n tags_to_search_mod = [element.lower().strip().encode(\"ascii\") for element in list(tags_to_search)]\n \n if DEBUG:\n print \"In tags_exist function: \"\n print \"\\tfind_tags_mod: \" + str(find_tags_mod)\n print \"\\ttags_to_search_mod: \" + str(tags_to_search_mod)\n print \"\\tops_type_flags: \" + str(ops_type_flags)\n \n # Loop through tags to search and look for the find tags\n for search in tags_to_search_mod:\n search = search.replace(\" \",\"\")\n \n if DEBUG:\n print \"\\tsearch: \" + search\n \n if search.find(\":\") > -1:\n \n if DEBUG:\n print \"\\tI'm in the find : if statement\"\n \n element1 = search.split(\":\")[0]\n element2 = search.split(\":\")[1]\n \n if DEBUG:\n print \"\\t\\telement1: \" + element1\n print \"\\t\\telement2: \" + element2\n \n if element1 in ops_type_flags:\n if element2 in find_tags_mod:\n found = True\n \n if DEBUG:\n print \"\\tfound: \" + str(found)\n \n return found", "metadata": "root.tags_exist", "header": "['module', '___EOS___']", "index": 1027 } ]

[ { "span": "import portalpy", "start_line": 29, "start_column": 0, "end_line": 29, "end_column": 15 }, { "span": "import types", "start_line": 32, "start_column": 0, "end_line": 32, "end_column": 12 }, { "span": "import shutil", "start_line": 33, "start_column": 0, "end_line": 33, "end_column": 13 }, { "span": "from portalpy import Portal, parse_hostname, portal_time, WebMap, normalize_url, unpack, TEXT_BASED_ITEM_TYPES", "start_line": 35, "start_column": 0, "end_line": 35, "end_column": 110 }, { "span": "from portalpy.provision import load_items, load_item", "start_line": 36, "start_column": 0, "end_line": 36, "end_column": 52 }, { "span": "import copy", "start_line": 39, "start_column": 0, "end_line": 39, "end_column": 11 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def compute(self):\n data = self.get_input(\"Data Array\")\n da_ar = data.get_array().squeeze()\n if da_ar.ndim != 2:\n raise ModuleError(\"Input Data Array must have dimension = 2\")\n\n aspect_ratio = self.force_get_input(\"Aspect Ratio\")\n colormap = self.force_get_input(\"Colormap\")\n colorbar = self.force_get_input(\"Colorbar\")\n extents = self.force_get_input(\"Extents\")\n\n # Quickly check the assigned colormap to make sure it's valid\n if colormap == None:\n colormap = \"jet\"\n if not hasattr(pylab, colormap):\n colormap = \"jet\"\n \n bg_color = self.force_get_input(\"Background\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n \n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n\n s = 'from pylab import *\\n' +\\\n 'from numpy import *\\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n s += 'imshow(da_ar, interpolation=\\'bicubic\\''\n if aspect_ratio != None:\n s += ', aspect=' + str(aspect_ratio)\n\n if extents != None:\n s += ', extent=['+str(extents[0])+','+str(extents[1])+','+str(extents[2])+','+str(extents[3])+']'\n s += ')\\n'\n\n s += colormap + '()\\n'\n\n if colorbar:\n s += 'colorbar()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data.get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + data.get_range_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n exec s\n self.set_output('source', s)", "metadata": "root.ArrayImage.compute", "header": "['class', 'ArrayImage', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 65 }, { "content": " def compute(self):\n data = self.get_input_list(\"Data Array\")\n self.label_dict = None\n self.color_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n bg_color = self.force_get_input(\"Background\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n nbins = self.force_get_input(\"Bins\")\n if nbins == None:\n nbins = 10\n normed = self.force_get_input(\"Normalize\")\n if normed == None:\n normed = False\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n\n s = 'from pylab import *\\n' +\\\n 'from numpy import *\\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n data_list = []\n for i in data:\n data_list.append(i.get_array().squeeze())\n\n da_ar = None\n try:\n da_ar = numpy.array(data_list)\n except:\n raise ModuleException(\"Not all Data Array inputs are the same size!\")\n\n for i in range(da_ar.shape[0]):\n lab = self.get_label(data[i], i)\n col = self.get_color(colors, i, randomcolors)\n\n s += 'hist(da_ar['+str(i)+',:], bins=' + str(nbins)\n \n if lab != None:\n s += ', label=\\'' + lab + '\\''\n if col != None:\n s += ', facecolor=' + str(col)\n\n s += ', normed='+str(normed)\n s += ')\\n'\n\n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data[0].get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'Histogram Value\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n exec s\n self.set_output(\"source\", s) ", "metadata": "root.Histogram.compute", "header": "['class', 'Histogram', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 162 }, { "content": " def compute(self):\n xdata = self.get_input_list(\"X Array\")\n ydata = self.get_input_list(\"Y Array\")\n self.label_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n self.color_dict = None\n bg_color = self.force_get_input(\"Background\")\n markers = self.force_get_input_list(\"Markers\")\n self.marker_dict = None\n ps = self.force_get_input(\"Point Size\")\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n\n p_title = self.force_get_input(\"Title\")\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n\n if len(xdata) != len(ydata):\n raise ModuleError(\"Cannot create scatter plot for different number of X and Y datasets.\")\n\n s = 'from pylab import *\\n' +\\\n 'from numpy import *\\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n\n xdata_ar = numpy.zeros((len(xdata), xdata[0].get_array().flatten().shape[0]))\n ydata_ar = numpy.zeros((len(xdata), xdata[0].get_array().flatten().shape[0]))\n\n for i in range(len(xdata)):\n xd = xdata[i]\n yd = ydata[i]\n xdata_ar[i,:] = xd.get_array().flatten()\n ydata_ar[i,:] = yd.get_array().flatten()\n \n for i in range(len(xdata)):\n xar = xdata[i]\n yar = ydata[i]\n\n lab = self.get_label(xar, i)\n col = self.get_color(colors, i, randomcolors)\n mar = self.get_marker(markers, i)\n\n s += 'scatter(xdata_ar[' + str(i) +',:], ydata_ar[' + str(i) + ',:]'\n \n if lab != None:\n s += ', label=\\'' + lab +'\\''\n if col != None:\n s += ', color=' + str(col)\n if mar != None:\n s += ', marker=\\'' + mar + '\\''\n if ps != None:\n s += ', size=' + str(ps)\n s += ')\\n'\n\n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + xar.get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + yar.get_domain_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n print s\n exec s\n self.set_output(\"source\", s)", "metadata": "root.ScatterPlot.compute", "header": "['class', 'ScatterPlot', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 404 }, { "content": " def compute(self):\n data = self.get_input(\"Input Array\")\n indexes = self.force_get_input(\"Indexes\")\n self.label_dict = None\n use_legend = self.force_get_input(\"Legend\")\n randomcolors = self.force_get_input(\"Random Colors\")\n colors = self.force_get_input_list(\"Colors\")\n self.color_dict = None\n markers = self.force_get_input_list(\"Markers\")\n self.marker_dict = None\n x_label = self.force_get_input(\"X Title\")\n y_label = self.force_get_input(\"Y Title\")\n p_title = self.force_get_input(\"Title\")\n bg_color = self.force_get_input(\"Background\")\n\n array_x_t = self.force_get_input(\"Use X Title\")\n array_y_t = self.force_get_input(\"Use Y Title\")\n\n s = urllib.unquote(str(self.force_get_input(\"source\", '')))\n self.source = ''\n da_ar = data.get_array()\n\n if da_ar.ndim > 2:\n raise ModuleError(\"Cannot plot data with dimensions > 2\")\n \n s = 'from pylab import *\\n' +\\\n 'from numpy import *\\n' +\\\n 'import numpy\\n'\n \n if bg_color == None:\n bg_color = 'w'\n\n if type(bg_color) == type(''):\n s += 'figure(facecolor=\\'' + bg_color + '\\')\\n'\n else:\n s += 'figure(facecolor=' + str(bg_color) + ')\\n'\n \n if da_ar.ndim == 1:\n da_ar.shape = (1, da_ar.shape[0])\n\n xar = self.force_get_input(\"X Values\")\n sf = self.force_get_input(\"Scaling Factor\")\n if sf == None:\n sf = 1.\n\n if xar == None:\n start_i = None\n end_i = None\n if indexes == None:\n start_i = 0\n end_i = da_ar.shape[1]\n else:\n start_i = indexes[0]\n end_i = indexes[1]\n\n xar = numpy.arange(start_i, end_i)\n xar = xar * sf\n else:\n xar = xar.get_array()\n \n print da_ar.shape\n print xar.shape\n for i in range(da_ar.shape[0]):\n lab = self.get_label(data, i)\n col = self.get_color(colors, i, randomcolors)\n mar = self.get_marker(markers, i)\n if indexes == None:\n s += 'plot(xar, da_ar[' + str(i) + ',:]'\n else:\n s += 'plot(xar, da_ar[' + str(i) + ',' + str(indexes[0]) + ':' + str(indexes[1]) + ']'\n \n if lab != None:\n s += ', label=\\'' + lab +'\\''\n if col != None:\n s += ', color=' + str(col)\n if mar != None:\n s += ', marker=\\'' + mar + '\\''\n s += ')\\n'\n\n if use_legend:\n s += 'legend()\\n'\n\n if array_x_t:\n s += 'xlabel(\\'' + data.get_domain_name() + '\\')\\n'\n elif x_label:\n s += 'xlabel(\\'' + x_label + '\\')\\n'\n\n if array_y_t:\n s += 'ylabel(\\'' + data.get_range_name() + '\\')\\n'\n elif y_label:\n s += 'ylabel(\\'' + y_label + '\\')\\n'\n\n if p_title:\n s += 'title(\\'' + p_title + '\\')\\n'\n\n exec s\n self.set_output(\"source\", s)", "metadata": "root.LinePlot.compute", "header": "['class', 'LinePlot', '(', 'ArrayPlot', ',', 'Module', ')', ':', '___EOS___']", "index": 518 } ]

[ { "span": "s ", "start_line": 90, "start_column": 8, "end_line": 90, "end_column": 9 }, { "span": "s ", "start_line": 181, "start_column": 8, "end_line": 181, "end_column": 9 }, { "span": "s ", "start_line": 423, "start_column": 8, "end_line": 423, "end_column": 9 }, { "span": "s ", "start_line": 536, "start_column": 8, "end_line": 536, "end_column": 9 } ]

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[ { "content": "from __future__ import (absolute_import, division, print_function,\n unicode_literals)\n\nfrom . import get_assert_same_ggplot, cleanup, assert_same_elements\nassert_same_ggplot = get_assert_same_ggplot(__file__)\n\n\nfrom nose.tools import (assert_true, assert_raises, assert_is,\n assert_is_not, assert_equal)\n\nfrom ggplot import *\n\nimport six\nimport pandas as pd\nfrom ggplot.components import assign_visual_mapping\nfrom ggplot.utils.exceptions import GgplotError\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def get_test_df():\n df = pd.DataFrame({\n 'xmin': [1, 3, 5],\n 'xmax': [2, 3.5, 7],\n 'ymin': [1, 4, 6],\n 'ymax': [5, 5, 9],\n 'fill': ['blue', 'red', 'green'],\n 'quality': ['good', 'bad', 'ugly'],\n 'alpha': [0.1, 0.5, 0.9],\n 'texture': ['hard', 'soft', 'medium']})\n return df", "metadata": "root.get_test_df", "header": "['module', '___EOS___']", "index": 17 }, { "content": "def test_legend_structure():\n df = get_test_df()\n\n gg = ggplot(df, aes(xmin='xmin', xmax='xmax', ymin='ymin', ymax='ymax',\n colour='quality', fill='fill', alpha='alpha',\n linetype='texture'))\n new_df, legend = assign_visual_mapping(df, gg.aesthetics, gg)\n\n # All mapped aesthetics must have an entry in the legend\n for aesthetic in ('color', 'fill', 'alpha', 'linetype'):\n assert(aesthetic in legend)\n\n # None of the unassigned aesthetic should have an entry in the legend\n assert('size' not in legend)\n assert('shape' not in legend)\n\n # legend entries should remember the column names\n # to which they were mapped\n assert(legend['fill']['column_name'] == 'fill')\n assert(legend['color']['column_name'] == 'quality')\n assert(legend['linetype']['column_name'] == 'texture')\n assert(legend['alpha']['column_name'] == 'alpha')\n\n # Discrete columns for non-numeric data\n assert(legend['fill']['scale_type'] == 'discrete')\n assert(legend['color']['scale_type'] == 'discrete')\n assert(legend['linetype']['scale_type'] == 'discrete')\n assert(legend['alpha']['scale_type'] == 'discrete')\n\n # Alternate\n df2 = pd.DataFrame.copy(df)\n df2['fill'] = [90, 3.2, 8.1]\n gg = ggplot(df2, aes(xmin='xmin', xmax='xmax', ymin='ymin', ymax='ymax',\n colour='quality', fill='fill', alpha='alpha',\n linetype='texture'))\n new_df, legend = assign_visual_mapping(df2, gg.aesthetics, gg)\n assert(legend['fill']['scale_type'] == 'discrete')\n\n # Test if legend switches to continuous for more than 8 numerical values\n df3 = pd.DataFrame({\n 'xmin': [1, 3, 5, 8, 2, 1, 4, 7, 9],\n 'xmax': [2, 3.5, 7, 12, 3, 2, 6, 8, 10],\n 'ymin': [1, 4, 6, 0, 0, 0, 0, 0, 0],\n 'ymax': [5, 5, 9, 1, 1, 1, 1, 1, 1],\n 'fill': ['blue', 'red', 'green', 'green', 'green',\n 'green', 'green', 'green', 'brown'],\n 'quality': ['good', 'bad', 'ugly', 'horrible', 'quite awful',\n 'impertinent', 'jolly', 'hazardous', 'ok'],\n 'alpha': [0.1, 0.2, 0.4, 0.5, 0.6, 0.65, 0.8, 0.82, 0.83],\n 'texture': ['hard', 'soft', 'medium', 'fluffy', 'slimy', 'rough',\n 'edgy', 'corny', 'slanted']\n })\n gg = ggplot(df2, aes(xmin='xmin', xmax='xmax', ymin='ymin', ymax='ymax',\n colour='quality', fill='fill', alpha='alpha',\n linetype='texture'))\n new_df, legend = assign_visual_mapping(df3, gg.aesthetics, gg)\n assert(legend['alpha']['scale_type'] == 'continuous')\n\n # Test if legend raises GgplotError when size and alpha is fed non numeric data\n gg = ggplot(df3, aes(size=\"fill\"))\n assert_raises(GgplotError, assign_visual_mapping, df3, gg.aesthetics, gg)\n gg = ggplot(df3, aes(alpha=\"fill\"))\n assert_raises(GgplotError, assign_visual_mapping, df3, gg.aesthetics, gg)", "metadata": "root.test_legend_structure", "header": "['module', '___EOS___']", "index": 29 }, { "content": "@cleanup\ndef test_alpha_rect():\n df = get_test_df()\n p = ggplot(df, aes(xmin='xmin', xmax='xmax', ymin='ymin', ymax='ymax',\n colour='quality', fill='fill', alpha='alpha',\n linetype='texture'))\n p += geom_rect(size=5)\n assert_same_ggplot(p, \"legend_alpha_rect\")", "metadata": "root.test_alpha_rect", "header": "['module', '___EOS___']", "index": 93 }, { "content": "@cleanup\ndef test_alpha():\n diamonds[\"test\"] = diamonds[\"clarity\"].map(len)\n p = ggplot(diamonds[::50], aes(x='carat', y='price', colour='test',\n size='test', alpha='test'))\n #p = ggplot(diamonds[1:60000:50], aes(x='carat', y='price', shape='clarity'))\n p = p + geom_point() + ggtitle(\"Diamonds: A Plot\")\n p = p + xlab(\"Carat\") + ylab(\"Price\")\n assert_same_ggplot(p, \"legend_alpha\")", "metadata": "root.test_alpha", "header": "['module', '___EOS___']", "index": 102 }, { "content": "@cleanup\ndef test_linetype():\n meat_lng = pd.melt(meat[['date', 'beef', 'pork', 'broilers']], id_vars='date')\n p = ggplot(aes(x='date', y='value', colour='variable',\n linetype='variable', shape='variable'), data=meat_lng) + \\\n geom_line() + geom_point() +\\\n ylim(0, 3000)\n assert_same_ggplot(p, \"legend_linetype\")", "metadata": "root.test_linetype", "header": "['module', '___EOS___']", "index": 112 }, { "content": "@cleanup\ndef test_shape_alpha():\n diamonds[\"test\"] = diamonds[\"clarity\"].map(len)\n df = diamonds[::50]\n p = ggplot(df, aes(x='carat', y='price', colour='test', size='test',\n alpha='test', shape='clarity')) + geom_point()\n assert_same_ggplot(p, \"legend_shape_alpha\")", "metadata": "root.test_shape_alpha", "header": "['module', '___EOS___']", "index": 121 } ]

[ { "span": "from nose.tools import (assert_true, assert_raises, assert_is,\n assert_is_not, assert_equal)", "start_line": 7, "start_column": 0, "end_line": 8, "end_column": 52 }, { "span": "import six", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 10 } ]

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[ { "content": "import unittest\n\nfrom rx.observable import Observable\nfrom rx.testing import TestScheduler, ReactiveTest\nfrom rx.disposables import Disposable, SerialDisposable\n\non_next = ReactiveTest.on_next\non_completed = ReactiveTest.on_completed\non_error = ReactiveTest.on_error\nsubscribe = ReactiveTest.subscribe\nsubscribed = ReactiveTest.subscribed\ndisposed = ReactiveTest.disposed\ncreated = ReactiveTest.created\n\n\n# Helper function for raising exceptions within lambdas\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class RxException(Exception):\n pass", "metadata": "root.RxException", "header": "['module', '___EOS___']", "index": 14 }, { "content": "def _raise(ex):\n raise RxException(ex)", "metadata": "root._raise", "header": "['module', '___EOS___']", "index": 18 }, { "content": "class TestSingleOrDefault(unittest.TestCase):\n\n\n\n\n\n\n\n\n\n ", "metadata": "root.TestSingleOrDefault", "header": "['module', '___EOS___']", "index": 21 }, { "content": " def test_single_or_default_async_empty(self):\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_completed(250))\n\n def create():\n return xs.single_or_default(None, 0)\n\n res = scheduler.start(create=create)\n\n res.messages.assert_equal(on_next(250, 0), on_completed(250))\n xs.subscriptions.assert_equal(subscribe(200, 250))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_empty", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 22 }, { "content": " def test_single_or_default_async_one(self):\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_next(210, 2), on_completed(250))\n\n def create():\n return xs.single_or_default(None, 0)\n\n res = scheduler.start(create=create)\n\n res.messages.assert_equal(on_next(250, 2), on_completed(250))\n xs.subscriptions.assert_equal(subscribe(200, 250))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_one", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 34 }, { "content": " def test_single_or_default_async_many(self):\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_next(210, 2), on_next(220, 3), on_completed(250))\n\n def create():\n return xs.single_or_default(None, 0)\n\n res = scheduler.start(create=create)\n\n def predicate(e):\n return not e is None\n\n res.messages.assert_equal(on_error(220, predicate))\n xs.subscriptions.assert_equal(subscribe(200, 220))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_many", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 47 }, { "content": " def test_single_or_default_async_error(self):\n ex = 'ex'\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_error(210, ex))\n\n def create():\n return xs.single_or_default(None, 0)\n\n res = scheduler.start(create=create)\n\n res.messages.assert_equal(on_error(210, ex))\n xs.subscriptions.assert_equal(subscribe(200, 210))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_error", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 62 }, { "content": " def test_single_or_default_async_predicate(self):\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_next(210, 2), on_next(220, 3), on_next(230, 4), on_next(240, 5), on_completed(250))\n\n def create():\n def predicate(x):\n return x % 2 == 1\n\n return xs.single_or_default(predicate, 0)\n\n res = scheduler.start(create=create)\n\n def predicate(e):\n return not e is None\n\n res.messages.assert_equal(on_error(240, predicate))\n xs.subscriptions.assert_equal(subscribe(200, 240))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_predicate", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 75 }, { "content": " def test_single_or_default_async_predicate_empty(self):\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_completed(250))\n\n def create():\n def predicate(x):\n return x % 2 == 1\n return xs.single_or_default(predicate, 0)\n\n res = scheduler.start(create=create)\n\n res.messages.assert_equal(on_next(250, 0), on_completed(250))\n xs.subscriptions.assert_equal(subscribe(200, 250))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_predicate_empty", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 93 }, { "content": " def test_single_or_default_async_predicate_one(self):\n ex = 'ex'\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_next(210, 2), on_next(220, 3), on_next(230, 4), on_next(240, 5), on_completed(250))\n\n def create():\n def predicate(x):\n return x == 4\n\n return xs.single_or_default(predicate, 0)\n\n res = scheduler.start(create=create)\n\n res.messages.assert_equal(on_next(250, 4), on_completed(250))\n xs.subscriptions.assert_equal(subscribe(200, 250))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_predicate_one", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 107 }, { "content": " def test_single_or_default_async_predicate_none(self):\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_next(210, 2), on_next(220, 3), on_next(230, 4), on_next(240, 5), on_completed(250))\n\n def create():\n def predicate(x):\n return x > 10\n\n return xs.single_or_default(predicate, 0)\n\n res = scheduler.start(create=create)\n\n res.messages.assert_equal(on_next(250, 0), on_completed(250))\n xs.subscriptions.assert_equal(subscribe(200, 250))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_predicate_none", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 123 }, { "content": " def test_single_or_default_async_predicate_throw(self):\n ex = 'ex'\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_error(210, ex))\n \n def create():\n def predicate(x):\n return x > 10\n return xs.single_or_default(predicate, 0)\n \n res = scheduler.start(create=create)\n \n res.messages.assert_equal(on_error(210, ex))\n xs.subscriptions.assert_equal(subscribe(200, 210))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_predicate_throw", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 138 }, { "content": " def test_single_or_default_async_predicate_throws(self):\n ex = 'ex'\n scheduler = TestScheduler()\n xs = scheduler.create_hot_observable(on_next(150, 1), on_next(210, 2), on_next(220, 3), on_next(230, 4), on_next(240, 5), on_completed(250))\n \n def create():\n def predicate(x):\n if x < 4:\n return False\n else:\n raise Exception(ex)\n \n return xs.single_or_default(predicate, 0)\n res = scheduler.start(create=create)\n \n res.messages.assert_equal(on_error(230, ex))\n xs.subscriptions.assert_equal(subscribe(200, 230))", "metadata": "root.TestSingleOrDefault.test_single_or_default_async_predicate_throws", "header": "['class', 'TestSingleOrDefault', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 153 } ]

[ { "span": "from rx.observable import Observable", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 36 }, { "span": "from rx.disposables import Disposable, SerialDisposable", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 55 } ]

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[ { "content": "class CommentStripper:\n \"\"\"Iterator for stripping comments from file.\n\n This iterator will skip any lines beginning with ``#``\n or any empty lines at the beginning of the output.\n \"\"\"\n\n\n", "metadata": "root.CommentStripper", "header": "['module', '___EOS___']", "index": 68 }, { "content": " def __iter__(self):\n return self", "metadata": "root.CommentStripper.__iter__", "header": "['class', 'CommentStripper', ':', '___EOS___']", "index": 78 }, { "content": "class UnicodeCsvReader(object):\n\n\n\n", "metadata": "root.UnicodeCsvReader", "header": "['module', '___EOS___']", "index": 104 }, { "content": " def __iter__(self):\n return self", "metadata": "root.UnicodeCsvReader.__iter__", "header": "['class', 'UnicodeCsvReader', '(', 'object', ')', ':', '___EOS___']", "index": 110 }, { "content": "class DictReaderLarge:\n \"\"\"Substitute for :py:class:`csv.DictReader` that handles very large\n fields.\n\n :py:mod:`csv` is implemented in C and limits the number of columns\n per table. This class has no such limit, but will not be as fast.\n\n This class is only a minimal implementation. For example, it does\n not handle dialects.\n \"\"\"\n\n\n", "metadata": "root.DictReaderLarge", "header": "['module', '___EOS___']", "index": 131 }, { "content": " def __iter__(self):\n return self", "metadata": "root.DictReaderLarge.__iter__", "header": "['class', 'DictReaderLarge', ':', '___EOS___']", "index": 147 } ]

[ { "span": "class CommentStripper:", "start_line": 68, "start_column": 0, "end_line": 68, "end_column": 22 }, { "span": "class UnicodeCsvReader(object):", "start_line": 104, "start_column": 0, "end_line": 104, "end_column": 31 }, { "span": "class DictReaderLarge:", "start_line": 131, "start_column": 0, "end_line": 131, "end_column": 22 } ]

[ { "span": "def __iter__(self):", "start_line": 78, "start_column": 4, "end_line": 78, "end_column": 23 }, { "span": "def __iter__(self):", "start_line": 110, "start_column": 4, "end_line": 110, "end_column": 23 }, { "span": "def __iter__(self):", "start_line": 147, "start_column": 4, "end_line": 147, "end_column": 23 } ]

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[ { "content": "def agi_code_check(code, response, line):\n \"\"\"\n Check the AGI code and return a dict to help on error handling.\n \"\"\"\n result = {'status_code': code, 'result': ('', ''), 'msg': ''}\n if code == 200:\n for key, value, data in re_kv.findall(response):\n result[key] = (value, data)\n # If user hangs up... we get 'hangup' in the data\n if data == 'hangup':\n return {'error': 'AGIResultHangup', 'msg': 'User hungup during execution'}\n if key == 'result' and value == '-1':\n return {'error': 'AGIAppError', 'msg': 'Error executing application, or hangup'}\n return result\n elif code == 510:\n result['error'] = 'AGIInvalidCommand'\n return result\n elif code == 520:\n usage = [line]\n usage = '%s\\n' % '\\n'.join(usage)\n # AGI Usage error\n result['error'] = 'AGIUsageError'\n result['msg'] = 'usage'\n return result\n else:\n # Unhandled code or undefined response\n result['error'] = 'AGIUnknownError'\n return result", "metadata": "root.agi_code_check", "header": "['module', '___EOS___']", "index": 65 } ]

[ { "span": "usage ", "start_line": 84, "start_column": 8, "end_line": 84, "end_column": 13 } ]

[]

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[ { "content": "import unittest\n\nfrom django.db import connection\nfrom django.contrib.gis.tests.utils import mysql, no_mysql, oracle, postgis, spatialite\n\ntest_srs = ({'srid' : 4326,\n 'auth_name' : ('EPSG', True),\n 'auth_srid' : 4326,\n 'srtext' : 'GEOGCS[\"WGS 84\",DATUM[\"WGS_1984\",SPHEROID[\"WGS 84\",6378137,298.257223563,AUTHORITY[\"EPSG\",\"7030\"]],TOWGS84[0,0,0,0,0,0,0],AUTHORITY[\"EPSG\",\"6326\"]],PRIMEM[\"Greenwich\",0,AUTHORITY[\"EPSG\",\"8901\"]],UNIT[\"degree\",0.01745329251994328,AUTHORITY[\"EPSG\",\"9122\"]],AUTHORITY[\"EPSG\",\"4326\"]]',\n 'srtext14' : 'GEOGCS[\"WGS 84\",DATUM[\"WGS_1984\",SPHEROID[\"WGS 84\",6378137,298.257223563,AUTHORITY[\"EPSG\",\"7030\"]],AUTHORITY[\"EPSG\",\"6326\"]],PRIMEM[\"Greenwich\",0,AUTHORITY[\"EPSG\",\"8901\"]],UNIT[\"degree\",0.01745329251994328,AUTHORITY[\"EPSG\",\"9122\"]],AUTHORITY[\"EPSG\",\"4326\"]]',\n 'proj4' : '+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs ',\n 'spheroid' : 'WGS 84', 'name' : 'WGS 84', \n 'geographic' : True, 'projected' : False, 'spatialite' : True,\n 'ellipsoid' : (6378137.0, 6356752.3, 298.257223563), # From proj's \"cs2cs -le\" and Wikipedia (semi-minor only)\n 'eprec' : (1, 1, 9),\n },\n {'srid' : 32140,\n 'auth_name' : ('EPSG', False),\n 'auth_srid' : 32140,\n 'srtext' : 'PROJCS[\"NAD83 / Texas South Central\",GEOGCS[\"NAD83\",DATUM[\"North_American_Datum_1983\",SPHEROID[\"GRS 1980\",6378137,298.257222101,AUTHORITY[\"EPSG\",\"7019\"]],AUTHORITY[\"EPSG\",\"6269\"]],PRIMEM[\"Greenwich\",0,AUTHORITY[\"EPSG\",\"8901\"]],UNIT[\"degree\",0.01745329251994328,AUTHORITY[\"EPSG\",\"9122\"]],AUTHORITY[\"EPSG\",\"4269\"]],PROJECTION[\"Lambert_Conformal_Conic_2SP\"],PARAMETER[\"standard_parallel_1\",30.28333333333333],PARAMETER[\"standard_parallel_2\",28.38333333333333],PARAMETER[\"latitude_of_origin\",27.83333333333333],PARAMETER[\"central_meridian\",-99],PARAMETER[\"false_easting\",600000],PARAMETER[\"false_northing\",4000000],UNIT[\"metre\",1,AUTHORITY[\"EPSG\",\"9001\"]],AUTHORITY[\"EPSG\",\"32140\"]]',\n 'srtext14': 'PROJCS[\"NAD83 / Texas South Central\",GEOGCS[\"NAD83\",DATUM[\"North_American_Datum_1983\",SPHEROID[\"GRS 1980\",6378137,298.257222101,AUTHORITY[\"EPSG\",\"7019\"]],AUTHORITY[\"EPSG\",\"6269\"]],PRIMEM[\"Greenwich\",0,AUTHORITY[\"EPSG\",\"8901\"]],UNIT[\"degree\",0.01745329251994328,AUTHORITY[\"EPSG\",\"9122\"]],AUTHORITY[\"EPSG\",\"4269\"]],UNIT[\"metre\",1,AUTHORITY[\"EPSG\",\"9001\"]],PROJECTION[\"Lambert_Conformal_Conic_2SP\"],PARAMETER[\"standard_parallel_1\",30.28333333333333],PARAMETER[\"standard_parallel_2\",28.38333333333333],PARAMETER[\"latitude_of_origin\",27.83333333333333],PARAMETER[\"central_meridian\",-99],PARAMETER[\"false_easting\",600000],PARAMETER[\"false_northing\",4000000],AUTHORITY[\"EPSG\",\"32140\"],AXIS[\"X\",EAST],AXIS[\"Y\",NORTH]]',\n 'proj4' : '+proj=lcc +lat_1=30.28333333333333 +lat_2=28.38333333333333 +lat_0=27.83333333333333 +lon_0=-99 +x_0=600000 +y_0=4000000 +ellps=GRS80 +datum=NAD83 +units=m +no_defs ',\n 'spheroid' : 'GRS 1980', 'name' : 'NAD83 / Texas South Central',\n 'geographic' : False, 'projected' : True, 'spatialite' : False,\n 'ellipsoid' : (6378137.0, 6356752.31414, 298.257222101), # From proj's \"cs2cs -le\" and Wikipedia (semi-minor only)\n 'eprec' : (1, 5, 10),\n },\n )\n\nif oracle:\n from django.contrib.gis.db.backends.oracle.models import SpatialRefSys\nelif postgis:\n from django.contrib.gis.db.backends.postgis.models import SpatialRefSys\nelif spatialite:\n from django.contrib.gis.db.backends.spatialite.models import SpatialRefSys\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class SpatialRefSysTest(unittest.TestCase):\n\n\n", "metadata": "root.SpatialRefSysTest", "header": "['module', '___EOS___']", "index": 36 }, { "content": " @no_mysql\n def test01_retrieve(self):\n \"Testing retrieval of SpatialRefSys model objects.\"\n for sd in test_srs:\n srs = SpatialRefSys.objects.get(srid=sd['srid'])\n self.assertEqual(sd['srid'], srs.srid)\n\n # Some of the authority names are borked on Oracle, e.g., SRID=32140.\n # also, Oracle Spatial seems to add extraneous info to fields, hence the\n # the testing with the 'startswith' flag.\n auth_name, oracle_flag = sd['auth_name']\n if postgis or (oracle and oracle_flag):\n self.assertEqual(True, srs.auth_name.startswith(auth_name))\n \n self.assertEqual(sd['auth_srid'], srs.auth_srid)\n\n # No proj.4 and different srtext on oracle backends :(\n if postgis:\n if connection.ops.spatial_version >= (1, 4, 0):\n srtext = sd['srtext14']\n else:\n srtext = sd['srtext']\n self.assertEqual(srtext, srs.wkt)\n self.assertEqual(sd['proj4'], srs.proj4text)", "metadata": "root.SpatialRefSysTest.test01_retrieve", "header": "['class', 'SpatialRefSysTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 38 }, { "content": " @no_mysql\n def test02_osr(self):\n \"Testing getting OSR objects from SpatialRefSys model objects.\"\n for sd in test_srs:\n sr = SpatialRefSys.objects.get(srid=sd['srid'])\n self.assertEqual(True, sr.spheroid.startswith(sd['spheroid']))\n self.assertEqual(sd['geographic'], sr.geographic)\n self.assertEqual(sd['projected'], sr.projected)\n\n if not (spatialite and not sd['spatialite']):\n # Can't get 'NAD83 / Texas South Central' from PROJ.4 string\n # on SpatiaLite\n self.assertEqual(True, sr.name.startswith(sd['name']))\n\n # Testing the SpatialReference object directly.\n if postgis or spatialite:\n srs = sr.srs\n self.assertEqual(sd['proj4'], srs.proj4)\n # No `srtext` field in the `spatial_ref_sys` table in SpatiaLite\n if not spatialite:\n if connection.ops.spatial_version >= (1, 4, 0):\n srtext = sd['srtext14']\n else:\n srtext = sd['srtext']\n self.assertEqual(srtext, srs.wkt)", "metadata": "root.SpatialRefSysTest.test02_osr", "header": "['class', 'SpatialRefSysTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 63 }, { "content": " @no_mysql\n def test03_ellipsoid(self):\n \"Testing the ellipsoid property.\"\n for sd in test_srs:\n # Getting the ellipsoid and precision parameters.\n ellps1 = sd['ellipsoid']\n prec = sd['eprec']\n\n # Getting our spatial reference and its ellipsoid\n srs = SpatialRefSys.objects.get(srid=sd['srid'])\n ellps2 = srs.ellipsoid\n\n for i in range(3):\n param1 = ellps1[i]\n param2 = ellps2[i]\n self.assertAlmostEqual(ellps1[i], ellps2[i], prec[i])", "metadata": "root.SpatialRefSysTest.test03_ellipsoid", "header": "['class', 'SpatialRefSysTest', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 89 }, { "content": "def suite():\n s = unittest.TestSuite()\n s.addTest(unittest.makeSuite(SpatialRefSysTest))\n return s", "metadata": "root.suite", "header": "['module', '___EOS___']", "index": 106 }, { "content": "def run(verbosity=2):\n unittest.TextTestRunner(verbosity=verbosity).run(suite())", "metadata": "root.run", "header": "['module', '___EOS___']", "index": 111 } ]

[ { "span": "from django.contrib.gis.tests.utils import mysql, no_mysql, oracle, postgis, spatialite", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 87 } ]

[]

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[ { "content": " def test_cse_kms(self):\n emrfs_option_value = 'Encryption=ClientSide,ProviderType=KMS,' \\\n 'KMSKeyId=my_key'\n expected_emrfs_ba_key_values = [\n 'fs.s3.cse.enabled=true', 'fs.s3.cse.encryptionMaterialsProvider='\n 'com.amazon.ws.emr.hadoop.fs.cse.KMSEncryptionMaterialsProvider',\n 'fs.s3.cse.kms.keyId=my_key'\n ]\n expected_emrfs_properties = {\n 'fs.s3.cse.enabled': 'true',\n 'fs.s3.cse.encryptionMaterialsProvider':\n 'com.amazon.ws.emr.hadoop.fs.cse.'\n 'KMSEncryptionMaterialsProvider',\n 'fs.s3.cse.kms.keyId': 'my_key'}\n self._assert_bootstrap_actions(\n emrfs_option_value, expected_emrfs_ba_key_values,\n expected_emrfs_properties)", "metadata": "root.TestEmrfsUtils.test_cse_kms", "header": "['class', 'TestEmrfsUtils', '(', 'BaseAWSCommandParamsTest', ')', ':', '___EOS___']", "index": 130 }, { "content": " def test_cse_custom(self):\n emrfs_option_value = 'Encryption=ClientSide,ProviderType=Custom,' \\\n 'CustomProviderLocation=my_location,CustomProviderClass=my_class'\n expected_emrfs_ba_key_values = [\n 'fs.s3.cse.enabled=true', 'fs.s3.cse.encryptionMaterialsProvider='\n 'my_class'\n ]\n expected_emrfs_properties = {\n 'fs.s3.cse.enabled': 'true',\n 'fs.s3.cse.encryptionMaterialsProvider': 'my_class',\n 'fs.s3.cse.encryptionMaterialsProvider.uri': 'my_location'}\n\n self._assert_bootstrap_actions(\n emrfs_option_value, expected_emrfs_ba_key_values,\n expected_emrfs_properties, 'my_location')", "metadata": "root.TestEmrfsUtils.test_cse_custom", "header": "['class', 'TestEmrfsUtils', '(', 'BaseAWSCommandParamsTest', ')', ':', '___EOS___']", "index": 148 }, { "content": " def test_cse_and_consistent(self):\n emrfs_option_value = ('Encryption=ClientSide,ProviderType=KMS,'\n 'KMSKeyId=my_key,Consistent=true')\n expected_emrfs_ba_key_values = [\n 'fs.s3.consistent=true', 'fs.s3.cse.enabled=true',\n 'fs.s3.cse.encryptionMaterialsProvider=com.amazon.ws.emr.'\n 'hadoop.fs.cse.KMSEncryptionMaterialsProvider',\n 'fs.s3.cse.kms.keyId=my_key']\n expected_emrfs_properties = {\n 'fs.s3.consistent': 'true',\n 'fs.s3.cse.enabled': 'true',\n 'fs.s3.cse.encryptionMaterialsProvider': 'com.amazon.ws.emr.'\n 'hadoop.fs.cse.KMSEncryptionMaterialsProvider',\n 'fs.s3.cse.kms.keyId': 'my_key'}\n\n self._assert_bootstrap_actions(\n emrfs_option_value, expected_emrfs_ba_key_values,\n expected_emrfs_properties)", "metadata": "root.TestEmrfsUtils.test_cse_and_consistent", "header": "['class', 'TestEmrfsUtils', '(', 'BaseAWSCommandParamsTest', ')', ':', '___EOS___']", "index": 188 }, { "content": " def test_args_and_cse(self):\n emrfs_option_value = ('Encryption=ClientSide,ProviderType=KMS,'\n 'KMSKeyId=my_key,Args=[k1=v1]')\n expected_emrfs_ba_key_values = [\n 'fs.s3.cse.enabled=true',\n 'fs.s3.cse.encryptionMaterialsProvider=com.amazon.ws.emr.'\n 'hadoop.fs.cse.KMSEncryptionMaterialsProvider',\n 'fs.s3.cse.kms.keyId=my_key', 'k1=v1']\n expected_emrfs_properties = {\n 'fs.s3.cse.enabled': 'true',\n 'fs.s3.cse.encryptionMaterialsProvider': 'com.amazon.ws.emr.'\n 'hadoop.fs.cse.KMSEncryptionMaterialsProvider',\n 'fs.s3.cse.kms.keyId': 'my_key',\n 'k1': 'v1'}\n\n self._assert_bootstrap_actions(\n emrfs_option_value, expected_emrfs_ba_key_values,\n expected_emrfs_properties)", "metadata": "root.TestEmrfsUtils.test_args_and_cse", "header": "['class', 'TestEmrfsUtils', '(', 'BaseAWSCommandParamsTest', ')', ':', '___EOS___']", "index": 221 } ]

[ { "span": "'fs.s3.cse.encryptionMaterialsProvider='\n 'com.amazon.ws.emr.hadoop.fs.cse.KMSEncryptionMaterialsProvider',", "start_line": 134, "start_column": 38, "end_line": 135, "end_column": 76 }, { "span": "'fs.s3.cse.encryptionMaterialsProvider='\n 'my_class'", "start_line": 152, "start_column": 38, "end_line": 153, "end_column": 22 }, { "span": "'fs.s3.cse.encryptionMaterialsProvider=com.amazon.ws.emr.'\n 'hadoop.fs.cse.KMSEncryptionMaterialsProvider',", "start_line": 193, "start_column": 12, "end_line": 194, "end_column": 58 }, { "span": "'fs.s3.cse.encryptionMaterialsProvider=com.amazon.ws.emr.'\n 'hadoop.fs.cse.KMSEncryptionMaterialsProvider',", "start_line": 226, "start_column": 12, "end_line": 227, "end_column": 58 } ]

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[ { "content": "class MockAnything:\n \"\"\"A mock that can be used to mock anything.\n\n This is helpful for mocking classes that do not provide a public interface.\n \"\"\"\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.MockAnything", "header": "['module', '___EOS___']", "index": 409 }, { "content": " def __init__(self, description=None):\n \"\"\"Initialize a new MockAnything.\n\n Args:\n description: str. Optionally, a descriptive name for the mock object being\n created, for debugging output purposes.\n \"\"\"\n self._description = description\n self._Reset()", "metadata": "root.MockAnything.__init__", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 415 }, { "content": " def __str__(self):\n return \"<MockAnything instance at %s>\" % id(self)", "metadata": "root.MockAnything.__str__", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 425 }, { "content": " def __repr__(self):\n return '<MockAnything instance>'", "metadata": "root.MockAnything.__repr__", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 428 }, { "content": " def __getattr__(self, method_name):\n \"\"\"Intercept method calls on this object.\n\n A new MockMethod is returned that is aware of the MockAnything's\n state (record or replay). The call will be recorded or replayed\n by the MockMethod's __call__.\n\n Args:\n # method name: the name of the method being called.\n method_name: str\n\n Returns:\n A new MockMethod aware of MockAnything's state (record or replay).\n \"\"\"\n\n return self._CreateMockMethod(method_name)", "metadata": "root.MockAnything.__getattr__", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 431 }, { "content": " def _CreateMockMethod(self, method_name, method_to_mock=None):\n \"\"\"Create a new mock method call and return it.\n\n Args:\n # method_name: the name of the method being called.\n # method_to_mock: The actual method being mocked, used for introspection.\n method_name: str\n method_to_mock: a method object\n\n Returns:\n A new MockMethod aware of MockAnything's state (record or replay).\n \"\"\"\n\n return MockMethod(method_name, self._expected_calls_queue,\n self._replay_mode, method_to_mock=method_to_mock,\n description=self._description)", "metadata": "root.MockAnything._CreateMockMethod", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 448 }, { "content": " def __nonzero__(self):\n \"\"\"Return 1 for nonzero so the mock can be used as a conditional.\"\"\"\n\n return 1", "metadata": "root.MockAnything.__nonzero__", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 465 }, { "content": " def __eq__(self, rhs):\n \"\"\"Provide custom logic to compare objects.\"\"\"\n\n return (isinstance(rhs, MockAnything) and\n self._replay_mode == rhs._replay_mode and\n self._expected_calls_queue == rhs._expected_calls_queue)", "metadata": "root.MockAnything.__eq__", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 470 }, { "content": " def __ne__(self, rhs):\n \"\"\"Provide custom logic to compare objects.\"\"\"\n\n return not self == rhs", "metadata": "root.MockAnything.__ne__", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 477 }, { "content": " def _Replay(self):\n \"\"\"Start replaying expected method calls.\"\"\"\n\n self._replay_mode = True", "metadata": "root.MockAnything._Replay", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 482 }, { "content": " def _Verify(self):\n \"\"\"Verify that all of the expected calls have been made.\n\n Raises:\n ExpectedMethodCallsError: if there are still more method calls in the\n expected queue.\n \"\"\"\n\n # If the list of expected calls is not empty, raise an exception\n if self._expected_calls_queue:\n # The last MultipleTimesGroup is not popped from the queue.\n if (len(self._expected_calls_queue) == 1 and\n isinstance(self._expected_calls_queue[0], MultipleTimesGroup) and\n self._expected_calls_queue[0].IsSatisfied()):\n pass\n else:\n raise ExpectedMethodCallsError(self._expected_calls_queue)", "metadata": "root.MockAnything._Verify", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 487 }, { "content": " def _Reset(self):\n \"\"\"Reset the state of this mock to record mode with an empty queue.\"\"\"\n\n # Maintain a list of method calls we are expecting\n self._expected_calls_queue = deque()\n\n # Make sure we are in setup mode, not replay mode\n self._replay_mode = False", "metadata": "root.MockAnything._Reset", "header": "['class', 'MockAnything', ':', '___EOS___']", "index": 505 }, { "content": "class MockObject(MockAnything, object):\n \"\"\"A mock object that simulates the public/protected interface of a class.\"\"\"\n\n\n\n\n\n\n\n\n\n", "metadata": "root.MockObject", "header": "['module', '___EOS___']", "index": 515 }, { "content": " def __init__(self, class_to_mock, attrs={}):\n \"\"\"Initialize a mock object.\n\n This determines the methods and properties of the class and stores them.\n\n Args:\n # class_to_mock: class to be mocked\n class_to_mock: class\n attrs: dict of attribute names to values that will be set on the mock\n object. Only public attributes may be set.\n\n Raises:\n PrivateAttributeError: if a supplied attribute is not public.\n ValueError: if an attribute would mask an existing method.\n \"\"\"\n\n # This is used to hack around the mixin/inheritance of MockAnything, which\n # is not a proper object (it can be anything. :-)\n MockAnything.__dict__['__init__'](self)\n\n # Get a list of all the public and special methods we should mock.\n self._known_methods = set()\n self._known_vars = set()\n self._class_to_mock = class_to_mock\n try:\n self._description = class_to_mock.__name__\n # If class_to_mock is a mock itself, then we'll get an UnknownMethodCall\n # error here from the underlying call to __getattr__('__name__')\n except (UnknownMethodCallError, AttributeError):\n try:\n self._description = type(class_to_mock).__name__\n except AttributeError:\n pass\n\n for method in dir(class_to_mock):\n attr = getattr(class_to_mock, method)\n if callable(attr):\n self._known_methods.add(method)\n elif not (type(attr) is property):\n # treating properties as class vars makes little sense.\n self._known_vars.add(method)\n\n # Set additional attributes at instantiation time; this is quicker\n # than manually setting attributes that are normally created in\n # __init__.\n for attr, value in attrs.items():\n if attr.startswith(\"_\"):\n raise PrivateAttributeError(attr)\n elif attr in self._known_methods:\n raise ValueError(\"'%s' is a method of '%s' objects.\" % (attr,\n class_to_mock))\n else:\n setattr(self, attr, value)", "metadata": "root.MockObject.__init__", "header": "['class', 'MockObject', '(', 'MockAnything', ',', 'object', ')', ':', '___EOS___']", "index": 518 }, { "content": " def __getattr__(self, name):\n \"\"\"Intercept attribute request on this object.\n\n If the attribute is a public class variable, it will be returned and not\n recorded as a call.\n\n If the attribute is not a variable, it is handled like a method\n call. The method name is checked against the set of mockable\n methods, and a new MockMethod is returned that is aware of the\n MockObject's state (record or replay). The call will be recorded\n or replayed by the MockMethod's __call__.\n\n Args:\n # name: the name of the attribute being requested.\n name: str\n\n Returns:\n Either a class variable or a new MockMethod that is aware of the state\n of the mock (record or replay).\n\n Raises:\n UnknownMethodCallError if the MockObject does not mock the requested\n method.\n \"\"\"\n\n if name in self._known_vars:\n return getattr(self._class_to_mock, name)\n\n if name in self._known_methods:\n return self._CreateMockMethod(\n name,\n method_to_mock=getattr(self._class_to_mock, name))\n\n raise UnknownMethodCallError(name)", "metadata": "root.MockObject.__getattr__", "header": "['class', 'MockObject', '(', 'MockAnything', ',', 'object', ')', ':', '___EOS___']", "index": 572 }, { "content": " def __eq__(self, rhs):\n \"\"\"Provide custom logic to compare objects.\"\"\"\n\n return (isinstance(rhs, MockObject) and\n self._class_to_mock == rhs._class_to_mock and\n self._replay_mode == rhs._replay_mode and\n self._expected_calls_queue == rhs._expected_calls_queue)", "metadata": "root.MockObject.__eq__", "header": "['class', 'MockObject', '(', 'MockAnything', ',', 'object', ')', ':', '___EOS___']", "index": 607 }, { "content": " def __setitem__(self, key, value):\n \"\"\"Provide custom logic for mocking classes that support item assignment.\n\n Args:\n key: Key to set the value for.\n value: Value to set.\n\n Returns:\n Expected return value in replay mode. A MockMethod object for the\n __setitem__ method that has already been called if not in replay mode.\n\n Raises:\n TypeError if the underlying class does not support item assignment.\n UnexpectedMethodCallError if the object does not expect the call to\n __setitem__.\n\n \"\"\"\n # Verify the class supports item assignment.\n if '__setitem__' not in dir(self._class_to_mock):\n raise TypeError('object does not support item assignment')\n\n # If we are in replay mode then simply call the mock __setitem__ method.\n if self._replay_mode:\n return MockMethod('__setitem__', self._expected_calls_queue,\n self._replay_mode)(key, value)\n\n\n # Otherwise, create a mock method __setitem__.\n return self._CreateMockMethod('__setitem__')(key, value)", "metadata": "root.MockObject.__setitem__", "header": "['class', 'MockObject', '(', 'MockAnything', ',', 'object', ')', ':', '___EOS___']", "index": 615 }, { "content": " def __getitem__(self, key):\n \"\"\"Provide custom logic for mocking classes that are subscriptable.\n\n Args:\n key: Key to return the value for.\n\n Returns:\n Expected return value in replay mode. A MockMethod object for the\n __getitem__ method that has already been called if not in replay mode.\n\n Raises:\n TypeError if the underlying class is not subscriptable.\n UnexpectedMethodCallError if the object does not expect the call to\n __getitem__.\n\n \"\"\"\n # Verify the class supports item assignment.\n if '__getitem__' not in dir(self._class_to_mock):\n raise TypeError('unsubscriptable object')\n\n # If we are in replay mode then simply call the mock __getitem__ method.\n if self._replay_mode:\n return MockMethod('__getitem__', self._expected_calls_queue,\n self._replay_mode)(key)\n\n\n # Otherwise, create a mock method __getitem__.\n return self._CreateMockMethod('__getitem__')(key)", "metadata": "root.MockObject.__getitem__", "header": "['class', 'MockObject', '(', 'MockAnything', ',', 'object', ')', ':', '___EOS___']", "index": 645 }, { "content": " def __iter__(self):\n \"\"\"Provide custom logic for mocking classes that are iterable.\n\n Returns:\n Expected return value in replay mode. A MockMethod object for the\n __iter__ method that has already been called if not in replay mode.\n\n Raises:\n TypeError if the underlying class is not iterable.\n UnexpectedMethodCallError if the object does not expect the call to\n __iter__.\n\n \"\"\"\n methods = dir(self._class_to_mock)\n\n # Verify the class supports iteration.\n if '__iter__' not in methods:\n # If it doesn't have iter method and we are in replay method, then try to\n # iterate using subscripts.\n if '__getitem__' not in methods or not self._replay_mode:\n raise TypeError('not iterable object')\n else:\n results = []\n index = 0\n try:\n while True:\n results.append(self[index])\n index += 1\n except IndexError:\n return iter(results)\n\n # If we are in replay mode then simply call the mock __iter__ method.\n if self._replay_mode:\n return MockMethod('__iter__', self._expected_calls_queue,\n self._replay_mode)()\n\n\n # Otherwise, create a mock method __iter__.\n return self._CreateMockMethod('__iter__')()", "metadata": "root.MockObject.__iter__", "header": "['class', 'MockObject', '(', 'MockAnything', ',', 'object', ')', ':', '___EOS___']", "index": 674 }, { "content": " def __contains__(self, key):\n \"\"\"Provide custom logic for mocking classes that contain items.\n\n Args:\n key: Key to look in container for.\n\n Returns:\n Expected return value in replay mode. A MockMethod object for the\n __contains__ method that has already been called if not in replay mode.\n\n Raises:\n TypeError if the underlying class does not implement __contains__\n UnexpectedMethodCaller if the object does not expect the call to\n __contains__.\n\n \"\"\"\n contains = self._class_to_mock.__dict__.get('__contains__', None)\n\n if contains is None:\n raise TypeError('unsubscriptable object')\n\n if self._replay_mode:\n return MockMethod('__contains__', self._expected_calls_queue,\n self._replay_mode)(key)\n\n return self._CreateMockMethod('__contains__')(key)", "metadata": "root.MockObject.__contains__", "header": "['class', 'MockObject', '(', 'MockAnything', ',', 'object', ')', ':', '___EOS___']", "index": 715 }, { "content": " def __call__(self, *params, **named_params):\n \"\"\"Provide custom logic for mocking classes that are callable.\"\"\"\n\n # Verify the class we are mocking is callable.\n callable = hasattr(self._class_to_mock, '__call__')\n if not callable:\n raise TypeError('Not callable')\n\n # Because the call is happening directly on this object instead of a method,\n # the call on the mock method is made right here\n\n # If we are mocking a Function, then use the function, and not the\n # __call__ method\n method = None\n if type(self._class_to_mock) == types.FunctionType:\n method = self._class_to_mock;\n else:\n method = getattr(self._class_to_mock, '__call__')\n mock_method = self._CreateMockMethod('__call__', method_to_mock=method)\n\n return mock_method(*params, **named_params)", "metadata": "root.MockObject.__call__", "header": "['class', 'MockObject', '(', 'MockAnything', ',', 'object', ')', ':', '___EOS___']", "index": 742 }, { "content": " @property\n def __class__(self):\n \"\"\"Return the class that is being mocked.\"\"\"\n\n return self._class_to_mock", "metadata": "root.MockObject.__class__", "header": "['class', 'MockObject', '(', 'MockAnything', ',', 'object', ')', ':', '___EOS___']", "index": 764 }, { "content": "class _MockObjectFactory(MockObject):\n \"\"\"A MockObjectFactory creates mocks and verifies __init__ params.\n\n A MockObjectFactory removes the boiler plate code that was previously\n necessary to stub out direction instantiation of a class.\n\n The MockObjectFactory creates new MockObjects when called and verifies the\n __init__ params are correct when in record mode. When replaying, existing\n mocks are returned, and the __init__ params are verified.\n\n See StubOutWithMock vs StubOutClassWithMocks for more detail.\n \"\"\"\n\n\n", "metadata": "root._MockObjectFactory", "header": "['module', '___EOS___']", "index": 771 }, { "content": " def __init__(self, class_to_mock, mox_instance):\n MockObject.__init__(self, class_to_mock)\n self._mox = mox_instance\n self._instance_queue = deque()", "metadata": "root._MockObjectFactory.__init__", "header": "['class', '_MockObjectFactory', '(', 'MockObject', ')', ':', '___EOS___']", "index": 784 }, { "content": " def __call__(self, *params, **named_params):\n \"\"\"Instantiate and record that a new mock has been created.\"\"\"\n\n method = getattr(self._class_to_mock, '__init__')\n mock_method = self._CreateMockMethod('__init__', method_to_mock=method)\n # Note: calling mock_method() is deferred in order to catch the\n # empty instance_queue first.\n\n if self._replay_mode:\n if not self._instance_queue:\n raise UnexpectedMockCreationError(self._class_to_mock, *params,\n **named_params)\n\n mock_method(*params, **named_params)\n\n return self._instance_queue.pop()\n else:\n mock_method(*params, **named_params)\n\n instance = self._mox.CreateMock(self._class_to_mock)\n self._instance_queue.appendleft(instance)\n return instance", "metadata": "root._MockObjectFactory.__call__", "header": "['class', '_MockObjectFactory', '(', 'MockObject', ')', ':', '___EOS___']", "index": 789 }, { "content": " def _Verify(self):\n \"\"\"Verify that all mocks have been created.\"\"\"\n if self._instance_queue:\n raise ExpectedMockCreationError(self._instance_queue)\n super(_MockObjectFactory, self)._Verify()", "metadata": "root._MockObjectFactory._Verify", "header": "['class', '_MockObjectFactory', '(', 'MockObject', ')', ':', '___EOS___']", "index": 812 }, { "content": "class Comparator:\n \"\"\"Base class for all Mox comparators.\n\n A Comparator can be used as a parameter to a mocked method when the exact\n value is not known. For example, the code you are testing might build up a\n long SQL string that is passed to your mock DAO. You're only interested that\n the IN clause contains the proper primary keys, so you can set your mock\n up as follows:\n\n mock_dao.RunQuery(StrContains('IN (1, 2, 4, 5)')).AndReturn(mock_result)\n\n Now whatever query is passed in must contain the string 'IN (1, 2, 4, 5)'.\n\n A Comparator may replace one or more parameters, for example:\n # return at most 10 rows\n mock_dao.RunQuery(StrContains('SELECT'), 10)\n\n or\n\n # Return some non-deterministic number of rows\n mock_dao.RunQuery(StrContains('SELECT'), IsA(int))\n \"\"\"\n\n\n", "metadata": "root.Comparator", "header": "['module', '___EOS___']", "index": 1182 }, { "content": " def equals(self, rhs):\n \"\"\"Special equals method that all comparators must implement.\n\n Args:\n rhs: any python object\n \"\"\"\n\n raise NotImplementedError, 'method must be implemented by a subclass.'", "metadata": "root.Comparator.equals", "header": "['class', 'Comparator', ':', '___EOS___']", "index": 1205 }, { "content": " def __eq__(self, rhs):\n return self.equals(rhs)", "metadata": "root.Comparator.__eq__", "header": "['class', 'Comparator', ':', '___EOS___']", "index": 1214 }, { "content": " def __ne__(self, rhs):\n return not self.equals(rhs)", "metadata": "root.Comparator.__ne__", "header": "['class', 'Comparator', ':', '___EOS___']", "index": 1217 }, { "content": "class IsA(Comparator):\n \"\"\"This class wraps a basic Python type or class. It is used to verify\n that a parameter is of the given type or class.\n\n Example:\n mock_dao.Connect(IsA(DbConnectInfo))\n \"\"\"\n\n\n", "metadata": "root.IsA", "header": "['module', '___EOS___']", "index": 1221 }, { "content": " def __init__(self, class_name):\n \"\"\"Initialize IsA\n\n Args:\n class_name: basic python type or a class\n \"\"\"\n\n self._class_name = class_name", "metadata": "root.IsA.__init__", "header": "['class', 'IsA', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1229 }, { "content": " def equals(self, rhs):\n \"\"\"Check to see if the RHS is an instance of class_name.\n\n Args:\n # rhs: the right hand side of the test\n rhs: object\n\n Returns:\n bool\n \"\"\"\n\n try:\n return isinstance(rhs, self._class_name)\n except TypeError:\n # Check raw types if there was a type error. This is helpful for\n # things like cStringIO.StringIO.\n return type(rhs) == type(self._class_name)", "metadata": "root.IsA.equals", "header": "['class', 'IsA', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1238 }, { "content": " def __repr__(self):\n return str(self._class_name)", "metadata": "root.IsA.__repr__", "header": "['class', 'IsA', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1256 }, { "content": "class IsAlmost(Comparator):\n \"\"\"Comparison class used to check whether a parameter is nearly equal\n to a given value. Generally useful for floating point numbers.\n\n Example mock_dao.SetTimeout((IsAlmost(3.9)))\n \"\"\"\n\n\n", "metadata": "root.IsAlmost", "header": "['module', '___EOS___']", "index": 1259 }, { "content": " def __init__(self, float_value, places=7):\n \"\"\"Initialize IsAlmost.\n\n Args:\n float_value: The value for making the comparison.\n places: The number of decimal places to round to.\n \"\"\"\n\n self._float_value = float_value\n self._places = places", "metadata": "root.IsAlmost.__init__", "header": "['class', 'IsAlmost', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1266 }, { "content": " def equals(self, rhs):\n \"\"\"Check to see if RHS is almost equal to float_value\n\n Args:\n rhs: the value to compare to float_value\n\n Returns:\n bool\n \"\"\"\n\n try:\n return round(rhs-self._float_value, self._places) == 0\n except TypeError:\n # This is probably because either float_value or rhs is not a number.\n return False", "metadata": "root.IsAlmost.equals", "header": "['class', 'IsAlmost', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1277 }, { "content": " def __repr__(self):\n return str(self._float_value)", "metadata": "root.IsAlmost.__repr__", "header": "['class', 'IsAlmost', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1293 }, { "content": "class StrContains(Comparator):\n \"\"\"Comparison class used to check whether a substring exists in a\n string parameter. This can be useful in mocking a database with SQL\n passed in as a string parameter, for example.\n\n Example:\n mock_dao.RunQuery(StrContains('IN (1, 2, 4, 5)')).AndReturn(mock_result)\n \"\"\"\n\n\n", "metadata": "root.StrContains", "header": "['module', '___EOS___']", "index": 1296 }, { "content": " def __init__(self, search_string):\n \"\"\"Initialize.\n\n Args:\n # search_string: the string you are searching for\n search_string: str\n \"\"\"\n\n self._search_string = search_string", "metadata": "root.StrContains.__init__", "header": "['class', 'StrContains', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1305 }, { "content": " def equals(self, rhs):\n \"\"\"Check to see if the search_string is contained in the rhs string.\n\n Args:\n # rhs: the right hand side of the test\n rhs: object\n\n Returns:\n bool\n \"\"\"\n\n try:\n return rhs.find(self._search_string) > -1\n except Exception:\n return False", "metadata": "root.StrContains.equals", "header": "['class', 'StrContains', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1315 }, { "content": " def __repr__(self):\n return '<str containing \\'%s\\'>' % self._search_string", "metadata": "root.StrContains.__repr__", "header": "['class', 'StrContains', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1331 }, { "content": "class Regex(Comparator):\n \"\"\"Checks if a string matches a regular expression.\n\n This uses a given regular expression to determine equality.\n \"\"\"\n\n\n", "metadata": "root.Regex", "header": "['module', '___EOS___']", "index": 1335 }, { "content": " def __init__(self, pattern, flags=0):\n \"\"\"Initialize.\n\n Args:\n # pattern is the regular expression to search for\n pattern: str\n # flags passed to re.compile function as the second argument\n flags: int\n \"\"\"\n\n self.regex = re.compile(pattern, flags=flags)", "metadata": "root.Regex.__init__", "header": "['class', 'Regex', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1341 }, { "content": " def equals(self, rhs):\n \"\"\"Check to see if rhs matches regular expression pattern.\n\n Returns:\n bool\n \"\"\"\n\n return self.regex.search(rhs) is not None", "metadata": "root.Regex.equals", "header": "['class', 'Regex', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1353 }, { "content": " def __repr__(self):\n s = '<regular expression \\'%s\\'' % self.regex.pattern\n if self.regex.flags:\n s += ', flags=%d' % self.regex.flags\n s += '>'\n return s", "metadata": "root.Regex.__repr__", "header": "['class', 'Regex', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1362 }, { "content": "class In(Comparator):\n \"\"\"Checks whether an item (or key) is in a list (or dict) parameter.\n\n Example:\n mock_dao.GetUsersInfo(In('expectedUserName')).AndReturn(mock_result)\n \"\"\"\n\n\n", "metadata": "root.In", "header": "['module', '___EOS___']", "index": 1370 }, { "content": " def __init__(self, key):\n \"\"\"Initialize.\n\n Args:\n # key is any thing that could be in a list or a key in a dict\n \"\"\"\n\n self._key = key", "metadata": "root.In.__init__", "header": "['class', 'In', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1377 }, { "content": " def equals(self, rhs):\n \"\"\"Check to see whether key is in rhs.\n\n Args:\n rhs: dict\n\n Returns:\n bool\n \"\"\"\n\n return self._key in rhs", "metadata": "root.In.equals", "header": "['class', 'In', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1386 }, { "content": " def __repr__(self):\n return '<sequence or map containing \\'%s\\'>' % self._key", "metadata": "root.In.__repr__", "header": "['class', 'In', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1398 }, { "content": "class Not(Comparator):\n \"\"\"Checks whether a predicates is False.\n\n Example:\n mock_dao.UpdateUsers(Not(ContainsKeyValue('stevepm', stevepm_user_info)))\n \"\"\"\n\n\n", "metadata": "root.Not", "header": "['module', '___EOS___']", "index": 1402 }, { "content": " def __init__(self, predicate):\n \"\"\"Initialize.\n\n Args:\n # predicate: a Comparator instance.\n \"\"\"\n\n assert isinstance(predicate, Comparator), (\"predicate %r must be a\"\n \" Comparator.\" % predicate)\n self._predicate = predicate", "metadata": "root.Not.__init__", "header": "['class', 'Not', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1409 }, { "content": " def equals(self, rhs):\n \"\"\"Check to see whether the predicate is False.\n\n Args:\n rhs: A value that will be given in argument of the predicate.\n\n Returns:\n bool\n \"\"\"\n\n return not self._predicate.equals(rhs)", "metadata": "root.Not.equals", "header": "['class', 'Not', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1420 }, { "content": " def __repr__(self):\n return '<not \\'%s\\'>' % self._predicate", "metadata": "root.Not.__repr__", "header": "['class', 'Not', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1432 }, { "content": "class ContainsKeyValue(Comparator):\n \"\"\"Checks whether a key/value pair is in a dict parameter.\n\n Example:\n mock_dao.UpdateUsers(ContainsKeyValue('stevepm', stevepm_user_info))\n \"\"\"\n\n\n", "metadata": "root.ContainsKeyValue", "header": "['module', '___EOS___']", "index": 1436 }, { "content": " def __init__(self, key, value):\n \"\"\"Initialize.\n\n Args:\n # key: a key in a dict\n # value: the corresponding value\n \"\"\"\n\n self._key = key\n self._value = value", "metadata": "root.ContainsKeyValue.__init__", "header": "['class', 'ContainsKeyValue', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1443 }, { "content": " def equals(self, rhs):\n \"\"\"Check whether the given key/value pair is in the rhs dict.\n\n Returns:\n bool\n \"\"\"\n\n try:\n return rhs[self._key] == self._value\n except Exception:\n return False", "metadata": "root.ContainsKeyValue.equals", "header": "['class', 'ContainsKeyValue', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1454 }, { "content": " def __repr__(self):\n return '<map containing the entry \\'%s: %s\\'>' % (self._key, self._value)", "metadata": "root.ContainsKeyValue.__repr__", "header": "['class', 'ContainsKeyValue', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1466 }, { "content": "class ContainsAttributeValue(Comparator):\n \"\"\"Checks whether a passed parameter contains attributes with a given value.\n\n Example:\n mock_dao.UpdateSomething(ContainsAttribute('stevepm', stevepm_user_info))\n \"\"\"\n\n", "metadata": "root.ContainsAttributeValue", "header": "['module', '___EOS___']", "index": 1470 }, { "content": " def __init__(self, key, value):\n \"\"\"Initialize.\n\n Args:\n # key: an attribute name of an object\n # value: the corresponding value\n \"\"\"\n\n self._key = key\n self._value = value", "metadata": "root.ContainsAttributeValue.__init__", "header": "['class', 'ContainsAttributeValue', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1477 }, { "content": " def equals(self, rhs):\n \"\"\"Check whether the given attribute has a matching value in the rhs object.\n\n Returns:\n bool\n \"\"\"\n\n try:\n return getattr(rhs, self._key) == self._value\n except Exception:\n return False", "metadata": "root.ContainsAttributeValue.equals", "header": "['class', 'ContainsAttributeValue', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1488 }, { "content": "class SameElementsAs(Comparator):\n \"\"\"Checks whether iterables contain the same elements (ignoring order).\n\n Example:\n mock_dao.ProcessUsers(SameElementsAs('stevepm', 'salomaki'))\n \"\"\"\n\n\n", "metadata": "root.SameElementsAs", "header": "['module', '___EOS___']", "index": 1501 }, { "content": " def __init__(self, expected_seq):\n \"\"\"Initialize.\n\n Args:\n expected_seq: a sequence\n \"\"\"\n\n self._expected_seq = expected_seq", "metadata": "root.SameElementsAs.__init__", "header": "['class', 'SameElementsAs', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1508 }, { "content": " def equals(self, actual_seq):\n \"\"\"Check to see whether actual_seq has same elements as expected_seq.\n\n Args:\n actual_seq: sequence\n\n Returns:\n bool\n \"\"\"\n\n try:\n expected = dict([(element, None) for element in self._expected_seq])\n actual = dict([(element, None) for element in actual_seq])\n except TypeError:\n # Fall back to slower list-compare if any of the objects are unhashable.\n expected = list(self._expected_seq)\n actual = list(actual_seq)\n expected.sort()\n actual.sort()\n return expected == actual", "metadata": "root.SameElementsAs.equals", "header": "['class', 'SameElementsAs', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1517 }, { "content": " def __repr__(self):\n return '<sequence with same elements as \\'%s\\'>' % self._expected_seq", "metadata": "root.SameElementsAs.__repr__", "header": "['class', 'SameElementsAs', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1538 }, { "content": "class And(Comparator):\n \"\"\"Evaluates one or more Comparators on RHS and returns an AND of the results.\n \"\"\"\n\n\n", "metadata": "root.And", "header": "['module', '___EOS___']", "index": 1542 }, { "content": " def __init__(self, *args):\n \"\"\"Initialize.\n\n Args:\n *args: One or more Comparator\n \"\"\"\n\n self._comparators = args", "metadata": "root.And.__init__", "header": "['class', 'And', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1546 }, { "content": " def equals(self, rhs):\n \"\"\"Checks whether all Comparators are equal to rhs.\n\n Args:\n # rhs: can be anything\n\n Returns:\n bool\n \"\"\"\n\n for comparator in self._comparators:\n if not comparator.equals(rhs):\n return False\n\n return True", "metadata": "root.And.equals", "header": "['class', 'And', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1555 }, { "content": " def __repr__(self):\n return '<AND %s>' % str(self._comparators)", "metadata": "root.And.__repr__", "header": "['class', 'And', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1571 }, { "content": "class Or(Comparator):\n \"\"\"Evaluates one or more Comparators on RHS and returns an OR of the results.\n \"\"\"\n\n\n", "metadata": "root.Or", "header": "['module', '___EOS___']", "index": 1575 }, { "content": " def __init__(self, *args):\n \"\"\"Initialize.\n\n Args:\n *args: One or more Mox comparators\n \"\"\"\n\n self._comparators = args", "metadata": "root.Or.__init__", "header": "['class', 'Or', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1579 }, { "content": " def equals(self, rhs):\n \"\"\"Checks whether any Comparator is equal to rhs.\n\n Args:\n # rhs: can be anything\n\n Returns:\n bool\n \"\"\"\n\n for comparator in self._comparators:\n if comparator.equals(rhs):\n return True\n\n return False", "metadata": "root.Or.equals", "header": "['class', 'Or', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1588 }, { "content": " def __repr__(self):\n return '<OR %s>' % str(self._comparators)", "metadata": "root.Or.__repr__", "header": "['class', 'Or', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1604 }, { "content": "class Func(Comparator):\n \"\"\"Call a function that should verify the parameter passed in is correct.\n\n You may need the ability to perform more advanced operations on the parameter\n in order to validate it. You can use this to have a callable validate any\n parameter. The callable should return either True or False.\n\n\n Example:\n\n def myParamValidator(param):\n # Advanced logic here\n return True\n\n mock_dao.DoSomething(Func(myParamValidator), true)\n \"\"\"\n\n\n", "metadata": "root.Func", "header": "['module', '___EOS___']", "index": 1608 }, { "content": " def __init__(self, func):\n \"\"\"Initialize.\n\n Args:\n func: callable that takes one parameter and returns a bool\n \"\"\"\n\n self._func = func", "metadata": "root.Func.__init__", "header": "['class', 'Func', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1625 }, { "content": " def equals(self, rhs):\n \"\"\"Test whether rhs passes the function test.\n\n rhs is passed into func.\n\n Args:\n rhs: any python object\n\n Returns:\n the result of func(rhs)\n \"\"\"\n\n return self._func(rhs)", "metadata": "root.Func.equals", "header": "['class', 'Func', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1634 }, { "content": " def __repr__(self):\n return str(self._func)", "metadata": "root.Func.__repr__", "header": "['class', 'Func', '(', 'Comparator', ')', ':', '___EOS___']", "index": 1648 } ]

[ { "span": "class _MockObjectFactory(MockObject):", "start_line": 771, "start_column": 0, "end_line": 771, "end_column": 37 }, { "span": "class IsA(Comparator):", "start_line": 1221, "start_column": 0, "end_line": 1221, "end_column": 22 }, { "span": "class IsAlmost(Comparator):", "start_line": 1259, "start_column": 0, "end_line": 1259, "end_column": 27 }, { "span": "class StrContains(Comparator):", "start_line": 1296, "start_column": 0, "end_line": 1296, "end_column": 30 }, { "span": "class Regex(Comparator):", "start_line": 1335, "start_column": 0, "end_line": 1335, "end_column": 24 }, { "span": "class In(Comparator):", "start_line": 1370, "start_column": 0, "end_line": 1370, "end_column": 21 }, { "span": "class Not(Comparator):", "start_line": 1402, "start_column": 0, "end_line": 1402, "end_column": 22 }, { "span": "class ContainsKeyValue(Comparator):", "start_line": 1436, "start_column": 0, "end_line": 1436, "end_column": 35 }, { "span": "class ContainsAttributeValue(Comparator):", "start_line": 1470, "start_column": 0, "end_line": 1470, "end_column": 41 }, { "span": "class SameElementsAs(Comparator):", "start_line": 1501, "start_column": 0, "end_line": 1501, "end_column": 33 }, { "span": "class And(Comparator):", "start_line": 1542, "start_column": 0, "end_line": 1542, "end_column": 22 }, { "span": "class Or(Comparator):", "start_line": 1575, "start_column": 0, "end_line": 1575, "end_column": 21 }, { "span": "class Func(Comparator):", "start_line": 1608, "start_column": 0, "end_line": 1608, "end_column": 23 } ]

[ { "span": "def __eq__(self, rhs):", "start_line": 607, "start_column": 2, "end_line": 607, "end_column": 24 }, { "span": "self._mox ", "start_line": 786, "start_column": 4, "end_line": 786, "end_column": 13 }, { "span": "self._instance_queue ", "start_line": 787, "start_column": 4, "end_line": 787, "end_column": 24 }, { "span": "def __eq__(self, rhs):", "start_line": 1214, "start_column": 2, "end_line": 1214, "end_column": 24 }, { "span": "self._class_name ", "start_line": 1236, "start_column": 4, "end_line": 1236, "end_column": 20 }, { "span": "self._float_value ", "start_line": 1274, "start_column": 4, "end_line": 1274, "end_column": 21 }, { "span": "self._places ", "start_line": 1275, "start_column": 4, "end_line": 1275, "end_column": 16 }, { "span": "self._search_string ", "start_line": 1313, "start_column": 4, "end_line": 1313, "end_column": 23 }, { "span": "self.regex ", "start_line": 1351, "start_column": 4, "end_line": 1351, "end_column": 14 }, { "span": "self._key ", "start_line": 1384, "start_column": 4, "end_line": 1384, "end_column": 13 }, { "span": "self._predicate ", "start_line": 1418, "start_column": 4, "end_line": 1418, "end_column": 19 }, { "span": "self._key ", "start_line": 1451, "start_column": 4, "end_line": 1451, "end_column": 13 }, { "span": "self._value ", "start_line": 1452, "start_column": 4, "end_line": 1452, "end_column": 15 }, { "span": "self._key ", "start_line": 1485, "start_column": 4, "end_line": 1485, "end_column": 13 }, { "span": "self._value ", "start_line": 1486, "start_column": 4, "end_line": 1486, "end_column": 15 }, { "span": "self._expected_seq ", "start_line": 1515, "start_column": 4, "end_line": 1515, "end_column": 22 }, { "span": "self._comparators ", "start_line": 1553, "start_column": 4, "end_line": 1553, "end_column": 21 }, { "span": "self._comparators ", "start_line": 1586, "start_column": 4, "end_line": 1586, "end_column": 21 }, { "span": "self._func ", "start_line": 1632, "start_column": 4, "end_line": 1632, "end_column": 14 } ]

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[ { "content": " def test_1(self):\n\timport gc\n\tfrom sys import getrefcount as grc\n\n\tsupport.TestCase.setUp(self)\n\tsets = self.guppy.sets\n\theapdefs = getattr(sets.setsc, '_NyHeapDefs_'),\n\troot = []\n\theapyc = self.guppy.heapy.heapyc\n\tnodeset = sets.mutnodeset\n\tnodegraph = heapyc.NodeGraph\n\t\n\tclass T(object):\n\t __slots__ = 'a', '_hiding_tag_', 'tonly'\n\t pass\n\n\tclass U(T):\n\t __slots__ = 'b',\n\t pass\n\n\tclass V(object):\n\t __slots__ = 'c',\n\n\n\tgc.collect()\n\n\tns = nodeset()\n\ta = [ns]\n\ta.append(a)\n\tb = []\n\the = []\n\tc = []\n\tt = T()\n\ttonly = []\n\n\tt.a = a\n\tt._hiding_tag_ = he\n\tt.tonly = tonly\n\n\tu = U()\n\tu.a = a\n\tu._hiding_tag_ = he\n\tu.b = b\n\n\tv = V()\n\tv.c = c\n\n\ta = [x for x in [list]]\n\tdel x\n\n\tli = [he, a, b, c, t, u, v, T, U, V, ns, nodeset, list]\n\trcli0 = [grc(x) for x in li]\n\tdel x\n\n\tns |= li + range(10000, 10010)\n\troot.extend(li)\n\n\trcli = [grc(x) for x in li]\n\tdel x\n\n\trec = nodeset([x for x in li])\n\tx = None\n\n\trec.append(rec)\n\tns.add(rec)\n\trec._hiding_tag_ = rec\n\n\tif 1:\n\t hv = heapyc.HeapView(root, heapdefs)\n\t hv.register__hiding_tag__type(T)\n\t h = hv.heap()\n\t assert a in h\n\t assert c in h\n\t assert tonly in h\n\t hv._hiding_tag_ = he\n\t h = hv.heap()\n\t del x\n\t del h\n\t del hv\n\n\n\tns.discard(rec)\n\trec = None\n\tgc.collect()\n\n\tnrcli = [grc(x) for x in li]\n\tdel x\n\tself.aseq(rcli, nrcli)\n\n\troot[:]=[]\n\tns.clear()\n\n\tnrcli0 = [grc(x) for x in li]\n\tdel x\n\t\n\tself.aseq(rcli0, nrcli0)", "metadata": "root.TestLeak.test_1", "header": "['class', 'TestLeak', '(', 'support', '.', 'TestCase', ')', ':', '___EOS___']", "index": 251 } ]

[ { "span": "pass", "start_line": 265, "start_column": 5, "end_line": 265, "end_column": 9 }, { "span": "pass", "start_line": 269, "start_column": 5, "end_line": 269, "end_column": 9 } ]

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