Module Import alias ImportFrom alias alias ImportFrom alias alias alias alias ImportFrom alias alias ImportFrom alias If UnaryOpNot CompareGt Call NameLoad AttributeLoad NameLoad attr Num body Print Str Expr Call AttributeLoad NameLoad attr Num Assign NameStore Num If CompareGt Call NameLoad AttributeLoad NameLoad attr Num body Assign NameStore Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Index Num Assign NameStore Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Index Num Assign NameStore Call NameLoad NameLoad For TupleStore NameStore NameStore Call NameLoad NameLoad Lambda arguments args NameParam defaults AttributeLoad NameLoad attr body Assign NameStore Str Assign NameStore Str Assign NameStore Call NameLoad NameLoad Assign NameStore Call NameLoad Lambda arguments args NameParam defaults CompareGtE AttributeLoad NameLoad attr NameLoad NameLoad Assign NameStore Call NameLoad Call NameLoad Str NameLoad If Call NameLoad Call NameLoad NameLoad Call NameLoad SubscriptLoad NameLoad Slice Num SubscriptLoad NameLoad Slice Num body Assign NameStore Str Assign NameStore Str Print Call AttributeLoad Str attr Call NameLoad Call NameLoad BinOpAdd Str Call AttributeLoad Str attr ListLoad NameLoad NameLoad Call NameLoad NameLoad NameLoad
N/A N/A sys nucio getNucmerAlignmentIterator nucRecordToString itertools groupby imap izip starmap operator attrgetter eq misc append_str N/A N/A N/A N/A len N/A sys argv 1 N/A N/A pb_filter_for_shred.py all.sc [significant_alignment_length(int)(default:200)] N/A N/A N/A sys exit 1 N/A SIG_ALN_LEN 200 N/A N/A N/A len N/A sys argv 2 N/A N/A SIG_ALN_LEN N/A int N/A N/A sys argv N/A 2 N/A afh N/A open N/A N/A sys argv N/A 1 N/A alignment_it N/A getNucmerAlignmentIterator afh N/A N/A pbname alignment N/A groupby alignment_it N/A N/A N/A x N/A N/A x sname N/A N/A status KEEP N/A message DEFAULT N/A raw_alignments N/A list alignment N/A al_list N/A filter N/A N/A N/A al N/A N/A N/A al qalen SIG_ALN_LEN raw_alignments N/A utg_list N/A map N/A attrgetter qname al_list N/A N/A all N/A starmap eq N/A izip N/A utg_list N/A -1 N/A utg_list N/A 1 N/A N/A status REMOVE N/A message ALL ALIGNMENTS TO A SINGLE UTG N/A N/A N/A join N/A imap N/A append_str N/A N/A N/A join N/A status message N/A imap nucRecordToString raw_alignments