Module Import alias Assign NameStore Call AttributeLoad NameLoad attr keyword Str Assign NameStore ListLoad Num Num Num Num Assign NameStore Dict Str Str Str Str Str Str Num Num Num Num Num Num Assign NameStore Dict Str Str Str Str Str Str Str Str Str Str Str Str Num Num Num Num Num Num Num Num Num Num Num Num Assign NameStore Dict Str Str NameLoad NameLoad Assign NameStore Dict Str Str NameLoad NameLoad Assign NameStore Dict Str Str NameLoad Num Assign NameStore Call AttributeLoad NameLoad attr Str NameLoad Assign NameStore Call AttributeLoad NameLoad attr keyword NameLoad keyword Num Assign NameStore Call AttributeLoad NameLoad attr keyword NameLoad keyword NameLoad Expr Call NameLoad
N/A N/A pyvolve N/A my_tree N/A N/A pyvolve read_tree file file_with_tree.tre N/A nuc_freqs N/A 0.334 0.12 0.41 0.136 N/A custom_mutation_sym N/A AC AG AT CG CT GT 1.5 2.5 0.5 0.8 0.99 1.56 N/A custom_mutation_asym N/A AC CA AG GA AT TA CG GC CT TC GT TC 1.5 0.8 2.5 1.2 0.5 1.1 0.8 0.9 0.99 2.3 1.56 2.56 N/A parameters1 N/A state_freqs mu nuc_freqs custom_mutation_sym N/A parameters2 N/A state_freqs mu nuc_freqs custom_mutation_asym N/A parameters3 N/A state_freqs kappa nuc_freqs 4.25 N/A my_model N/A N/A pyvolve Model mutsel parameters3 N/A my_partition N/A N/A pyvolve Partition models my_model size 250 N/A my_evolver N/A N/A pyvolve Evolver partitions my_partition tree my_tree N/A N/A my_evolver