Module FunctionDef arguments args NameParam NameParam NameParam NameParam NameParam defaults body Expr Str Import alias Import alias Import alias Assign NameStore Call AttributeLoad NameLoad attr NameLoad TryFinally body Assign NameStore Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Assign NameStore AttributeLoad NameLoad attr finalbody Expr Call AttributeLoad NameLoad attr Assign NameStore Dict If CompareNotEq SubscriptLoad NameLoad Index Num Str body AugAssignAdd NameStore Str For NameStore NameLoad body If Call NameLoad NameLoad body Assign NameStore Call NameLoad Call AttributeLoad NameLoad attr NameLoad NameLoad Assign AttributeStore NameLoad attr Call NameLoad NameLoad Assign SubscriptStore NameLoad Index Call NameLoad NameLoad NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam NameParam NameParam NameParam defaults Lambda arguments args NameParam defaults Call AttributeLoad NameLoad attr Str Str NameLoad NameLoad body Expr Str If CompareIs NameLoad NameLoad body Assign NameStore Lambda arguments args NameParam defaults BinOpAdd Str NameLoad If CompareIs NameLoad NameLoad body Assign NameStore Lambda arguments args NameParam defaults BinOpAdd NameLoad SubscriptLoad NameLoad Slice Num ImportFrom alias ImportFrom alias Assign NameStore Call NameLoad NameLoad NameLoad NameLoad NameLoad NameLoad For TupleStore NameStore NameStore Call AttributeLoad NameLoad attr body Assign NameStore Call NameLoad NameLoad Assign AttributeStore NameLoad attr Call NameLoad NameLoad Assign SubscriptStore NameLoad Index SubscriptLoad NameLoad Slice Num NameLoad ImportFrom alias Expr Call AttributeLoad NameLoad attr NameLoad Expr Call AttributeLoad NameLoad attr Return NameLoad decorator_list
N/A catalog_downloads N/A N/A url fileFilter fileNamer fileDocumenter klass N/A N/A N/A returns dict of resources for downloading target data:
    url: URL to a directory that gives links to the desired data
    fileFilter: function that returns True for a desired file name
    fileNamer: function that converts a file name into desired key value
    fileDocumenter: function that returns a docstring based on file name
    klass: a Python class or function that takes file URL as a single argument,
           and returns value to store in dictionary

    example usage:
    d = catalog_downloads("http://biodb.bioinformatics.ucla.edu/PYGRDATA/",
                          lambda x: x.endswith(".txt.gz"),
                          lambda x: "Bio.MSA.UCSC."+x[:-3],
                          SourceURL)
     N/A formatter N/A htmllib N/A urllib N/A ifile N/A N/A urllib urlopen url N/A N/A N/A p N/A N/A htmllib HTMLParser N/A N/A formatter NullFormatter N/A N/A N/A p feed N/A N/A ifile read N/A l N/A p anchorlist N/A N/A N/A N/A ifile close N/A d N/A N/A N/A N/A url N/A -1 / N/A N/A url / N/A s l N/A N/A N/A fileFilter s N/A N/A o N/A klass N/A N/A urllib basejoin url s N/A N/A o __doc__ N/A fileDocumenter s N/A N/A d N/A N/A fileNamer s o N/A d N/A save_NLMSA_downloaders N/A N/A url fileFilter resourceStem fileDocumenter fileNamer N/A N/A N/A N/A x N/A N/A N/A x endswith .txt.gz Bio.MSA.UCSC. None None N/A N/A save NLMSA downloader / builder objects for a set
    of downloadable textdump files N/A N/A fileDocumenter None N/A N/A fileDocumenter N/A N/A N/A x N/A N/A NLMSA alignment  x N/A N/A fileNamer None N/A N/A fileNamer N/A N/A N/A x N/A N/A resourceStem N/A x N/A -3 pygr.nlmsa_utils NLMSABuilder pygr.downloader SourceURL N/A d N/A catalog_downloads url fileFilter fileNamer fileDocumenter SourceURL N/A N/A resID o N/A N/A d items N/A N/A nlmsa N/A NLMSABuilder o N/A N/A nlmsa __doc__ N/A fileDocumenter resID N/A N/A d N/A N/A resID N/A -4 nlmsa pygr worldbase N/A N/A N/A worldbase add_resource d N/A N/A N/A worldbase commit N/A d N/A