Module Expr Str ImportFrom alias ImportFrom alias ImportFrom alias alias alias Expr Call NameLoad Expr Call NameLoad Str ListLoad Str Str Str Expr Call NameLoad NameLoad Str Expr Call NameLoad Str ListLoad Str Str Dict Str ListLoad Str Str Expr Call NameLoad NameLoad Str Expr Call NameLoad Str Num Expr Call NameLoad Str Num For NameStore TupleLoad NameLoad NameLoad body Expr Call NameLoad NameLoad Str Str Expr Call NameLoad Call NameLoad keyword NameLoad keyword NameLoad keyword NameLoad NameLoad Expr Call NameLoad Call NameLoad keyword Str keyword NameLoad NameLoad Assign NameStore Num Assign NameStore Num Assign NameStore BinOpMult ListLoad ListLoad Num Num BinOpSub NameLoad Num Assign NameStore BinOpMult ListLoad ListLoad Num Num Num BinOpAdd BinOpSub NameLoad NameLoad Num Expr Call NameLoad Call NameLoad keyword NameLoad Str Str NameLoad NameLoad Expr Call NameLoad NameLoad Str Str Str NameLoad NameLoad Call NameLoad keyword Str Str Call NameLoad keyword Str NameLoad For NameStore Call NameLoad Num BinOpAdd NameLoad Num body Expr Call NameLoad BinOpMod Str NameLoad Call NameLoad NameLoad Str Str NameLoad Expr Call NameLoad Str Call NameLoad keyword Str keyword NameLoad Expr Call NameLoad Str Call NameLoad keyword Str If CompareEq NameLoad Str body Expr Call NameLoad NameLoad Str NameLoad Expr Call NameLoad Str
N/A N/A A version of BAX pore assembly where subunits are added to the growing
complex one at a time (contrast with bax_pore.py). Also implements cargo
transport (Smac).
 __future__ print_function pysb * pysb.macros assemble_pore_sequential pore_transport pore_species N/A N/A Model N/A N/A Monomer Bax N/A s1 s2 t N/A N/A Annotation Bax http://identifiers.org/uniprot/Q07812 N/A N/A Monomer Smac N/A loc t N/A loc N/A m c N/A N/A Annotation Smac http://identifiers.org/uniprot/Q9NR28 N/A N/A Parameter Bax_0 80000.0 N/A N/A Parameter Smac_0 100000.0 N/A p N/A Bax_0 Smac_0 N/A N/A N/A Annotation p http://identifiers.org/doi/10.1371/journal.pcbi.1002482 isDescribedBy N/A N/A Initial N/A Bax s1 None s2 None t None Bax_0 N/A N/A Initial N/A Smac loc m t None Smac_0 N/A max_size 6 N/A min_transport_size 4 N/A assembly_rates N/A N/A N/A 0.0002 0.001 N/A max_size 1 N/A transport_rates N/A N/A N/A 3e-05 0.001 10.0 N/A N/A max_size min_transport_size 1 N/A N/A assemble_pore_sequential N/A Bax t None s1 s2 max_size assembly_rates N/A N/A pore_transport Bax s1 s2 t min_transport_size max_size N/A Smac loc m t N/A Smac loc c transport_rates N/A size N/A range 1 N/A max_size 1 N/A N/A N/A Observable N/A Bax%d size N/A pore_species Bax s1 s2 size N/A N/A Observable mSmac N/A Smac loc m t None N/A N/A Observable cSmac N/A Smac loc c N/A N/A __name__ __main__ N/A N/A N/A print __doc__ model N/A N/A print 
NOTE: This model code is designed to be imported and programatically
manipulated, not executed directly. The above output is merely a
diagnostic aid. Please see run_bax_pore_sequential.py for example
usage.