Module Assign NameStore Str Assign NameStore Str Assign NameStore Num Assign NameStore Str Assign NameStore ListLoad Assign NameStore ListLoad ClassDef bases NameLoad body Expr Str Assign NameStore TupleLoad Str Str Str FunctionDef arguments args NameParam NameParam defaults body If BoolOpAnd Call NameLoad NameLoad Call AttributeLoad NameLoad attr Str body Assign AttributeStore NameLoad attr NameLoad orelse Assign AttributeStore NameLoad attr BinOpAdd NameLoad Str Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr Num decorator_list decorator_list ClassDef bases NameLoad body Expr Str Assign NameStore TupleLoad Str Str Str Str FunctionDef arguments args NameParam NameParam NameParam defaults Num body Global identifier Assign AttributeStore NameLoad attr NameLoad Assign NameStore NameLoad Assign AttributeStore NameLoad attr Num Assign AttributeStore NameLoad attr Num Assign AttributeStore NameLoad attr Call NameLoad Expr Call AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam NameParam defaults body Assign AttributeStore NameLoad attr NameLoad Expr Call AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Expr Call AttributeLoad NameLoad attr Str Assign NameStore Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr AttributeLoad NameLoad attr NameLoad AttributeLoad NameLoad attr If CompareGt NameLoad Num body AugAssignAdd AttributeStore NameLoad attr NameLoad AugAssignAdd AttributeStore NameLoad attr Num Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr AttributeLoad NameLoad attr Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam defaults body Expr Str Global identifier Global identifier Delete SubscriptDel NameLoad Slice Assign NameStore NameLoad Assign NameStore Call AttributeLoad NameLoad attr If CompareEq Call NameLoad NameLoad Num body Print Str Expr Call AttributeLoad NameLoad attr Num Expr Call AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr AttributeLoad NameLoad attr NameLoad Return NameLoad decorator_list decorator_list ClassDef bases NameLoad body Expr Str Assign NameStore TupleLoad Str Str Str Str Str Str Assign NameStore ListLoad FunctionDef arguments args NameParam NameParam NameParam NameParam NameParam NameParam defaults Str Str Str Num Num body Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr Dict decorator_list FunctionDef arguments args NameParam NameParam NameParam NameParam defaults body Expr Str Assign NameStore SubscriptLoad NameLoad Slice Assign TupleStore NameStore NameStore Call AttributeLoad NameLoad attr NameLoad NameLoad Return Call AttributeLoad NameLoad attr NameLoad NameLoad NameLoad NameLoad decorator_list FunctionDef arguments args NameParam NameParam NameParam defaults body Expr Str If CompareEq Call NameLoad NameLoad Num body Print Str Expr Call AttributeLoad NameLoad attr Num Assign NameStore Num While NameLoad body Assign NameStore SubscriptLoad NameLoad Index NameLoad If Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad body Assign NameStore SubscriptLoad AttributeLoad NameLoad attr Index NameLoad AugAssignAdd NameStore Num Assign NameStore NameLoad If CompareEq Call NameLoad NameLoad Num body Break orelse Break Return TupleLoad NameLoad NameLoad decorator_list FunctionDef arguments args NameParam NameParam NameParam NameParam NameParam defaults body Expr Str Assign NameStore Str Assign NameStore Num Assign NameStore Call NameLoad NameLoad For NameStore Call NameLoad NameLoad NameLoad body Assign NameStore SubscriptLoad NameLoad Index NameLoad If CompareEq NameLoad BinOpSub NameLoad Num body Assign NameStore Call AttributeLoad Str attr SubscriptLoad NameLoad Slice Num NameLoad orelse Assign NameStore Call AttributeLoad Str attr SubscriptLoad NameLoad Slice Num BinOpAdd NameLoad Num Assign NameStore Call NameLoad NameLoad NameLoad NameLoad BinOpAdd AttributeLoad NameLoad attr Num NameLoad Assign SubscriptStore AttributeLoad NameLoad attr Index NameLoad NameLoad AugAssignAdd NameStore Num Assign NameStore NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam defaults body Expr Str Assign NameStore Num Assign NameStore ListLoad Expr Call AttributeLoad NameLoad attr NameLoad While NameLoad body Assign NameStore Call AttributeLoad NameLoad attr For NameStore Call AttributeLoad AttributeLoad NameLoad attr attr body If CompareEq NameLoad Str body Print Str AttributeLoad NameLoad attr AugAssignAdd NameStore Num Continue Assign NameStore SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Expr Call AttributeLoad NameLoad attr NameLoad Print Str NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam NameParam defaults body Expr Str Global identifier Global identifier Delete SubscriptDel NameLoad Slice Expr Call AttributeLoad NameLoad attr TupleLoad NameLoad Num ListLoad Assign NameStore Call NameLoad NameLoad While CompareGt Call NameLoad NameLoad Num body Assign NameStore ListLoad Assign TupleStore NameStore NameStore NameStore Call AttributeLoad NameLoad attr Assign NameStore SubscriptLoad NameLoad Index NameLoad Assign NameStore Call AttributeLoad NameLoad attr Assign NameStore Call AttributeLoad NameLoad attr If BoolOpOr CompareEq NameLoad Str CompareEq NameLoad Str body Assign NameStore BinOpAdd BinOpSub NameLoad NameLoad Num orelse Assign NameStore Num If BoolOpAnd CompareNotEq NameLoad Str BoolOpOr Call AttributeLoad AttributeLoad NameLoad attr attr Str Call AttributeLoad AttributeLoad NameLoad attr attr Str body Assign NameStore SubscriptLoad NameLoad Slice Expr Call AttributeLoad NameLoad attr NameLoad For NameStore ListLoad Str Str body If UnaryOpNot Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad body Continue Expr Call AttributeLoad NameLoad attr SubscriptLoad AttributeLoad NameLoad attr Index NameLoad BinOpAdd NameLoad Num NameLoad NameLoad If Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad body Assign NameStore SubscriptLoad NameLoad Slice If CompareGt NameLoad Num body Expr Call AttributeLoad NameLoad attr BinOpSub NameLoad Num Expr Call AttributeLoad NameLoad attr SubscriptLoad AttributeLoad NameLoad attr Index NameLoad BinOpAdd NameLoad Num NameLoad NameLoad If BoolOpAnd CompareGt NameLoad Num CompareLt NameLoad NameLoad body Assign NameStore BinOpAdd NameLoad Num If CompareLt NameLoad NameLoad body Expr Call AttributeLoad NameLoad attr NameLoad NameLoad NameLoad SubscriptLoad NameLoad Slice Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam NameParam NameParam NameParam defaults body Global identifier Global identifier If CompareLt NameLoad NameLoad body Expr Call AttributeLoad NameLoad attr TupleLoad NameLoad NameLoad NameLoad orelse If Call AttributeLoad NameLoad attr body Expr Call AttributeLoad NameLoad attr TupleLoad AttributeLoad NameLoad attr NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body If CompareEq AttributeLoad NameLoad attr Str body Return NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body If AttributeLoad NameLoad attr body Return NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body If Call AttributeLoad AttributeLoad NameLoad attr attr Str body Return NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Return AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Return AttributeLoad NameLoad attr decorator_list decorator_list
N/A N/A __author__ bsa33 N/A __date__ $Nov 12, 2009 3:20:39 PM$ N/A MAX_PHR_LEN 5 N/A pattern N/A dfsStack N/A N/A matchLst N/A AbstractSuffixTree N/A object N/A N/A Implements the base class for Suffix tree N/A __slots__ N/A __text _root _trie_size __init__ N/A N/A self text N/A N/A N/A N/A N/A len text N/A N/A text endswith $$$ N/A N/A N/A self __text text N/A N/A N/A self __text N/A text  $$$ N/A N/A self __root None N/A N/A self trie_size -1 N/A N/A SimpleSuffixTree N/A AbstractSuffixTree N/A N/A Extends the AbstractSuffixTree N/A __slots__ N/A __text __root __trie_size __path_cnt __init__ N/A N/A self text total_terms N/A 5 N/A N/A MAX_PHR_LEN N/A N/A self __text text N/A MAX_PHR_LEN total_terms N/A N/A self __path_cnt 0 N/A N/A self __trie_size 0 N/A N/A self __root N/A SuffixTreeNode N/A N/A N/A self __constructTree N/A addText N/A N/A self text N/A N/A N/A N/A self __text text N/A N/A N/A self __constructTree N/A __constructTree N/A N/A self N/A N/A N/A wordsLst N/A N/A N/A self __text split N/A N/A N/A wordsLst append $$$ N/A nodes_added N/A N/A SuffixTreeNode addSuffix N/A self __root N/A self __root wordsLst N/A self __path_cnt N/A N/A nodes_added 0 N/A N/A N/A self __trie_size nodes_added N/A N/A self __path_cnt 1 N/A None N/A printFullTree N/A N/A self N/A N/A N/A N/A N/A SuffixTreeNode printTree N/A self __root N/A self __root N/A None N/A matchPattern N/A N/A self in_pattern N/A N/A N/A Returns all the suffix strings that match the given pattern N/A pattern N/A matchLst N/A N/A matchLst N/A N/A pattern in_pattern N/A wordsLst N/A N/A pattern split N/A N/A N/A len wordsLst 0 N/A N/A Empty suffix- no valid suffix tree found for the input
 N/A N/A N/A sys exit 1 N/A N/A N/A wordsLst append $$$ N/A N/A N/A SuffixTreeNode dfSearch N/A self __root N/A self __root wordsLst N/A matchLst N/A N/A SuffixTreeNode N/A object N/A N/A Implements the Node object for SuffixTree N/A __slots__ N/A __parent __label label_path __node_depth __branch_indx __childIndxDict N/A dfsStack N/A __init__ N/A N/A self parent str_label path node_depth branch_indx N/A NULL 0 -1 N/A N/A N/A self __parent parent N/A N/A self __label str_label N/A N/A self label_path path N/A N/A self __node_depth node_depth N/A N/A self __branch_indx branch_indx N/A N/A self __childIndxDict N/A N/A addSuffix N/A N/A self root_node wordsLst path_cnt N/A N/A N/A Add the given suffix in the tree: uses __search() and __insert() N/A wLst N/A wordsLst N/A N/A N/A ptr ins_at_node N/A N/A self __search root_node wLst N/A N/A N/A self __insert ins_at_node ptr wLst path_cnt N/A __search N/A N/A self curr_node wLst N/A N/A N/A Search the tree and identify the position for inserting the suffix N/A N/A N/A len wLst 1 N/A N/A Empty suffix- no valid suffix tree found for the input N/A N/A N/A sys exit 1 N/A ptr 0 N/A True N/A N/A new_label N/A wLst N/A ptr N/A N/A N/A N/A curr_node __childIndxDict has_key new_label N/A N/A child_node N/A N/A curr_node __childIndxDict N/A new_label N/A ptr 1 N/A curr_node child_node N/A N/A N/A len wLst 0 N/A N/A N/A N/A N/A N/A ptr curr_node N/A __insert N/A N/A self ins_at_node ptr wLst path_cnt N/A N/A N/A Inserts a node at the specified position in the tree, returns # of new paths created N/A path N/A tot_nodes_added 0 N/A patt_len N/A len wLst N/A pos N/A range ptr patt_len N/A N/A str_label N/A wLst N/A pos N/A N/A pos N/A patt_len 1 N/A N/A path N/A N/A join N/A wLst N/A 0 pos N/A N/A path N/A N/A join N/A wLst N/A 0 N/A pos 1 N/A child_node N/A SuffixTreeNode ins_at_node str_label path N/A N/A ins_at_node __node_depth 1 path_cnt N/A N/A N/A ins_at_node __childIndxDict N/A str_label child_node N/A tot_nodes_added 1 N/A ins_at_node child_node N/A tot_nodes_added N/A printTree N/A N/A self root_node N/A N/A N/A Use DFS algorithm to print the tree N/A tot_nodes 0 N/A nodesVisited N/A N/A N/A N/A nodesVisited append root_node N/A nodesVisited N/A N/A curr_node N/A N/A nodesVisited pop N/A child_label N/A N/A N/A curr_node __childIndxDict iterkeys N/A N/A N/A child_label $$$ N/A N/A Path :  N/A child_label label_path N/A tot_nodes 1 N/A N/A child_node N/A N/A curr_node __childIndxDict N/A child_label N/A N/A N/A nodesVisited append child_node N/A Total nodes in Trie : tot_nodes N/A None N/A dfSearch N/A N/A self root_node wLst N/A N/A N/A Implements the Depth-First Search (w/ special routines) for matching patterns N/A MAX_PHR_LEN N/A dfsStack N/A N/A dfsStack N/A N/A N/A N/A dfsStack append N/A root_node 0 N/A N/A patt_len N/A len wLst N/A N/A N/A len dfsStack 0 N/A N/A sIndxLst N/A N/A N/A curr_node search_indx sIndxLst N/A N/A dfsStack pop N/A search_label N/A wLst N/A search_indx N/A curr_label N/A N/A curr_node getStrLabel N/A curr_node_depth N/A N/A curr_node getNodeDepth N/A N/A N/A curr_label X__1 N/A curr_label X__2 N/A N/A prev_match N/A N/A search_indx curr_node_depth 1 N/A N/A prev_match 0 N/A N/A N/A search_label $$$ N/A N/A N/A N/A curr_node __childIndxDict has_key X__1 N/A N/A N/A curr_node __childIndxDict has_key X__2 N/A N/A spanIndxLst N/A sIndxLst N/A N/A N/A N/A spanIndxLst append search_indx N/A child N/A X__1 X__2 N/A N/A N/A N/A N/A N/A curr_node __childIndxDict has_key child N/A N/A N/A N/A N/A self __processNewNode N/A N/A curr_node __childIndxDict N/A child N/A search_indx 1 patt_len spanIndxLst N/A N/A N/A N/A curr_node __childIndxDict has_key search_label N/A N/A spanIndxLst N/A sIndxLst N/A N/A N/A prev_match 0 N/A N/A N/A N/A spanIndxLst append N/A search_indx 1 N/A N/A N/A self __processNewNode N/A N/A curr_node __childIndxDict N/A search_label N/A search_indx 1 patt_len spanIndxLst N/A N/A N/A prev_match 0 N/A prev_match MAX_PHR_LEN N/A N/A new_search_indx N/A search_indx 1 N/A N/A new_search_indx patt_len N/A N/A N/A N/A self __processNewNode curr_node new_search_indx patt_len N/A sIndxLst N/A N/A None N/A __processNewNode N/A N/A self new_node new_search_indx patt_len spanIndxLst N/A N/A N/A dfsStack N/A matchLst N/A N/A new_search_indx patt_len N/A N/A N/A N/A dfsStack append N/A new_node new_search_indx spanIndxLst N/A N/A N/A N/A new_node isLeaf N/A N/A N/A N/A matchLst append N/A N/A new_node label_path spanIndxLst N/A None N/A isRoot N/A N/A self N/A N/A N/A N/A N/A self parent NULL N/A N/A True N/A False N/A isLeaf N/A N/A self N/A N/A N/A N/A self __childIndxDict N/A N/A False N/A True N/A isEndofSuffix N/A N/A self N/A N/A N/A N/A N/A N/A self __childIndxDict has_key $$$ N/A N/A True N/A False N/A getNodeDepth N/A N/A self N/A N/A N/A N/A self __node_depth N/A getStrLabel N/A N/A self N/A N/A N/A N/A self __label N/A N/A