Module ImportFrom alias Import alias ImportFrom alias Assign NameStore Str Assign NameStore ListLoad Str Str Str Str Str Str Str Str Str Str Str Str Str FunctionDef arguments args defaults body Assign NameStore Call NameLoad Assign NameStore Call NameLoad AttributeLoad NameLoad attr For NameStore NameLoad body Expr Call NameLoad NameLoad NameLoad NameLoad For TupleStore NameStore NameStore Call NameLoad AttributeLoad NameLoad attr AttributeLoad NameLoad attr body If CompareNotIn Str NameLoad body Assign SubscriptStore NameLoad Index Str Dict Assign SubscriptStore SubscriptLoad NameLoad Index Str Index NameLoad NameLoad Expr Call NameLoad NameLoad decorator_list FunctionDef arguments args NameParam NameParam NameParam defaults body Assign NameStore Call NameLoad NameLoad NameLoad If BoolOpOr NameLoad UnaryOpNot CompareIn NameLoad NameLoad body Assign SubscriptStore NameLoad Index NameLoad NameLoad decorator_list FunctionDef arguments args defaults body Assign NameStore Call NameLoad NameLoad Expr Call AttributeLoad NameLoad attr Str keyword Str keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str keyword Str keyword ListLoad Expr Call AttributeLoad NameLoad attr Str keyword Str keyword Str keyword ListLoad Expr Call AttributeLoad NameLoad attr Str keyword Str keyword Str keyword ListLoad keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str keyword Str keyword ListLoad keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str keyword NameLoad keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str keyword NameLoad keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str keyword NameLoad keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str keyword NameLoad keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str keyword NameLoad keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str keyword NameLoad keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str Expr Call AttributeLoad NameLoad attr Str keyword Str keyword Str keyword ListLoad Expr Call AttributeLoad NameLoad attr Str keyword Str keyword Str keyword ListLoad Assign NameStore Call AttributeLoad NameLoad attr If CompareEq Call NameLoad AttributeLoad NameLoad attr Num body Assign AttributeStore NameLoad attr ListLoad Str Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body If UnaryOpNot CompareEq NameLoad Str body Return Call NameLoad NameLoad orelse Return Dict decorator_list FunctionDef arguments args NameParam defaults body With Call NameLoad NameLoad NameStore body Return Call AttributeLoad NameLoad attr NameLoad decorator_list If CompareEq NameLoad Str body Expr Call NameLoad
N/A argparse ArgumentParser N/A yaml cloudbio.deploy deploy N/A DESC Creates an on-demand cloud instance, sets up applications, and transfer files to it. N/A ARG_PROPERTIES N/A files compressed_files actions runtime_properties vm_provider hostname target flavor package target_bucket galaxy_tool_version galaxy_tool_name galaxy_tool_dir main N/A N/A N/A N/A N/A args N/A parse_args N/A options N/A parse_settings N/A args settings N/A property ARG_PROPERTIES N/A N/A N/A _copy_arg_to_options options args property N/A N/A fabric_property fabric_value N/A zip N/A args fabric_properties N/A args fabric_values N/A N/A N/A fabricrc_overrides options N/A N/A N/A options N/A fabricrc_overrides N/A N/A N/A N/A options N/A fabricrc_overrides N/A fabric_property fabric_value N/A N/A deploy options N/A _copy_arg_to_options N/A N/A options args property N/A N/A N/A arg_property N/A getattr args property N/A N/A arg_property N/A N/A property options N/A N/A N/A options N/A property arg_property N/A parse_args N/A N/A N/A N/A N/A parser N/A ArgumentParser DESC N/A N/A N/A parser add_argument --settings dest settings default settings.yaml N/A N/A N/A parser add_argument --action dest actions action append default N/A N/A N/A N/A parser add_argument --runtime_property dest runtime_properties action append default N/A N/A N/A N/A parser add_argument --compressed_file dest compressed_files action append default N/A help file to transfer to new instance and decompress N/A N/A N/A parser add_argument --file dest files action append default N/A help file to transfer to new instance N/A N/A N/A parser add_argument --vm_provider dest vm_provider default None help libcloud driver to use (or vagrant) (e.g. aws, openstack) N/A N/A N/A parser add_argument --hostname dest hostname default None help Newly created nodes are created with this specified hostname. N/A N/A N/A parser add_argument --target dest target default None help Specify a CloudBioLinux target, used with action install_biolinux action N/A N/A N/A parser add_argument --flavor dest flavor default None help Specify a CloudBioLinux flavor, used with action install_biolinux action N/A N/A N/A parser add_argument --package dest package default None help Specify a CloudBioLinux package, used with action install_custom N/A N/A N/A parser add_argument --target_bucket dest target_bucket default None help Specify a target bucket for CloudMan bucket related actions. N/A N/A N/A parser add_argument --galaxy_tool_version dest galaxy_tool_version N/A N/A N/A parser add_argument --galaxy_tool_name dest galaxy_tool_name N/A N/A N/A parser add_argument --galaxy_tool_dir dest galaxy_tool_dir N/A N/A N/A parser add_argument --fabric_property dest fabric_properties action append default N/A N/A N/A N/A parser add_argument --fabric_value dest fabric_values action append default N/A N/A args N/A N/A parser parse_args N/A N/A N/A len N/A args actions 0 N/A N/A N/A args actions N/A transfer N/A args N/A parse_settings N/A N/A name N/A N/A N/A N/A N/A name __none__ N/A N/A N/A _read_yaml name N/A N/A N/A N/A _read_yaml N/A N/A yaml_file N/A N/A N/A N/A open yaml_file in_handle N/A N/A N/A N/A yaml load in_handle N/A N/A N/A __name__ __main__ N/A N/A N/A main