Module Expr Str Import alias ImportFrom alias Import alias Import alias ClassDef bases AttributeLoad NameLoad attr body FunctionDef arguments args NameParam defaults body Assign NameStore Call NameLoad Str Str Str keyword Num keyword Num keyword Str keyword ListLoad TupleLoad Str Num Assign NameStore Call AttributeLoad AttributeLoad AttributeLoad NameLoad attr attr attr NameLoad Expr Call AttributeLoad NameLoad attr NameLoad NameLoad Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr Call AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr Str decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call NameLoad Str Str Str keyword Num keyword Num keyword Str keyword ListLoad TupleLoad Str Num Assign NameStore Call AttributeLoad AttributeLoad AttributeLoad NameLoad attr attr attr NameLoad Expr Call AttributeLoad NameLoad attr NameLoad NameLoad Expr Call AttributeLoad NameLoad attr Call AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr Str decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call NameLoad Str Str Str keyword ListLoad TupleLoad Str Num Assign NameStore Call AttributeLoad AttributeLoad AttributeLoad NameLoad attr attr attr NameLoad Expr Call AttributeLoad NameLoad attr NameLoad NameLoad decorator_list decorator_list If CompareEq NameLoad Str body Expr Call AttributeLoad NameLoad attr
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Tests for bamutils cleancigar
 N/A unittest ngsutils.bam.t MockRead N/A ngsutils.bam N/A ngsutils.bam.cleancigar CleanCigarTest N/A N/A unittest TestCase N/A testCleanCigar N/A N/A self N/A N/A N/A read N/A MockRead foo AAAATTTTCCCGGG AAAABBBBBBBCCC tid 1 pos 1 cigar 10M0I4M tags N/A N/A XA 1 N/A code N/A N/A N/A N/A ngsutils bam cleancigar read_cleancigar read N/A N/A N/A self assertEqual code True N/A N/A N/A self assertEqual N/A read qname foo N/A N/A N/A self assertEqual N/A N/A N/A ngsutils bam cigar_tostr N/A read cigar 14M N/A testNoClean N/A N/A self N/A N/A N/A read N/A MockRead foo AAAATTTTCCCGGG AAAABBBBBBBCCC tid 1 pos 1 cigar 14M tags N/A N/A XA 1 N/A code N/A N/A N/A N/A ngsutils bam cleancigar read_cleancigar read N/A N/A N/A self assertEqual code False N/A N/A N/A self assertEqual N/A N/A N/A ngsutils bam cigar_tostr N/A read cigar 14M N/A testUnmapped N/A N/A self N/A N/A N/A read N/A MockRead foo AAAATTTTCCCGGG AAAABBBBBBBCCC tags N/A N/A XA 1 N/A code N/A N/A N/A N/A ngsutils bam cleancigar read_cleancigar read N/A N/A N/A self assertEqual code False N/A N/A N/A N/A __name__ __main__ N/A N/A N/A N/A unittest main