Module Expr Str Import alias Import alias FunctionDef arguments args NameParam defaults body If CompareEq NameLoad Str body Assign NameStore AttributeLoad NameLoad attr orelse Assign NameStore Call NameLoad NameLoad Expr Call NameLoad NameLoad If CompareNotEq NameLoad Str body Expr Call AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam NameParam defaults AttributeLoad NameLoad attr body For NameStore NameLoad body Assign NameStore Call AttributeLoad NameLoad attr If BoolOpOr UnaryOpNot NameLoad CompareEq SubscriptLoad NameLoad Index Num Str body Continue Assign NameStore Call AttributeLoad NameLoad attr Str Assign NameStore SubscriptLoad NameLoad Index Num Assign NameStore BinOpSub Call NameLoad SubscriptLoad NameLoad Index Num Num Expr Call AttributeLoad NameLoad attr BinOpMod Str TupleLoad NameLoad NameLoad BinOpAdd NameLoad Num decorator_list FunctionDef arguments args defaults body Print NameLoad Print Str Expr Call AttributeLoad NameLoad attr Num decorator_list If CompareEq NameLoad Str body Assign NameStore NameLoad For NameStore SubscriptLoad AttributeLoad NameLoad attr Slice Num body If BoolOpAnd UnaryOpNot NameLoad BoolOpOr Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad CompareEq NameLoad Str body Assign NameStore NameLoad orelse If CompareEq NameLoad Str body Expr Call NameLoad orelse Expr Call NameLoad If UnaryOpNot NameLoad body Expr Call NameLoad Expr Call NameLoad NameLoad
N/A N/A 
Converts a file in basecall format to BED3 format
 N/A sys N/A os bed_frombasecall N/A N/A fname N/A N/A N/A N/A fname - N/A N/A f N/A sys stdin N/A N/A f N/A open fname N/A N/A _bed_frombasecall f N/A N/A fname - N/A N/A N/A N/A f close N/A _bed_frombasecall N/A N/A fileobj out N/A N/A sys stdout N/A N/A line fileobj N/A N/A line N/A N/A line strip N/A N/A N/A line N/A N/A line N/A 0 # N/A N/A N/A cols N/A N/A line split N/A chrom N/A cols N/A 0 N/A pos N/A N/A int N/A cols N/A 1 1 N/A N/A N/A out write N/A %s	%s	%s
 N/A chrom pos N/A pos 1 N/A usage N/A N/A N/A N/A N/A __doc__ N/A Usage: bedutils frombasecall basecall.txt (- for stdin) N/A N/A N/A sys exit 1 N/A N/A N/A __name__ __main__ N/A N/A fname None N/A arg N/A N/A sys argv N/A 1 N/A N/A N/A N/A fname N/A N/A N/A N/A os path exists arg N/A arg - N/A N/A fname arg N/A N/A N/A arg -h N/A N/A N/A usage N/A N/A N/A usage N/A N/A fname N/A N/A N/A usage N/A N/A bed_frombasecall fname