Module Expr Str Import alias Import alias ImportFrom alias Import alias FunctionDef arguments args NameParam NameParam NameParam defaults AttributeLoad NameLoad attr NameLoad body If AttributeLoad NameLoad attr body Expr Call AttributeLoad AttributeLoad NameLoad attr attr Str Expr Call AttributeLoad NameLoad attr Num For NameStore Call AttributeLoad NameLoad attr keyword NameLoad body Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr Assign NameStore SubscriptLoad AttributeLoad NameLoad attr Slice Num Expr Call AttributeLoad Call AttributeLoad NameLoad attr keyword NameLoad keyword NameLoad attr NameLoad decorator_list FunctionDef arguments args defaults body Print NameLoad Print Str Expr Call AttributeLoad NameLoad attr Num decorator_list If CompareEq NameLoad Str body Assign NameStore NameLoad For NameStore SubscriptLoad AttributeLoad NameLoad attr Slice Num body If CompareEq NameLoad Str body Expr Call NameLoad If BoolOpAnd UnaryOpNot NameLoad Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad body Assign NameStore NameLoad If UnaryOpNot NameLoad body Expr Call NameLoad Assign NameStore Call NameLoad NameLoad Expr Call NameLoad NameLoad Expr Call AttributeLoad NameLoad attr
N/A N/A 
Reverse compliments each read in a FASTQ file.
(base-space only)
 N/A os N/A sys ngsutils.fastq FASTQ N/A ngsutils.support fastq_revcomp N/A N/A fastq out quiet N/A N/A sys stdout False N/A N/A N/A fastq is_colorspace N/A N/A N/A N/A N/A sys stderr write Reverse-complimenting only works on base-space files N/A N/A N/A sys exit 1 N/A read N/A N/A fastq fetch quiet quiet N/A N/A seq N/A N/A N/A ngsutils support revcomp N/A read seq N/A qual N/A N/A read qual N/A -1 N/A N/A N/A N/A N/A read clone seq seq qual qual write out N/A usage N/A N/A N/A N/A N/A __doc__ N/A Usage: fastqutils revcomp filename.fastq{.gz} N/A N/A N/A sys exit 1 N/A N/A N/A __name__ __main__ N/A N/A fname None N/A arg N/A N/A sys argv N/A 1 N/A N/A N/A arg -h N/A N/A N/A usage N/A N/A N/A fname N/A N/A N/A os path exists arg N/A N/A fname arg N/A N/A fname N/A N/A N/A usage N/A fq N/A FASTQ fname N/A N/A fastq_revcomp fq N/A N/A N/A fq close