Module ImportFrom alias ImportFrom alias alias ImportFrom alias ImportFrom alias ClassDef bases NameLoad body Assign NameStore Str Assign NameStore BinOpAdd AttributeLoad NameLoad attr TupleLoad Call NameLoad Str keyword Str keyword Str keyword Str Call NameLoad Str keyword Str keyword Str keyword Str Call NameLoad Str keyword Str keyword Str keyword Str Call NameLoad Str keyword Str keyword Str keyword Str keyword Str Call NameLoad Str keyword Str keyword Str keyword NameLoad keyword Str Call NameLoad Str keyword Str keyword NameLoad keyword Str Expr Str FunctionDef arguments args NameParam defaults vararg kwarg body Assign SubscriptStore NameLoad Index Str Str Assign SubscriptStore NameLoad Index Str Str Assign SubscriptStore NameLoad Index Str Str Assign SubscriptStore NameLoad Index Str Str Assign SubscriptStore NameLoad Index Str Str Assign SubscriptStore NameLoad Index Str Str Assign SubscriptStore NameLoad Index Str NameLoad Assign NameStore ListLoad Str Str Str For NameStore NameLoad body If UnaryOpNot SubscriptLoad NameLoad Index NameLoad body Raise Call NameLoad BinOpMod Str NameLoad Assign NameStore Call NameLoad Assign AttributeStore NameLoad attr ListComp Call NameLoad Call AttributeLoad NameLoad attr comprehension NameStore Call AttributeLoad SubscriptLoad NameLoad Index Str attr Str Assign AttributeStore NameLoad attr Str Assign AttributeStore NameLoad attr SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr Call NameLoad SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr Call NameLoad SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr Call NameLoad SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr Call NameLoad SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr Call NameLoad SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr SubscriptLoad NameLoad Index Str Assign NameStore Call AttributeLoad NameLoad attr SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr SubscriptLoad NameLoad Index Str Expr Call AttributeLoad NameLoad attr Expr Call NameLoad AttributeLoad NameLoad attr SubscriptLoad NameLoad Index Str keyword SubscriptLoad NameLoad Index Str keyword SubscriptLoad NameLoad Index Str keyword SubscriptLoad NameLoad Index Str decorator_list decorator_list
N/A optparse make_option django.core.management.base BaseCommand CommandError data_set_manager.single_file_column_parser SingleFileColumnParser data_set_manager.tasks create_dataset Command N/A BaseCommand N/A N/A help Takes a tab-delimited file in Refinery default format as input,parses, and %s inputs it into the database N/A option_list N/A N/A BaseCommand option_list N/A N/A make_option --username action store type string help (Required) username of the owner of this data set N/A make_option --title action store type string help (Required) name of this data set N/A make_option --file_name action store type string help (Required) absolute path to the file being parsed N/A make_option --base_path action store type string default help base path of your data file paths if using relative locations N/A make_option --slug action store type string default None help shortcut name for dataset URL; can only contain alpha-numeric characters and '_' N/A make_option --is_public action store_true default False help flag for whether this data set will be visible to the public N/A 
    Name: handle
    Description:
        main program; calls the parsing and insertion functions
     handle N/A N/A self N/A args options N/A N/A N/A options N/A source_column_index 0 N/A N/A options N/A data_file_column 1 N/A N/A options N/A auxiliary_file_column 2 N/A N/A options N/A species_column 3 N/A N/A options N/A genome_build_column 4 N/A N/A options N/A annotation_column 5 N/A N/A options N/A data_file_permanent True N/A required N/A username title file_name N/A arg required N/A N/A N/A N/A options N/A arg N/A N/A N/A CommandError N/A %s was not provided. arg N/A parser N/A SingleFileColumnParser N/A N/A parser source_column_index N/A N/A int N/A N/A x strip N/A x N/A N/A N/A options N/A source_column_index split , N/A N/A parser column_index_separator / N/A N/A parser file_base_path N/A options N/A base_path N/A N/A parser file_column_index N/A int N/A options N/A data_file_column N/A N/A parser auxiliary_file_column_index N/A int N/A options N/A auxiliary_file_column N/A N/A parser species_column_index N/A int N/A options N/A species_column N/A N/A parser genome_build_column_index N/A int N/A options N/A genome_build_column N/A N/A parser annotation_column_index N/A int N/A options N/A annotation_column N/A N/A parser file_permanent N/A options N/A data_file_permanent N/A investigation N/A N/A parser run N/A options N/A file_name N/A N/A investigation title N/A options N/A title N/A N/A N/A investigation save N/A N/A create_dataset N/A investigation uuid N/A options N/A username dataset_title N/A options N/A title slug N/A options N/A slug public N/A options N/A is_public N/A N/A