0,000,000 ± 00,0000.00 ± 0.0000,000,000 ± 00,0000.00 ± 0.0000,000,000 ± 00,0000.00 ± 0.000PASS0,000,000 ± 00,0000.00 ± 0.0000,000,000 ± 00,0000.00 ± 0.0000,000,000 ± 00,0000.00 ± 0.000Family 0ALL0,000,0000.000,000,0000.000,000,0000.00PASS0,000,0000.000,000,0000.000,000,0000.00Family 0ALL0,000,0000.000,000,0000.000,000,0000.00PASS0,000,0000.000,000,0000.000,000,0000.00Comparison between the pipelines have been done for unfiltered sets (CASAVA ALL, GATK ALL), and for quality filtered sets (CASAVA PASS, GATK PASS). 