Datasets:

mims-harvard

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ProCyon-Instruct

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Artificial Intelligence for Medicine and Science @ Harvard 7

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 5 new columns ({'seq_type_1', 'seq_type_2', 'seq_id_1', 'seq_id_2', 'source'}) and 4 missing columns ({'text_id', 'seq_id', 'text_type', 'seq_type'}).

This happened while the csv dataset builder was generating data using

hf://datasets/mims-harvard/ProCyon-Instruct/integrated_data/v1/peptide_peptide/peptide_peptide_relations_indexed.unified.csv (at revision a0f4304ac6b54783c68c541c70db8c2526bd76bb)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              seq_id_1: int64
              seq_id_2: int64
              source: string
              relation: int64
              seq_type_1: string
              seq_type_2: string
              split: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1063
              to
              {'text_id': Value(dtype='string', id=None), 'text_type': Value(dtype='string', id=None), 'seq_id': Value(dtype='string', id=None), 'seq_type': Value(dtype='string', id=None), 'relation': Value(dtype='string', id=None), 'split': Value(dtype='string', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1412, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 988, in stream_convert_to_parquet
                  builder._prepare_split(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 5 new columns ({'seq_type_1', 'seq_type_2', 'seq_id_1', 'seq_id_2', 'source'}) and 4 missing columns ({'text_id', 'seq_id', 'text_type', 'seq_type'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/mims-harvard/ProCyon-Instruct/integrated_data/v1/peptide_peptide/peptide_peptide_relations_indexed.unified.csv (at revision a0f4304ac6b54783c68c541c70db8c2526bd76bb)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)