id
int32 0
901k
| id1
int32 74
23.7M
| id2
int32 74
23.7M
| func1
stringlengths 234
68.5k
| func2
stringlengths 234
68.5k
| label
bool 2
classes |
|---|---|---|---|---|---|
0 | 13,988,825 | 8,660,836 | private void setNodekeyInJsonResponse(String service) throws Exception {
String filename = this.baseDirectory + service + ".json";
Scanner s = new Scanner(new File(filename));
PrintWriter fw = new PrintWriter(new File(filename + ".new"));
while (s.hasNextLine()) {
fw.println(s.nextLine().replaceAll("NODEKEY", this.key));
}
s.close();
fw.close();
(new File(filename + ".new")).renameTo(new File(filename));
}
| public void transform(String style, String spec, OutputStream out) throws IOException {
URL url = new URL(rootURL, spec);
InputStream in = new PatchXMLSymbolsStream(new StripDoctypeStream(url.openStream()));
transform(style, in, out);
in.close();
}
| false |
1 | 80,378 | 18,548,122 | public static void test(String args[]) {
int trace;
int bytes_read = 0;
int last_contentLenght = 0;
try {
BufferedReader reader;
URL url;
url = new URL(args[0]);
URLConnection istream = url.openConnection();
last_contentLenght = istream.getContentLength();
reader = new BufferedReader(new InputStreamReader(istream.getInputStream()));
System.out.println(url.toString());
String line;
trace = t2pNewTrace();
while ((line = reader.readLine()) != null) {
bytes_read = bytes_read + line.length() + 1;
t2pProcessLine(trace, line);
}
t2pHandleEventPairs(trace);
t2pSort(trace, 0);
t2pExportTrace(trace, new String("pngtest2.png"), 1000, 700, (float) 0, (float) 33);
t2pExportTrace(trace, new String("pngtest3.png"), 1000, 700, (float) 2.3, (float) 2.44);
System.out.println("Press any key to contiune read from stream !!!");
System.out.println(t2pGetProcessName(trace, 0));
System.in.read();
istream = url.openConnection();
if (last_contentLenght != istream.getContentLength()) {
istream = url.openConnection();
istream.setRequestProperty("Range", "bytes=" + Integer.toString(bytes_read) + "-");
System.out.println(Integer.toString(istream.getContentLength()));
reader = new BufferedReader(new InputStreamReader(istream.getInputStream()));
while ((line = reader.readLine()) != null) {
System.out.println(line);
t2pProcessLine(trace, line);
}
} else System.out.println("File not changed !");
t2pDeleteTrace(trace);
} catch (MalformedURLException e) {
System.out.println("MalformedURLException !!!");
} catch (IOException e) {
System.out.println("File not found " + args[0]);
}
;
}
| private static String loadUrlToString(String a_url) throws IOException {
URL l_url1 = new URL(a_url);
BufferedReader br = new BufferedReader(new InputStreamReader(l_url1.openStream()));
String l_content = "";
String l_ligne = null;
l_content = br.readLine();
while ((l_ligne = br.readLine()) != null) {
l_content += AA.SL + l_ligne;
}
return l_content;
}
| true |
2 | 21,354,223 | 7,421,563 | public String kodetu(String testusoila) {
MessageDigest md = null;
try {
md = MessageDigest.getInstance("SHA");
md.update(testusoila.getBytes("UTF-8"));
} catch (NoSuchAlgorithmException e) {
new MezuLeiho("Ez da zifraketa algoritmoa aurkitu", "Ados", "Zifraketa Arazoa", JOptionPane.ERROR_MESSAGE);
e.printStackTrace();
} catch (UnsupportedEncodingException e) {
new MezuLeiho("Errorea kodetzerakoan", "Ados", "Kodeketa Errorea", JOptionPane.ERROR_MESSAGE);
e.printStackTrace();
}
byte raw[] = md.digest();
String hash = (new BASE64Encoder()).encode(raw);
return hash;
}
| private StringBuffer encoder(String arg) {
if (arg == null) {
arg = "";
}
MessageDigest md5 = null;
try {
md5 = MessageDigest.getInstance("MD5");
md5.update(arg.getBytes(SysConstant.charset));
} catch (Exception e) {
e.printStackTrace();
}
return toHex(md5.digest());
}
| true |
3 | 15,826,299 | 19,728,871 | public static void printResponseHeaders(String address) {
logger.info("Address: " + address);
try {
URL url = new URL(address);
URLConnection conn = url.openConnection();
for (int i = 0; ; i++) {
String headerName = conn.getHeaderFieldKey(i);
String headerValue = conn.getHeaderField(i);
if (headerName == null && headerValue == null) {
break;
}
if (headerName == null) {
logger.info(headerValue);
continue;
}
logger.info(headerName + " " + headerValue);
}
} catch (Exception e) {
logger.error("Exception Message: " + e.getMessage());
}
}
| public static String getEncodedPassword(String buff) {
if (buff == null) return null;
String t = new String();
try {
MessageDigest md = MessageDigest.getInstance("MD5");
md.update(buff.getBytes());
byte[] r = md.digest();
for (int i = 0; i < r.length; i++) {
t += toHexString(r[i]);
}
} catch (Exception e) {
e.printStackTrace();
}
return t;
}
| false |
4 | 9,938,081 | 11,517,213 | public void load(String fileName) {
BufferedReader bufReader;
loaded = false;
vector.removeAllElements();
try {
if (fileName.startsWith("http:")) {
URL url = new URL(fileName);
bufReader = new BufferedReader(new InputStreamReader(url.openStream()));
} else bufReader = new BufferedReader(new FileReader(fileName));
String inputLine;
while ((inputLine = bufReader.readLine()) != null) {
if (listener != null) listener.handleLine(inputLine); else vector.add(inputLine);
}
bufReader.close();
loaded = true;
} catch (IOException e) {
errorMsg = e.getMessage();
}
}
| private static void copyFile(File sourceFile, File destFile) {
try {
if (!destFile.exists()) {
destFile.createNewFile();
}
FileChannel source = null;
FileChannel destination = null;
try {
source = new FileInputStream(sourceFile).getChannel();
destination = new FileOutputStream(destFile).getChannel();
destination.transferFrom(source, 0, source.size());
} finally {
if (source != null) {
source.close();
}
if (destination != null) {
destination.close();
}
}
} catch (Exception e) {
throw new RuntimeException(e);
}
}
| false |
5 | 18,220,543 | 17,366,812 | private MapProperties readProperties(URL url) {
@SuppressWarnings("unchecked") MapProperties properties = new MapProperties(new LinkedHashMap());
InputStream is = null;
try {
is = url.openStream();
properties.load(is);
} catch (IOException ex) {
throw new RuntimeException(ex);
} finally {
StreamUtils.close(is);
}
return properties;
}
| public String tranportRemoteUnitToLocalTempFile(String urlStr) throws UnitTransportException {
InputStream input = null;
BufferedOutputStream bos = null;
File tempUnit = null;
try {
URL url = null;
int total = 0;
try {
url = new URL(urlStr);
input = url.openStream();
URLConnection urlConnection;
urlConnection = url.openConnection();
total = urlConnection.getContentLength();
} catch (IOException e) {
throw new UnitTransportException(String.format("Can't get remote file [%s].", urlStr), e);
}
String unitName = urlStr.substring(urlStr.lastIndexOf('/') + 1);
tempUnit = null;
try {
if (StringUtils.isNotEmpty(unitName)) tempUnit = new File(CommonUtil.getTempDir(), unitName); else tempUnit = File.createTempFile(CommonUtil.getTempDir(), "tempUnit");
File parent = tempUnit.getParentFile();
FileUtils.forceMkdir(parent);
if (!tempUnit.exists()) FileUtils.touch(tempUnit);
bos = new BufferedOutputStream(new FileOutputStream(tempUnit));
} catch (FileNotFoundException e) {
throw new UnitTransportException(String.format("Can't find temp file [%s].", tempUnit.getAbsolutePath()), e);
} catch (IOException e) {
throw new UnitTransportException(String.format("Can't create temp file [%s].", tempUnit.getAbsolutePath()), e);
} catch (DeployToolException e) {
throw new UnitTransportException(String.format("Error when create temp file [%s].", tempUnit), e);
}
logger.info(String.format("Use [%s] for http unit [%s].", tempUnit.getAbsoluteFile(), urlStr));
int size = -1;
try {
size = IOUtils.copy(input, bos);
bos.flush();
} catch (IOException e) {
logger.info(String.format("Error when download [%s] to [%s].", urlStr, tempUnit));
}
if (size != total) throw new UnitTransportException(String.format("The file size is not right when download http unit [%s]", urlStr));
} finally {
if (input != null) IOUtils.closeQuietly(input);
if (bos != null) IOUtils.closeQuietly(bos);
}
logger.info(String.format("Download unit to [%s].", tempUnit.getAbsolutePath()));
return tempUnit.getAbsolutePath();
}
| false |
6 | 22,328,849 | 17,334,846 | protected void doRestoreOrganize() throws Exception {
Connection con = null;
PreparedStatement ps = null;
ResultSet result = null;
String strDelQuery = "DELETE FROM " + Common.ORGANIZE_TABLE;
String strSelQuery = "SELECT organize_id,organize_type_id,organize_name,organize_manager," + "organize_describe,work_type,show_order,position_x,position_y " + "FROM " + Common.ORGANIZE_B_TABLE + " " + "WHERE version_no = ?";
String strInsQuery = "INSERT INTO " + Common.ORGANIZE_TABLE + " " + "(organize_id,organize_type_id,organize_name,organize_manager," + "organize_describe,work_type,show_order,position_x,position_y) " + "VALUES (?,?,?,?,?,?,?,?,?)";
DBOperation dbo = factory.createDBOperation(POOL_NAME);
try {
try {
con = dbo.getConnection();
con.setAutoCommit(false);
ps = con.prepareStatement(strDelQuery);
ps.executeUpdate();
ps = con.prepareStatement(strSelQuery);
ps.setInt(1, this.versionNO);
result = ps.executeQuery();
ps = con.prepareStatement(strInsQuery);
while (result.next()) {
ps.setString(1, result.getString("organize_id"));
ps.setString(2, result.getString("organize_type_id"));
ps.setString(3, result.getString("organize_name"));
ps.setString(4, result.getString("organize_manager"));
ps.setString(5, result.getString("organize_describe"));
ps.setString(6, result.getString("work_type"));
ps.setInt(7, result.getInt("show_order"));
ps.setInt(8, result.getInt("position_x"));
ps.setInt(9, result.getInt("position_y"));
int resultCount = ps.executeUpdate();
if (resultCount != 1) {
con.rollback();
throw new CesSystemException("Organize_backup.doRestoreOrganize(): ERROR Inserting data " + "in T_SYS_ORGANIZE INSERT !! resultCount = " + resultCount);
}
}
con.commit();
} catch (SQLException se) {
con.rollback();
throw new CesSystemException("Organize_backup.doRestoreOrganize(): SQLException: " + se);
} finally {
con.setAutoCommit(true);
close(dbo, ps, result);
}
} catch (SQLException se) {
throw new CesSystemException("Organize_backup.doRestoreOrganize(): SQLException while committing or rollback");
}
}
| static String encodeEmailAsUserId(String email) {
try {
MessageDigest md5 = MessageDigest.getInstance("MD5");
md5.update(email.toLowerCase().getBytes());
StringBuilder builder = new StringBuilder();
builder.append("1");
for (byte b : md5.digest()) {
builder.append(String.format("%02d", new Object[] { Integer.valueOf(b & 0xFF) }));
}
return builder.toString().substring(0, 20);
} catch (NoSuchAlgorithmException ex) {
}
return "";
}
| false |
7 | 19,130,322 | 15,710,690 | private String sha1(String s) {
String encrypt = s;
try {
MessageDigest sha = MessageDigest.getInstance("SHA-1");
sha.update(s.getBytes());
byte[] digest = sha.digest();
final StringBuffer buffer = new StringBuffer();
for (int i = 0; i < digest.length; ++i) {
final byte b = digest[i];
final int value = (b & 0x7F) + (b < 0 ? 128 : 0);
buffer.append(value < 16 ? "0" : "");
buffer.append(Integer.toHexString(value));
}
encrypt = buffer.toString();
} catch (NoSuchAlgorithmException e) {
e.printStackTrace();
}
return encrypt;
}
| @SuppressWarnings("unused")
private String getMD5(String value) {
MessageDigest md5;
try {
md5 = MessageDigest.getInstance("MD5");
} catch (NoSuchAlgorithmException e) {
return "";
}
md5.reset();
md5.update(value.getBytes());
byte[] messageDigest = md5.digest();
StringBuffer hexString = new StringBuffer();
for (int i = 0; i < messageDigest.length; i++) {
hexString.append(Integer.toHexString(0xFF & messageDigest[i]));
}
String hashedPassword = hexString.toString();
return hashedPassword;
}
| true |
8 | 1,111,832 | 789,472 | private void storeFieldMap(WorkingContent c, Connection conn) throws SQLException {
SQLDialect dialect = getDatabase().getSQLDialect();
if (TRANSACTIONS_ENABLED) {
conn.setAutoCommit(false);
}
try {
Object thisKey = c.getPrimaryKey();
deleteFieldContent(thisKey, conn);
PreparedStatement ps = null;
StructureItem nextItem;
Map fieldMap = c.getFieldMap();
String type;
Object value, siKey;
for (Iterator i = c.getStructure().getStructureItems().iterator(); i.hasNext(); ) {
nextItem = (StructureItem) i.next();
type = nextItem.getDataType().toUpperCase();
siKey = nextItem.getPrimaryKey();
value = fieldMap.get(nextItem.getName());
try {
if (type.equals(StructureItem.DATE)) {
ps = conn.prepareStatement(sqlConstants.get("INSERT_DATE_FIELD"));
ps.setObject(1, thisKey);
ps.setObject(2, siKey);
dialect.setDate(ps, 3, (Date) value);
ps.executeUpdate();
} else if (type.equals(StructureItem.INT) || type.equals(StructureItem.FLOAT) || type.equals(StructureItem.VARCHAR)) {
ps = conn.prepareStatement(sqlConstants.get("INSERT_" + type + "_FIELD"));
ps.setObject(1, thisKey);
ps.setObject(2, siKey);
if (value != null) {
ps.setObject(3, value);
} else {
int sqlType = Types.INTEGER;
if (type.equals(StructureItem.FLOAT)) {
sqlType = Types.FLOAT;
} else if (type.equals(StructureItem.VARCHAR)) {
sqlType = Types.VARCHAR;
}
ps.setNull(3, sqlType);
}
ps.executeUpdate();
} else if (type.equals(StructureItem.TEXT)) {
setTextField(c, siKey, (String) value, conn);
}
if (ps != null) {
ps.close();
ps = null;
}
} finally {
if (ps != null) ps.close();
}
}
if (TRANSACTIONS_ENABLED) {
conn.commit();
}
} catch (SQLException e) {
if (TRANSACTIONS_ENABLED) {
conn.rollback();
}
throw e;
} finally {
if (TRANSACTIONS_ENABLED) {
conn.setAutoCommit(true);
}
}
}
| public void elimina(Pedido pe) throws errorSQL, errorConexionBD {
System.out.println("GestorPedido.elimina()");
int id = pe.getId();
String sql;
Statement stmt = null;
try {
gd.begin();
sql = "DELETE FROM pedido WHERE id=" + id;
System.out.println("Ejecutando: " + sql);
stmt = gd.getConexion().createStatement();
stmt.executeUpdate(sql);
System.out.println("executeUpdate");
gd.commit();
System.out.println("commit");
stmt.close();
} catch (SQLException e) {
gd.rollback();
throw new errorSQL(e.toString());
} catch (errorConexionBD e) {
System.err.println("Error en GestorPedido.elimina(): " + e);
} catch (errorSQL e) {
System.err.println("Error en GestorPedido.elimina(): " + e);
}
}
| true |
9 | 7,046,481 | 18,317,332 | public InlineImageChunk(URL url) {
super();
this.url = url;
try {
URLConnection urlConn = url.openConnection();
urlConn.setReadTimeout(15000);
ImageInputStream iis = ImageIO.createImageInputStream(urlConn.getInputStream());
Iterator<ImageReader> readers = ImageIO.getImageReaders(iis);
if (readers.hasNext()) {
ImageReader reader = readers.next();
reader.setInput(iis, true);
this.width = reader.getWidth(0);
this.ascent = reader.getHeight(0);
this.descent = 0;
reader.dispose();
} else System.err.println("cannot read width and height of image " + url + " - no suitable reader!");
} catch (Exception exc) {
System.err.println("cannot read width and height of image " + url + " due to exception:");
System.err.println(exc);
exc.printStackTrace(System.err);
}
}
| void execute(Connection conn, Component parent, String context, final ProgressMonitor progressMonitor, ProgressWrapper progressWrapper) throws Exception {
int noOfComponents = m_components.length;
Statement statement = null;
StringBuffer pmNoteBuf = new StringBuffer(m_update ? "Updating " : "Creating ");
pmNoteBuf.append(m_itemNameAbbrev);
pmNoteBuf.append(" ");
pmNoteBuf.append(m_itemNameValue);
final String pmNote = pmNoteBuf.toString();
progressMonitor.setNote(pmNote);
try {
conn.setAutoCommit(false);
int id = -1;
if (m_update) {
statement = conn.createStatement();
String sql = getUpdateSql(noOfComponents, m_id);
statement.executeUpdate(sql);
id = m_id;
if (m_indexesChanged) deleteComponents(conn, id);
} else {
PreparedStatement pStmt = getInsertPrepStmt(conn, noOfComponents);
pStmt.executeUpdate();
Integer res = DbCommon.getAutoGenId(parent, context, pStmt);
if (res == null) return;
id = res.intValue();
}
if (!m_update || m_indexesChanged) {
PreparedStatement insertCompPrepStmt = conn.prepareStatement(getInsertComponentPrepStmtSql());
for (int i = 0; i < noOfComponents; i++) {
createComponent(progressMonitor, m_components, pmNote, id, i, insertCompPrepStmt);
}
}
conn.commit();
m_itemTable.getPrimaryId().setVal(m_item, id);
m_itemCache.updateCache(m_item, id);
} catch (SQLException ex) {
try {
conn.rollback();
} catch (SQLException e) {
e.printStackTrace();
}
throw ex;
} finally {
if (statement != null) {
statement.close();
}
}
}
| false |
10 | 190,292 | 978,946 | private static void main(String[] args) {
try {
File f = new File("test.txt");
if (f.exists()) {
throw new IOException(f + " already exists. I don't want to overwrite it.");
}
StraightStreamReader in;
char[] cbuf = new char[0x1000];
int read;
int totRead;
FileOutputStream out = new FileOutputStream(f);
for (int i = 0x00; i < 0x100; i++) {
out.write(i);
}
out.close();
in = new StraightStreamReader(new FileInputStream(f));
for (int i = 0x00; i < 0x100; i++) {
read = in.read();
if (read != i) {
System.err.println("Error: " + i + " read as " + read);
}
}
in.close();
in = new StraightStreamReader(new FileInputStream(f));
totRead = in.read(cbuf);
if (totRead != 0x100) {
System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead));
}
for (int i = 0x00; i < totRead; i++) {
if (cbuf[i] != i) {
System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]);
}
}
in.close();
in = new StraightStreamReader(new FileInputStream(f));
totRead = 0;
while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) {
totRead += read;
}
if (totRead != 0x100) {
System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead));
}
for (int i = 0x00; i < totRead; i++) {
if (cbuf[i] != i) {
System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]);
}
}
in.close();
in = new StraightStreamReader(new FileInputStream(f));
totRead = 0;
while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) {
totRead += read;
}
if (totRead != 0x100) {
System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead));
}
for (int i = 0x00; i < totRead; i++) {
if (cbuf[i + 0x123] != i) {
System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]);
}
}
in.close();
in = new StraightStreamReader(new FileInputStream(f));
totRead = 0;
while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) {
totRead += read;
}
if (totRead != 0x100) {
System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead));
}
for (int i = 0x00; i < totRead; i++) {
if (cbuf[i + 0x123] != i) {
System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]);
}
}
in.close();
f.delete();
} catch (IOException x) {
System.err.println(x.getMessage());
}
}
| public static void copyFile(File in, File out) throws IOException {
FileChannel inChannel = new FileInputStream(in).getChannel();
FileChannel outChannel = new FileOutputStream(out).getChannel();
try {
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (IOException e) {
throw e;
} finally {
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
}
}
| true |
11 | 19,653,581 | 9,312,243 | public List<SuspectFileProcessingStatus> retrieve() throws Exception {
BufferedOutputStream bos = null;
try {
String listFilePath = GeneralUtils.generateAbsolutePath(getDownloadDirectoryPath(), getListName(), "/");
listFilePath = listFilePath.concat(".xml");
if (!new File(getDownloadDirectoryPath()).exists()) {
FileUtils.forceMkdir(new File(getDownloadDirectoryPath()));
}
FileOutputStream listFileOutputStream = new FileOutputStream(listFilePath);
bos = new BufferedOutputStream(listFileOutputStream);
InputStream is = null;
if (getUseProxy()) {
is = URLUtils.getResponse(getUrl(), getUserName(), getPassword(), URLUtils.HTTP_GET_METHOD, getProxyHost(), getProxyPort());
IOUtils.copyLarge(is, bos);
} else {
URLUtils.getResponse(getUrl(), getUserName(), getPassword(), bos, null);
}
bos.flush();
bos.close();
File listFile = new File(listFilePath);
if (!listFile.exists()) {
throw new IllegalStateException("The list file did not get created");
}
if (isLoggingInfo()) {
logInfo("Downloaded list file : " + listFile);
}
List<SuspectFileProcessingStatus> sfpsList = new ArrayList<SuspectFileProcessingStatus>();
String loadType = GeneralConstants.LOAD_TYPE_FULL;
String feedType = GeneralConstants.EMPTY_TOKEN;
String listName = getListName();
String errorCode = "";
String description = "";
SuspectFileProcessingStatus sfps = getSuspectsLoaderService().storeFileIntoListIncomingDir(listFile, loadType, feedType, listName, errorCode, description);
sfpsList.add(sfps);
if (isLoggingInfo()) {
logInfo("Retrieved list file with SuspectFileProcessingStatus: " + sfps);
}
return sfpsList;
} finally {
if (null != bos) {
bos.close();
}
}
}
| void shutdown(final boolean unexpected) {
if (unexpected) {
log.warn("S H U T D O W N --- received unexpected shutdown request.");
} else {
log.info("S H U T D O W N --- start regular shutdown.");
}
if (this.uncaughtException != null) {
log.warn("Shutdown probably caused by the following Exception.", this.uncaughtException);
}
log.error("check if we need the controler listener infrastructure");
if (this.dumpDataAtEnd) {
new PopulationWriter(this.population, this.network).write(this.controlerIO.getOutputFilename(FILENAME_POPULATION));
new NetworkWriter(this.network).write(this.controlerIO.getOutputFilename(FILENAME_NETWORK));
new ConfigWriter(this.config).write(this.controlerIO.getOutputFilename(FILENAME_CONFIG));
if (!unexpected && this.getConfig().vspExperimental().isWritingOutputEvents()) {
File toFile = new File(this.controlerIO.getOutputFilename("output_events.xml.gz"));
File fromFile = new File(this.controlerIO.getIterationFilename(this.getLastIteration(), "events.xml.gz"));
IOUtils.copyFile(fromFile, toFile);
}
}
if (unexpected) {
log.info("S H U T D O W N --- unexpected shutdown request completed.");
} else {
log.info("S H U T D O W N --- regular shutdown completed.");
}
try {
Runtime.getRuntime().removeShutdownHook(this.shutdownHook);
} catch (IllegalStateException e) {
log.info("Cannot remove shutdown hook. " + e.getMessage());
}
this.shutdownHook = null;
this.collectLogMessagesAppender = null;
IOUtils.closeOutputDirLogging();
}
| true |
12 | 369,572 | 4,761,833 | private void displayDiffResults() throws IOException {
File outFile = File.createTempFile("diff", ".htm");
outFile.deleteOnExit();
FileOutputStream outStream = new FileOutputStream(outFile);
BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream));
out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n");
if (addedTable.length() > 0) {
out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>");
out.write(addedTable.toString());
out.write("</table><br><br>");
}
if (modifiedTable.length() > 0) {
out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>");
out.write(modifiedTable.toString());
out.write("</table><br><br>");
}
if (deletedTable.length() > 0) {
out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>");
out.write(deletedTable.toString());
out.write("</table><br><br>");
}
out.write("<table name=METRICS BORDER>\n");
if (modifiedTable.length() > 0 || deletedTable.length() > 0) {
out.write("<tr><td>Base: </td><td>");
out.write(Long.toString(base));
out.write("</td></tr>\n<tr><td>Deleted: </td><td>");
out.write(Long.toString(deleted));
out.write("</td></tr>\n<tr><td>Modified: </td><td>");
out.write(Long.toString(modified));
out.write("</td></tr>\n<tr><td>Added: </td><td>");
out.write(Long.toString(added));
out.write("</td></tr>\n<tr><td>New & Changed: </td><td>");
out.write(Long.toString(added + modified));
out.write("</td></tr>\n");
}
out.write("<tr><td>Total: </td><td>");
out.write(Long.toString(total));
out.write("</td></tr>\n</table></div>");
redlinesOut.close();
out.flush();
InputStream redlines = new FileInputStream(redlinesTempFile);
byte[] buffer = new byte[4096];
int bytesRead;
while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead);
outStream.write("</BODY></HTML>".getBytes());
outStream.close();
Browser.launch(outFile.toURL().toString());
}
| private void copyFileToDir(MyFile file, MyFile to, wlPanel panel) throws IOException {
Utilities.print("started copying " + file.getAbsolutePath() + "\n");
FileOutputStream fos = new FileOutputStream(new File(to.getAbsolutePath()));
FileChannel foc = fos.getChannel();
FileInputStream fis = new FileInputStream(new File(file.getAbsolutePath()));
FileChannel fic = fis.getChannel();
Date d1 = new Date();
long amount = foc.transferFrom(fic, rest, fic.size() - rest);
fic.close();
foc.force(false);
foc.close();
Date d2 = new Date();
long time = d2.getTime() - d1.getTime();
double secs = time / 1000.0;
double rate = amount / secs;
frame.getStatusArea().append(secs + "s " + "amount: " + Utilities.humanReadable(amount) + " rate: " + Utilities.humanReadable(rate) + "/s\n", "black");
panel.updateView();
}
| true |
13 | 2,285,441 | 16,987,999 | static synchronized Person lookup(PhoneNumber number, String siteName) {
Vector<Person> foundPersons = new Vector<Person>(5);
if (number.isFreeCall()) {
Person p = new Person("", "FreeCall");
p.addNumber(number);
foundPersons.add(p);
} else if (number.isSIPNumber() || number.isQuickDial()) {
Person p = new Person();
p.addNumber(number);
foundPersons.add(p);
} else if (ReverseLookup.rlsMap.containsKey(number.getCountryCode())) {
nummer = number.getAreaNumber();
rls_list = ReverseLookup.rlsMap.get(number.getCountryCode());
Debug.info("Begin reverselookup for: " + nummer);
if (nummer.startsWith(number.getCountryCode())) nummer = nummer.substring(number.getCountryCode().length());
city = "";
for (int i = 0; i < rls_list.size(); i++) {
yield();
rls = rls_list.get(i);
if (!siteName.equals("") && !siteName.equals(rls.getName())) {
Debug.warning("This lookup should be done using a specific site, skipping");
continue;
}
prefix = rls.getPrefix();
ac_length = rls.getAreaCodeLength();
if (!nummer.startsWith(prefix)) nummer = prefix + nummer;
urlstr = rls.getURL();
if (urlstr.contains("$AREACODE")) {
urlstr = urlstr.replaceAll("\\$AREACODE", nummer.substring(prefix.length(), ac_length + prefix.length()));
urlstr = urlstr.replaceAll("\\$NUMBER", nummer.substring(prefix.length() + ac_length));
} else if (urlstr.contains("$PFXAREACODE")) {
urlstr = urlstr.replaceAll("\\$PFXAREACODE", nummer.substring(0, prefix.length() + ac_length));
urlstr = urlstr.replaceAll("\\$NUMBER", nummer.substring(prefix.length() + ac_length));
} else urlstr = urlstr.replaceAll("\\$NUMBER", nummer);
Debug.info("Reverse lookup using: " + urlstr);
url = null;
data = new String[dataLength];
try {
url = new URL(urlstr);
if (url != null) {
try {
con = url.openConnection();
con.setConnectTimeout(5000);
con.setReadTimeout(15000);
con.addRequestProperty("User-Agent", userAgent);
con.connect();
header = "";
charSet = "";
for (int j = 0; ; j++) {
String headerName = con.getHeaderFieldKey(j);
String headerValue = con.getHeaderField(j);
if (headerName == null && headerValue == null) {
break;
}
if ("content-type".equalsIgnoreCase(headerName)) {
String[] split = headerValue.split(";", 2);
for (int k = 0; k < split.length; k++) {
if (split[k].trim().toLowerCase().startsWith("charset=")) {
String[] charsetSplit = split[k].split("=");
charSet = charsetSplit[1].trim();
}
}
}
header += headerName + ": " + headerValue + " | ";
}
Debug.debug("Header of " + rls.getName() + ":" + header);
Debug.debug("CHARSET : " + charSet);
BufferedReader d;
if (charSet.equals("")) {
d = new BufferedReader(new InputStreamReader(con.getInputStream(), "ISO-8859-1"));
} else {
d = new BufferedReader(new InputStreamReader(con.getInputStream(), charSet));
}
int lines = 0;
while (null != ((str = d.readLine()))) {
data[lines] = str;
yield();
if (lines >= dataLength) {
System.err.println("Result > " + dataLength + " Lines");
break;
}
lines++;
}
d.close();
Debug.info("Begin processing response from " + rls.getName());
for (int j = 0; j < rls.size(); j++) {
yield();
firstname = "";
lastname = "";
company = "";
street = "";
zipcode = "";
city = "";
Person p = null;
patterns = rls.getEntry(j);
Pattern namePattern = null;
Pattern streetPattern = null;
Pattern cityPattern = null;
Pattern zipcodePattern = null;
Pattern firstnamePattern = null;
Pattern lastnamePattern = null;
Matcher nameMatcher = null;
Matcher streetMatcher = null;
Matcher cityMatcher = null;
Matcher zipcodeMatcher = null;
Matcher firstnameMatcher = null;
Matcher lastnameMatcher = null;
if (!patterns[ReverseLookupSite.NAME].equals("") && (patterns[ReverseLookupSite.FIRSTNAME].equals("") && patterns[ReverseLookupSite.LASTNAME].equals(""))) {
namePattern = Pattern.compile(patterns[ReverseLookupSite.NAME]);
}
if (!patterns[ReverseLookupSite.STREET].equals("")) {
streetPattern = Pattern.compile(patterns[ReverseLookupSite.STREET]);
}
if (!patterns[ReverseLookupSite.CITY].equals("")) {
cityPattern = Pattern.compile(patterns[ReverseLookupSite.CITY]);
}
if (!patterns[ReverseLookupSite.ZIPCODE].equals("")) {
zipcodePattern = Pattern.compile(patterns[ReverseLookupSite.ZIPCODE]);
}
if (!patterns[ReverseLookupSite.FIRSTNAME].equals("")) {
firstnamePattern = Pattern.compile(patterns[ReverseLookupSite.FIRSTNAME]);
}
if (!patterns[ReverseLookupSite.LASTNAME].equals("")) {
lastnamePattern = Pattern.compile(patterns[ReverseLookupSite.LASTNAME]);
}
for (int line = 0; line < dataLength; line++) {
if (data[line] != null) {
int spaceAlternative = 160;
data[line] = data[line].replaceAll(new Character((char) spaceAlternative).toString(), " ");
if (lastnamePattern != null) {
lastnameMatcher = lastnamePattern.matcher(data[line]);
if (lastnameMatcher.find()) {
str = "";
for (int k = 1; k <= lastnameMatcher.groupCount(); k++) {
if (lastnameMatcher.group(k) != null) str = str + lastnameMatcher.group(k).trim() + " ";
}
lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(str));
lastname = lastname.trim();
lastname = lastname.replaceAll(",", "");
lastname = lastname.replaceAll("%20", " ");
lastname = JFritzUtils.replaceSpecialCharsUTF(lastname);
lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(lastname));
lastname = JFritzUtils.removeDuplicateWhitespace(lastname);
if ("lastname".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) {
p = new Person();
p.addNumber(number.getIntNumber(), "home");
foundPersons.add(p);
}
if (p != null) {
p.setLastName(lastname);
}
}
}
yield();
if (firstnamePattern != null) {
firstnameMatcher = firstnamePattern.matcher(data[line]);
if (firstnameMatcher.find()) {
str = "";
for (int k = 1; k <= firstnameMatcher.groupCount(); k++) {
if (firstnameMatcher.group(k) != null) str = str + firstnameMatcher.group(k).trim() + " ";
}
firstname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(str));
firstname = firstname.trim();
firstname = firstname.replaceAll(",", "");
firstname = firstname.replaceAll("%20", " ");
firstname = JFritzUtils.replaceSpecialCharsUTF(firstname);
firstname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(firstname));
firstname = JFritzUtils.removeDuplicateWhitespace(firstname);
if ("firstname".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) {
p = new Person();
p.addNumber(number.getIntNumber(), "home");
foundPersons.add(p);
}
if (p != null) {
p.setFirstName(firstname);
}
}
}
yield();
if (namePattern != null) {
nameMatcher = namePattern.matcher(data[line]);
if (nameMatcher.find()) {
str = "";
for (int k = 1; k <= nameMatcher.groupCount(); k++) {
if (nameMatcher.group(k) != null) str = str + nameMatcher.group(k).trim() + " ";
}
String[] split;
split = str.split(" ", 2);
lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(split[0]));
lastname = lastname.trim();
lastname = lastname.replaceAll(",", "");
lastname = lastname.replaceAll("%20", " ");
lastname = JFritzUtils.replaceSpecialCharsUTF(lastname);
lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(lastname));
lastname = JFritzUtils.removeDuplicateWhitespace(lastname);
if (split[1].length() > 0) {
firstname = HTMLUtil.stripEntities(split[1]);
if ((firstname.indexOf(" ") > -1) && (firstname.indexOf(" u.") == -1)) {
company = JFritzUtils.removeLeadingSpaces(firstname.substring(firstname.indexOf(" ")).trim());
firstname = JFritzUtils.removeLeadingSpaces(firstname.substring(0, firstname.indexOf(" ")).trim());
} else {
firstname = JFritzUtils.removeLeadingSpaces(firstname.replaceAll(" u. ", " und "));
}
}
firstname = firstname.replaceAll("%20", " ");
firstname = JFritzUtils.replaceSpecialCharsUTF(firstname);
firstname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(firstname));
firstname = JFritzUtils.removeDuplicateWhitespace(firstname);
firstname = firstname.trim();
company = company.replaceAll("%20", " ");
company = JFritzUtils.replaceSpecialCharsUTF(company);
company = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(company));
company = JFritzUtils.removeDuplicateWhitespace(company);
company = company.trim();
if ("name".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) {
p = new Person();
if (company.length() > 0) {
p.addNumber(number.getIntNumber(), "business");
} else {
p.addNumber(number.getIntNumber(), "home");
}
foundPersons.add(p);
}
if (p != null) {
p.setFirstName(firstname);
p.setLastName(lastname);
p.setCompany(company);
}
}
}
yield();
if (streetPattern != null) {
streetMatcher = streetPattern.matcher(data[line]);
if (streetMatcher.find()) {
str = "";
for (int k = 1; k <= streetMatcher.groupCount(); k++) {
if (streetMatcher.group(k) != null) str = str + streetMatcher.group(k).trim() + " ";
}
street = str.replaceAll("%20", " ");
street = JFritzUtils.replaceSpecialCharsUTF(street);
street = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(street));
street = JFritzUtils.removeDuplicateWhitespace(street);
street = street.trim();
if ("street".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) {
p = new Person();
p.addNumber(number.getIntNumber(), "home");
foundPersons.add(p);
}
if (p != null) {
p.setStreet(street);
}
}
}
yield();
if (cityPattern != null) {
cityMatcher = cityPattern.matcher(data[line]);
if (cityMatcher.find()) {
str = "";
for (int k = 1; k <= cityMatcher.groupCount(); k++) {
if (cityMatcher.group(k) != null) str = str + cityMatcher.group(k).trim() + " ";
}
city = str.replaceAll("%20", " ");
city = JFritzUtils.replaceSpecialCharsUTF(city);
city = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(city));
city = JFritzUtils.removeDuplicateWhitespace(city);
city = city.trim();
if ("city".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) {
p = new Person();
p.addNumber(number.getIntNumber(), "home");
foundPersons.add(p);
}
if (p != null) {
p.setCity(city);
}
}
}
yield();
if (zipcodePattern != null) {
zipcodeMatcher = zipcodePattern.matcher(data[line]);
if (zipcodeMatcher.find()) {
str = "";
for (int k = 1; k <= zipcodeMatcher.groupCount(); k++) {
if (zipcodeMatcher.group(k) != null) str = str + zipcodeMatcher.group(k).trim() + " ";
}
zipcode = str.replaceAll("%20", " ");
zipcode = JFritzUtils.replaceSpecialCharsUTF(zipcode);
zipcode = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(zipcode));
zipcode = JFritzUtils.removeDuplicateWhitespace(zipcode);
zipcode = zipcode.trim();
if ("zipcode".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) {
p = new Person();
p.addNumber(number.getIntNumber(), "home");
foundPersons.add(p);
}
if (p != null) {
p.setPostalCode(zipcode);
}
}
}
}
}
if (!firstname.equals("") || !lastname.equals("") || !company.equals("")) break;
}
yield();
if (!firstname.equals("") || !lastname.equals("") || !company.equals("")) {
if (city.equals("")) {
if (number.getCountryCode().equals(ReverseLookup.GERMANY_CODE)) city = ReverseLookupGermany.getCity(nummer); else if (number.getCountryCode().equals(ReverseLookup.AUSTRIA_CODE)) city = ReverseLookupAustria.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.USA_CODE)) city = ReverseLookupUnitedStates.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.TURKEY_CODE)) city = ReverseLookupTurkey.getCity(nummer);
}
return foundPersons.get(0);
}
} catch (IOException e1) {
Debug.error("Error while retrieving " + urlstr);
}
}
} catch (MalformedURLException e) {
Debug.error("URL invalid: " + urlstr);
}
}
yield();
Debug.warning("No match for " + nummer + " found");
if (city.equals("")) {
if (number.getCountryCode().equals(ReverseLookup.GERMANY_CODE)) city = ReverseLookupGermany.getCity(nummer); else if (number.getCountryCode().equals(ReverseLookup.AUSTRIA_CODE)) city = ReverseLookupAustria.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.USA_CODE)) city = ReverseLookupUnitedStates.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.TURKEY_CODE)) city = ReverseLookupTurkey.getCity(nummer);
}
Person p = new Person("", "", "", "", "", city, "", "");
p.addNumber(number.getAreaNumber(), "home");
return p;
} else {
Debug.warning("No reverse lookup sites for: " + number.getCountryCode());
Person p = new Person();
p.addNumber(number.getAreaNumber(), "home");
if (number.getCountryCode().equals(ReverseLookup.GERMANY_CODE)) city = ReverseLookupGermany.getCity(number.getIntNumber()); else if (number.getCountryCode().equals(ReverseLookup.AUSTRIA_CODE)) city = ReverseLookupAustria.getCity(number.getIntNumber()); else if (number.getCountryCode().startsWith(ReverseLookup.USA_CODE)) city = ReverseLookupUnitedStates.getCity(number.getIntNumber()); else if (number.getCountryCode().startsWith(ReverseLookup.TURKEY_CODE)) city = ReverseLookupTurkey.getCity(number.getIntNumber());
p.setCity(city);
return p;
}
return new Person("not found", "Person");
}
| private void copyFile(File sourceFile, File destFile) throws IOException {
if (!sourceFile.exists()) {
return;
}
if (!destFile.exists()) {
destFile.createNewFile();
}
FileChannel source = null;
FileChannel destination = null;
source = new FileInputStream(sourceFile).getChannel();
destination = new FileOutputStream(destFile).getChannel();
if (destination != null && source != null) {
destination.transferFrom(source, 0, source.size());
}
if (source != null) {
source.close();
}
if (destination != null) {
destination.close();
}
}
| false |
14 | 13,041,693 | 116,038 | @Override
public void vote(String urlString, Map<String, String> headData, Map<String, String> paramData) {
HttpURLConnection httpConn = null;
try {
URL url = new URL(urlString);
httpConn = (HttpURLConnection) url.openConnection();
String cookies = getCookies(httpConn);
System.out.println(cookies);
BufferedReader post = new BufferedReader(new InputStreamReader(httpConn.getInputStream(), "GB2312"));
String text = null;
while ((text = post.readLine()) != null) {
System.out.println(text);
}
} catch (MalformedURLException e) {
e.printStackTrace();
throw new VoteBeanException("网址不正确", e);
} catch (IOException e) {
e.printStackTrace();
throw new VoteBeanException("不能打开网址", e);
}
}
| private static void readAndRewrite(File inFile, File outFile) throws IOException {
ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile)));
DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis);
Dataset ds = DcmObjectFactory.getInstance().newDataset();
dcmParser.setDcmHandler(ds.getDcmHandler());
dcmParser.parseDcmFile(null, Tags.PixelData);
PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
System.out.println("reading " + inFile + "...");
pdReader.readPixelData(false);
ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile)));
DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE;
ds.writeDataset(out, dcmEncParam);
ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength());
System.out.println("writing " + outFile + "...");
PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
pdWriter.writePixelData();
out.flush();
out.close();
System.out.println("done!");
}
| false |
15 | 14,157,859 | 3,791,822 | static void copyFile(File file, File file1) throws IOException {
byte abyte0[] = new byte[512];
FileInputStream fileinputstream = new FileInputStream(file);
FileOutputStream fileoutputstream = new FileOutputStream(file1);
int i;
while ((i = fileinputstream.read(abyte0)) > 0) fileoutputstream.write(abyte0, 0, i);
fileinputstream.close();
fileoutputstream.close();
}
| public Void doInBackground() {
setProgress(0);
for (int i = 0; i < uploadFiles.size(); i++) {
String filePath = uploadFiles.elementAt(i).getFilePath();
String fileName = uploadFiles.elementAt(i).getFileName();
String fileMsg = "Uploading file " + (i + 1) + "/" + uploadFiles.size() + "\n";
this.publish(fileMsg);
try {
File inFile = new File(filePath);
FileInputStream in = new FileInputStream(inFile);
byte[] inBytes = new byte[(int) chunkSize];
int count = 1;
int maxCount = (int) (inFile.length() / chunkSize);
if (inFile.length() % chunkSize > 0) {
maxCount++;
}
int readCount = 0;
readCount = in.read(inBytes);
while (readCount > 0) {
File splitFile = File.createTempFile("upl", null, null);
String splitName = splitFile.getPath();
FileOutputStream out = new FileOutputStream(splitFile);
out.write(inBytes, 0, readCount);
out.close();
boolean chunkFinal = (count == maxCount);
fileMsg = " - Sending chunk " + count + "/" + maxCount + ": ";
this.publish(fileMsg);
boolean uploadSuccess = false;
int uploadTries = 0;
while (!uploadSuccess && uploadTries <= 5) {
uploadTries++;
boolean uploadStatus = upload(splitName, fileName, count, chunkFinal);
if (uploadStatus) {
fileMsg = "OK\n";
this.publish(fileMsg);
uploadSuccess = true;
} else {
fileMsg = "ERROR\n";
this.publish(fileMsg);
uploadSuccess = false;
}
}
if (!uploadSuccess) {
fileMsg = "There was an error uploading your files. Please let the pipeline administrator know about this problem. Cut and paste the messages in this box, and supply them.\n";
this.publish(fileMsg);
errorFlag = true;
return null;
}
float thisProgress = (count * 100) / (maxCount);
float completeProgress = (i * (100 / uploadFiles.size()));
float totalProgress = completeProgress + (thisProgress / uploadFiles.size());
setProgress((int) totalProgress);
splitFile.delete();
readCount = in.read(inBytes);
count++;
}
} catch (Exception e) {
this.publish(e.toString());
}
}
return null;
}
| true |
16 | 23,270,032 | 21,907,871 | public void checkin(Object _document) {
this.document = (Document) _document;
synchronized (url) {
OutputStream outputStream = null;
try {
if ("file".equals(url.getProtocol())) {
outputStream = new FileOutputStream(url.getFile());
} else {
URLConnection connection = url.openConnection();
connection.setDoOutput(true);
outputStream = connection.getOutputStream();
}
new XMLOutputter(" ", true).output(this.document, outputStream);
outputStream.flush();
outputStream.close();
} catch (IOException e) {
e.printStackTrace();
}
}
}
| public static void extractFile(String jarArchive, String fileToExtract, String destination) {
FileWriter writer = null;
ZipInputStream zipStream = null;
try {
FileInputStream inputStream = new FileInputStream(jarArchive);
BufferedInputStream bufferedStream = new BufferedInputStream(inputStream);
zipStream = new ZipInputStream(bufferedStream);
writer = new FileWriter(new File(destination));
ZipEntry zipEntry = null;
while ((zipEntry = zipStream.getNextEntry()) != null) {
if (zipEntry.getName().equals(fileToExtract)) {
int size = (int) zipEntry.getSize();
for (int i = 0; i < size; i++) {
writer.write(zipStream.read());
}
}
}
} catch (IOException e) {
e.printStackTrace();
} finally {
if (zipStream != null) try {
zipStream.close();
} catch (IOException e) {
e.printStackTrace();
}
if (writer != null) try {
writer.close();
} catch (IOException e) {
e.printStackTrace();
}
}
}
| false |
17 | 17,586,131 | 14,533,184 | protected void update(String sql, Object[] args) {
Connection conn = null;
PreparedStatement pstmt = null;
try {
conn = JdbcUtils.getConnection();
conn.setAutoCommit(false);
pstmt = conn.prepareStatement(sql);
this.setParameters(pstmt, args);
pstmt.executeUpdate();
conn.commit();
conn.setAutoCommit(true);
} catch (SQLException e) {
try {
if (conn != null) {
conn.rollback();
conn.setAutoCommit(true);
}
} catch (SQLException ex) {
ex.printStackTrace();
}
throw new JdbcDaoException(e.getMessage(), e);
} finally {
JdbcUtils.free(pstmt, conn);
}
}
| public boolean delete(int id) {
boolean deletionOk = false;
Connection conn = null;
try {
conn = db.getConnection();
conn.setAutoCommit(false);
String sql = "DELETE FROM keyphrases WHERE website_id=?";
PreparedStatement ps = conn.prepareStatement(sql);
ps.setInt(1, id);
deletionOk = ps.executeUpdate() == 1;
ps.close();
sql = "DELETE FROM websites WHERE id=?";
ps = conn.prepareStatement(sql);
ps.setInt(1, id);
boolean success = ps.executeUpdate() == 1;
deletionOk = deletionOk && success;
ps.close();
conn.commit();
conn.setAutoCommit(true);
} catch (SQLException sqle) {
try {
conn.rollback();
conn.setAutoCommit(true);
} catch (SQLException sex) {
throw new OsseoFailure("SQL error: roll back failed. ", sex);
}
throw new OsseoFailure("SQL error: cannot remove website with id " + id + ".", sqle);
} finally {
db.putConnection(conn);
}
return deletionOk;
}
| true |
18 | 18,865,693 | 1,477,578 | private static void copyFile(File inputFile, File outputFile) throws IOException {
FileReader in = new FileReader(inputFile);
FileWriter out = new FileWriter(outputFile);
int c;
while ((c = in.read()) != -1) out.write(c);
in.close();
out.close();
}
| public static void copy(FileInputStream source, FileOutputStream dest) throws IOException {
FileChannel in = null, out = null;
try {
in = source.getChannel();
out = dest.getChannel();
long size = in.size();
MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size);
out.write(buf);
} finally {
if (in != null) in.close();
if (out != null) out.close();
}
}
| true |
19 | 5,506,807 | 10,176,882 | public void testPreparedStatement0009() throws Exception {
Statement stmt = con.createStatement();
stmt.executeUpdate("create table #t0009 " + " (i integer not null, " + " s char(10) not null) ");
con.setAutoCommit(false);
PreparedStatement pstmt = con.prepareStatement("insert into #t0009 values (?, ?)");
int rowsToAdd = 8;
final String theString = "abcdefghijklmnopqrstuvwxyz";
int count = 0;
for (int i = 1; i <= rowsToAdd; i++) {
pstmt.setInt(1, i);
pstmt.setString(2, theString.substring(0, i));
count += pstmt.executeUpdate();
}
pstmt.close();
assertEquals(count, rowsToAdd);
con.rollback();
ResultSet rs = stmt.executeQuery("select s, i from #t0009");
assertNotNull(rs);
count = 0;
while (rs.next()) {
count++;
assertEquals(rs.getString(1).trim().length(), rs.getInt(2));
}
assertEquals(count, 0);
con.commit();
pstmt = con.prepareStatement("insert into #t0009 values (?, ?)");
rowsToAdd = 6;
count = 0;
for (int i = 1; i <= rowsToAdd; i++) {
pstmt.setInt(1, i);
pstmt.setString(2, theString.substring(0, i));
count += pstmt.executeUpdate();
}
assertEquals(count, rowsToAdd);
con.commit();
pstmt.close();
rs = stmt.executeQuery("select s, i from #t0009");
count = 0;
while (rs.next()) {
count++;
assertEquals(rs.getString(1).trim().length(), rs.getInt(2));
}
assertEquals(count, rowsToAdd);
con.commit();
stmt.close();
con.setAutoCommit(true);
}
| @SuppressWarnings("unchecked")
protected void processDownloadAction(HttpServletRequest request, HttpServletResponse response) throws Exception {
File transformationFile = new File(xslBase, "file-info.xsl");
HashMap<String, Object> params = new HashMap<String, Object>();
params.putAll(request.getParameterMap());
params.put("{" + Definitions.CONFIGURATION_NAMESPACE + "}configuration", configuration);
params.put("{" + Definitions.REQUEST_NAMESPACE + "}request", request);
params.put("{" + Definitions.RESPONSE_NAMESPACE + "}response", response);
params.put("{" + Definitions.SESSION_NAMESPACE + "}session", request.getSession());
params.put("{" + Definitions.INFOFUZE_NAMESPACE + "}development-mode", new Boolean(Config.getInstance().isDevelopmentMode()));
Transformer transformer = new Transformer();
transformer.setTransformationFile(transformationFile);
transformer.setParams(params);
transformer.setTransformMode(TransformMode.NORMAL);
transformer.setConfiguration(configuration);
transformer.setErrorListener(new TransformationErrorListener(response));
transformer.setLogInfo(false);
DataSourceIf dataSource = new NullSource();
Document fileInfoDoc = XmlUtils.getEmptyDOM();
DOMResult result = new DOMResult(fileInfoDoc);
transformer.transform((Source) dataSource, result);
Element documentElement = fileInfoDoc.getDocumentElement();
if (documentElement.getLocalName().equals("null")) {
response.sendError(HttpServletResponse.SC_UNAUTHORIZED);
return;
}
InputStream is = null;
try {
XPath xpath = XPathFactory.newInstance().newXPath();
String sourceType = XPathUtils.getStringValue(xpath, "source-type", documentElement, null);
String location = XPathUtils.getStringValue(xpath, "location", documentElement, null);
String fileName = XPathUtils.getStringValue(xpath, "file-name", documentElement, null);
String mimeType = XPathUtils.getStringValue(xpath, "mime-type", documentElement, null);
String encoding = XPathUtils.getStringValue(xpath, "encoding", documentElement, null);
if (StringUtils.equals(sourceType, "cifsSource")) {
String domain = XPathUtils.getStringValue(xpath, "domain", documentElement, null);
String userName = XPathUtils.getStringValue(xpath, "username", documentElement, null);
String password = XPathUtils.getStringValue(xpath, "password", documentElement, null);
URI uri = new URI(location);
if (StringUtils.isNotBlank(userName)) {
String userInfo = "";
if (StringUtils.isNotBlank(domain)) {
userInfo = userInfo + domain + ";";
}
userInfo = userInfo + userName;
if (StringUtils.isNotBlank(password)) {
userInfo = userInfo + ":" + password;
}
uri = new URI(uri.getScheme(), userInfo, uri.getHost(), uri.getPort(), uri.getPath(), uri.getQuery(), uri.getFragment());
}
SmbFile smbFile = new SmbFile(uri.toURL());
is = new SmbFileInputStream(smbFile);
} else if (StringUtils.equals(sourceType, "localFileSystemSource")) {
File file = new File(location);
is = new FileInputStream(file);
} else {
logger.error("Source type \"" + ((sourceType != null) ? sourceType : "") + "\" not supported");
response.sendError(HttpServletResponse.SC_INTERNAL_SERVER_ERROR);
return;
}
if (StringUtils.isBlank(mimeType) && StringUtils.isBlank(encoding)) {
response.setContentType(Definitions.MIMETYPE_BINARY);
} else if (StringUtils.isBlank(encoding)) {
response.setContentType(mimeType);
} else {
response.setContentType(mimeType + ";charset=" + encoding);
}
if (request.getParameterMap().containsKey(Definitions.REQUEST_PARAMNAME_DOWNLOAD)) {
response.setHeader("Content-Disposition", "attachment; filename=" + fileName);
}
IOUtils.copy(new BufferedInputStream(is), response.getOutputStream());
} finally {
if (is != null) {
is.close();
}
}
}
| false |
20 | 2,746,011 | 5,105,540 | @RequestMapping(value = "/privatefiles/{file_name}")
public void getFile(@PathVariable("file_name") String fileName, HttpServletResponse response, Principal principal) {
try {
Boolean validUser = false;
final String currentUser = principal.getName();
Authentication auth = SecurityContextHolder.getContext().getAuthentication();
if (!auth.getPrincipal().equals(new String("anonymousUser"))) {
MetabolightsUser metabolightsUser = (MetabolightsUser) auth.getPrincipal();
if (metabolightsUser != null && metabolightsUser.isCurator()) validUser = true;
}
if (currentUser != null) {
Study study = studyService.getBiiStudy(fileName, true);
Collection<User> users = study.getUsers();
Iterator<User> iter = users.iterator();
while (iter.hasNext()) {
User user = iter.next();
if (user.getUserName().equals(currentUser)) {
validUser = true;
break;
}
}
}
if (!validUser) throw new RuntimeException(PropertyLookup.getMessage("Entry.notAuthorised"));
try {
InputStream is = new FileInputStream(privateFtpDirectory + fileName + ".zip");
response.setContentType("application/zip");
IOUtils.copy(is, response.getOutputStream());
} catch (Exception e) {
throw new RuntimeException(PropertyLookup.getMessage("Entry.fileMissing"));
}
response.flushBuffer();
} catch (IOException ex) {
logger.info("Error writing file to output stream. Filename was '" + fileName + "'");
throw new RuntimeException("IOError writing file to output stream");
}
}
| public AudioInputStream getAudioInputStream(URL url) throws UnsupportedAudioFileException, IOException {
if (TDebug.TraceAudioFileReader) {
TDebug.out("MpegAudioFileReader.getAudioInputStream(URL): begin");
}
long lFileLengthInBytes = AudioSystem.NOT_SPECIFIED;
URLConnection conn = url.openConnection();
boolean isShout = false;
int toRead = 4;
byte[] head = new byte[toRead];
conn.setRequestProperty("Icy-Metadata", "1");
BufferedInputStream bInputStream = new BufferedInputStream(conn.getInputStream());
bInputStream.mark(toRead);
int read = bInputStream.read(head, 0, toRead);
if ((read > 2) && (((head[0] == 'I') | (head[0] == 'i')) && ((head[1] == 'C') | (head[1] == 'c')) && ((head[2] == 'Y') | (head[2] == 'y')))) isShout = true;
bInputStream.reset();
InputStream inputStream = null;
if (isShout == true) {
IcyInputStream icyStream = new IcyInputStream(bInputStream);
icyStream.addTagParseListener(IcyListener.getInstance());
inputStream = icyStream;
} else {
String metaint = conn.getHeaderField("icy-metaint");
if (metaint != null) {
IcyInputStream icyStream = new IcyInputStream(bInputStream, metaint);
icyStream.addTagParseListener(IcyListener.getInstance());
inputStream = icyStream;
} else {
inputStream = bInputStream;
}
}
AudioInputStream audioInputStream = null;
try {
audioInputStream = getAudioInputStream(inputStream, lFileLengthInBytes);
} catch (UnsupportedAudioFileException e) {
inputStream.close();
throw e;
} catch (IOException e) {
inputStream.close();
throw e;
}
if (TDebug.TraceAudioFileReader) {
TDebug.out("MpegAudioFileReader.getAudioInputStream(URL): end");
}
return audioInputStream;
}
| false |
21 | 3,287,282 | 13,431,536 | public void googleImageSearch(String start) {
try {
String u = "http://images.google.com/images?q=" + custom + start;
if (u.contains(" ")) {
u = u.replace(" ", "+");
}
URL url = new URL(u);
HttpURLConnection httpcon = (HttpURLConnection) url.openConnection();
httpcon.addRequestProperty("User-Agent", "Mozilla/4.76");
BufferedReader readIn = new BufferedReader(new InputStreamReader(httpcon.getInputStream()));
googleImages.clear();
String text = "";
String lin = "";
while ((lin = readIn.readLine()) != null) {
text += lin;
}
readIn.close();
if (text.contains("\n")) {
text = text.replace("\n", "");
}
String[] array = text.split("\\Qhref=\"/imgres?imgurl=\\E");
for (String s : array) {
if (s.startsWith("http://") || s.startsWith("https://") && s.contains("&")) {
String s1 = s.substring(0, s.indexOf("&"));
googleImages.add(s1);
}
}
} catch (Exception ex4) {
MusicBoxView.showErrorDialog(ex4);
}
jButton4.setEnabled(true);
jButton2.setEnabled(true);
getContentPane().remove(jLabel1);
ImageIcon icon;
try {
icon = new ImageIcon(new URL(googleImages.elementAt(googleImageLocation)));
int h = icon.getIconHeight();
int w = icon.getIconWidth();
jLabel1.setSize(w, h);
jLabel1.setIcon(icon);
add(jLabel1, BorderLayout.CENTER);
} catch (MalformedURLException ex) {
MusicBoxView.showErrorDialog(ex);
jLabel1.setIcon(MusicBoxView.noImage);
}
add(jPanel1, BorderLayout.PAGE_END);
pack();
}
| @Override
public int updateStatus(UserInfo userInfo, String status) throws Exception {
OAuthConsumer consumer = SnsConstant.getOAuthConsumer(SnsConstant.SOHU);
consumer.setTokenWithSecret(userInfo.getAccessToken(), userInfo.getAccessSecret());
try {
URL url = new URL(SnsConstant.SOHU_UPDATE_STATUS_URL);
HttpURLConnection request = (HttpURLConnection) url.openConnection();
request.setDoOutput(true);
request.setRequestMethod("POST");
HttpParameters para = new HttpParameters();
para.put("status", StringUtils.utf8Encode(status).replaceAll("\\+", "%20"));
consumer.setAdditionalParameters(para);
consumer.sign(request);
OutputStream ot = request.getOutputStream();
ot.write(("status=" + URLEncoder.encode(status, "utf-8")).replaceAll("\\+", "%20").getBytes());
ot.flush();
ot.close();
System.out.println("Sending request...");
request.connect();
System.out.println("Response: " + request.getResponseCode() + " " + request.getResponseMessage());
BufferedReader reader = new BufferedReader(new InputStreamReader(request.getInputStream()));
String b = null;
while ((b = reader.readLine()) != null) {
System.out.println(b);
}
return SnsConstant.SOHU_UPDATE_STATUS_SUCC_WHAT;
} catch (Exception e) {
SnsConstant.SOHU_OPERATOR_FAIL_REASON = processException(e.getMessage());
return SnsConstant.SOHU_UPDATE_STATUS_FAIL_WHAT;
}
}
| false |
22 | 16,744,397 | 18,315,736 | public void copyToZip(ZipOutputStream zout, String entryName) throws IOException {
close();
ZipEntry entry = new ZipEntry(entryName);
zout.putNextEntry(entry);
if (!isEmpty() && this.tmpFile.exists()) {
InputStream in = new FileInputStream(this.tmpFile);
IOUtils.copyTo(in, zout);
in.close();
}
zout.flush();
zout.closeEntry();
delete();
}
| private List<String> getTaxaList() {
List<String> taxa = new Vector<String>();
String domain = m_domain.getStringValue();
String id = "";
if (domain.equalsIgnoreCase("Eukaryota")) id = "eukaryota";
try {
URL url = new URL("http://www.ebi.ac.uk/genomes/" + id + ".details.txt");
BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream()));
String link = "";
String key = "";
String name = "";
int counter = 0;
String line = "";
reader.readLine();
while ((line = reader.readLine()) != null) {
String[] st = line.split("\t");
ena_details ena = new ena_details(st[0], st[1], st[2], st[3], st[4]);
ENADataHolder.instance().put(ena.desc, ena);
taxa.add(ena.desc);
}
reader.close();
} catch (MalformedURLException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
return taxa;
}
| false |
23 | 18,269,744 | 10,140,251 | public static boolean encodeFileToFile(String infile, String outfile) {
boolean success = false;
java.io.InputStream in = null;
java.io.OutputStream out = null;
try {
in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE);
out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile));
byte[] buffer = new byte[65536];
int read = -1;
while ((read = in.read(buffer)) >= 0) {
out.write(buffer, 0, read);
}
success = true;
} catch (java.io.IOException exc) {
exc.printStackTrace();
} finally {
try {
in.close();
} catch (Exception exc) {
}
try {
out.close();
} catch (Exception exc) {
}
}
return success;
}
| protected String contentString() {
String result = null;
URL url;
String encoding = null;
try {
url = url();
URLConnection connection = url.openConnection();
connection.setDoInput(true);
connection.setDoOutput(false);
connection.setUseCaches(false);
for (Enumeration e = bindingKeys().objectEnumerator(); e.hasMoreElements(); ) {
String key = (String) e.nextElement();
if (key.startsWith("?")) {
connection.setRequestProperty(key.substring(1), valueForBinding(key).toString());
}
}
if (connection.getContentEncoding() != null) {
encoding = connection.getContentEncoding();
}
if (encoding == null) {
encoding = (String) valueForBinding("encoding");
}
if (encoding == null) {
encoding = "UTF-8";
}
InputStream stream = connection.getInputStream();
byte bytes[] = ERXFileUtilities.bytesFromInputStream(stream);
stream.close();
result = new String(bytes, encoding);
} catch (IOException ex) {
throw NSForwardException._runtimeExceptionForThrowable(ex);
}
return result;
}
| false |
24 | 14,876,163 | 3,260,787 | public static void copyFile(File in, File out) throws IOException {
FileChannel inChannel = new FileInputStream(in).getChannel();
FileChannel outChannel = new FileOutputStream(out).getChannel();
try {
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (IOException e) {
throw e;
} finally {
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
}
}
| public CopyAllDataToOtherFolderResponse CopyAllDataToOtherFolder(DPWSContext context, CopyAllDataToOtherFolder CopyAllDataInps) throws DPWSException {
CopyAllDataToOtherFolderResponse cpyRp = new CopyAllDataToOtherFolderResponseImpl();
int hany = 0;
String errorMsg = null;
try {
if ((rootDir == null) || (rootDir.length() == (-1))) {
errorMsg = LocalStorVerify.ISNT_ROOTFLD;
} else {
String sourceN = CopyAllDataInps.getSourceName();
String targetN = CopyAllDataInps.getTargetName();
if (LocalStorVerify.isValid(sourceN) && LocalStorVerify.isValid(targetN)) {
String srcDir = rootDir + File.separator + sourceN;
String trgDir = rootDir + File.separator + targetN;
if (LocalStorVerify.isLength(srcDir) && LocalStorVerify.isLength(trgDir)) {
for (File fs : new File(srcDir).listFiles()) {
File ft = new File(trgDir + '\\' + fs.getName());
FileChannel in = null, out = null;
try {
in = new FileInputStream(fs).getChannel();
out = new FileOutputStream(ft).getChannel();
long size = in.size();
MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size);
out.write(buf);
} finally {
if (in != null) in.close();
if (out != null) out.close();
hany++;
}
}
} else {
errorMsg = LocalStorVerify.FLD_TOOLNG;
}
} else {
errorMsg = LocalStorVerify.ISNT_VALID;
}
}
} catch (Throwable tr) {
tr.printStackTrace();
errorMsg = tr.getMessage();
hany = (-1);
}
if (errorMsg != null) {
}
cpyRp.setNum(hany);
return cpyRp;
}
| true |
25 | 14,313,659 | 10,109,343 | private int writeTraceFile(final File destination_file, final String trace_file_name, final String trace_file_path) {
URL url = null;
BufferedInputStream is = null;
FileOutputStream fo = null;
BufferedOutputStream os = null;
int b = 0;
if (destination_file == null) {
return 0;
}
try {
url = new URL("http://" + trace_file_path + "/" + trace_file_name);
is = new BufferedInputStream(url.openStream());
fo = new FileOutputStream(destination_file);
os = new BufferedOutputStream(fo);
while ((b = is.read()) != -1) {
os.write(b);
}
os.flush();
is.close();
os.close();
} catch (Exception e) {
System.err.println(url.toString());
Utilities.unexpectedException(e, this, CONTACT);
return 0;
}
return 1;
}
| public void readData() throws IOException {
i = 0;
j = 0;
URL url = getClass().getResource("resources/tuneGridMaster.dat");
InputStream is = url.openStream();
InputStreamReader isr = new InputStreamReader(is);
BufferedReader br = new BufferedReader(isr);
s = br.readLine();
StringTokenizer st = new StringTokenizer(s);
tune_x[i][j] = Double.parseDouble(st.nextToken());
gridmin = tune_x[i][j];
temp_prev = tune_x[i][j];
tune_y[i][j] = Double.parseDouble(st.nextToken());
kd[i][j] = Double.parseDouble(st.nextToken());
kfs[i][j] = Double.parseDouble(st.nextToken());
kfl[i][j] = Double.parseDouble(st.nextToken());
kdee[i][j] = Double.parseDouble(st.nextToken());
kdc[i][j] = Double.parseDouble(st.nextToken());
kfc[i][j] = Double.parseDouble(st.nextToken());
j++;
int k = 0;
while ((s = br.readLine()) != null) {
st = new StringTokenizer(s);
temp_new = Double.parseDouble(st.nextToken());
if (temp_new != temp_prev) {
temp_prev = temp_new;
i++;
j = 0;
}
tune_x[i][j] = temp_new;
tune_y[i][j] = Double.parseDouble(st.nextToken());
kd[i][j] = Double.parseDouble(st.nextToken());
kfs[i][j] = Double.parseDouble(st.nextToken());
kfl[i][j] = Double.parseDouble(st.nextToken());
kdee[i][j] = Double.parseDouble(st.nextToken());
kdc[i][j] = Double.parseDouble(st.nextToken());
kfc[i][j] = Double.parseDouble(st.nextToken());
imax = i;
jmax = j;
j++;
k++;
}
gridmax = tune_x[i][j - 1];
}
| false |
26 | 13,745,376 | 10,567,003 | public IStatus runInUIThread(IProgressMonitor monitor) {
monitor.beginTask(Strings.MSG_CONNECT_SERVER, 3);
InputStream in = null;
try {
URL url = createOpenUrl(resource, pref);
if (url != null) {
URLConnection con = url.openConnection();
monitor.worked(1);
monitor.setTaskName(Strings.MSG_WAIT_FOR_SERVER);
con.connect();
in = con.getInputStream();
in.read();
monitor.worked(1);
monitor.setTaskName(NLS.bind(Strings.MSG_OPEN_URL, url));
open(url, resource.getProject(), pref);
monitor.worked(1);
}
} catch (ConnectException con) {
if (count < 3) {
ConnectAndOpenJob job = new ConnectAndOpenJob(resource, pref, ++count);
job.schedule(1000L);
} else {
Activator.log(con);
}
} catch (Exception e) {
Activator.log(e);
} finally {
Streams.close(in);
monitor.done();
}
return Status.OK_STATUS;
}
| private InputStream loadSource(String url) throws ClientProtocolException, IOException {
HttpClient httpclient = new DefaultHttpClient();
httpclient.getParams().setParameter(HTTP.USER_AGENT, "Mozilla/4.0 (compatible; MSIE 7.0b; Windows NT 6.0)");
HttpGet httpget = new HttpGet(url);
HttpResponse response = httpclient.execute(httpget);
HttpEntity entity = response.getEntity();
return entity.getContent();
}
| false |
27 | 22,075,089 | 20,623,710 | public static void executa(String arquivo, String filial, String ip) {
String drive = arquivo.substring(0, 2);
if (drive.indexOf(":") == -1) drive = "";
Properties p = Util.lerPropriedades(arquivo);
String servidor = p.getProperty("servidor");
String impressora = p.getProperty("fila");
String arqRel = new String(drive + p.getProperty("arquivo"));
String copias = p.getProperty("copias");
if (filial.equalsIgnoreCase(servidor)) {
Socket s = null;
int tentativas = 0;
boolean conectado = false;
while (!conectado) {
try {
tentativas++;
System.out.println("Tentando conectar " + ip + " (" + tentativas + ")");
s = new Socket(ip, 7000);
conectado = s.isConnected();
} catch (ConnectException ce) {
System.err.println(ce.getMessage());
System.err.println(ce.getCause());
} catch (UnknownHostException uhe) {
System.err.println(uhe.getMessage());
} catch (IOException ioe) {
System.err.println(ioe.getMessage());
}
}
FileInputStream in = null;
BufferedOutputStream out = null;
try {
in = new FileInputStream(new File(arqRel));
out = new BufferedOutputStream(new GZIPOutputStream(s.getOutputStream()));
} catch (FileNotFoundException e3) {
e3.printStackTrace();
} catch (IOException e3) {
e3.printStackTrace();
}
String arqtr = arqRel.substring(2);
System.out.println("Proximo arquivo: " + arqRel + " ->" + arqtr);
while (arqtr.length() < 30) arqtr += " ";
while (impressora.length() < 30) impressora += " ";
byte aux[] = new byte[30];
byte cop[] = new byte[2];
try {
aux = arqtr.getBytes("UTF8");
out.write(aux);
aux = impressora.getBytes("UTF8");
out.write(aux);
cop = copias.getBytes("UTF8");
out.write(cop);
out.flush();
} catch (UnsupportedEncodingException e2) {
e2.printStackTrace();
} catch (IOException e2) {
e2.printStackTrace();
}
byte b[] = new byte[1024];
int nBytes;
try {
while ((nBytes = in.read(b)) != -1) out.write(b, 0, nBytes);
out.flush();
out.close();
in.close();
s.close();
} catch (IOException e1) {
e1.printStackTrace();
}
System.out.println("Arquivo " + arqRel + " foi transmitido. \n\n");
try {
Thread.sleep(1000);
} catch (InterruptedException e) {
e.printStackTrace();
}
SimpleDateFormat dfArq = new SimpleDateFormat("yyyy-MM-dd");
SimpleDateFormat dfLog = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
String arqLog = "log" + filial + dfArq.format(new Date()) + ".txt";
PrintWriter pw = null;
try {
pw = new PrintWriter(new FileWriter(arqLog, true));
} catch (IOException e) {
e.printStackTrace();
}
pw.println("Arquivo: " + arquivo + " " + dfLog.format(new Date()));
pw.flush();
pw.close();
File f = new File(arquivo);
while (!f.delete()) {
System.out.println("Erro apagando " + arquivo);
}
}
}
| public static synchronized void repartition(File[] sourceFiles, File targetDirectory, String prefix, long maxUnitBases, long maxUnitEntries) throws Exception {
if (!targetDirectory.exists()) {
if (!targetDirectory.mkdirs()) throw new Exception("Could not create directory " + targetDirectory.getAbsolutePath());
}
File tmpFile = new File(targetDirectory, "tmp.fasta");
FileOutputStream fos = new FileOutputStream(tmpFile);
FileChannel fco = fos.getChannel();
for (File file : sourceFiles) {
FileInputStream fis = new FileInputStream(file);
FileChannel fci = fis.getChannel();
ByteBuffer buffer = ByteBuffer.allocate(64000);
while (fci.read(buffer) > 0) {
buffer.flip();
fco.write(buffer);
buffer.clear();
}
fci.close();
}
fco.close();
FastaFile fastaFile = new FastaFile(tmpFile);
fastaFile.split(targetDirectory, prefix, maxUnitBases, maxUnitEntries);
tmpFile.delete();
}
| true |
28 | 19,217,522 | 10,385,493 | boolean copyFileStructure(File oldFile, File newFile) {
if (oldFile == null || newFile == null) return false;
File searchFile = newFile;
do {
if (oldFile.equals(searchFile)) return false;
searchFile = searchFile.getParentFile();
} while (searchFile != null);
if (oldFile.isDirectory()) {
if (progressDialog != null) {
progressDialog.setDetailFile(oldFile, ProgressDialog.COPY);
}
if (simulateOnly) {
} else {
if (!newFile.mkdirs()) return false;
}
File[] subFiles = oldFile.listFiles();
if (subFiles != null) {
if (progressDialog != null) {
progressDialog.addWorkUnits(subFiles.length);
}
for (int i = 0; i < subFiles.length; i++) {
File oldSubFile = subFiles[i];
File newSubFile = new File(newFile, oldSubFile.getName());
if (!copyFileStructure(oldSubFile, newSubFile)) return false;
if (progressDialog != null) {
progressDialog.addProgress(1);
if (progressDialog.isCancelled()) return false;
}
}
}
} else {
if (simulateOnly) {
} else {
FileReader in = null;
FileWriter out = null;
try {
in = new FileReader(oldFile);
out = new FileWriter(newFile);
int count;
while ((count = in.read()) != -1) out.write(count);
} catch (FileNotFoundException e) {
return false;
} catch (IOException e) {
return false;
} finally {
try {
if (in != null) in.close();
if (out != null) out.close();
} catch (IOException e) {
return false;
}
}
}
}
return true;
}
| public void writeBack(File destinationFile, boolean makeCopy) throws IOException {
if (makeCopy) {
FileChannel sourceChannel = new java.io.FileInputStream(getFile()).getChannel();
FileChannel destinationChannel = new java.io.FileOutputStream(destinationFile).getChannel();
sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel);
sourceChannel.close();
destinationChannel.close();
} else {
getFile().renameTo(destinationFile);
}
if (getExifTime() != null && getOriginalTime() != null && !getExifTime().equals(getOriginalTime())) {
String adjustArgument = "-ts" + m_dfJhead.format(getExifTime());
ProcessBuilder pb = new ProcessBuilder(m_tm.getJheadCommand(), adjustArgument, destinationFile.getAbsolutePath());
pb.directory(destinationFile.getParentFile());
System.out.println(pb.command().get(0) + " " + pb.command().get(1) + " " + pb.command().get(2));
final Process p = pb.start();
try {
p.waitFor();
} catch (InterruptedException e) {
e.printStackTrace();
}
}
}
| true |
29 | 7,681,426 | 11,717,079 | public void extractProfile(String parentDir, String fileName, String profileName) {
try {
byte[] buf = new byte[1024];
ZipInputStream zipinputstream = null;
ZipEntry zipentry;
if (createProfileDirectory(profileName, parentDir)) {
debug("the profile directory created .starting the profile extraction");
String profilePath = parentDir + File.separator + fileName;
zipinputstream = new ZipInputStream(new FileInputStream(profilePath));
zipentry = zipinputstream.getNextEntry();
while (zipentry != null) {
String entryName = zipentry.getName();
int n;
FileOutputStream fileoutputstream;
File newFile = new File(entryName);
String directory = newFile.getParent();
if (directory == null) {
if (newFile.isDirectory()) break;
}
fileoutputstream = new FileOutputStream(parentDir + File.separator + profileName + File.separator + newFile.getName());
while ((n = zipinputstream.read(buf, 0, 1024)) > -1) fileoutputstream.write(buf, 0, n);
fileoutputstream.close();
zipinputstream.closeEntry();
zipentry = zipinputstream.getNextEntry();
}
zipinputstream.close();
debug("deleting the profile.zip file");
File newFile = new File(profilePath);
if (newFile.delete()) {
debug("the " + "[" + profilePath + "]" + " deleted successfully");
} else {
debug("profile" + "[" + profilePath + "]" + "deletion fail");
throw new IllegalArgumentException("Error: deletion error!");
}
} else {
debug("error creating the profile directory");
}
} catch (Exception e) {
e.printStackTrace();
}
}
| void copyFile(File inputFile, File outputFile) {
try {
FileReader in;
in = new FileReader(inputFile);
FileWriter out = new FileWriter(outputFile);
int c;
while ((c = in.read()) != -1) out.write(c);
in.close();
out.close();
} catch (FileNotFoundException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
}
| true |
30 | 8,831,301 | 8,365,268 | public void run() {
String s;
s = "";
try {
URL url = new URL("http://www.m-w.com/dictionary/" + word);
BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream()));
String str;
while (((str = in.readLine()) != null) && (!stopped)) {
s = s + str;
}
in.close();
} catch (MalformedURLException e) {
} catch (IOException e) {
}
Pattern pattern = Pattern.compile("Main Entry:.+?<br>(.+?)</td>", Pattern.CASE_INSENSITIVE | Pattern.DOTALL);
Matcher matcher = pattern.matcher(s);
java.io.StringWriter wr = new java.io.StringWriter();
HTMLDocument doc = null;
HTMLEditorKit kit = (HTMLEditorKit) editor.getEditorKit();
try {
doc = (HTMLDocument) editor.getDocument();
} catch (Exception e) {
}
System.out.println(wr);
editor.setContentType("text/html");
if (matcher.find()) try {
kit.insertHTML(doc, editor.getCaretPosition(), "<HR>" + matcher.group(1) + "<HR>", 0, 0, null);
} catch (Exception e) {
System.out.println(e.getMessage());
} else try {
kit.insertHTML(doc, editor.getCaretPosition(), "<HR><FONT COLOR='RED'>NOT FOUND!!</FONT><HR>", 0, 0, null);
} catch (Exception e) {
System.out.println(e.getMessage());
}
button.setEnabled(true);
}
| public static String[] readStats() throws Exception {
URL url = null;
BufferedReader reader = null;
StringBuilder stringBuilder;
try {
url = new URL("http://localhost:" + port + webctx + "/shared/js/libOO/health_check.sjs");
HttpURLConnection connection = (HttpURLConnection) url.openConnection();
connection.setRequestMethod("GET");
connection.setReadTimeout(10 * 1000);
connection.connect();
reader = new BufferedReader(new InputStreamReader(connection.getInputStream()));
stringBuilder = new StringBuilder();
String line = null;
while ((line = reader.readLine()) != null) {
stringBuilder.append(line);
}
return stringBuilder.toString().split(",");
} catch (Exception e) {
e.printStackTrace();
throw e;
} finally {
if (reader != null) {
try {
reader.close();
} catch (IOException ioe) {
ioe.printStackTrace();
}
}
}
}
| true |
31 | 308,643 | 21,172,450 | public void convert(File src, File dest) throws IOException {
InputStream in = new BufferedInputStream(new FileInputStream(src));
DcmParser p = pfact.newDcmParser(in);
Dataset ds = fact.newDataset();
p.setDcmHandler(ds.getDcmHandler());
try {
FileFormat format = p.detectFileFormat();
if (format != FileFormat.ACRNEMA_STREAM) {
System.out.println("\n" + src + ": not an ACRNEMA stream!");
return;
}
p.parseDcmFile(format, Tags.PixelData);
if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) {
System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert");
return;
}
boolean hasPixelData = p.getReadTag() == Tags.PixelData;
boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12;
int pxlen = p.getReadLength();
if (hasPixelData) {
if (inflate) {
ds.putUS(Tags.BitsAllocated, 16);
pxlen = pxlen * 4 / 3;
}
if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) {
System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert");
return;
}
}
ds.putUI(Tags.StudyInstanceUID, uid(studyUID));
ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID));
ds.putUI(Tags.SOPInstanceUID, uid(instUID));
ds.putUI(Tags.SOPClassUID, classUID);
if (!ds.contains(Tags.NumberOfSamples)) {
ds.putUS(Tags.NumberOfSamples, 1);
}
if (!ds.contains(Tags.PhotometricInterpretation)) {
ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2");
}
if (fmi) {
ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian));
}
OutputStream out = new BufferedOutputStream(new FileOutputStream(dest));
try {
} finally {
ds.writeFile(out, encodeParam());
if (hasPixelData) {
if (!skipGroupLen) {
out.write(PXDATA_GROUPLEN);
int grlen = pxlen + 8;
out.write((byte) grlen);
out.write((byte) (grlen >> 8));
out.write((byte) (grlen >> 16));
out.write((byte) (grlen >> 24));
}
out.write(PXDATA_TAG);
out.write((byte) pxlen);
out.write((byte) (pxlen >> 8));
out.write((byte) (pxlen >> 16));
out.write((byte) (pxlen >> 24));
}
if (inflate) {
int b2, b3;
for (; pxlen > 0; pxlen -= 3) {
out.write(in.read());
b2 = in.read();
b3 = in.read();
out.write(b2 & 0x0f);
out.write(b2 >> 4 | ((b3 & 0x0f) << 4));
out.write(b3 >> 4);
}
} else {
for (; pxlen > 0; --pxlen) {
out.write(in.read());
}
}
out.close();
}
System.out.print('.');
} finally {
in.close();
}
}
| public static void unzip2(String strZipFile, String folder) throws IOException, ArchiveException {
FileUtil.fileExists(strZipFile, true);
final InputStream is = new FileInputStream(strZipFile);
ArchiveInputStream in = new ArchiveStreamFactory().createArchiveInputStream("zip", is);
ZipArchiveEntry entry = null;
OutputStream out = null;
while ((entry = (ZipArchiveEntry) in.getNextEntry()) != null) {
File zipPath = new File(folder);
File destinationFilePath = new File(zipPath, entry.getName());
destinationFilePath.getParentFile().mkdirs();
if (entry.isDirectory()) {
continue;
} else {
out = new FileOutputStream(new File(folder, entry.getName()));
IOUtils.copy(in, out);
out.close();
}
}
in.close();
}
| true |
32 | 11,322,573 | 3,224,152 | private void preprocessObjects(GeoObject[] objects) throws IOException {
System.out.println("objects.length " + objects.length);
for (int i = 0; i < objects.length; i++) {
String fileName = objects[i].getPath();
int dotindex = fileName.lastIndexOf(".");
dotindex = dotindex < 0 ? 0 : dotindex;
String tmp = dotindex < 1 ? fileName : fileName.substring(0, dotindex + 3) + "w";
System.out.println("i: " + " world filename " + tmp);
File worldFile = new File(tmp);
if (worldFile.exists()) {
BufferedReader worldFileReader = new BufferedReader(new InputStreamReader(new FileInputStream(worldFile)));
if (staticDebugOn) debug("b4nextline: ");
line = worldFileReader.readLine();
if (staticDebugOn) debug("line: " + line);
if (line != null) {
line = worldFileReader.readLine();
if (staticDebugOn) debug("line: " + line);
tokenizer = new StringTokenizer(line, " \n\t\r\"", false);
objects[i].setLon(Double.valueOf(tokenizer.nextToken()).doubleValue());
line = worldFileReader.readLine();
if (staticDebugOn) debug("line: " + line);
tokenizer = new StringTokenizer(line, " \n\t\r\"", false);
objects[i].setLat(Double.valueOf(tokenizer.nextToken()).doubleValue());
}
}
File file = new File(objects[i].getPath());
if (file.exists()) {
System.out.println("object src file found ");
int slashindex = fileName.lastIndexOf(java.io.File.separator);
slashindex = slashindex < 0 ? 0 : slashindex;
if (slashindex == 0) {
slashindex = fileName.lastIndexOf("/");
slashindex = slashindex < 0 ? 0 : slashindex;
}
tmp = slashindex < 1 ? fileName : fileName.substring(slashindex + 1, fileName.length());
System.out.println("filename " + destinationDirectory + XPlat.fileSep + tmp);
objects[i].setPath(tmp);
file = new File(fileName);
if (file.exists()) {
DataInputStream dataIn = new DataInputStream(new BufferedInputStream(new FileInputStream(fileName)));
DataOutputStream dataOut = new DataOutputStream(new BufferedOutputStream(new FileOutputStream(destinationDirectory + XPlat.fileSep + tmp)));
System.out.println("copying to " + destinationDirectory + XPlat.fileSep + tmp);
for (; ; ) {
try {
dataOut.writeShort(dataIn.readShort());
} catch (EOFException e) {
break;
} catch (IOException e) {
break;
}
}
dataOut.close();
}
}
}
}
| private String transferWSDL(String usernameAndPassword) throws WiseConnectionException {
String filePath = null;
try {
URL endpoint = new URL(wsdlURL);
HttpURLConnection conn = (HttpURLConnection) endpoint.openConnection();
conn.setDoOutput(false);
conn.setDoInput(true);
conn.setUseCaches(false);
conn.setRequestMethod("GET");
conn.setRequestProperty("Accept", "text/xml,application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5");
conn.setRequestProperty("Connection", "close");
if (this.password != null) {
conn.setRequestProperty("Authorization", "Basic " + (new BASE64Encoder()).encode(usernameAndPassword.getBytes()));
}
InputStream is = null;
if (conn.getResponseCode() == 200) {
is = conn.getInputStream();
} else {
is = conn.getErrorStream();
InputStreamReader isr = new InputStreamReader(is);
StringWriter sw = new StringWriter();
char[] buf = new char[200];
int read = 0;
while (read != -1) {
read = isr.read(buf);
sw.write(buf);
}
throw new WiseConnectionException("Remote server's response is an error: " + sw.toString());
}
File file = new File(tmpDir, new StringBuffer("Wise").append(IDGenerator.nextVal()).append(".xml").toString());
OutputStream fos = new BufferedOutputStream(new FileOutputStream(file));
IOUtils.copyStream(fos, is);
fos.close();
is.close();
filePath = file.getPath();
} catch (WiseConnectionException wce) {
throw wce;
} catch (Exception e) {
logger.error("Failed to download wsdl from URL : " + wsdlURL);
throw new WiseConnectionException("Wsdl download failed!", e);
}
return filePath;
}
| true |
33 | 13,569,337 | 11,394,767 | public static String getMD5HashFromString(String message) {
String hashword = null;
try {
MessageDigest md5 = MessageDigest.getInstance("MD5");
md5.update(message.getBytes());
BigInteger hash = new BigInteger(1, md5.digest());
hashword = hash.toString(16);
} catch (NoSuchAlgorithmException nsae) {
}
return hashword;
}
| public static byte[] gerarHash(String frase) {
try {
MessageDigest md = MessageDigest.getInstance("SHA-1");
md.update(frase.getBytes());
return md.digest();
} catch (NoSuchAlgorithmException e) {
return null;
}
}
| true |
34 | 254,039 | 16,016,623 | protected void doDownload(S3Bucket bucket, S3Object s3object) throws Exception {
String key = s3object.getKey();
key = trimPrefix(key);
String[] path = key.split("/");
String fileName = path[path.length - 1];
String dirPath = "";
for (int i = 0; i < path.length - 1; i++) {
dirPath += path[i] + "/";
}
File outputDir = new File(downloadFileOutputDir + "/" + dirPath);
if (outputDir.exists() == false) {
outputDir.mkdirs();
}
File outputFile = new File(outputDir, fileName);
long size = s3object.getContentLength();
if (outputFile.exists() && outputFile.length() == size) {
return;
}
long startTime = System.currentTimeMillis();
log.info("Download start.S3 file=" + s3object.getKey() + " local file=" + outputFile.getAbsolutePath());
FileOutputStream fout = null;
S3Object dataObject = null;
try {
fout = new FileOutputStream(outputFile);
dataObject = s3.getObject(bucket, s3object.getKey());
InputStream is = dataObject.getDataInputStream();
IOUtils.copyStream(is, fout);
downloadedFileList.add(key);
long downloadTime = System.currentTimeMillis() - startTime;
log.info("Download complete.Estimete time=" + downloadTime + "ms " + IOUtils.toBPSText(downloadTime, size));
} catch (Exception e) {
log.error("Download fail. s3 file=" + key, e);
outputFile.delete();
throw e;
} finally {
IOUtils.closeNoException(fout);
if (dataObject != null) {
dataObject.closeDataInputStream();
}
}
}
| @Override
protected ModelAndView handleRequestInternal(final HttpServletRequest request, final HttpServletResponse response) throws Exception {
final String filename = ServletRequestUtils.getRequiredStringParameter(request, "id");
final File file = new File(path, filename + ".html");
logger.debug("Getting static content from: " + file.getPath());
final InputStream is = getServletContext().getResourceAsStream(file.getPath());
OutputStream out = null;
if (is != null) {
try {
out = response.getOutputStream();
IOUtils.copy(is, out);
} catch (IOException ioex) {
logger.error(ioex);
} finally {
is.close();
if (out != null) {
out.close();
}
}
}
return null;
}
| true |
35 | 4,147,990 | 1,663,419 | public static void copyFile(File dst, File src, boolean append) throws FileNotFoundException, IOException {
dst.createNewFile();
FileChannel in = new FileInputStream(src).getChannel();
FileChannel out = new FileOutputStream(dst).getChannel();
long startAt = 0;
if (append) startAt = out.size();
in.transferTo(startAt, in.size(), out);
out.close();
in.close();
}
| private static void copyFile(File in, File out) throws IOException {
FileChannel inChannel = new FileInputStream(in).getChannel();
FileChannel outChannel = new FileOutputStream(out).getChannel();
try {
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (IOException e) {
throw e;
} finally {
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
}
}
| true |
36 | 16,603,670 | 12,576,210 | private String generateUniqueIdMD5(String workgroupIdString, String runIdString) {
String passwordUnhashed = workgroupIdString + "-" + runIdString;
MessageDigest m = null;
try {
m = MessageDigest.getInstance("MD5");
} catch (NoSuchAlgorithmException e) {
e.printStackTrace();
}
m.update(passwordUnhashed.getBytes(), 0, passwordUnhashed.length());
String uniqueIdMD5 = new BigInteger(1, m.digest()).toString(16);
return uniqueIdMD5;
}
| public static FTPClient createConnection(String hostname, int port, char[] username, char[] password, String workingDirectory, FileSystemOptions fileSystemOptions) throws FileSystemException {
if (username == null) username = "anonymous".toCharArray();
if (password == null) password = "anonymous".toCharArray();
try {
final FTPClient client = new FTPClient();
String key = FtpFileSystemConfigBuilder.getInstance().getEntryParser(fileSystemOptions);
if (key != null) {
FTPClientConfig config = new FTPClientConfig(key);
String serverLanguageCode = FtpFileSystemConfigBuilder.getInstance().getServerLanguageCode(fileSystemOptions);
if (serverLanguageCode != null) config.setServerLanguageCode(serverLanguageCode);
String defaultDateFormat = FtpFileSystemConfigBuilder.getInstance().getDefaultDateFormat(fileSystemOptions);
if (defaultDateFormat != null) config.setDefaultDateFormatStr(defaultDateFormat);
String recentDateFormat = FtpFileSystemConfigBuilder.getInstance().getRecentDateFormat(fileSystemOptions);
if (recentDateFormat != null) config.setRecentDateFormatStr(recentDateFormat);
String serverTimeZoneId = FtpFileSystemConfigBuilder.getInstance().getServerTimeZoneId(fileSystemOptions);
if (serverTimeZoneId != null) config.setServerTimeZoneId(serverTimeZoneId);
String[] shortMonthNames = FtpFileSystemConfigBuilder.getInstance().getShortMonthNames(fileSystemOptions);
if (shortMonthNames != null) {
StringBuffer shortMonthNamesStr = new StringBuffer(40);
for (int i = 0; i < shortMonthNames.length; i++) {
if (shortMonthNamesStr.length() > 0) shortMonthNamesStr.append("|");
shortMonthNamesStr.append(shortMonthNames[i]);
}
config.setShortMonthNames(shortMonthNamesStr.toString());
}
client.configure(config);
}
FTPFileEntryParserFactory myFactory = FtpFileSystemConfigBuilder.getInstance().getEntryParserFactory(fileSystemOptions);
if (myFactory != null) client.setParserFactory(myFactory);
try {
client.connect(hostname, port);
int reply = client.getReplyCode();
if (!FTPReply.isPositiveCompletion(reply)) throw new FileSystemException("vfs.provider.ftp/connect-rejected.error", hostname);
if (!client.login(UserAuthenticatorUtils.toString(username), UserAuthenticatorUtils.toString(password))) throw new FileSystemException("vfs.provider.ftp/login.error", new Object[] { hostname, UserAuthenticatorUtils.toString(username) }, null);
if (!client.setFileType(FTP.BINARY_FILE_TYPE)) throw new FileSystemException("vfs.provider.ftp/set-binary.error", hostname);
Integer dataTimeout = FtpFileSystemConfigBuilder.getInstance().getDataTimeout(fileSystemOptions);
if (dataTimeout != null) client.setDataTimeout(dataTimeout.intValue());
try {
FtpFileSystemConfigBuilder.getInstance().setHomeDir(fileSystemOptions, client.printWorkingDirectory());
} catch (IOException ex) {
throw new FileSystemException("Error obtaining working directory!");
}
Boolean userDirIsRoot = FtpFileSystemConfigBuilder.getInstance().getUserDirIsRoot(fileSystemOptions);
if (workingDirectory != null && (userDirIsRoot == null || !userDirIsRoot.booleanValue())) if (!client.changeWorkingDirectory(workingDirectory)) throw new FileSystemException("vfs.provider.ftp/change-work-directory.error", workingDirectory);
Boolean passiveMode = FtpFileSystemConfigBuilder.getInstance().getPassiveMode(fileSystemOptions);
if (passiveMode != null && passiveMode.booleanValue()) client.enterLocalPassiveMode();
} catch (final IOException e) {
if (client.isConnected()) client.disconnect();
throw e;
}
return client;
} catch (final Exception exc) {
throw new FileSystemException("vfs.provider.ftp/connect.error", new Object[] { hostname }, exc);
}
}
| false |
37 | 19,825,038 | 9,385,633 | public static byte[] post(String path, Map<String, String> params, String encode) throws Exception {
StringBuilder parambuilder = new StringBuilder("");
if (params != null && !params.isEmpty()) {
for (Map.Entry<String, String> entry : params.entrySet()) {
parambuilder.append(entry.getKey()).append("=").append(URLEncoder.encode(entry.getValue(), encode)).append("&");
}
parambuilder.deleteCharAt(parambuilder.length() - 1);
}
byte[] data = parambuilder.toString().getBytes();
URL url = new URL(path);
HttpURLConnection conn = (HttpURLConnection) url.openConnection();
conn.setDoOutput(true);
conn.setUseCaches(false);
conn.setConnectTimeout(5 * 1000);
conn.setRequestMethod("POST");
conn.setRequestProperty("Accept", "image/gif, image/jpeg, image/pjpeg, image/pjpeg, application/x-shockwave-flash, application/xaml+xml, application/vnd.ms-xpsdocument, application/x-ms-xbap, application/x-ms-application, application/vnd.ms-excel, application/vnd.ms-powerpoint, application/msword, */*");
conn.setRequestProperty("Accept-Language", "zh-CN");
conn.setRequestProperty("User-Agent", "Mozilla/4.0 (compatible; MSIE 8.0; Windows NT 5.2; Trident/4.0; .NET CLR 1.1.4322; .NET CLR 2.0.50727; .NET CLR 3.0.04506.30; .NET CLR 3.0.4506.2152; .NET CLR 3.5.30729)");
conn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded");
conn.setRequestProperty("Content-Length", String.valueOf(data.length));
conn.setRequestProperty("Connection", "Keep-Alive");
DataOutputStream outStream = new DataOutputStream(conn.getOutputStream());
outStream.write(data);
outStream.flush();
outStream.close();
if (conn.getResponseCode() == 200) {
return StreamTool.readInputStream(conn.getInputStream());
}
return null;
}
| protected void setRankOrder() {
this.rankOrder = new int[values.length];
for (int i = 0; i < rankOrder.length; i++) {
rankOrder[i] = i;
assert (!Double.isNaN(values[i]));
}
for (int i = rankOrder.length - 1; i >= 0; i--) {
boolean swapped = false;
for (int j = 0; j < i; j++) if (values[rankOrder[j]] < values[rankOrder[j + 1]]) {
int r = rankOrder[j];
rankOrder[j] = rankOrder[j + 1];
rankOrder[j + 1] = r;
}
}
}
| false |
38 | 810,724 | 22,207,815 | private static void readAndRewrite(File inFile, File outFile) throws IOException {
ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile)));
DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis);
Dataset ds = DcmObjectFactory.getInstance().newDataset();
dcmParser.setDcmHandler(ds.getDcmHandler());
dcmParser.parseDcmFile(null, Tags.PixelData);
PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
System.out.println("reading " + inFile + "...");
pdReader.readPixelData(false);
ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile)));
DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE;
ds.writeDataset(out, dcmEncParam);
ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength());
System.out.println("writing " + outFile + "...");
PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
pdWriter.writePixelData();
out.flush();
out.close();
System.out.println("done!");
}
| public static Checksum checksum(File file, Checksum checksum) throws IOException {
if (file.isDirectory()) {
throw new IllegalArgumentException("Checksums can't be computed on directories");
}
InputStream in = null;
try {
in = new CheckedInputStream(new FileInputStream(file), checksum);
IOUtils.copy(in, new NullOutputStream());
} finally {
IOUtils.closeQuietly(in);
}
return checksum;
}
| true |
39 | 1,643,091 | 23,277,837 | private static void download(String urlString) throws IOException {
URL url = new URL(urlString);
url = handleRedirectUrl(url);
URLConnection cn = url.openConnection();
Utils.setHeader(cn);
long fileLength = cn.getContentLength();
Statics.getInstance().setFileLength(fileLength);
long packageLength = fileLength / THREAD_COUNT;
long leftLength = fileLength % THREAD_COUNT;
String fileName = Utils.decodeURLFileName(url);
RandomAccessFile file = new RandomAccessFile(fileName, "rw");
System.out.println("File: " + fileName + ", Size: " + Utils.calSize(fileLength));
CountDownLatch latch = new CountDownLatch(THREAD_COUNT + 1);
long pos = 0;
for (int i = 0; i < THREAD_COUNT; i++) {
long endPos = pos + packageLength;
if (leftLength > 0) {
endPos++;
leftLength--;
}
new Thread(new DownloadThread(latch, url, file, pos, endPos)).start();
pos = endPos;
}
new Thread(new MoniterThread(latch)).start();
try {
latch.await();
} catch (InterruptedException e) {
e.printStackTrace();
}
}
| private File download(String filename, URL url) {
int size = -1;
int received = 0;
try {
fireDownloadStarted(filename);
File file = createFile(filename);
BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(file));
System.out.println("下载资源：" + filename + ", url=" + url);
// BufferedInputStream bis = new
// BufferedInputStream(url.openStream());
InputStream bis = url.openStream();
byte[] buf = new byte[1024];
int count = 0;
long lastUpdate = 0;
size = bis.available();
while ((count = bis.read(buf)) != -1) {
bos.write(buf, 0, count);
received += count;
long now = System.currentTimeMillis();
if (now - lastUpdate > 500) {
fireDownloadUpdate(filename, size, received);
lastUpdate = now;
}
}
bos.close();
System.out.println("资源下载完毕：" + filename);
fireDownloadCompleted(filename);
return file;
} catch (IOException e) {
System.out.println("下载资源失败：" + filename + ", error=" + e.getMessage());
fireDownloadInterrupted(filename);
if (!(e instanceof FileNotFoundException)) {
e.printStackTrace();
}
}
return null;
}
| false |
40 | 1,214,975 | 21,172,450 | public static void writeToFile(InputStream input, File file, ProgressListener listener, long length) {
OutputStream output = null;
try {
output = new CountingOutputStream(new FileOutputStream(file), listener, length);
IOUtils.copy(input, output);
} catch (IOException e) {
throw new RuntimeException(e);
} finally {
IOUtils.closeQuietly(input);
IOUtils.closeQuietly(output);
}
}
| public static void unzip2(String strZipFile, String folder) throws IOException, ArchiveException {
FileUtil.fileExists(strZipFile, true);
final InputStream is = new FileInputStream(strZipFile);
ArchiveInputStream in = new ArchiveStreamFactory().createArchiveInputStream("zip", is);
ZipArchiveEntry entry = null;
OutputStream out = null;
while ((entry = (ZipArchiveEntry) in.getNextEntry()) != null) {
File zipPath = new File(folder);
File destinationFilePath = new File(zipPath, entry.getName());
destinationFilePath.getParentFile().mkdirs();
if (entry.isDirectory()) {
continue;
} else {
out = new FileOutputStream(new File(folder, entry.getName()));
IOUtils.copy(in, out);
out.close();
}
}
in.close();
}
| true |
41 | 9,070,085 | 17,832,320 | public String getMd5CodeOf16(String str) {
StringBuffer buf = null;
try {
MessageDigest md = MessageDigest.getInstance("MD5");
md.update(str.getBytes());
byte b[] = md.digest();
int i;
buf = new StringBuffer("");
for (int offset = 0; offset < b.length; offset++) {
i = b[offset];
if (i < 0) i += 256;
if (i < 16) buf.append("0");
buf.append(Integer.toHexString(i));
}
} catch (NoSuchAlgorithmException e) {
e.printStackTrace();
} finally {
return buf.toString().substring(8, 24);
}
}
| public void run() {
Pair p = null;
try {
while ((p = queue.pop()) != null) {
GetMethod get = new GetMethod(p.getRemoteUri());
try {
get.setFollowRedirects(true);
get.setRequestHeader("Mariner-Application", "prerenderer");
get.setRequestHeader("Mariner-DeviceName", deviceName);
int iGetResultCode = httpClient.executeMethod(get);
if (iGetResultCode != 200) {
throw new IOException("Got response code " + iGetResultCode + " for a request for " + p.getRemoteUri());
}
InputStream is = get.getResponseBodyAsStream();
File localFile = new File(deviceFile, p.getLocalUri());
localFile.getParentFile().mkdirs();
OutputStream os = new FileOutputStream(localFile);
IOUtils.copy(is, os);
os.close();
} finally {
get.releaseConnection();
}
}
} catch (Exception ex) {
result = ex;
}
}
| false |
42 | 10,445,018 | 19,295,210 | public String MD5(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException {
MessageDigest md;
md = MessageDigest.getInstance("MD5");
byte[] md5hash = new byte[32];
md.update(text.getBytes("iso-8859-1"), 0, text.length());
md5hash = md.digest();
return convertToHex(md5hash);
}
| public static String generateHash(String value) {
MessageDigest md5 = null;
try {
md5 = MessageDigest.getInstance("MD5");
md5.reset();
md5.update(value.getBytes());
} catch (NoSuchAlgorithmException e) {
log.error("Could not find the requested hash method: " + e.getMessage());
}
byte[] result = md5.digest();
StringBuffer hexString = new StringBuffer();
for (int i = 0; i < result.length; i++) {
hexString.append(Integer.toHexString(0xFF & result[i]));
}
return hexString.toString();
}
| true |
43 | 6,988,217 | 701,471 | public void testQueryForBinary() throws InvalidNodeTypeDefException, ParseException, Exception {
JCRNodeSource source = (JCRNodeSource) resolveSource(BASE_URL + "images/photo.png");
assertNotNull(source);
assertEquals(false, source.exists());
OutputStream os = source.getOutputStream();
assertNotNull(os);
String content = "foo is a bar";
os.write(content.getBytes());
os.flush();
os.close();
QueryResultSource qResult = (QueryResultSource) resolveSource(BASE_URL + "images?/*[contains(local-name(), 'photo.png')]");
assertNotNull(qResult);
Collection results = qResult.getChildren();
assertEquals(1, results.size());
Iterator it = results.iterator();
JCRNodeSource rSrc = (JCRNodeSource) it.next();
InputStream rSrcIn = rSrc.getInputStream();
ByteArrayOutputStream actualOut = new ByteArrayOutputStream();
IOUtils.copy(rSrcIn, actualOut);
rSrcIn.close();
assertEquals(content, actualOut.toString());
actualOut.close();
rSrc.delete();
}
| private boolean enregistreToi() {
PrintWriter lEcrivain;
String laDest = "./img_types/" + sonImage;
if (!new File("./img_types").exists()) {
new File("./img_types").mkdirs();
}
try {
FileChannel leFicSource = new FileInputStream(sonFichier).getChannel();
FileChannel leFicDest = new FileOutputStream(laDest).getChannel();
leFicSource.transferTo(0, leFicSource.size(), leFicDest);
leFicSource.close();
leFicDest.close();
lEcrivain = new PrintWriter(new FileWriter(new File("bundll/types.jay"), true));
lEcrivain.println(sonNom);
lEcrivain.println(sonImage);
if (sonOptionRadio1.isSelected()) {
lEcrivain.println("0:?");
}
if (sonOptionRadio2.isSelected()) {
lEcrivain.println("1:" + JOptionPane.showInputDialog(null, "Vous avez choisis de rendre ce terrain difficile � franchir.\nVeuillez en indiquer la raison.", "Demande de pr�cision", JOptionPane.INFORMATION_MESSAGE));
}
if (sonOptionRadio3.isSelected()) {
lEcrivain.println("2:?");
}
lEcrivain.close();
return true;
} catch (Exception lException) {
return false;
}
}
| true |
44 | 4,855,600 | 12,853,333 | public void schema(final Row row, TestResults testResults) throws Exception {
String urlString = row.text(1);
String schemaBase = null;
if (row.cellExists(2)) {
schemaBase = row.text(2);
}
try {
StreamSource schemaSource;
if (urlString.startsWith(CLASS_PREFIX)) {
InputStream schema = XmlValidator.class.getClassLoader().getResourceAsStream(urlString.substring(CLASS_PREFIX.length()));
schemaSource = new StreamSource(schema);
} else {
URL url = new URL(urlString);
URLConnection urlConnection = url.openConnection();
urlConnection.connect();
InputStream inputStream = urlConnection.getInputStream();
schemaSource = new StreamSource(inputStream);
}
SchemaFactory factory = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI);
if (schemaBase != null) {
DefaultLSResourceResolver resolver = new DefaultLSResourceResolver(schemaBase);
factory.setResourceResolver(resolver);
}
factory.newSchema(new URL(urlString));
Validator validator = factory.newSchema(schemaSource).newValidator();
StreamSource source = new StreamSource(new StringReader(xml));
validator.validate(source);
row.pass(testResults);
} catch (SAXException e) {
Loggers.SERVICE_LOG.warn("schema error", e);
throw new FitFailureException(e.getMessage());
} catch (IOException e) {
Loggers.SERVICE_LOG.warn("schema error", e);
throw new FitFailureException(e.getMessage());
}
}
| public static String getURLContent(String href) throws BuildException {
URL url = null;
String content;
try {
URL context = new URL("file:" + System.getProperty("user.dir") + "/");
url = new URL(context, href);
InputStream is = url.openStream();
InputStreamReader isr = new InputStreamReader(is);
StringBuffer stringBuffer = new StringBuffer();
char[] buffer = new char[1024];
int len;
while ((len = isr.read(buffer, 0, 1024)) > 0) stringBuffer.append(buffer, 0, len);
content = stringBuffer.toString();
isr.close();
} catch (Exception ex) {
throw new BuildException("Cannot get content of URL " + href + ": " + ex);
}
return content;
}
| false |
45 | 1,989,226 | 11,961,013 | public void actualizar() throws SQLException, ClassNotFoundException, Exception {
Connection conn = null;
PreparedStatement ms = null;
registroActualizado = false;
try {
conn = ToolsBD.getConn();
conn.setAutoCommit(false);
Date fechaSystem = new Date();
DateFormat aaaammdd = new SimpleDateFormat("yyyyMMdd");
int fzafsis = Integer.parseInt(aaaammdd.format(fechaSystem));
DateFormat hhmmss = new SimpleDateFormat("HHmmss");
DateFormat sss = new SimpleDateFormat("S");
String ss = sss.format(fechaSystem);
if (ss.length() > 2) {
ss = ss.substring(0, 2);
}
int fzahsis = Integer.parseInt(hhmmss.format(fechaSystem) + ss);
ms = conn.prepareStatement(SENTENCIA_UPDATE);
if (fechaOficio != null && !fechaOficio.equals("")) {
if (fechaOficio.matches("\\d{8}")) {
ms.setInt(1, Integer.parseInt(fechaOficio));
} else {
int fzafent = 0;
try {
fechaTest = dateF.parse(fechaOficio);
Calendar cal = Calendar.getInstance();
cal.setTime(fechaTest);
DateFormat date1 = new SimpleDateFormat("yyyyMMdd");
fzafent = Integer.parseInt(date1.format(fechaTest));
} catch (Exception e) {
}
ms.setInt(1, fzafent);
}
} else {
ms.setInt(1, 0);
}
ms.setString(2, descripcion);
ms.setInt(3, Integer.parseInt(anoSalida));
ms.setInt(4, Integer.parseInt(oficinaSalida));
ms.setInt(5, Integer.parseInt(numeroSalida));
ms.setString(6, nulo);
ms.setString(7, motivosNulo);
ms.setString(8, usuarioNulo);
if (fechaNulo != null && !fechaNulo.equals("")) {
int fzafent = 0;
try {
fechaTest = dateF.parse(fechaNulo);
Calendar cal = Calendar.getInstance();
cal.setTime(fechaTest);
DateFormat date1 = new SimpleDateFormat("yyyyMMdd");
fzafent = Integer.parseInt(date1.format(fechaTest));
} catch (Exception e) {
}
ms.setInt(9, fzafent);
} else {
ms.setInt(9, 0);
}
if (fechaEntrada != null && !fechaEntrada.equals("")) {
int fzafent = 0;
try {
fechaTest = dateF.parse(fechaEntrada);
Calendar cal = Calendar.getInstance();
cal.setTime(fechaTest);
DateFormat date1 = new SimpleDateFormat("yyyyMMdd");
fzafent = Integer.parseInt(date1.format(fechaTest));
} catch (Exception e) {
}
ms.setInt(10, fzafent);
} else {
ms.setInt(10, 0);
}
ms.setString(11, descartadoEntrada);
ms.setString(12, usuarioEntrada);
ms.setString(13, motivosDescarteEntrada);
ms.setInt(14, anoEntrada != null ? Integer.parseInt(anoEntrada) : 0);
ms.setInt(15, oficinaEntrada != null ? Integer.parseInt(oficinaEntrada) : 0);
ms.setInt(16, numeroEntrada != null ? Integer.parseInt(numeroEntrada) : 0);
ms.setInt(17, anoOficio != null ? Integer.parseInt(anoOficio) : 0);
ms.setInt(18, oficinaOficio != null ? Integer.parseInt(oficinaOficio) : 0);
ms.setInt(19, numeroOficio != null ? Integer.parseInt(numeroOficio) : 0);
int afectados = ms.executeUpdate();
if (afectados > 0) {
registroActualizado = true;
} else {
registroActualizado = false;
}
conn.commit();
} catch (Exception ex) {
System.out.println("Error inesperat, no s'ha desat el registre: " + ex.getMessage());
ex.printStackTrace();
registroActualizado = false;
errores.put("", "Error inesperat, no s'ha desat el registre" + ": " + ex.getClass() + "->" + ex.getMessage());
try {
if (conn != null) conn.rollback();
} catch (SQLException sqle) {
throw new RemoteException("S'ha produït un error i no s'han pogut tornar enrere els canvis efectuats", sqle);
}
throw new RemoteException("Error inesperat, no s'ha actualitzat la taula de gestió dels ofici de remissió.", ex);
} finally {
ToolsBD.closeConn(conn, ms, null);
}
}
| public static Builder fromURL(URL url) {
try {
InputStream in = null;
try {
in = url.openStream();
ByteArrayOutputStream baos = new ByteArrayOutputStream();
int read = -1;
byte[] buf = new byte[4096];
while ((read = in.read(buf)) >= 0) {
if (read > 0) {
baos.write(buf, 0, read);
}
}
StreamBuilder b = (StreamBuilder) fromMemory(baos.toByteArray());
try {
b.setSystemId(url.toURI().toString());
} catch (URISyntaxException use) {
b.setSystemId(url.toString());
}
return b;
} finally {
if (in != null) {
in.close();
}
}
} catch (IOException ex) {
throw new XMLUnitException(ex);
}
}
| false |
46 | 15,596,950 | 14,782,656 | private static ImageIcon tryLoadImageIconFromResource(String filename, String path, int width, int height) {
ImageIcon icon = null;
try {
URL url = cl.getResource(path + pathSeparator + fixFilename(filename));
if (url != null && url.openStream() != null) {
icon = new ImageIcon(url);
}
} catch (Exception e) {
}
if (icon == null) {
return null;
}
if ((icon.getIconWidth() == width) && (icon.getIconHeight() == height)) {
return icon;
} else {
return new ImageIcon(icon.getImage().getScaledInstance(width, height, java.awt.Image.SCALE_SMOOTH));
}
}
| private static Long statusSWGCraftTime() {
long current = System.currentTimeMillis() / 1000L;
if (current < (previousStatusCheck + SWGCraft.STATUS_CHECK_DELAY)) return previousStatusTime;
URL url = null;
try {
synchronized (previousStatusTime) {
if (current >= previousStatusCheck + SWGCraft.STATUS_CHECK_DELAY) {
url = SWGCraft.getStatusTextURL();
String statusTime = ZReader.read(url.openStream());
previousStatusTime = Long.valueOf(statusTime);
previousStatusCheck = current;
}
return previousStatusTime;
}
} catch (UnknownHostException e) {
SWGCraft.showUnknownHostDialog(url, e);
} catch (Throwable e) {
SWGAide.printDebug("cmgr", 1, "SWGResourceManager:statusSWGCraftTime:", e.toString());
}
return Long.valueOf(0);
}
| false |
47 | 249,428 | 6,166,363 | public boolean onStart() {
log("Starting up, this may take a minute...");
gui = new ApeAtollGUI();
gui.setVisible(true);
while (waitGUI) {
sleep(100);
}
URLConnection url = null;
BufferedReader in = null;
BufferedWriter out = null;
if (checkUpdates) {
try {
url = new URL("http://www.voltrex.be/rsbot/VoltrexApeAtollVERSION.txt").openConnection();
in = new BufferedReader(new InputStreamReader(url.getInputStream()));
if (Double.parseDouble(in.readLine()) > properties.version()) {
if (JOptionPane.showConfirmDialog(null, "Update found. Do you want to update?") == 0) {
JOptionPane.showMessageDialog(null, "Please choose 'VoltrexApeAtoll.java' in your scripts/sources folder.");
JFileChooser fc = new JFileChooser();
if (fc.showOpenDialog(null) == JFileChooser.APPROVE_OPTION) {
url = new URL("http://www.voltrex.be/rsbot/VoltrexApeAtoll.java").openConnection();
in = new BufferedReader(new InputStreamReader(url.getInputStream()));
out = new BufferedWriter(new FileWriter(fc.getSelectedFile().getPath()));
String inp;
while ((inp = in.readLine()) != null) {
out.write(inp);
out.newLine();
out.flush();
}
log("Script successfully downloaded. Please recompile.");
return false;
} else log("Update canceled");
} else log("Update canceled");
} else log("You have the latest version.");
if (in != null) in.close();
if (out != null) out.close();
} catch (IOException e) {
log("Problem getting version. Please report this bug!");
}
}
try {
BKG = ImageIO.read(new URL("http://i54.tinypic.com/2egcfaw.jpg"));
} catch (final java.io.IOException e) {
e.printStackTrace();
}
try {
final URL cursorURL = new URL("http://imgur.com/i7nMG.png");
final URL cursor80URL = new URL("http://imgur.com/8k9op.png");
normal = ImageIO.read(cursorURL);
clicked = ImageIO.read(cursor80URL);
} catch (MalformedURLException e) {
log.info("Unable to buffer cursor.");
} catch (IOException e) {
log.info("Unable to open cursor image.");
}
scriptStartTime = System.currentTimeMillis();
mouse.setSpeed(MouseSpeed);
camera.setPitch(true);
log("You are using Voltrex Ape Atoll agility course.");
return true;
}
| private static byte[] gerarHash(String frase) {
try {
MessageDigest md = MessageDigest.getInstance("MD5");
md.update(frase.getBytes());
return md.digest();
} catch (Exception e) {
return null;
}
}
| false |
48 | 6,751,999 | 18,761,618 | public static void main(String[] args) throws Exception {
TripleDES tdes = new TripleDES();
StreamBlockReader reader = new StreamBlockReader(new FileInputStream("D:\\test.txt"));
StreamBlockWriter writer = new StreamBlockWriter(new FileOutputStream("D:\\testTDESENC.txt"));
SingleKey key = new SingleKey(new Block(128), "");
key = new SingleKey(new Block("01011101110000101001100111001011101000001110111101001001101101101101100000011101100100110000101100001110000001111101001101001101"), "");
Mode mode = new ECBTripleDESMode(tdes);
tdes.encrypt(reader, writer, key, mode);
}
| private FileInputStream getPackageStream(String archivePath) throws IOException, PackageManagerException {
final int lastSlashInName = filename.lastIndexOf("/");
final String newFileName = filename.substring(lastSlashInName);
File packageFile = new File((new StringBuilder()).append(archivePath).append(newFileName).toString());
if (null != packageFile) return new FileInputStream(packageFile);
if (null != packageURL) {
final InputStream urlStream = new ConnectToServer(null).getInputStream(packageURL);
packageFile = new File((new StringBuilder()).append(getName()).append(".deb").toString());
final OutputStream fileStream = new FileOutputStream(packageFile);
final byte buffer[] = new byte[10240];
for (int read = 0; (read = urlStream.read(buffer)) > 0; ) fileStream.write(buffer, 0, read);
urlStream.close();
fileStream.close();
return new FileInputStream(packageFile);
} else {
final String errorMessage = PreferenceStoreHolder.getPreferenceStoreByName("Screen").getPreferenceAsString("package.getPackageStream.packageURLIsNull", "No entry found for package.getPackageStream.packageURLIsNull");
if (pm != null) {
pm.addWarning(errorMessage);
logger.error(errorMessage);
} else logger.error(errorMessage);
throw new FileNotFoundException();
}
}
| true |
49 | 19,193,813 | 18,568,751 | public void writeTo(File f) throws IOException {
if (state != STATE_OK) throw new IllegalStateException("Upload failed");
if (tempLocation == null) throw new IllegalStateException("File already saved");
if (f.isDirectory()) f = new File(f, filename);
FileInputStream fis = new FileInputStream(tempLocation);
FileOutputStream fos = new FileOutputStream(f);
byte[] buf = new byte[BUFFER_SIZE];
try {
int i = 0;
while ((i = fis.read(buf)) != -1) fos.write(buf, 0, i);
} finally {
deleteTemporaryFile();
fis.close();
fos.close();
}
}
| public static Boolean decompress(File source, File destination) {
FileOutputStream outputStream;
ZipInputStream inputStream;
try {
outputStream = null;
inputStream = new ZipInputStream(new FileInputStream(source));
int read;
byte buffer[] = new byte[BUFFER_SIZE];
ZipEntry zipEntry;
while ((zipEntry = inputStream.getNextEntry()) != null) {
if (zipEntry.isDirectory()) new File(destination, zipEntry.getName()).mkdirs(); else {
File fileEntry = new File(destination, zipEntry.getName());
fileEntry.getParentFile().mkdirs();
outputStream = new FileOutputStream(fileEntry);
while ((read = inputStream.read(buffer, 0, BUFFER_SIZE)) != -1) {
outputStream.write(buffer, 0, read);
}
outputStream.flush();
outputStream.close();
}
}
inputStream.close();
} catch (Exception oException) {
return false;
}
return true;
}
| true |
50 | 418,257 | 21,900,384 | public BufferedWriter createOutputStream(String inFile, String outFile) throws IOException {
int k_blockSize = 1024;
int byteCount;
char[] buf = new char[k_blockSize];
File ofp = new File(outFile);
ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(ofp));
zos.setMethod(ZipOutputStream.DEFLATED);
OutputStreamWriter osw = new OutputStreamWriter(zos, "ISO-8859-1");
BufferedWriter bw = new BufferedWriter(osw);
ZipEntry zot = null;
File ifp = new File(inFile);
ZipInputStream zis = new ZipInputStream(new FileInputStream(ifp));
InputStreamReader isr = new InputStreamReader(zis, "ISO-8859-1");
BufferedReader br = new BufferedReader(isr);
ZipEntry zit = null;
while ((zit = zis.getNextEntry()) != null) {
if (zit.getName().equals("content.xml")) {
continue;
}
zot = new ZipEntry(zit.getName());
zos.putNextEntry(zot);
while ((byteCount = br.read(buf, 0, k_blockSize)) >= 0) bw.write(buf, 0, byteCount);
bw.flush();
zos.closeEntry();
}
zos.putNextEntry(new ZipEntry("content.xml"));
bw.flush();
osw = new OutputStreamWriter(zos, "UTF8");
bw = new BufferedWriter(osw);
return bw;
}
| @Override
protected ActionForward executeAction(ActionMapping mapping, ActionForm form, User user, HttpServletRequest request, HttpServletResponse response) throws Exception {
long resourceId = ServletRequestUtils.getLongParameter(request, "resourceId", 0L);
String attributeIdentifier = request.getParameter("identifier");
if (resourceId != 0L && StringUtils.hasText(attributeIdentifier)) {
try {
BinaryAttribute binaryAttribute = resourceManager.readAttribute(resourceId, attributeIdentifier, user);
response.addHeader("Content-Disposition", "attachment; filename=\"" + binaryAttribute.getName() + '"');
String contentType = binaryAttribute.getContentType();
if (contentType != null) {
if ("application/x-zip-compressed".equalsIgnoreCase(contentType)) {
response.setContentType("application/octet-stream");
} else {
response.setContentType(contentType);
}
} else {
response.setContentType("application/octet-stream");
}
IOUtils.copy(binaryAttribute.getInputStream(), response.getOutputStream());
return null;
} catch (DataRetrievalFailureException e) {
addGlobalError(request, "errors.notFound");
} catch (Exception e) {
addGlobalError(request, e);
}
}
return mapping.getInputForward();
}
| true |
51 | 10,793,825 | 2,247,987 | public String getRec(String attribute, String url) {
String arr[] = new String[3];
String[] subarr = new String[6];
String mdPrefix = "";
String mdPrefixValue = "";
String iden = "";
String idenValue = "";
String s = "";
String arguments = attribute.substring(attribute.indexOf("?") + 1);
System.out.println("attributes" + arguments);
java.util.StringTokenizer st = new java.util.StringTokenizer(arguments, "&");
int i = 0;
int j = 0;
int count = 0;
int argCount = 0;
java.util.Vector v1 = new java.util.Vector(1, 1);
java.util.Vector v901 = new java.util.Vector(1, 1);
java.util.Vector v902 = new java.util.Vector(1, 1);
java.util.Vector v903 = new java.util.Vector(1, 1);
java.util.Vector v904 = new java.util.Vector(1, 1);
java.util.Vector v905 = new java.util.Vector(1, 1);
java.util.Vector v906 = new java.util.Vector(1, 1);
java.util.Vector v907 = new java.util.Vector(1, 1);
java.util.Vector v908 = new java.util.Vector(1, 1);
java.util.Vector v3 = new java.util.Vector(1, 1);
java.util.Vector vData = new java.util.Vector(1, 1);
java.util.Vector vSet = new java.util.Vector(1, 1);
java.util.Vector v856 = new java.util.Vector(1, 1);
Resdate dt = new Resdate();
try {
while (st.hasMoreElements()) {
arr[i] = st.nextElement().toString();
java.util.StringTokenizer subSt = new java.util.StringTokenizer(arr[i], "=");
while (subSt.hasMoreElements()) {
subarr[j] = subSt.nextElement().toString();
System.out.println(" arga are... " + subarr[j]);
j++;
}
i++;
count++;
}
} catch (Exception e) {
e.printStackTrace();
}
Namespace oains = Namespace.getNamespace("http://www.openarchives.org/OAI/2.0/");
Element root = new Element("OAI-PMH", oains);
Namespace xsi = Namespace.getNamespace("xsi", "http://www.w3.org/2001/XMLSchema-instance");
Attribute schemaLocation = new Attribute("schemaLocation", "http://www.openarchives.org/OAI/2.0/ http://www.openarchives.org/OAI/2.0/OAI-PMH.xsd", xsi);
root.setAttribute(schemaLocation);
root.addNamespaceDeclaration(xsi);
Document doc = new Document(root);
Element responseDate = new Element("responseDate", oains);
root.addContent(responseDate);
responseDate.setText(dt.getDate());
Element request = new Element("request", oains);
request.setAttribute("verb", "GetRecord");
int idenCount = 0, mdfCount = 0;
for (int k = 2; k < j; k += 2) {
System.out.println(" arg key " + subarr[k]);
if (subarr[k].equals("metadataPrefix")) {
mdPrefix = "metadataPrefix";
mdfCount++;
mdPrefixValue = subarr[k + 1];
request.setAttribute(mdPrefix, mdPrefixValue);
System.out.println(subarr[k] + "=");
System.out.println(mdPrefixValue);
argCount++;
} else if (subarr[k].equals("identifier")) {
iden = "identifier";
idenCount++;
idenValue = subarr[k + 1];
request.setAttribute(iden, idenValue);
System.out.println(subarr[k] + "=");
System.out.println(idenValue);
argCount++;
}
}
request.setText(url);
root.addContent(request);
System.out.println("count" + argCount);
if (mdfCount == 1 && idenCount == 1 && (mdPrefixValue.equals("marc21") || mdPrefixValue.equals("oai_dc") || mdPrefixValue.equals("mods"))) {
try {
v1 = ((ejb.bprocess.OAIPMH.ListGetRecordsHome) ejb.bprocess.util.HomeFactory.getInstance().getRemoteHome("ListGetRecords")).create().getRecord(idenValue, mdPrefixValue);
} catch (Exception ex) {
ex.printStackTrace();
}
if (v1.size() == 0) {
System.out.println("vector size is empty");
Errors e1 = new Errors();
Element errorXML = e1.describeError(3, attribute, url, "GetRecord");
root.addContent(errorXML);
} else {
Element GetRecord = new Element("GetRecord", oains);
root.addContent(GetRecord);
Element Record = new Element("record", oains);
Element metadata = new Element("metadata", oains);
Element head = new Element("header", oains);
System.out.println("size i s " + v1.size());
for (int v = 0; v < v1.size(); v = v + 13) {
vSet = (java.util.Vector) v1.elementAt(v + 1);
Element ident = new Element("identifier", oains);
ident.setText(idenValue);
head.addContent(ident);
Element dates = new Element("datestamp", oains);
dates.setText(v1.elementAt(v).toString().substring(0, 10));
head.addContent(dates);
for (int t = 0; t < vSet.size(); t++) {
Element setSpec = new Element("setSpec", oains);
System.out.println("set elem" + vSet.elementAt(t).toString());
setSpec.setText(vSet.elementAt(t).toString());
head.addContent(setSpec);
}
Element marcroot = new Element("record", "marc", "http://www.loc.gov/MARC21/slim");
Namespace xsimarc = Namespace.getNamespace("xsi", "http://www.w3.org/2001/XMLSchema-instance");
marcroot.addNamespaceDeclaration(xsimarc);
Attribute schemaLocationmarc = new Attribute("schemaLocation", "http://www.loc.gov/MARC21/slim http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd", xsimarc);
marcroot.setAttribute(schemaLocationmarc);
marcroot.setAttribute("type", "Bibliographic");
v3 = (java.util.Vector) v1.elementAt(v + 10);
java.util.Vector vL = (java.util.Vector) v3.elementAt(0);
org.jdom.Element lead = new org.jdom.Element("leader", "marc", "http://www.loc.gov/MARC21/slim");
lead.setText(vL.elementAt(0).toString());
marcroot.addContent(lead);
java.util.Vector vC = (java.util.Vector) v3.elementAt(1);
for (int u = 0; u < vC.size(); u = u + 2) {
org.jdom.Element ct = new org.jdom.Element("controlfield", "marc", "http://www.loc.gov/MARC21/slim");
ct.setAttribute("tag", vC.elementAt(u).toString());
ct.setText(vC.elementAt(u + 1).toString());
marcroot.addContent(ct);
}
v901 = (java.util.Vector) v1.elementAt(v + 2);
for (int k = 0; k < v901.size(); k++) {
org.jdom.Element datafield = new org.jdom.Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield.setAttribute("tag", "901");
datafield.setAttribute("ind1", "0");
datafield.setAttribute("ind2", "0");
java.util.Vector vecSub = new java.util.Vector(1, 1);
vecSub = (java.util.Vector) v901.elementAt(k);
System.out.println("in getrec sub ");
System.out.println("sub 901 size" + vecSub.size());
for (int k1 = 0; k1 < vecSub.size(); k1 = k1 + 2) {
org.jdom.Element subfield = new org.jdom.Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield.setAttribute("code", vecSub.elementAt(k1).toString());
subfield.setText(vecSub.elementAt(k1 + 1).toString());
datafield.addContent(subfield);
}
marcroot.addContent(datafield);
}
v902 = (java.util.Vector) v1.elementAt(v + 3);
for (int l = 0; l < v902.size(); l++) {
Element datafield1 = new Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield1.setAttribute("tag", "902");
datafield1.setAttribute("ind1", "0");
datafield1.setAttribute("ind2", "0");
java.util.Vector vecSub1 = new java.util.Vector(1, 1);
vecSub1 = (java.util.Vector) v902.elementAt(l);
for (int b = 0; b < vecSub1.size(); b = b + 2) {
Element subfield = new Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield.setAttribute("code", vecSub1.elementAt(b).toString());
subfield.setText(vecSub1.elementAt(b + 1).toString());
datafield1.addContent(subfield);
}
marcroot.addContent(datafield1);
}
v903 = (java.util.Vector) v1.elementAt(v + 4);
Element datafield1 = new Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield1.setAttribute("tag", "903");
datafield1.setAttribute("ind1", "0");
datafield1.setAttribute("ind2", "0");
for (int l = 0; l < v903.size(); l++) {
Element subfield = new Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield.setAttribute("code", "a");
subfield.setText(v903.elementAt(l).toString());
datafield1.addContent(subfield);
}
marcroot.addContent(datafield1);
v904 = (java.util.Vector) v1.elementAt(v + 5);
Element datafield21 = new Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield21.setAttribute("tag", "904");
datafield21.setAttribute("ind1", "0");
datafield21.setAttribute("ind2", "0");
for (int l = 0; l < v904.size(); l++) {
Element subfield = new Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield.setAttribute("code", "a");
subfield.setText(v904.elementAt(l).toString());
datafield21.addContent(subfield);
}
marcroot.addContent(datafield21);
v905 = (java.util.Vector) v1.elementAt(v + 6);
Element datafield31 = new Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield31.setAttribute("tag", "905");
datafield31.setAttribute("ind1", "0");
datafield31.setAttribute("ind2", "0");
for (int l = 0; l < v905.size(); l++) {
Element subfield = new Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield.setAttribute("code", "a");
subfield.setText(v905.elementAt(l).toString());
datafield31.addContent(subfield);
}
marcroot.addContent(datafield31);
v906 = (java.util.Vector) v1.elementAt(v + 7);
Element datafield4 = new Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield4.setAttribute("tag", "906");
datafield4.setAttribute("ind1", "0");
datafield4.setAttribute("ind2", "0");
for (int l = 0; l < v906.size(); l++) {
Element subfield = new Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield.setAttribute("code", "a");
subfield.setText(v906.elementAt(l).toString());
datafield4.addContent(subfield);
}
marcroot.addContent(datafield4);
v907 = (java.util.Vector) v1.elementAt(v + 8);
for (int l = 0; l < v907.size(); l++) {
Element datafield5 = new Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield5.setAttribute("tag", "907");
datafield5.setAttribute("ind1", "0");
datafield5.setAttribute("ind2", "0");
java.util.Vector vecSub1 = new java.util.Vector(1, 1);
vecSub1 = (java.util.Vector) v907.elementAt(l);
for (int b = 0; b < vecSub1.size(); b = b + 2) {
Element subfield = new Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield.setAttribute("code", vecSub1.elementAt(b).toString());
subfield.setText(vecSub1.elementAt(b + 1).toString());
datafield5.addContent(subfield);
}
marcroot.addContent(datafield5);
}
v908 = (java.util.Vector) v1.elementAt(v + 9);
for (int l = 0; l < v908.size(); l++) {
Element datafield6 = new Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield6.setAttribute("tag", "908");
datafield6.setAttribute("ind1", "0");
datafield6.setAttribute("ind2", "0");
java.util.Vector vecSub1 = new java.util.Vector(1, 1);
vecSub1 = (java.util.Vector) v908.elementAt(l);
for (int b = 0; b < vecSub1.size(); b = b + 2) {
Element subfield = new Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield.setAttribute("code", vecSub1.elementAt(b).toString());
subfield.setText(vecSub1.elementAt(b + 1).toString());
datafield6.addContent(subfield);
}
marcroot.addContent(datafield6);
}
vData = (java.util.Vector) v1.elementAt(v + 11);
for (int m = 0; m < vData.size(); m = m + 2) {
Element datafield2 = new Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield2.setAttribute("tag", vData.elementAt(m).toString());
datafield2.setAttribute("ind1", "0");
datafield2.setAttribute("ind2", "0");
java.util.Vector vSub = new java.util.Vector(1, 1);
vSub = (java.util.Vector) vData.elementAt(m + 1);
for (int n = 0; n < vSub.size(); n = n + 2) {
Element subfield = new Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield.setAttribute("code", vSub.elementAt(n).toString());
subfield.setText(vSub.elementAt(n + 1).toString());
datafield2.addContent(subfield);
}
marcroot.addContent(datafield2);
}
v856 = (java.util.Vector) v1.elementAt(v + 12);
for (int l = 0; l < v856.size(); l = l + 2) {
Element datafield3 = new Element("datafield", "marc", "http://www.loc.gov/MARC21/slim");
datafield3.setAttribute("tag", "856");
datafield3.setAttribute("ind1", "0");
datafield3.setAttribute("ind2", "0");
Element subfield1 = new Element("subfield", "marc", "http://www.loc.gov/MARC21/slim");
subfield1.setAttribute("code", v856.elementAt(l).toString());
subfield1.setText(v856.elementAt(l + 1).toString());
datafield3.addContent(subfield1);
marcroot.addContent(datafield3);
}
if (mdPrefixValue.equals("oai_dc")) {
try {
Transformer transformer = TransformerFactory.newInstance().newTransformer(new StreamSource(ejb.bprocess.util.NewGenLibRoot.getRoot() + java.io.File.separator + "StyleSheets" + java.io.File.separator + "MARC21slim2OAIDC.xsl"));
Document docmarc = new Document(marcroot);
JDOMSource in = new JDOMSource(docmarc);
JDOMResult out = new JDOMResult();
transformer.transform(in, out);
Document doc2 = out.getDocument();
org.jdom.output.XMLOutputter out1 = new org.jdom.output.XMLOutputter();
out1.setTextTrim(true);
out1.setIndent(" ");
out1.setNewlines(true);
String s1 = out1.outputString(doc2);
System.out.println("dublin core is" + s1);
Element dcroot1 = doc2.getRootElement();
Namespace xsi1 = Namespace.getNamespace("xsi", "http://www.w3.org/2001/XMLSchema-instance");
Namespace oainsdc = Namespace.getNamespace("http://www.openarchives.org/OAI/2.0/oai_dc/");
Element dcroot = new Element("dc", "oai_dc", "http://www.openarchives.org/OAI/2.0/oai_dc/");
Namespace dcns = Namespace.getNamespace("dc", "http://purl.org/dc/elements/1.1/");
dcroot.addNamespaceDeclaration(dcns);
dcroot.addNamespaceDeclaration(xsi1);
Attribute schemaLocationdc = new Attribute("schemaLocation", "http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd", xsi1);
dcroot.setAttribute(schemaLocationdc);
java.util.List dcList = doc2.getRootElement().getChildren();
for (int g = 0; g < dcList.size(); g++) {
Element dcElem1 = (org.jdom.Element) dcList.get(g);
Element dcElem = new Element(dcElem1.getName(), "dc", "http://purl.org/dc/elements/1.1/");
dcElem.setText(dcElem1.getText());
dcroot.addContent(dcElem);
}
metadata.addContent(dcroot);
} catch (TransformerException e) {
e.printStackTrace();
}
} else if (mdPrefixValue.equals("mods")) {
try {
java.util.Properties systemSettings = System.getProperties();
java.util.prefs.Preferences prefs = java.util.prefs.Preferences.systemRoot();
if (prefs.getBoolean("useproxy", false)) {
systemSettings.put("proxySet", "true");
systemSettings.put("proxyHost", prefs.get("proxyservername", ""));
systemSettings.put("proxyPort", prefs.get("proxyport", ""));
systemSettings.put("http.proxyHost", prefs.get("proxyservername", ""));
systemSettings.put("http.proxyPort", prefs.get("proxyport", ""));
}
String urltext = "";
Transformer transformer = null;
urltext = "http://www.loc.gov/standards/mods/v3/MARC21slim2MODS3.xsl";
java.net.URL url1 = new java.net.URL(urltext);
java.net.URLConnection urlconn = url1.openConnection();
urlconn.setDoInput(true);
transformer = TransformerFactory.newInstance().newTransformer(new StreamSource(urlconn.getInputStream()));
Document docmarc = new Document(marcroot);
JDOMSource in = new JDOMSource(docmarc);
JDOMResult out = new JDOMResult();
transformer.transform(in, out);
Document doc2 = out.getDocument();
org.jdom.output.XMLOutputter out1 = new org.jdom.output.XMLOutputter();
out1.setTextTrim(true);
out1.setIndent(" ");
out1.setNewlines(true);
String s1 = out1.outputString(doc2);
Namespace xsi1 = Namespace.getNamespace("xlink", "http://www.w3.org/1999/xlink");
Namespace oainsdc = Namespace.getNamespace("http://www.openarchives.org/OAI/2.0/oai_dc/");
Element mroot = new Element("mods", "http://www.loc.gov/mods/v3");
Namespace dcns = Namespace.getNamespace("http://www.loc.gov/mods/v3");
mroot.addNamespaceDeclaration(xsi1);
Attribute schemaLocationdc = new Attribute("schemaLocation", "http://www.loc.gov/mods/v3 http://www.loc.gov/standards/mods/v3/mods-3-0.xsd", xsi1);
mroot.setAttribute(schemaLocationdc);
java.util.List dcList = doc2.getRootElement().getChildren();
for (int g = 0; g < dcList.size(); g++) {
Element mElem1 = (org.jdom.Element) dcList.get(g);
Element mElem = new Element(mElem1.getName(), "http://www.loc.gov/mods/v3");
if (mElem1.hasChildren()) {
java.util.List mList1 = mElem1.getChildren();
for (int f = 0; f < mList1.size(); f++) {
Element mElem2 = (org.jdom.Element) mList1.get(f);
Element mElem3 = new Element(mElem2.getName(), "http://www.loc.gov/mods/v3");
if (mElem2.hasChildren()) {
java.util.List mList2 = mElem2.getChildren();
for (int h = 0; h < mList2.size(); h++) {
Element mElem4 = (org.jdom.Element) mList1.get(h);
Element mElem5 = new Element(mElem4.getName(), "http://www.loc.gov/mods/v3");
mElem5.setText(mElem4.getText());
mElem3.addContent(mElem5);
}
}
if (mElem2.hasChildren() == false) {
mElem3.setText(mElem2.getText());
}
mElem.addContent(mElem3);
}
}
if (mElem1.hasChildren() == false) {
mElem.setText(mElem1.getText());
}
mroot.addContent(mElem);
}
metadata.addContent(mroot);
} catch (Exception e) {
e.printStackTrace();
}
}
if (mdPrefixValue.equals("marc21")) {
metadata.addContent(marcroot);
} else if (mdPrefixValue.equals("oai_dc")) {
}
}
Record.addContent(head);
Record.addContent(metadata);
GetRecord.addContent(Record);
}
} else if (argCount <= 2) {
if (idenCount < 1 && mdfCount < 1) {
Errors e1 = new Errors();
Element errorXML = e1.describeError(2, "missing arguments: identifier,metadataprefix", url, "GetRecord");
root.addContent(errorXML);
} else if (idenCount < 1) {
Errors e1 = new Errors();
Element errorXML = e1.describeError(2, "missing argument: identifier", url, "GetRecord");
root.addContent(errorXML);
} else if (mdfCount < 1) {
Errors e1 = new Errors();
Element errorXML = e1.describeError(2, "missing argument: metadataprefix", url, "GetRecord");
root.addContent(errorXML);
} else if (argCount > 2) {
Errors e1 = new Errors();
Element errorXML = e1.describeError(2, "more number of arguments", url, "GetRecord");
root.addContent(errorXML);
} else {
System.out.println("no format");
Errors e1 = new Errors();
Element errorXML = e1.describeError(6, "", url, "GetRecord");
root.addContent(errorXML);
}
}
XMLOutputter out = new XMLOutputter();
out.setIndent(" ");
out.setNewlines(true);
s = out.outputString(doc);
return s;
}
| public static void main(String argv[]) {
Matrix A, B, C, Z, O, I, R, S, X, SUB, M, T, SQ, DEF, SOL;
int errorCount = 0;
int warningCount = 0;
double tmp, s;
double[] columnwise = { 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12. };
double[] rowwise = { 1., 4., 7., 10., 2., 5., 8., 11., 3., 6., 9., 12. };
double[][] avals = { { 1., 4., 7., 10. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } };
double[][] rankdef = avals;
double[][] tvals = { { 1., 2., 3. }, { 4., 5., 6. }, { 7., 8., 9. }, { 10., 11., 12. } };
double[][] subavals = { { 5., 8., 11. }, { 6., 9., 12. } };
double[][] rvals = { { 1., 4., 7. }, { 2., 5., 8., 11. }, { 3., 6., 9., 12. } };
double[][] pvals = { { 4., 1., 1. }, { 1., 2., 3. }, { 1., 3., 6. } };
double[][] ivals = { { 1., 0., 0., 0. }, { 0., 1., 0., 0. }, { 0., 0., 1., 0. } };
double[][] evals = { { 0., 1., 0., 0. }, { 1., 0., 2.e-7, 0. }, { 0., -2.e-7, 0., 1. }, { 0., 0., 1., 0. } };
double[][] square = { { 166., 188., 210. }, { 188., 214., 240. }, { 210., 240., 270. } };
double[][] sqSolution = { { 13. }, { 15. } };
double[][] condmat = { { 1., 3. }, { 7., 9. } };
int rows = 3, cols = 4;
int invalidld = 5;
int raggedr = 0;
int raggedc = 4;
int validld = 3;
int nonconformld = 4;
int ib = 1, ie = 2, jb = 1, je = 3;
int[] rowindexset = { 1, 2 };
int[] badrowindexset = { 1, 3 };
int[] columnindexset = { 1, 2, 3 };
int[] badcolumnindexset = { 1, 2, 4 };
double columnsummax = 33.;
double rowsummax = 30.;
double sumofdiagonals = 15;
double sumofsquares = 650;
print("\nTesting constructors and constructor-like methods...\n");
try {
A = new Matrix(columnwise, invalidld);
errorCount = try_failure(errorCount, "Catch invalid length in packed constructor... ", "exception not thrown for invalid input");
} catch (IllegalArgumentException e) {
try_success("Catch invalid length in packed constructor... ", e.getMessage());
}
try {
A = new Matrix(rvals);
tmp = A.get(raggedr, raggedc);
} catch (IllegalArgumentException e) {
try_success("Catch ragged input to default constructor... ", e.getMessage());
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "Catch ragged input to constructor... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later");
}
try {
A = Matrix.constructWithCopy(rvals);
tmp = A.get(raggedr, raggedc);
} catch (IllegalArgumentException e) {
try_success("Catch ragged input to constructWithCopy... ", e.getMessage());
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "Catch ragged input to constructWithCopy... ", "exception not thrown in construction...ArrayIndexOutOfBoundsException thrown later");
}
A = new Matrix(columnwise, validld);
B = new Matrix(avals);
tmp = B.get(0, 0);
avals[0][0] = 0.0;
C = B.minus(A);
avals[0][0] = tmp;
B = Matrix.constructWithCopy(avals);
tmp = B.get(0, 0);
avals[0][0] = 0.0;
if ((tmp - B.get(0, 0)) != 0.0) {
errorCount = try_failure(errorCount, "constructWithCopy... ", "copy not effected... data visible outside");
} else {
try_success("constructWithCopy... ", "");
}
avals[0][0] = columnwise[0];
I = new Matrix(ivals);
try {
check(I, Matrix.identity(3, 4));
try_success("identity... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "identity... ", "identity Matrix not successfully created");
}
print("\nTesting access methods...\n");
B = new Matrix(avals);
if (B.getRowDimension() != rows) {
errorCount = try_failure(errorCount, "getRowDimension... ", "");
} else {
try_success("getRowDimension... ", "");
}
if (B.getColumnDimension() != cols) {
errorCount = try_failure(errorCount, "getColumnDimension... ", "");
} else {
try_success("getColumnDimension... ", "");
}
B = new Matrix(avals);
double[][] barray = B.getArray();
if (barray != avals) {
errorCount = try_failure(errorCount, "getArray... ", "");
} else {
try_success("getArray... ", "");
}
barray = B.getArrayCopy();
if (barray == avals) {
errorCount = try_failure(errorCount, "getArrayCopy... ", "data not (deep) copied");
}
try {
check(barray, avals);
try_success("getArrayCopy... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getArrayCopy... ", "data not successfully (deep) copied");
}
double[] bpacked = B.getColumnPackedCopy();
try {
check(bpacked, columnwise);
try_success("getColumnPackedCopy... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getColumnPackedCopy... ", "data not successfully (deep) copied by columns");
}
bpacked = B.getRowPackedCopy();
try {
check(bpacked, rowwise);
try_success("getRowPackedCopy... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getRowPackedCopy... ", "data not successfully (deep) copied by rows");
}
try {
tmp = B.get(B.getRowDimension(), B.getColumnDimension() - 1);
errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
tmp = B.get(B.getRowDimension() - 1, B.getColumnDimension());
errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("get(int,int)... OutofBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "get(int,int)... ", "OutOfBoundsException expected but not thrown");
}
try {
if (B.get(B.getRowDimension() - 1, B.getColumnDimension() - 1) != avals[B.getRowDimension() - 1][B.getColumnDimension() - 1]) {
errorCount = try_failure(errorCount, "get(int,int)... ", "Matrix entry (i,j) not successfully retreived");
} else {
try_success("get(int,int)... ", "");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "get(int,int)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
SUB = new Matrix(subavals);
try {
M = B.getMatrix(ib, ie + B.getRowDimension() + 1, jb, je);
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
M = B.getMatrix(ib, ie, jb, je + B.getColumnDimension() + 1);
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("getMatrix(int,int,int,int)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
M = B.getMatrix(ib, ie, jb, je);
try {
check(SUB, M);
try_success("getMatrix(int,int,int,int)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "submatrix not successfully retreived");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int,int)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
M = B.getMatrix(ib, ie, badcolumnindexset);
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
M = B.getMatrix(ib, ie + B.getRowDimension() + 1, columnindexset);
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("getMatrix(int,int,int[])... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
M = B.getMatrix(ib, ie, columnindexset);
try {
check(SUB, M);
try_success("getMatrix(int,int,int[])... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "submatrix not successfully retreived");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "getMatrix(int,int,int[])... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
M = B.getMatrix(badrowindexset, jb, je);
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
M = B.getMatrix(rowindexset, jb, je + B.getColumnDimension() + 1);
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("getMatrix(int[],int,int)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
M = B.getMatrix(rowindexset, jb, je);
try {
check(SUB, M);
try_success("getMatrix(int[],int,int)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "submatrix not successfully retreived");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "getMatrix(int[],int,int)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
M = B.getMatrix(badrowindexset, columnindexset);
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
M = B.getMatrix(rowindexset, badcolumnindexset);
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("getMatrix(int[],int[])... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
M = B.getMatrix(rowindexset, columnindexset);
try {
check(SUB, M);
try_success("getMatrix(int[],int[])... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "submatrix not successfully retreived");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
errorCount = try_failure(errorCount, "getMatrix(int[],int[])... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
B.set(B.getRowDimension(), B.getColumnDimension() - 1, 0.);
errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.set(B.getRowDimension() - 1, B.getColumnDimension(), 0.);
errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("set(int,int,double)... OutofBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "set(int,int,double)... ", "OutOfBoundsException expected but not thrown");
}
try {
B.set(ib, jb, 0.);
tmp = B.get(ib, jb);
try {
check(tmp, 0.);
try_success("set(int,int,double)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "set(int,int,double)... ", "Matrix element not successfully set");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "set(int,int,double)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
M = new Matrix(2, 3, 0.);
try {
B.setMatrix(ib, ie + B.getRowDimension() + 1, jb, je, M);
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.setMatrix(ib, ie, jb, je + B.getColumnDimension() + 1, M);
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("setMatrix(int,int,int,int,Matrix)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
B.setMatrix(ib, ie, jb, je, M);
try {
check(M.minus(B.getMatrix(ib, ie, jb, je)), M);
try_success("setMatrix(int,int,int,int,Matrix)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "submatrix not successfully set");
}
B.setMatrix(ib, ie, jb, je, SUB);
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
B.setMatrix(ib, ie + B.getRowDimension() + 1, columnindexset, M);
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.setMatrix(ib, ie, badcolumnindexset, M);
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("setMatrix(int,int,int[],Matrix)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
B.setMatrix(ib, ie, columnindexset, M);
try {
check(M.minus(B.getMatrix(ib, ie, columnindexset)), M);
try_success("setMatrix(int,int,int[],Matrix)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "submatrix not successfully set");
}
B.setMatrix(ib, ie, jb, je, SUB);
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "setMatrix(int,int,int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
B.setMatrix(rowindexset, jb, je + B.getColumnDimension() + 1, M);
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.setMatrix(badrowindexset, jb, je, M);
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("setMatrix(int[],int,int,Matrix)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
B.setMatrix(rowindexset, jb, je, M);
try {
check(M.minus(B.getMatrix(rowindexset, jb, je)), M);
try_success("setMatrix(int[],int,int,Matrix)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "submatrix not successfully set");
}
B.setMatrix(ib, ie, jb, je, SUB);
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "setMatrix(int[],int,int,Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
try {
B.setMatrix(rowindexset, badcolumnindexset, M);
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e) {
try {
B.setMatrix(badrowindexset, columnindexset, M);
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
try_success("setMatrix(int[],int[],Matrix)... ArrayIndexOutOfBoundsException... ", "");
}
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "ArrayIndexOutOfBoundsException expected but not thrown");
}
try {
B.setMatrix(rowindexset, columnindexset, M);
try {
check(M.minus(B.getMatrix(rowindexset, columnindexset)), M);
try_success("setMatrix(int[],int[],Matrix)... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "submatrix not successfully set");
}
} catch (java.lang.ArrayIndexOutOfBoundsException e1) {
errorCount = try_failure(errorCount, "setMatrix(int[],int[],Matrix)... ", "Unexpected ArrayIndexOutOfBoundsException");
}
print("\nTesting array-like methods...\n");
S = new Matrix(columnwise, nonconformld);
R = Matrix.random(A.getRowDimension(), A.getColumnDimension());
A = R;
try {
S = A.minus(S);
errorCount = try_failure(errorCount, "minus conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("minus conformance check... ", "");
}
if (A.minus(R).norm1() != 0.) {
errorCount = try_failure(errorCount, "minus... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)");
} else {
try_success("minus... ", "");
}
A = R.copy();
A.minusEquals(R);
Z = new Matrix(A.getRowDimension(), A.getColumnDimension());
try {
A.minusEquals(S);
errorCount = try_failure(errorCount, "minusEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("minusEquals conformance check... ", "");
}
if (A.minus(Z).norm1() != 0.) {
errorCount = try_failure(errorCount, "minusEquals... ", "(difference of identical Matrices is nonzero,\nSubsequent use of minus should be suspect)");
} else {
try_success("minusEquals... ", "");
}
A = R.copy();
B = Matrix.random(A.getRowDimension(), A.getColumnDimension());
C = A.minus(B);
try {
S = A.plus(S);
errorCount = try_failure(errorCount, "plus conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("plus conformance check... ", "");
}
try {
check(C.plus(B), A);
try_success("plus... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "plus... ", "(C = A - B, but C + B != A)");
}
C = A.minus(B);
C.plusEquals(B);
try {
A.plusEquals(S);
errorCount = try_failure(errorCount, "plusEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("plusEquals conformance check... ", "");
}
try {
check(C, A);
try_success("plusEquals... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "plusEquals... ", "(C = A - B, but C = C + B != A)");
}
A = R.uminus();
try {
check(A.plus(R), Z);
try_success("uminus... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "uminus... ", "(-A + A != zeros)");
}
A = R.copy();
O = new Matrix(A.getRowDimension(), A.getColumnDimension(), 1.0);
C = A.arrayLeftDivide(R);
try {
S = A.arrayLeftDivide(S);
errorCount = try_failure(errorCount, "arrayLeftDivide conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayLeftDivide conformance check... ", "");
}
try {
check(C, O);
try_success("arrayLeftDivide... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayLeftDivide... ", "(M.\\M != ones)");
}
try {
A.arrayLeftDivideEquals(S);
errorCount = try_failure(errorCount, "arrayLeftDivideEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayLeftDivideEquals conformance check... ", "");
}
A.arrayLeftDivideEquals(R);
try {
check(A, O);
try_success("arrayLeftDivideEquals... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayLeftDivideEquals... ", "(M.\\M != ones)");
}
A = R.copy();
try {
A.arrayRightDivide(S);
errorCount = try_failure(errorCount, "arrayRightDivide conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayRightDivide conformance check... ", "");
}
C = A.arrayRightDivide(R);
try {
check(C, O);
try_success("arrayRightDivide... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayRightDivide... ", "(M./M != ones)");
}
try {
A.arrayRightDivideEquals(S);
errorCount = try_failure(errorCount, "arrayRightDivideEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayRightDivideEquals conformance check... ", "");
}
A.arrayRightDivideEquals(R);
try {
check(A, O);
try_success("arrayRightDivideEquals... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayRightDivideEquals... ", "(M./M != ones)");
}
A = R.copy();
B = Matrix.random(A.getRowDimension(), A.getColumnDimension());
try {
S = A.arrayTimes(S);
errorCount = try_failure(errorCount, "arrayTimes conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayTimes conformance check... ", "");
}
C = A.arrayTimes(B);
try {
check(C.arrayRightDivideEquals(B), A);
try_success("arrayTimes... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayTimes... ", "(A = R, C = A.*B, but C./B != A)");
}
try {
A.arrayTimesEquals(S);
errorCount = try_failure(errorCount, "arrayTimesEquals conformance check... ", "nonconformance not raised");
} catch (IllegalArgumentException e) {
try_success("arrayTimesEquals conformance check... ", "");
}
A.arrayTimesEquals(B);
try {
check(A.arrayRightDivideEquals(B), R);
try_success("arrayTimesEquals... ", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "arrayTimesEquals... ", "(A = R, A = A.*B, but A./B != R)");
}
print("\nTesting I/O methods...\n");
try {
DecimalFormat fmt = new DecimalFormat("0.0000E00");
fmt.setDecimalFormatSymbols(new DecimalFormatSymbols(Locale.US));
PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out"));
A.print(FILE, fmt, 10);
FILE.close();
R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out")));
if (A.minus(R).norm1() < .001) {
try_success("print()/read()...", "");
} else {
errorCount = try_failure(errorCount, "print()/read()...", "Matrix read from file does not match Matrix printed to file");
}
} catch (java.io.IOException ioe) {
warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry");
} catch (Exception e) {
try {
e.printStackTrace(System.out);
warningCount = try_warning(warningCount, "print()/read()...", "Formatting error... will try JDK1.1 reformulation...");
DecimalFormat fmt = new DecimalFormat("0.0000");
PrintWriter FILE = new PrintWriter(new FileOutputStream("JamaTestMatrix.out"));
A.print(FILE, fmt, 10);
FILE.close();
R = Matrix.read(new BufferedReader(new FileReader("JamaTestMatrix.out")));
if (A.minus(R).norm1() < .001) {
try_success("print()/read()...", "");
} else {
errorCount = try_failure(errorCount, "print()/read() (2nd attempt) ...", "Matrix read from file does not match Matrix printed to file");
}
} catch (java.io.IOException ioe) {
warningCount = try_warning(warningCount, "print()/read()...", "unexpected I/O error, unable to run print/read test; check write permission in current directory and retry");
}
}
R = Matrix.random(A.getRowDimension(), A.getColumnDimension());
String tmpname = "TMPMATRIX.serial";
try {
ObjectOutputStream out = new ObjectOutputStream(new FileOutputStream(tmpname));
out.writeObject(R);
ObjectInputStream sin = new ObjectInputStream(new FileInputStream(tmpname));
A = (Matrix) sin.readObject();
try {
check(A, R);
try_success("writeObject(Matrix)/readObject(Matrix)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "Matrix not serialized correctly");
}
} catch (java.io.IOException ioe) {
warningCount = try_warning(warningCount, "writeObject()/readObject()...", "unexpected I/O error, unable to run serialization test; check write permission in current directory and retry");
} catch (Exception e) {
errorCount = try_failure(errorCount, "writeObject(Matrix)/readObject(Matrix)...", "unexpected error in serialization test");
}
print("\nTesting linear algebra methods...\n");
A = new Matrix(columnwise, 3);
T = new Matrix(tvals);
T = A.transpose();
try {
check(A.transpose(), T);
try_success("transpose...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "transpose()...", "transpose unsuccessful");
}
A.transpose();
try {
check(A.norm1(), columnsummax);
try_success("norm1...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "norm1()...", "incorrect norm calculation");
}
try {
check(A.normInf(), rowsummax);
try_success("normInf()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "normInf()...", "incorrect norm calculation");
}
try {
check(A.normF(), Math.sqrt(sumofsquares));
try_success("normF...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "normF()...", "incorrect norm calculation");
}
try {
check(A.trace(), sumofdiagonals);
try_success("trace()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "trace()...", "incorrect trace calculation");
}
try {
check(A.getMatrix(0, A.getRowDimension() - 1, 0, A.getRowDimension() - 1).det(), 0.);
try_success("det()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "det()...", "incorrect determinant calculation");
}
SQ = new Matrix(square);
try {
check(A.times(A.transpose()), SQ);
try_success("times(Matrix)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "times(Matrix)...", "incorrect Matrix-Matrix product calculation");
}
try {
check(A.times(0.), Z);
try_success("times(double)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "times(double)...", "incorrect Matrix-scalar product calculation");
}
A = new Matrix(columnwise, 4);
QRDecomposition QR = A.qr();
R = QR.getR();
try {
check(A, QR.getQ().times(R));
try_success("QRDecomposition...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "QRDecomposition...", "incorrect QR decomposition calculation");
}
SingularValueDecomposition SVD = A.svd();
try {
check(A, SVD.getU().times(SVD.getS().times(SVD.getV().transpose())));
try_success("SingularValueDecomposition...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "SingularValueDecomposition...", "incorrect singular value decomposition calculation");
}
DEF = new Matrix(rankdef);
try {
check(DEF.rank(), Math.min(DEF.getRowDimension(), DEF.getColumnDimension()) - 1);
try_success("rank()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "rank()...", "incorrect rank calculation");
}
B = new Matrix(condmat);
SVD = B.svd();
double[] singularvalues = SVD.getSingularValues();
try {
check(B.cond(), singularvalues[0] / singularvalues[Math.min(B.getRowDimension(), B.getColumnDimension()) - 1]);
try_success("cond()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "cond()...", "incorrect condition number calculation");
}
int n = A.getColumnDimension();
A = A.getMatrix(0, n - 1, 0, n - 1);
A.set(0, 0, 0.);
LUDecomposition LU = A.lu();
try {
check(A.getMatrix(LU.getPivot(), 0, n - 1), LU.getL().times(LU.getU()));
try_success("LUDecomposition...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "LUDecomposition...", "incorrect LU decomposition calculation");
}
X = A.inverse();
try {
check(A.times(X), Matrix.identity(3, 3));
try_success("inverse()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "inverse()...", "incorrect inverse calculation");
}
O = new Matrix(SUB.getRowDimension(), 1, 1.0);
SOL = new Matrix(sqSolution);
SQ = SUB.getMatrix(0, SUB.getRowDimension() - 1, 0, SUB.getRowDimension() - 1);
try {
check(SQ.solve(SOL), O);
try_success("solve()...", "");
} catch (java.lang.IllegalArgumentException e1) {
errorCount = try_failure(errorCount, "solve()...", e1.getMessage());
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "solve()...", e.getMessage());
}
A = new Matrix(pvals);
CholeskyDecomposition Chol = A.chol();
Matrix L = Chol.getL();
try {
check(A, L.times(L.transpose()));
try_success("CholeskyDecomposition...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "CholeskyDecomposition...", "incorrect Cholesky decomposition calculation");
}
X = Chol.solve(Matrix.identity(3, 3));
try {
check(A.times(X), Matrix.identity(3, 3));
try_success("CholeskyDecomposition solve()...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "CholeskyDecomposition solve()...", "incorrect Choleskydecomposition solve calculation");
}
EigenvalueDecomposition Eig = A.eig();
Matrix D = Eig.getD();
Matrix V = Eig.getV();
try {
check(A.times(V), V.times(D));
try_success("EigenvalueDecomposition (symmetric)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "EigenvalueDecomposition (symmetric)...", "incorrect symmetric Eigenvalue decomposition calculation");
}
A = new Matrix(evals);
Eig = A.eig();
D = Eig.getD();
V = Eig.getV();
try {
check(A.times(V), V.times(D));
try_success("EigenvalueDecomposition (nonsymmetric)...", "");
} catch (java.lang.RuntimeException e) {
errorCount = try_failure(errorCount, "EigenvalueDecomposition (nonsymmetric)...", "incorrect nonsymmetric Eigenvalue decomposition calculation");
}
print("\nTestMatrix completed.\n");
print("Total errors reported: " + Integer.toString(errorCount) + "\n");
print("Total warnings reported: " + Integer.toString(warningCount) + "\n");
}
| false |
52 | 3,262,458 | 8,452,564 | @Override
public void run() {
while (run) {
try {
URL url = new URL("http://" + server.getIp() + "/" + tomcat.getName() + "/ui/pva/version.jsp?RT=" + System.currentTimeMillis());
BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream(), Charset.forName("UTF-8")));
String inputLine;
while ((inputLine = in.readLine()) != null) {
if (inputLine.contains("currentversion")) {
String s = inputLine.substring(inputLine.indexOf("=") + 1, inputLine.length());
tomcat.setDetailInfo(s.trim());
}
}
in.close();
tomcat.setIsAlive(true);
} catch (Exception e) {
tomcat.setIsAlive(false);
}
try {
Thread.sleep(60000);
} catch (InterruptedException e) {
}
}
}
| public void run() {
try {
HttpPost httpPostRequest = new HttpPost(Feesh.device_URL);
List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>();
nameValuePairs.add(new BasicNameValuePair("c", "feed"));
nameValuePairs.add(new BasicNameValuePair("amount", String.valueOf(foodAmount)));
nameValuePairs.add(new BasicNameValuePair("type", String.valueOf(foodType)));
httpPostRequest.setEntity(new UrlEncodedFormEntity(nameValuePairs));
HttpResponse httpResponse = (HttpResponse) new DefaultHttpClient().execute(httpPostRequest);
HttpEntity entity = httpResponse.getEntity();
String resultString = "";
if (entity != null) {
InputStream instream = entity.getContent();
resultString = convertStreamToString(instream);
instream.close();
}
Message msg_toast = new Message();
msg_toast.obj = resultString;
toast_handler.sendMessage(msg_toast);
} catch (UnsupportedEncodingException e) {
e.printStackTrace();
} catch (ClientProtocolException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
}
| false |
53 | 17,267,601 | 20,336,463 | public void setBckImg(String newPath) {
try {
File inputFile = new File(getPath());
File outputFile = new File(newPath);
if (!inputFile.getCanonicalPath().equals(outputFile.getCanonicalPath())) {
FileInputStream in = new FileInputStream(inputFile);
FileOutputStream out = null;
try {
out = new FileOutputStream(outputFile);
} catch (FileNotFoundException ex1) {
ex1.printStackTrace();
JOptionPane.showMessageDialog(null, ex1.getMessage().substring(0, Math.min(ex1.getMessage().length(), drawPanel.MAX_DIALOG_MSG_SZ)) + "-" + getClass(), "Set Bck Img", JOptionPane.ERROR_MESSAGE);
}
int c;
if (out != null) {
while ((c = in.read()) != -1) out.write(c);
out.close();
}
in.close();
}
} catch (Exception ex) {
ex.printStackTrace();
LogHandler.log(ex.getMessage(), Level.INFO, "LOG_MSG", isLoggingEnabled());
JOptionPane.showMessageDialog(null, ex.getMessage().substring(0, Math.min(ex.getMessage().length(), drawPanel.MAX_DIALOG_MSG_SZ)) + "-" + getClass(), "Set Bck Img", JOptionPane.ERROR_MESSAGE);
}
setPath(newPath);
bckImg = new ImageIcon(getPath());
}
| private static void prepare() {
System.err.println("PREPARING-----------------------------------------");
deleteHome();
InputStream configStream = null;
FileOutputStream tempStream = null;
try {
configStream = AllTests.class.getClassLoader().getResourceAsStream("net/sf/archimede/test/resources/repository.xml");
new File("temp").mkdir();
tempStream = new FileOutputStream(new File("temp/repository.xml"));
IOUtils.copy(configStream, tempStream);
} catch (FileNotFoundException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
} finally {
try {
if (configStream != null) {
configStream.close();
}
} catch (IOException e) {
e.printStackTrace();
} finally {
if (tempStream != null) {
try {
tempStream.close();
} catch (IOException e) {
e.printStackTrace();
}
}
}
}
String repositoryName = "jackrabbit.repository";
Properties jndiProperties = new Properties();
jndiProperties.put("java.naming.provider.url", "http://sf.net/projects/archimede#1");
jndiProperties.put("java.naming.factory.initial", "org.apache.jackrabbit.core.jndi.provider.DummyInitialContextFactory");
startupUtil = new StartupJcrUtil(REPOSITORY_HOME, "temp/repository.xml", repositoryName, jndiProperties);
startupUtil.init();
}
| true |
54 | 21,704,695 | 9,385,030 | public String hmacSHA256(String message, byte[] key) {
MessageDigest sha256 = null;
try {
sha256 = MessageDigest.getInstance("SHA-256");
} catch (NoSuchAlgorithmException e) {
throw new java.lang.AssertionError(this.getClass().getName() + ".hmacSHA256(): SHA-256 algorithm not found!");
}
if (key.length > 64) {
sha256.update(key);
key = sha256.digest();
sha256.reset();
}
byte block[] = new byte[64];
for (int i = 0; i < key.length; ++i) block[i] = key[i];
for (int i = key.length; i < block.length; ++i) block[i] = 0;
for (int i = 0; i < 64; ++i) block[i] ^= 0x36;
sha256.update(block);
try {
sha256.update(message.getBytes("UTF-8"));
} catch (UnsupportedEncodingException e) {
throw new java.lang.AssertionError("ITunesU.hmacSH256(): UTF-8 encoding not supported!");
}
byte[] hash = sha256.digest();
sha256.reset();
for (int i = 0; i < 64; ++i) block[i] ^= (0x36 ^ 0x5c);
sha256.update(block);
sha256.update(hash);
hash = sha256.digest();
char[] hexadecimals = new char[hash.length * 2];
for (int i = 0; i < hash.length; ++i) {
for (int j = 0; j < 2; ++j) {
int value = (hash[i] >> (4 - 4 * j)) & 0xf;
char base = (value < 10) ? ('0') : ('a' - 10);
hexadecimals[i * 2 + j] = (char) (base + value);
}
}
return new String(hexadecimals);
}
| public static void main(String[] args) throws Exception {
long start = System.currentTimeMillis();
XSLTBuddy buddy = new XSLTBuddy();
buddy.parseArgs(args);
XSLTransformer transformer = new XSLTransformer();
if (buddy.templateDir != null) {
transformer.setTemplateDir(buddy.templateDir);
}
FileReader xslReader = new FileReader(buddy.xsl);
Templates xslTemplate = transformer.getXSLTemplate(buddy.xsl, xslReader);
for (Enumeration e = buddy.params.keys(); e.hasMoreElements(); ) {
String key = (String) e.nextElement();
transformer.addParam(key, buddy.params.get(key));
}
Reader reader = null;
if (buddy.src == null) {
reader = new StringReader(XSLTBuddy.BLANK_XML);
} else {
reader = new FileReader(buddy.src);
}
if (buddy.out == null) {
String result = transformer.doTransform(reader, xslTemplate, buddy.xsl);
buddy.getLogger().info("\n\nXSLT Result:\n\n" + result + "\n");
} else {
File file = new File(buddy.out);
File dir = file.getParentFile();
if (dir != null) {
dir.mkdirs();
}
FileWriter writer = new FileWriter(buddy.out);
transformer.doTransform(reader, xslTemplate, buddy.xsl, writer);
writer.flush();
writer.close();
}
buddy.getLogger().info("Transform done successfully in " + (System.currentTimeMillis() - start) + " milliseconds");
}
| false |
55 | 18,513,921 | 430,971 | public static void copy(File src, File dst) {
try {
InputStream is = null;
OutputStream os = null;
try {
is = new BufferedInputStream(new FileInputStream(src), BUFFER_SIZE);
os = new BufferedOutputStream(new FileOutputStream(dst), BUFFER_SIZE);
byte[] buffer = new byte[BUFFER_SIZE];
int len = 0;
while ((len = is.read(buffer)) > 0) os.write(buffer, 0, len);
} finally {
if (null != is) is.close();
if (null != os) os.close();
}
} catch (Exception e) {
e.printStackTrace();
}
}
| public static void copyFile(File destFile, File src) throws IOException {
File destDir = destFile.getParentFile();
File tempFile = new File(destFile + "_tmp");
destDir.mkdirs();
InputStream is = new FileInputStream(src);
try {
FileOutputStream os = new FileOutputStream(tempFile);
try {
byte[] buf = new byte[8192];
int len;
while ((len = is.read(buf)) > 0) os.write(buf, 0, len);
} finally {
os.close();
}
} finally {
is.close();
}
destFile.delete();
if (!tempFile.renameTo(destFile)) throw new IOException("Unable to rename " + tempFile + " to " + destFile);
}
| true |
56 | 15,982,225 | 23,285,410 | private static String getDigest(String srcStr, String alg) {
Assert.notNull(srcStr);
Assert.notNull(alg);
try {
MessageDigest alga = MessageDigest.getInstance(alg);
alga.update(srcStr.getBytes());
byte[] digesta = alga.digest();
return byte2hex(digesta);
} catch (Exception e) {
throw new RuntimeException(e);
}
}
| public void displayItems() throws IOException {
URL url = new URL(SNIPPETS_FEED + "?bq=" + URLEncoder.encode(QUERY, "UTF-8") + "&key=" + DEVELOPER_KEY);
HttpURLConnection httpConnection = (HttpURLConnection) url.openConnection();
InputStream inputStream = httpConnection.getInputStream();
int ch;
while ((ch = inputStream.read()) > 0) {
System.out.print((char) ch);
}
}
| false |
57 | 7,398,604 | 820,905 | @Override
public Collection<IAuthor> doImport() throws Exception {
progress.initialize(2, "Ściągam autorów amerykańskich");
String url = "http://pl.wikipedia.org/wiki/Kategoria:Ameryka%C5%84scy_autorzy_fantastyki";
UrlResource resource = new UrlResource(url);
InputStream urlInputStream = resource.getInputStream();
StringWriter writer = new StringWriter();
IOUtils.copy(urlInputStream, writer);
progress.advance("Parsuję autorów amerykańskich");
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
DocumentBuilder builder = factory.newDocumentBuilder();
String httpDoc = writer.toString();
httpDoc = httpDoc.replaceFirst("(?s)<!DOCTYPE.+?>\\n", "");
httpDoc = httpDoc.replaceAll("(?s)<script.+?</script>", "");
httpDoc = "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>\n" + httpDoc;
ByteArrayInputStream byteInputStream = new ByteArrayInputStream(httpDoc.getBytes("UTF-8"));
Document doc = builder.parse(byteInputStream);
ArrayList<String> authorNames = new ArrayList<String>();
ArrayList<IAuthor> authors = new ArrayList<IAuthor>();
XPathFactory xpathFactory = XPathFactory.newInstance();
XPath xpath = xpathFactory.newXPath();
NodeList list = (NodeList) xpath.evaluate("//ul/li/div/div/a", doc, XPathConstants.NODESET);
for (int i = 0; i < list.getLength(); i++) {
String name = list.item(i).getTextContent();
if (StringUtils.isNotBlank(name)) {
authorNames.add(name);
}
}
list = (NodeList) xpath.evaluate("//td/ul/li/a", doc, XPathConstants.NODESET);
for (int i = 0; i < list.getLength(); i++) {
String name = list.item(i).getTextContent();
if (StringUtils.isNotBlank(name)) {
authorNames.add(name);
}
}
for (String name : authorNames) {
int idx = name.lastIndexOf(' ');
String fname = name.substring(0, idx).trim();
String lname = name.substring(idx + 1).trim();
authors.add(new Author(fname, lname));
}
progress.advance("Wykonano");
return authors;
}
| private static void readAndRewrite(File inFile, File outFile) throws IOException {
ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile)));
DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis);
Dataset ds = DcmObjectFactory.getInstance().newDataset();
dcmParser.setDcmHandler(ds.getDcmHandler());
dcmParser.parseDcmFile(null, Tags.PixelData);
PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
System.out.println("reading " + inFile + "...");
pdReader.readPixelData(false);
ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile)));
DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE;
ds.writeDataset(out, dcmEncParam);
ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength());
System.out.println("writing " + outFile + "...");
PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
pdWriter.writePixelData();
out.flush();
out.close();
System.out.println("done!");
}
| true |
58 | 19,584,493 | 4,076,629 | @Override
public String toString() {
if (byteArrayOutputStream == null) return "<Unparsed binary data: Content-Type=" + getHeader("Content-Type") + " >";
String charsetName = getCharsetName();
if (charsetName == null) charsetName = "ISO-8859-1";
try {
if (unzip) {
GZIPInputStream gzipInputStream = new GZIPInputStream(new ByteArrayInputStream(byteArrayOutputStream.toByteArray()));
ByteArrayOutputStream unzippedResult = new ByteArrayOutputStream();
IOUtils.copy(gzipInputStream, unzippedResult);
return unzippedResult.toString(charsetName);
} else {
return byteArrayOutputStream.toString(charsetName);
}
} catch (UnsupportedEncodingException e) {
throw new OutputException(e);
} catch (IOException e) {
throw new OutputException(e);
}
}
| public void uploadFile(String filename) throws RQLException {
checkFtpClient();
OutputStream out = null;
try {
out = ftpClient.storeFileStream(filename);
IOUtils.copy(new FileReader(filename), out);
out.close();
ftpClient.completePendingCommand();
} catch (IOException ex) {
throw new RQLException("Upload of local file with name " + filename + " via FTP to server " + server + " failed.", ex);
}
}
| true |
59 | 1,888,878 | 7,665,877 | protected void copyFile(File source, File destination) throws ApplicationException {
try {
OutputStream out = new FileOutputStream(destination);
DataInputStream in = new DataInputStream(new FileInputStream(source));
byte[] buf = new byte[8192];
for (int nread = in.read(buf); nread > 0; nread = in.read(buf)) {
out.write(buf, 0, nread);
}
in.close();
out.close();
} catch (IOException e) {
throw new ApplicationException("Can't copy file " + source + " to " + destination);
}
}
| public SCFFile(URL url) throws IOException {
URLConnection connection = url.openConnection();
byte[] content = new byte[connection.getContentLength()];
DataInputStream dis = new DataInputStream(connection.getInputStream());
dis.readFully(content);
dis.close();
dis = new DataInputStream(new ByteArrayInputStream(content));
header = new SCFHeader(dis);
if (!header.magicNumber.equals(".scf")) throw new RuntimeException(url + " is not an SCF file");
A = new int[header.samples];
C = new int[header.samples];
G = new int[header.samples];
T = new int[header.samples];
max = Integer.MIN_VALUE;
dis.reset();
dis.skipBytes(header.samplesOffset);
if (header.sampleSize == 1) {
if (header.version < 3.00) {
for (int i = 0; i < header.samples; ++i) {
A[i] = dis.readUnsignedByte();
if (A[i] > max) max = A[i];
C[i] = dis.readUnsignedByte();
if (C[i] > max) max = C[i];
G[i] = dis.readUnsignedByte();
if (G[i] > max) max = G[i];
T[i] = dis.readUnsignedByte();
if (T[i] > max) max = T[i];
}
} else {
for (int i = 0; i < header.samples; ++i) {
A[i] = dis.readUnsignedByte();
if (A[i] > max) max = A[i];
}
for (int i = 0; i < header.samples; ++i) {
C[i] = dis.readUnsignedByte();
if (C[i] > max) max = C[i];
}
for (int i = 0; i < header.samples; ++i) {
G[i] = dis.readUnsignedByte();
if (G[i] > max) max = G[i];
}
for (int i = 0; i < header.samples; ++i) {
T[i] = dis.readUnsignedByte();
if (T[i] > max) max = T[i];
}
}
} else if (header.sampleSize == 2) {
if (header.version < 3.00) {
for (int i = 0; i < header.samples; ++i) {
A[i] = dis.readUnsignedShort();
if (A[i] > max) max = A[i];
C[i] = dis.readUnsignedShort();
if (C[i] > max) max = C[i];
G[i] = dis.readUnsignedShort();
if (G[i] > max) max = G[i];
T[i] = dis.readUnsignedShort();
if (T[i] > max) max = T[i];
}
} else {
for (int i = 0; i < header.samples; ++i) {
A[i] = dis.readUnsignedShort();
if (A[i] > max) max = A[i];
}
for (int i = 0; i < header.samples; ++i) {
C[i] = dis.readUnsignedShort();
if (C[i] > max) max = C[i];
}
for (int i = 0; i < header.samples; ++i) {
G[i] = dis.readUnsignedShort();
if (G[i] > max) max = G[i];
}
for (int i = 0; i < header.samples; ++i) {
T[i] = dis.readUnsignedShort();
if (T[i] > max) max = T[i];
}
}
}
centers = new int[header.bases];
byte[] buf = new byte[header.bases];
dis.reset();
dis.skipBytes(header.basesOffset);
if (header.version < 3.00) {
for (int i = 0; i < header.bases; ++i) {
centers[i] = dis.readInt();
dis.skipBytes(4);
buf[i] = dis.readByte();
dis.skipBytes(3);
}
} else {
for (int i = 0; i < header.bases; ++i) centers[i] = dis.readInt();
dis.skipBytes(4 * header.bases);
dis.readFully(buf);
}
sequence = new String(buf);
dis.close();
}
| false |
60 | 11,044,947 | 16,851,953 | public static void copyFile(File in, File out, boolean append) throws IOException {
FileChannel inChannel = new FileInputStream(in).getChannel();
FileChannel outChannel = new FileOutputStream(out, append).getChannel();
try {
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (IOException e) {
throw e;
} finally {
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
}
}
| @Test
public void testTrainingDefault() throws IOException {
File temp = File.createTempFile("fannj_", ".tmp");
temp.deleteOnExit();
IOUtils.copy(this.getClass().getResourceAsStream("xor.data"), new FileOutputStream(temp));
List<Layer> layers = new ArrayList<Layer>();
layers.add(Layer.create(2));
layers.add(Layer.create(3, ActivationFunction.FANN_SIGMOID_SYMMETRIC));
layers.add(Layer.create(1, ActivationFunction.FANN_SIGMOID_SYMMETRIC));
Fann fann = new Fann(layers);
Trainer trainer = new Trainer(fann);
float desiredError = .001f;
float mse = trainer.train(temp.getPath(), 500000, 1000, desiredError);
assertTrue("" + mse, mse <= desiredError);
}
| true |
61 | 19,693,561 | 22,137,813 | public Model read(String uri, String base, String lang) {
try {
URL url = new URL(uri);
return read(url.openStream(), base, lang);
} catch (IOException e) {
throw new OntologyException("I/O error while reading from uri " + uri);
}
}
| public static ObjectID[] sortDecending(ObjectID[] oids) {
for (int i = 1; i < oids.length; i++) {
ObjectID iId = oids[i];
for (int j = 0; j < oids.length - i; j++) {
if (oids[j].getTypePrefix() > oids[j + 1].getTypePrefix()) {
ObjectID temp = oids[j];
oids[j] = oids[j + 1];
oids[j + 1] = temp;
}
}
}
return oids;
}
| false |
62 | 601,908 | 12,678,589 | private static void readAndRewrite(File inFile, File outFile) throws IOException {
ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile)));
DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis);
Dataset ds = DcmObjectFactory.getInstance().newDataset();
dcmParser.setDcmHandler(ds.getDcmHandler());
dcmParser.parseDcmFile(null, Tags.PixelData);
PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
System.out.println("reading " + inFile + "...");
pdReader.readPixelData(false);
ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile)));
DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE;
ds.writeDataset(out, dcmEncParam);
ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength());
System.out.println("writing " + outFile + "...");
PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
pdWriter.writePixelData();
out.flush();
out.close();
System.out.println("done!");
}
| public static boolean decodeFileToFile(String infile, String outfile) {
boolean success = false;
java.io.InputStream in = null;
java.io.OutputStream out = null;
try {
in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE);
out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile));
byte[] buffer = new byte[65536];
int read = -1;
while ((read = in.read(buffer)) >= 0) {
out.write(buffer, 0, read);
}
success = true;
} catch (java.io.IOException exc) {
exc.printStackTrace();
} finally {
try {
in.close();
} catch (Exception exc) {
}
try {
out.close();
} catch (Exception exc) {
}
}
return success;
}
| true |
63 | 18,293,811 | 7,303,337 | private static void copy(String from_name, String to_name) throws IOException {
File from_file = new File(from_name);
File to_file = new File(to_name);
if (!from_file.exists()) abort("�������� ���� �� ���������" + from_file);
if (!from_file.isFile()) abort("���������� ����������� ��������" + from_file);
if (!from_file.canRead()) abort("�������� ���� ���������� ��� ������" + from_file);
if (from_file.isDirectory()) to_file = new File(to_file, from_file.getName());
if (to_file.exists()) {
if (!to_file.canWrite()) abort("�������� ���� ���������� ��� ������" + to_file);
System.out.println("������������ ������� ����?" + to_file.getName() + "?(Y/N):");
System.out.flush();
BufferedReader in = new BufferedReader(new InputStreamReader(System.in));
String response = in.readLine();
if (!response.equals("Y") && !response.equals("y")) abort("������������ ���� �� ��� �����������");
} else {
String parent = to_file.getParent();
if (parent == null) parent = System.getProperty("user.dir");
File dir = new File(parent);
if (!dir.exists()) abort("������� ���������� �� ���������" + parent);
if (!dir.isFile()) abort("�� �������� ���������" + parent);
if (!dir.canWrite()) abort("������ �� ������" + parent);
}
FileInputStream from = null;
FileOutputStream to = null;
try {
from = new FileInputStream(from_file);
to = new FileOutputStream(to_file);
byte[] buffer = new byte[4096];
int bytes_read;
while ((bytes_read = from.read(buffer)) != -1) to.write(buffer, 0, bytes_read);
} finally {
if (from != null) try {
from.close();
} catch (IOException e) {
;
}
if (to != null) try {
to.close();
} catch (IOException e) {
;
}
}
}
| public static void downloadJars(IProject project, String repositoryUrl, String jarDirectory, String[] jars) {
try {
File tmpFile = null;
for (String jar : jars) {
try {
tmpFile = File.createTempFile("tmpPlugin_", ".zip");
URL url = new URL(repositoryUrl + jarDirectory + jar);
String destFilename = new File(url.getFile()).getName();
File destFile = new File(project.getLocation().append("lib").append(jarDirectory).toFile(), destFilename);
InputStream inputStream = null;
FileOutputStream outputStream = null;
try {
URLConnection urlConnection = url.openConnection();
inputStream = urlConnection.getInputStream();
outputStream = new FileOutputStream(tmpFile);
IOUtils.copy(inputStream, outputStream);
} finally {
if (outputStream != null) {
outputStream.close();
}
if (inputStream != null) {
inputStream.close();
}
}
FileUtils.copyFile(tmpFile, destFile);
} finally {
if (tmpFile != null) {
tmpFile.delete();
}
}
}
} catch (Exception ex) {
ex.printStackTrace();
}
}
| true |
64 | 13,863,615 | 15,593,678 | protected String getLibJSCode() throws IOException {
if (cachedLibJSCode == null) {
InputStream is = getClass().getResourceAsStream(JS_LIB_FILE);
StringWriter output = new StringWriter();
IOUtils.copy(is, output);
cachedLibJSCode = output.toString();
}
return cachedLibJSCode;
}
| private static void copyFile(File in, File out) throws Exception {
final FileInputStream input = new FileInputStream(in);
try {
final FileOutputStream output = new FileOutputStream(out);
try {
final byte[] buf = new byte[4096];
int readBytes = 0;
while ((readBytes = input.read(buf)) != -1) {
output.write(buf, 0, readBytes);
}
} finally {
output.close();
}
} finally {
input.close();
}
}
| true |
65 | 16,298,029 | 3,931,480 | public String md5(String password) {
MessageDigest m = null;
try {
m = MessageDigest.getInstance("MD5");
} catch (NoSuchAlgorithmException ex) {
}
m.update(password.getBytes(), 0, password.length());
return new BigInteger(1, m.digest()).toString(16);
}
| public final String encrypt(final String plaintext, final String salt) {
if (plaintext == null) {
throw new NullPointerException();
}
if (salt == null) {
throw new NullPointerException();
}
try {
final MessageDigest md = MessageDigest.getInstance("SHA");
md.update((plaintext + salt).getBytes("UTF-8"));
return new BASE64Encoder().encode(md.digest());
} catch (NoSuchAlgorithmException e) {
throw new EncryptionException(e);
} catch (UnsupportedEncodingException e) {
throw new EncryptionException(e);
}
}
| true |
66 | 20,691,789 | 2,467,221 | public static void copyFile(File inputFile, File outputFile) throws IOException {
FileChannel inChannel = null;
FileChannel outChannel = null;
try {
inChannel = new FileInputStream(inputFile).getChannel();
outChannel = new FileOutputStream(outputFile).getChannel();
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (IOException e) {
throw e;
} finally {
try {
if (inChannel != null) {
inChannel.close();
}
if (outChannel != null) {
outChannel.close();
}
} catch (IOException e) {
throw e;
}
}
}
| void copyFile(File src, File dst) throws IOException {
InputStream in = new FileInputStream(src);
OutputStream out = new FileOutputStream(dst);
byte[] buf = new byte[1024];
int len;
while ((len = in.read(buf)) > 0) out.write(buf, 0, len);
in.close();
out.close();
}
| true |
67 | 2,232,619 | 7,577,030 | public void testStorageStringWriter() throws Exception {
TranslationResponseInMemory r = new TranslationResponseInMemory(2048, "UTF-8");
{
Writer w = r.getWriter();
w.write("This is an example");
w.write(" and another one.");
w.flush();
assertEquals("This is an example and another one.", r.getText());
}
{
InputStream input = r.getInputStream();
StringWriter writer = new StringWriter();
try {
IOUtils.copy(input, writer, "UTF-8");
} finally {
input.close();
writer.close();
}
assertEquals("This is an example and another one.", writer.toString());
}
try {
r.getOutputStream();
fail("Is not allowed as you already called getWriter().");
} catch (IOException e) {
}
{
Writer output = r.getWriter();
output.write(" and another line");
output.write(" and write some more");
assertEquals("This is an example and another one. and another line and write some more", r.getText());
}
{
r.addText(" and some more.");
assertEquals("This is an example and another one. and another line and write some more and some more.", r.getText());
}
r.setEndState(ResponseStateOk.getInstance());
assertEquals(ResponseStateOk.getInstance(), r.getEndState());
try {
r.getWriter();
fail("Previous line should throw IOException as result closed.");
} catch (IOException e) {
}
}
| private void zipFiles(File file, File[] fa) throws Exception {
File f = new File(file, ALL_FILES_NAME);
if (f.exists()) {
f.delete();
f = new File(file, ALL_FILES_NAME);
}
ZipOutputStream zoutstrm = new ZipOutputStream(new FileOutputStream(f));
for (int i = 0; i < fa.length; i++) {
ZipEntry zipEntry = new ZipEntry(fa[i].getName());
zoutstrm.putNextEntry(zipEntry);
FileInputStream fr = new FileInputStream(fa[i]);
byte[] buffer = new byte[1024];
int readCount = 0;
while ((readCount = fr.read(buffer)) > 0) {
zoutstrm.write(buffer, 0, readCount);
}
fr.close();
zoutstrm.closeEntry();
}
zoutstrm.close();
log("created zip file: " + file.getName() + "/" + ALL_FILES_NAME);
}
| true |
68 | 7,066,835 | 1,966,262 | protected List<Datastream> getDatastreams(final DepositCollection pDeposit) throws IOException, SWORDException {
List<Datastream> tDatastreams = new ArrayList<Datastream>();
LOG.debug("copying file");
String tZipTempFileName = super.getTempDir() + "uploaded-file.tmp";
IOUtils.copy(pDeposit.getFile(), new FileOutputStream(tZipTempFileName));
Datastream tDatastream = new LocalDatastream(super.getGenericFileName(pDeposit), this.getContentType(), tZipTempFileName);
tDatastreams.add(tDatastream);
tDatastreams.addAll(_zipFile.getFiles(tZipTempFileName));
return tDatastreams;
}
| public static boolean encodeFileToFile(String infile, String outfile) {
boolean success = false;
java.io.InputStream in = null;
java.io.OutputStream out = null;
try {
in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE);
out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile));
byte[] buffer = new byte[65536];
int read = -1;
while ((read = in.read(buffer)) >= 0) {
out.write(buffer, 0, read);
}
success = true;
} catch (java.io.IOException exc) {
exc.printStackTrace();
} finally {
try {
in.close();
} catch (Exception exc) {
}
try {
out.close();
} catch (Exception exc) {
}
}
return success;
}
| true |
69 | 17,217,414 | 17,984,312 | public void addEntry(InputStream jis, JarEntry entry) throws IOException, URISyntaxException {
File target = new File(this.target.getPath() + entry.getName()).getAbsoluteFile();
if (!target.exists()) {
target.createNewFile();
}
if ((new File(this.source.toURI())).isDirectory()) {
File sourceEntry = new File(this.source.getPath() + entry.getName());
FileInputStream fis = new FileInputStream(sourceEntry);
byte[] classBytes = new byte[fis.available()];
fis.read(classBytes);
(new FileOutputStream(target)).write(classBytes);
} else {
readwriteStreams(jis, (new FileOutputStream(target)));
}
}
| public static void copyFile(File in, File out) throws IOException {
FileChannel inChannel = new FileInputStream(in).getChannel();
FileChannel outChannel = new FileOutputStream(out).getChannel();
try {
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (IOException e) {
throw e;
} finally {
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
}
}
| true |
70 | 7,396,680 | 5,856,886 | public static boolean copyMerge(FileSystem srcFS, Path srcDir, FileSystem dstFS, Path dstFile, boolean deleteSource, Configuration conf, String addString) throws IOException {
dstFile = checkDest(srcDir.getName(), dstFS, dstFile, false);
if (!srcFS.getFileStatus(srcDir).isDir()) return false;
OutputStream out = dstFS.create(dstFile);
try {
FileStatus contents[] = srcFS.listStatus(srcDir);
for (int i = 0; i < contents.length; i++) {
if (!contents[i].isDir()) {
InputStream in = srcFS.open(contents[i].getPath());
try {
IOUtils.copyBytes(in, out, conf, false);
if (addString != null) out.write(addString.getBytes("UTF-8"));
} finally {
in.close();
}
}
}
} finally {
out.close();
}
if (deleteSource) {
return srcFS.delete(srcDir, true);
} else {
return true;
}
}
| public BufferedWriter createOutputStream(String inFile, String outFile) throws IOException {
int k_blockSize = 1024;
int byteCount;
char[] buf = new char[k_blockSize];
File ofp = new File(outFile);
ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(ofp));
zos.setMethod(ZipOutputStream.DEFLATED);
OutputStreamWriter osw = new OutputStreamWriter(zos, "ISO-8859-1");
BufferedWriter bw = new BufferedWriter(osw);
ZipEntry zot = null;
File ifp = new File(inFile);
ZipInputStream zis = new ZipInputStream(new FileInputStream(ifp));
InputStreamReader isr = new InputStreamReader(zis, "ISO-8859-1");
BufferedReader br = new BufferedReader(isr);
ZipEntry zit = null;
while ((zit = zis.getNextEntry()) != null) {
if (zit.getName().equals("content.xml")) {
continue;
}
zot = new ZipEntry(zit.getName());
zos.putNextEntry(zot);
while ((byteCount = br.read(buf, 0, k_blockSize)) >= 0) bw.write(buf, 0, byteCount);
bw.flush();
zos.closeEntry();
}
zos.putNextEntry(new ZipEntry("content.xml"));
bw.flush();
osw = new OutputStreamWriter(zos, "UTF8");
bw = new BufferedWriter(osw);
return bw;
}
| true |
71 | 6,908,554 | 20,669,450 | static void reopen(MJIEnv env, int objref) throws IOException {
int fd = env.getIntField(objref, "fd");
long off = env.getLongField(objref, "off");
if (content.get(fd) == null) {
int mode = env.getIntField(objref, "mode");
int fnRef = env.getReferenceField(objref, "fileName");
String fname = env.getStringObject(fnRef);
if (mode == FD_READ) {
FileInputStream fis = new FileInputStream(fname);
FileChannel fc = fis.getChannel();
fc.position(off);
content.set(fd, fis);
} else if (mode == FD_WRITE) {
FileOutputStream fos = new FileOutputStream(fname);
FileChannel fc = fos.getChannel();
fc.position(off);
content.set(fd, fos);
} else {
env.throwException("java.io.IOException", "illegal mode: " + mode);
}
}
}
| private void auth() throws IOException {
authorized = false;
seqNumber = 0;
DatagramSocket ds = new DatagramSocket();
ds.setSoTimeout(UDPHID_DEFAULT_TIMEOUT);
ds.connect(addr, port);
DatagramPacket p = new DatagramPacket(buffer.array(), buffer.capacity());
for (int i = 0; i < UDPHID_DEFAULT_ATTEMPTS; i++) {
buffer.clear();
buffer.put((byte) REQ_CHALLENGE);
buffer.put(htons((short) UDPHID_PROTO));
buffer.put(name.getBytes());
ds.send(new DatagramPacket(buffer.array(), buffer.position()));
buffer.clear();
try {
ds.receive(p);
} catch (SocketTimeoutException e) {
continue;
}
switch(buffer.get()) {
case ANS_CHALLENGE:
break;
case ANS_FAILURE:
throw new IOException("REQ_FAILURE");
default:
throw new IOException("invalid packet");
}
byte challenge_id = buffer.get();
int challenge_len = (int) buffer.get();
byte[] challenge = new byte[challenge_len];
buffer.get(challenge, 0, p.getLength() - buffer.position());
byte[] response;
try {
MessageDigest md = MessageDigest.getInstance("MD5");
md.update(challenge_id);
md.update(password.getBytes(), 0, password.length());
md.update(challenge, 0, challenge.length);
response = md.digest();
} catch (NoSuchAlgorithmException e) {
throw new IOException("NoSuchAlgorithmException: " + e.toString());
}
buffer.clear();
buffer.put((byte) REQ_RESPONSE);
buffer.put(challenge_id);
buffer.put((byte) response.length);
buffer.put(response);
buffer.put(login.getBytes());
ds.send(new DatagramPacket(buffer.array(), buffer.position()));
buffer.clear();
try {
ds.receive(p);
} catch (SocketTimeoutException e) {
continue;
}
switch(buffer.get()) {
case ANS_SUCCESS:
int sidLength = buffer.get();
sid = new byte[sidLength];
buffer.get(sid, 0, sidLength);
authorized = true;
return;
case ANS_FAILURE:
throw new IOException("access deny");
default:
throw new IOException("invalid packet");
}
}
throw new IOException("operation time out");
}
| false |
72 | 1,966,263 | 18,600,188 | public static boolean decodeFileToFile(String infile, String outfile) {
boolean success = false;
java.io.InputStream in = null;
java.io.OutputStream out = null;
try {
in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.DECODE);
out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile));
byte[] buffer = new byte[65536];
int read = -1;
while ((read = in.read(buffer)) >= 0) {
out.write(buffer, 0, read);
}
success = true;
} catch (java.io.IOException exc) {
exc.printStackTrace();
} finally {
try {
in.close();
} catch (Exception exc) {
}
try {
out.close();
} catch (Exception exc) {
}
}
return success;
}
| private void copyFile(String fileName, String messageID, boolean isError) {
try {
File inputFile = new File(fileName);
File outputFile = null;
if (isError) {
outputFile = new File(provider.getErrorDataLocation(folderName) + messageID + ".xml");
} else {
outputFile = new File(provider.getDataProcessedLocation(folderName) + messageID + ".xml");
}
FileReader in = new FileReader(inputFile);
FileWriter out = new FileWriter(outputFile);
int c;
while ((c = in.read()) != -1) out.write(c);
in.close();
out.close();
} catch (Exception e) {
}
}
| true |
73 | 8,330,064 | 12,524,253 | @Test
public void testWriteAndReadBigger() throws Exception {
JCFSFileServer server = new JCFSFileServer(defaultTcpPort, defaultTcpAddress, defaultUdpPort, defaultUdpAddress, dir, 0, 0);
JCFS.configureDiscovery(defaultUdpAddress, defaultUdpPort);
try {
server.start();
RFile file = new RFile("testreadwrite.txt");
RFileOutputStream out = new RFileOutputStream(file);
String body = "";
int size = 50 * 1024;
for (int i = 0; i < size; i++) {
body = body + "a";
}
out.write(body.getBytes("utf-8"));
out.close();
File expected = new File(dir, "testreadwrite.txt");
assertTrue(expected.isFile());
assertEquals(body.length(), expected.length());
RFileInputStream in = new RFileInputStream(file);
byte[] buffer = new byte[body.length()];
int readCount = in.read(buffer);
in.close();
assertEquals(body.length(), readCount);
String resultRead = new String(buffer, "utf-8");
assertEquals(body, resultRead);
} finally {
server.stop();
}
}
| public DialogSongList(JFrame frame) {
super(frame, "Menu_SongList", "songList");
setMinimumSize(new Dimension(400, 200));
JPanel panel, spanel;
Container contentPane;
(contentPane = getContentPane()).add(songSelector = new SongSelector(configKey, null, true));
songSelector.setSelectionAction(new Runnable() {
public void run() {
final Item<URL, MidiFileInfo> item = songSelector.getSelectedInfo();
if (item != null) {
try {
selection = new File(item.getKey().toURI());
author.setEnabled(true);
title.setEnabled(true);
difficulty.setEnabled(true);
save.setEnabled(true);
final MidiFileInfo info = item.getValue();
author.setText(info.getAuthor());
title.setText(info.getTitle());
Util.selectKey(difficulty, info.getDifficulty());
return;
} catch (Exception e) {
}
}
selection = null;
author.setEnabled(false);
title.setEnabled(false);
difficulty.setEnabled(false);
save.setEnabled(false);
}
});
contentPane.add(panel = new JPanel(), BorderLayout.SOUTH);
panel.setLayout(new BorderLayout());
JScrollPane scrollPane;
panel.add(scrollPane = new JScrollPane(spanel = new JPanel()), BorderLayout.NORTH);
scrollPane.setPreferredSize(new Dimension(0, 60));
Util.addLabeledComponent(spanel, "Lbl_Author", author = new JTextField(10));
Util.addLabeledComponent(spanel, "Lbl_Title", title = new JTextField(14));
Util.addLabeledComponent(spanel, "Lbl_Difficulty", difficulty = new JComboBox());
difficulty.addItem(new Item<Byte, String>((byte) -1, ""));
for (Map.Entry<Byte, String> entry : SongSelector.DIFFICULTIES.entrySet()) {
final String value = entry.getValue();
difficulty.addItem(new Item<Byte, String>(entry.getKey(), Util.getMsg(value, value), value));
}
spanel.add(save = new JButton());
Util.updateButtonText(save, "Save");
save.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
final File selected = MidiSong.setMidiFileInfo(selection, author.getText(), title.getText(), getAsByte(difficulty));
SongSelector.refresh();
try {
songSelector.setSelected(selected == null ? null : selected.toURI().toURL());
} catch (MalformedURLException ex) {
}
}
});
author.setEnabled(false);
title.setEnabled(false);
difficulty.setEnabled(false);
save.setEnabled(false);
JButton button;
panel.add(spanel = new JPanel(), BorderLayout.WEST);
spanel.add(button = new JButton());
Util.updateButtonText(button, "Import");
button.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
final File inputFile = KeyboardHero.midiFile();
try {
if (inputFile == null) return;
final File dir = (new File(Util.DATA_FOLDER + MidiSong.MIDI_FILES_DIR));
if (dir.exists()) {
if (!dir.isDirectory()) {
Util.error(Util.getMsg("Err_MidiFilesDirNotDirectory"), dir.getParent());
return;
}
} else if (!dir.mkdirs()) {
Util.error(Util.getMsg("Err_CouldntMkDir"), dir.getParent());
return;
}
File outputFile = new File(dir.getPath() + File.separator + inputFile.getName());
if (!outputFile.exists() || KeyboardHero.confirm("Que_FileExistsOverwrite")) {
final FileChannel inChannel = new FileInputStream(inputFile).getChannel();
inChannel.transferTo(0, inChannel.size(), new FileOutputStream(outputFile).getChannel());
}
} catch (Exception ex) {
Util.getMsg(Util.getMsg("Err_CouldntImportSong"), ex.toString());
}
SongSelector.refresh();
}
});
spanel.add(button = new JButton());
Util.updateButtonText(button, "Delete");
button.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
if (KeyboardHero.confirm(Util.getMsg("Que_SureToDelete"))) {
try {
new File(songSelector.getSelectedFile().toURI()).delete();
} catch (Exception ex) {
Util.error(Util.getMsg("Err_CouldntDeleteFile"), ex.toString());
}
SongSelector.refresh();
}
}
});
panel.add(spanel = new JPanel(), BorderLayout.CENTER);
spanel.setLayout(new FlowLayout());
spanel.add(button = new JButton());
Util.updateButtonText(button, "Close");
button.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
close();
}
});
spanel.add(button = new JButton());
Util.updateButtonText(button, "Play");
button.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
Game.newGame(songSelector.getSelectedFile());
close();
}
});
panel.add(spanel = new JPanel(), BorderLayout.EAST);
spanel.add(button = new JButton());
Util.updateButtonText(button, "Refresh");
button.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
SongSelector.refresh();
}
});
getRootPane().setDefaultButton(button);
instance = this;
}
| true |
74 | 4,376,758 | 22,249,465 | public void setKey(String key) {
MessageDigest md5;
byte[] mdKey = new byte[32];
try {
md5 = MessageDigest.getInstance("MD5");
md5.update(key.getBytes());
byte[] digest = md5.digest();
System.arraycopy(digest, 0, mdKey, 0, 16);
System.arraycopy(digest, 0, mdKey, 16, 16);
} catch (Exception e) {
System.out.println("MD5 not implemented, can't generate key out of string!");
System.exit(1);
}
setKey(mdKey);
}
| public static String getWebPage(URL urlObj) {
try {
String content = "";
InputStreamReader is = new InputStreamReader(urlObj.openStream());
BufferedReader reader = new BufferedReader(is);
String line;
while ((line = reader.readLine()) != null) {
content += line;
}
return content;
} catch (IOException e) {
throw new Error("The page " + quote(urlObj.toString()) + "could not be retrieved." + "\nThis is could be caused by a number of things:" + "\n" + "\n - the computer hosting the web page you want is down, or has returned an error" + "\n - your computer does not have Internet access" + "\n - the heat death of the universe has occurred, taking down all web servers with it");
}
}
| false |
75 | 105,319 | 16,341,721 | private String MD5Sum(String input) {
String hashtext = null;
try {
MessageDigest md = MessageDigest.getInstance("MD5");
md.reset();
md.update(input.getBytes());
byte[] digest = md.digest();
BigInteger bigInt = new BigInteger(1, digest);
hashtext = bigInt.toString(16);
while (hashtext.length() < 32) {
hashtext = "0" + hashtext;
}
} catch (NoSuchAlgorithmException e) {
e.printStackTrace();
}
return hashtext;
}
| public boolean isPasswordCorrect(String attempt) {
try {
MessageDigest digest = MessageDigest.getInstance(attempt);
digest.update(salt);
digest.update(attempt.getBytes("UTF-8"));
byte[] attemptHash = digest.digest();
return attemptHash.equals(hash);
} catch (UnsupportedEncodingException ex) {
Logger.getLogger(UserRecord.class.getName()).log(Level.SEVERE, null, ex);
return false;
} catch (NoSuchAlgorithmException ex) {
Logger.getLogger(UserRecord.class.getName()).log(Level.SEVERE, null, ex);
return false;
}
}
| true |
76 | 7,839,811 | 4,056,440 | public static String md5(String input) {
byte[] temp;
try {
MessageDigest messageDigest;
messageDigest = MessageDigest.getInstance("MD5");
messageDigest.update(input.getBytes());
temp = messageDigest.digest();
} catch (Exception e) {
return null;
}
return MyUtils.byte2HexStr(temp);
}
| public final String hashPassword(final String password) {
try {
if (salt == null) {
salt = new byte[16];
SecureRandom sr = SecureRandom.getInstance("SHA1PRNG");
sr.setSeed(System.currentTimeMillis());
sr.nextBytes(salt);
}
MessageDigest md = MessageDigest.getInstance("SHA");
md.update(salt);
md.update(password.getBytes("UTF-8"));
byte[] hash = md.digest();
for (int i = 0; i < (1999); i++) {
md.reset();
hash = md.digest(hash);
}
return byteToString(hash, 60);
} catch (Exception exception) {
log.error(exception);
return null;
}
}
| true |
77 | 4,207,693 | 5,713,525 | private synchronized boolean saveU(URL url, String typeFlag, byte[] arrByte) {
BufferedReader buffReader = null;
BufferedOutputStream buffOS = null;
URLConnection urlconnection = null;
char flagChar = '0';
boolean flag = true;
try {
urlconnection = url.openConnection();
urlconnection.setDoOutput(true);
urlconnection.setDoInput(true);
urlconnection.setUseCaches(false);
urlconnection.setRequestProperty("Content-type", "application/octet-stream");
buffOS = new BufferedOutputStream(urlconnection.getOutputStream());
buffOS.write((byte[]) typeFlag.getBytes());
buffOS.write(arrByte);
buffOS.flush();
if (Config.DEBUG) System.out.println("Applet output file successfully! ");
buffReader = new BufferedReader(new InputStreamReader(urlconnection.getInputStream()));
StringBuffer stringBuff = new StringBuffer();
String serReturnMess = buffReader.readLine();
if (Config.DEBUG) System.out.println("Applet check status successfully! " + serReturnMess);
flagChar = '2';
if (serReturnMess != null) {
stringBuff.append(serReturnMess);
serReturnMess = serReturnMess.substring(serReturnMess.indexOf(32)).trim() + '2';
flagChar = serReturnMess.charAt(0);
}
while ((serReturnMess = buffReader.readLine()) != null) {
if (serReturnMess.length() <= 0) break;
}
} catch (Throwable e) {
e.printStackTrace();
return false;
} finally {
try {
if (buffOS != null) buffOS.close();
if (buffReader != null) buffReader.close();
} catch (Throwable e) {
e.printStackTrace();
}
if (flagChar == '2' || flagChar == '3') flag = true; else flag = false;
}
return flag;
}
| private byte[] getFileFromFtp(String remote) throws Exception {
ftp = new FTPClient();
int reply;
ftp.connect(ftpServer);
reply = ftp.getReplyCode();
if (!FTPReply.isPositiveCompletion(reply)) {
ftp.disconnect();
throw new Exception("FTP server refused connection.");
}
if (!ftp.login(ftpUsername, ftpPassword)) {
ftp.logout();
throw new Exception("Cann't login to ftp.");
}
ftp.enterLocalPassiveMode();
ByteArrayOutputStream baos = new ByteArrayOutputStream();
ftp.retrieveFile(remote, baos);
ftp.logout();
if (ftp.isConnected()) {
try {
ftp.disconnect();
} catch (IOException f) {
}
}
return baos.toByteArray();
}
| false |
78 | 12,678,588 | 952,242 | public static boolean encodeFileToFile(String infile, String outfile) {
boolean success = false;
java.io.InputStream in = null;
java.io.OutputStream out = null;
try {
in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE);
out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile));
byte[] buffer = new byte[65536];
int read = -1;
while ((read = in.read(buffer)) >= 0) {
out.write(buffer, 0, read);
}
success = true;
} catch (java.io.IOException exc) {
exc.printStackTrace();
} finally {
try {
in.close();
} catch (Exception exc) {
}
try {
out.close();
} catch (Exception exc) {
}
}
return success;
}
| public void convert(File src, File dest) throws IOException {
InputStream in = new BufferedInputStream(new FileInputStream(src));
DcmParser p = pfact.newDcmParser(in);
Dataset ds = fact.newDataset();
p.setDcmHandler(ds.getDcmHandler());
try {
FileFormat format = p.detectFileFormat();
if (format != FileFormat.ACRNEMA_STREAM) {
System.out.println("\n" + src + ": not an ACRNEMA stream!");
return;
}
p.parseDcmFile(format, Tags.PixelData);
if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) {
System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert");
return;
}
boolean hasPixelData = p.getReadTag() == Tags.PixelData;
boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12;
int pxlen = p.getReadLength();
if (hasPixelData) {
if (inflate) {
ds.putUS(Tags.BitsAllocated, 16);
pxlen = pxlen * 4 / 3;
}
if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) {
System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert");
return;
}
}
ds.putUI(Tags.StudyInstanceUID, uid(studyUID));
ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID));
ds.putUI(Tags.SOPInstanceUID, uid(instUID));
ds.putUI(Tags.SOPClassUID, classUID);
if (!ds.contains(Tags.NumberOfSamples)) {
ds.putUS(Tags.NumberOfSamples, 1);
}
if (!ds.contains(Tags.PhotometricInterpretation)) {
ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2");
}
if (fmi) {
ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian));
}
OutputStream out = new BufferedOutputStream(new FileOutputStream(dest));
try {
} finally {
ds.writeFile(out, encodeParam());
if (hasPixelData) {
if (!skipGroupLen) {
out.write(PXDATA_GROUPLEN);
int grlen = pxlen + 8;
out.write((byte) grlen);
out.write((byte) (grlen >> 8));
out.write((byte) (grlen >> 16));
out.write((byte) (grlen >> 24));
}
out.write(PXDATA_TAG);
out.write((byte) pxlen);
out.write((byte) (pxlen >> 8));
out.write((byte) (pxlen >> 16));
out.write((byte) (pxlen >> 24));
}
if (inflate) {
int b2, b3;
for (; pxlen > 0; pxlen -= 3) {
out.write(in.read());
b2 = in.read();
b3 = in.read();
out.write(b2 & 0x0f);
out.write(b2 >> 4 | ((b3 & 0x0f) << 4));
out.write(b3 >> 4);
}
} else {
for (; pxlen > 0; --pxlen) {
out.write(in.read());
}
}
out.close();
}
System.out.print('.');
} finally {
in.close();
}
}
| true |
79 | 21,395,181 | 22,135,738 | @Test
public void test20_badSmtp() throws Exception {
Db db = DbConnection.defaultCieDbRW();
try {
db.begin();
oldSmtp = Config.getProperty(db, "com.entelience.mail.MailHelper.hostName", "localhost");
oldSupport = Config.getProperty(db, "com.entelience.esis.feature.SupportNotifier", false);
Config.setProperty(db, "com.entelience.mail.MailHelper.hostName", "127.0.10.1", 1);
Config.setProperty(db, "com.entelience.esis.feature.SupportNotifier", "true", 1);
PreparedStatement pst = db.prepareStatement("DELETE FROM t_client_errors");
db.executeUpdate(pst);
db.commit();
} catch (Exception e) {
db.rollback();
} finally {
db.safeClose();
}
}
| protected void sort(double[] a) throws Exception {
for (int i = a.length - 1; i >= 0; i--) {
boolean swapped = false;
for (int j = 0; j < i; j++) {
if (a[j] > a[j + 1]) {
double d = a[j];
a[j] = a[j + 1];
a[j + 1] = d;
swapped = true;
}
}
if (!swapped) return;
}
}
| false |
80 | 19,338,729 | 19,898,737 | public static InputStream call(String serviceUrl, Map parameters) throws IOException, RestException {
StringBuffer urlString = new StringBuffer(serviceUrl);
String query = RestClient.buildQueryString(parameters);
HttpURLConnection conn;
if ((urlString.length() + query.length() + 1) > MAX_URI_LENGTH_FOR_GET) {
URL url = new URL(urlString.toString());
conn = (HttpURLConnection) url.openConnection();
conn.setRequestProperty("User-Agent", USER_AGENT_STRING);
conn.setRequestMethod("POST");
conn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded");
conn.setDoOutput(true);
conn.getOutputStream().write(query.getBytes());
} else {
if (query.length() > 0) {
urlString.append("?").append(query);
}
URL url = new URL(urlString.toString());
conn = (HttpURLConnection) url.openConnection();
conn.setRequestProperty("User-Agent", USER_AGENT_STRING);
conn.setRequestMethod("GET");
}
int responseCode = conn.getResponseCode();
if (HttpURLConnection.HTTP_OK != responseCode) {
ByteArrayOutputStream errorBuffer = new ByteArrayOutputStream();
int read;
byte[] readBuffer = new byte[ERROR_READ_BUFFER_SIZE];
InputStream errorStream = conn.getErrorStream();
while (-1 != (read = errorStream.read(readBuffer))) {
errorBuffer.write(readBuffer, 0, read);
}
throw new RestException("Request failed, HTTP " + responseCode + ": " + conn.getResponseMessage(), errorBuffer.toByteArray());
}
return conn.getInputStream();
}
| private void updateSystem() throws IOException {
String stringUrl="http://code.google.com/p/senai-pe-cronos/downloads/list";
try {
url = new URL(stringUrl);
} catch (MalformedURLException ex) {
ex.printStackTrace();
}
InputStream is = url.openStream();
InputStreamReader isr = new InputStreamReader(is);
BufferedReader br = new BufferedReader(isr);
String linha = br.readLine();
while (linha != null) {
linha = br.readLine();
if(linha.contains("/files/updateCronos-0-")){
String[] s=linha.split("-");
String[] v=s[4].split(".exe");
versao=v[0];
println("----"+versao);
break;
}
}
stringUrl="http://senai-pe-cronos.googlecode.com/files/updateCronos-0-"+versao+".exe";
UpdateCronos update=new UpdateCronos();
try {
url = new URL(stringUrl);
} catch (MalformedURLException ex) {
ex.printStackTrace();
}
System.out.println("versão:"+versao);
if(Integer.parseInt(versao)>version){
File f = update.gravaArquivoDeURL(url,System.getProperty("user.dir"),String.valueOf(version),versao);
if(update.isS()) {
Runtime.getRuntime().exec(location+"\\update.exe");
System.exit(0);
}
}
}
| false |
81 | 16,845,107 | 7,321,949 | public boolean copyFile(File destinationFolder, File fromFile) {
boolean result = false;
String toFileName = destinationFolder.getAbsolutePath() + "/" + fromFile.getName();
File toFile = new File(toFileName);
FileInputStream from = null;
FileOutputStream to = null;
try {
from = new FileInputStream(fromFile);
to = new FileOutputStream(toFile);
byte[] buffer = new byte[4096];
int bytesRead;
while ((bytesRead = from.read(buffer)) != -1) to.write(buffer, 0, bytesRead);
} catch (FileNotFoundException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
} finally {
if (from != null) {
try {
from.close();
} catch (IOException e2) {
e2.printStackTrace();
}
if (to != null) {
try {
to.close();
result = true;
} catch (IOException e3) {
e3.printStackTrace();
}
}
}
}
return result;
}
| private boolean saveLOBDataToFileSystem() {
if ("".equals(m_attachmentPathRoot)) {
log.severe("no attachmentPath defined");
return false;
}
if (m_items == null || m_items.size() == 0) {
setBinaryData(null);
return true;
}
final DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
try {
final DocumentBuilder builder = factory.newDocumentBuilder();
final Document document = builder.newDocument();
final Element root = document.createElement("attachments");
document.appendChild(root);
document.setXmlStandalone(true);
for (int i = 0; i < m_items.size(); i++) {
log.fine(m_items.get(i).toString());
File entryFile = m_items.get(i).getFile();
final String path = entryFile.getAbsolutePath();
log.fine(path + " - " + m_attachmentPathRoot);
if (!path.startsWith(m_attachmentPathRoot)) {
log.fine("move file: " + path);
FileChannel in = null;
FileChannel out = null;
try {
final File destFolder = new File(m_attachmentPathRoot + File.separator + getAttachmentPathSnippet());
if (!destFolder.exists()) {
if (!destFolder.mkdirs()) {
log.warning("unable to create folder: " + destFolder.getPath());
}
}
final File destFile = new File(m_attachmentPathRoot + File.separator + getAttachmentPathSnippet() + File.separator + entryFile.getName());
in = new FileInputStream(entryFile).getChannel();
out = new FileOutputStream(destFile).getChannel();
in.transferTo(0, in.size(), out);
in.close();
out.close();
if (entryFile.exists()) {
if (!entryFile.delete()) {
entryFile.deleteOnExit();
}
}
entryFile = destFile;
} catch (IOException e) {
e.printStackTrace();
log.severe("unable to copy file " + entryFile.getAbsolutePath() + " to " + m_attachmentPathRoot + File.separator + getAttachmentPathSnippet() + File.separator + entryFile.getName());
} finally {
if (in != null && in.isOpen()) {
in.close();
}
if (out != null && out.isOpen()) {
out.close();
}
}
}
final Element entry = document.createElement("entry");
entry.setAttribute("name", getEntryName(i));
String filePathToStore = entryFile.getAbsolutePath();
filePathToStore = filePathToStore.replaceFirst(m_attachmentPathRoot.replaceAll("\\\\", "\\\\\\\\"), ATTACHMENT_FOLDER_PLACEHOLDER);
log.fine(filePathToStore);
entry.setAttribute("file", filePathToStore);
root.appendChild(entry);
}
final Source source = new DOMSource(document);
final ByteArrayOutputStream bos = new ByteArrayOutputStream();
final Result result = new StreamResult(bos);
final Transformer xformer = TransformerFactory.newInstance().newTransformer();
xformer.transform(source, result);
final byte[] xmlData = bos.toByteArray();
log.fine(bos.toString());
setBinaryData(xmlData);
return true;
} catch (Exception e) {
log.log(Level.SEVERE, "saveLOBData", e);
}
setBinaryData(null);
return false;
}
| true |
82 | 8,661,929 | 2,446,253 | public int addLocationInfo(int id, double lattitude, double longitude) {
int ret = 0;
Connection conn = null;
PreparedStatement psmt = null;
try {
String sql = "insert into kddb.location_info (user_id, latitude, longitude) values(?, ?, ?)";
conn = getConnection();
psmt = conn.prepareStatement(sql);
psmt.setInt(1, id);
psmt.setDouble(2, lattitude);
psmt.setDouble(3, longitude);
ret = psmt.executeUpdate();
if (ret == 1) {
conn.commit();
} else {
conn.rollback();
}
} catch (SQLException ex) {
log.error("[addLocationInfo]", ex);
} finally {
endProsess(conn, psmt, null, null);
}
return ret;
}
| private int renumberOrderBy(long tableID) throws SnapInException {
int count = 0;
Connection con = null;
Statement stmt = null;
ResultSet rs = null;
try {
con = getDataSource().getConnection();
con.setAutoCommit(false);
stmt = con.createStatement();
StringBuffer query = new StringBuffer();
query.append("SELECT ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ID).append(" FROM ").append(DatabaseConstants.TableName_JV_FIELDBEHAVIOR).append(" WHERE ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_TABLEID).append(" = ").append(tableID).append(" ORDER BY ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ORDERBY);
Vector rowIDVector = new Vector();
rs = stmt.executeQuery(query.toString());
while (rs.next()) {
count++;
rowIDVector.add(rs.getLong(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ID) + "");
}
StringBuffer updateString = new StringBuffer();
updateString.append("UPDATE ").append(DatabaseConstants.TableName_JV_FIELDBEHAVIOR).append(" SET ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ORDERBY).append(" = ? WHERE ").append(DatabaseConstants.TableFieldName_JV_FIELDBEHAVIOR_ID).append(" = ?");
PreparedStatement pstmt = con.prepareStatement(updateString.toString());
int orderByValue = ORDERBY_BY_DELTA_VALUE;
Enumeration en = rowIDVector.elements();
while (en.hasMoreElements()) {
pstmt.setInt(1, orderByValue);
pstmt.setString(2, en.nextElement().toString());
orderByValue += ORDERBY_BY_DELTA_VALUE;
pstmt.executeUpdate();
}
con.setAutoCommit(true);
if (pstmt != null) {
pstmt.close();
}
} catch (java.sql.SQLException e) {
if (con == null) {
logger.error("java.sql.SQLException", e);
} else {
try {
logger.error("Transaction is being rolled back.");
con.rollback();
con.setAutoCommit(true);
} catch (java.sql.SQLException e2) {
logger.error("java.sql.SQLException", e2);
}
}
} catch (Exception e) {
logger.error("Error occured during RenumberOrderBy", e);
} finally {
getDataSourceHelper().releaseResources(con, stmt, rs);
}
return count;
}
| true |
83 | 21,293,476 | 716,032 | public void addGames(List<Game> games) throws StadiumException, SQLException {
Connection conn = ConnectionManager.getManager().getConnection();
conn.setAutoCommit(false);
PreparedStatement stm = null;
ResultSet rs = null;
try {
for (Game game : games) {
stm = conn.prepareStatement(Statements.SELECT_STADIUM);
stm.setString(1, game.getStadiumName());
stm.setString(2, game.getStadiumCity());
rs = stm.executeQuery();
int stadiumId = -1;
while (rs.next()) {
stadiumId = rs.getInt("stadiumID");
}
if (stadiumId == -1) throw new StadiumException("No such stadium");
stm = conn.prepareStatement(Statements.INSERT_GAME);
stm.setInt(1, stadiumId);
stm.setDate(2, game.getGameDate());
stm.setTime(3, game.getGameTime());
stm.setString(4, game.getTeamA());
stm.setString(5, game.getTeamB());
stm.executeUpdate();
int gameId = getMaxId();
List<SectorPrice> sectorPrices = game.getSectorPrices();
for (SectorPrice price : sectorPrices) {
stm = conn.prepareStatement(Statements.INSERT_TICKET_PRICE);
stm.setInt(1, gameId);
stm.setInt(2, price.getSectorId());
stm.setInt(3, price.getPrice());
stm.executeUpdate();
}
}
} catch (SQLException e) {
conn.rollback();
throw e;
} finally {
rs.close();
stm.close();
}
conn.commit();
conn.setAutoCommit(true);
}
| public void getZipFiles(String filename) {
try {
String destinationname = "c:\\mods\\peu\\";
byte[] buf = new byte[1024];
ZipInputStream zipinputstream = null;
ZipEntry zipentry;
zipinputstream = new ZipInputStream(new FileInputStream(filename));
zipentry = zipinputstream.getNextEntry();
while (zipentry != null) {
String entryName = zipentry.getName();
System.out.println("entryname " + entryName);
int n;
FileOutputStream fileoutputstream;
File newFile = new File(entryName);
String directory = newFile.getParent();
if (directory == null) {
if (newFile.isDirectory()) break;
}
fileoutputstream = new FileOutputStream(destinationname + entryName);
while ((n = zipinputstream.read(buf, 0, 1024)) > -1) fileoutputstream.write(buf, 0, n);
fileoutputstream.close();
zipinputstream.closeEntry();
zipentry = zipinputstream.getNextEntry();
}
zipinputstream.close();
} catch (Exception e) {
e.printStackTrace();
}
}
| false |
84 | 1,244,216 | 3,078,767 | public String postEvent(EventDocument eventDoc, Map attachments) {
if (eventDoc == null || eventDoc.getEvent() == null) return null;
if (queue == null) {
sendEvent(eventDoc, attachments);
return eventDoc.getEvent().getEventId();
}
if (attachments != null) {
Iterator iter = attachments.entrySet().iterator();
while (iter.hasNext()) {
Map.Entry entry = (Map.Entry) iter.next();
if (entry.getValue() instanceof DataHandler) {
File file = new File(attachmentStorge + "/" + GuidUtil.generate() + entry.getKey());
try {
IOUtils.copy(((DataHandler) entry.getValue()).getInputStream(), new FileOutputStream(file));
entry.setValue(file);
} catch (IOException err) {
err.printStackTrace();
}
}
}
}
InternalEventObject eventObj = new InternalEventObject();
eventObj.setEventDocument(eventDoc);
eventObj.setAttachments(attachments);
eventObj.setSessionContext(SessionContextUtil.getCurrentContext());
eventDoc.getEvent().setEventId(GuidUtil.generate());
getQueue().post(eventObj);
return eventDoc.getEvent().getEventId();
}
| public static void copyFile(File source, File dest) throws IOException {
FileChannel in = null, out = null;
try {
in = new FileInputStream(source).getChannel();
out = new FileOutputStream(dest).getChannel();
in.transferTo(0, in.size(), out);
} catch (FileNotFoundException fnfe) {
Log.debug(fnfe);
} finally {
if (in != null) in.close();
if (out != null) out.close();
}
}
| true |
85 | 22,328,848 | 4,411,141 | protected void doRestoreOrganizeTypeRelation() throws Exception {
Connection con = null;
PreparedStatement ps = null;
ResultSet result = null;
String strDelQuery = "DELETE FROM " + Common.ORGANIZE_TYPE_RELATION_TABLE;
String strSelQuery = "SELECT parent_organize_type,child_organize_type " + "FROM " + Common.ORGANIZE_TYPE_RELATION_B_TABLE + " " + "WHERE version_no = ?";
String strInsQuery = "INSERT INTO " + Common.ORGANIZE_TYPE_RELATION_TABLE + " " + "(parent_organize_type,child_organize_type) " + "VALUES (?,?)";
DBOperation dbo = factory.createDBOperation(POOL_NAME);
try {
try {
con = dbo.getConnection();
con.setAutoCommit(false);
ps = con.prepareStatement(strDelQuery);
ps.executeUpdate();
ps = con.prepareStatement(strSelQuery);
ps.setInt(1, this.versionNO);
result = ps.executeQuery();
ps = con.prepareStatement(strInsQuery);
while (result.next()) {
ps.setString(1, result.getString("parent_organize_type"));
ps.setString(2, result.getString("child_organize_type"));
int resultCount = ps.executeUpdate();
if (resultCount != 1) {
con.rollback();
throw new CesSystemException("Organize_backup.doRestoreOrganizeTypeRelation(): ERROR Inserting data " + "in T_SYS_ORGANIZE_TYPE_RELATION INSERT !! resultCount = " + resultCount);
}
}
con.commit();
} catch (SQLException se) {
con.rollback();
throw new CesSystemException("Organize_backup.doRestoreOrganizeTypeRelation(): SQLException: " + se);
} finally {
con.setAutoCommit(true);
close(dbo, ps, result);
}
} catch (SQLException se) {
throw new CesSystemException("Organize_backup.doRestoreOrganizeTypeRelation(): SQLException while committing or rollback");
}
}
| private void addDocToDB(String action, DataSource database) {
String typeOfDoc = findTypeOfDoc(action).trim().toLowerCase();
Connection con = null;
try {
con = database.getConnection();
con.setAutoCommit(false);
checkDupDoc(typeOfDoc, con);
String add = "insert into " + typeOfDoc + " values( ?, ?, ?, ?, ?, ?, ? )";
PreparedStatement prepStatement = con.prepareStatement(add);
prepStatement.setString(1, selectedCourse.getCourseId());
prepStatement.setString(2, selectedCourse.getAdmin());
prepStatement.setTimestamp(3, getTimeStamp());
prepStatement.setString(4, getLink());
prepStatement.setString(5, homePage.getUser());
prepStatement.setString(6, getText());
prepStatement.setString(7, getTitle());
prepStatement.executeUpdate();
prepStatement.close();
con.commit();
} catch (Exception e) {
sqlError = true;
e.printStackTrace();
if (con != null) try {
con.rollback();
} catch (Exception logOrIgnore) {
}
try {
throw e;
} catch (Exception e1) {
e1.printStackTrace();
}
} finally {
if (con != null) try {
con.close();
} catch (Exception logOrIgnore) {
}
}
}
| true |
86 | 17,001,260 | 8,364,547 | public static void getGPX(String gpxURL, String fName) {
try {
URL url = new URL(gpxURL);
HttpURLConnection urlConnection = (HttpURLConnection) url.openConnection();
urlConnection.setRequestMethod("GET");
urlConnection.setDoOutput(true);
urlConnection.connect();
File storage = mContext.getExternalFilesDir(null);
File file = new File(storage, fName);
FileOutputStream os = new FileOutputStream(file);
InputStream is = urlConnection.getInputStream();
byte[] buffer = new byte[1024];
int bufferLength = 0;
while ((bufferLength = is.read(buffer)) > 0) {
os.write(buffer, 0, bufferLength);
}
os.close();
} catch (MalformedURLException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
}
| @Override
public void executeInterruptible() {
encodingTerminated = false;
File destinationFile = null;
try {
Runtime runtime = Runtime.getRuntime();
IconAndFileListElement element;
while ((element = getNextFileElement()) != null) {
File origFile = element.getFile();
destinationFile = new File(encodeFileCard.getDestinationFolder().getValue(), origFile.getName());
if (!destinationFile.getParentFile().exists()) {
destinationFile.getParentFile().mkdirs();
}
actualFileLabel.setText(origFile.getName());
actualFileModel.setMaximum((int) origFile.length());
actualFileModel.setValue(0);
int bitrate;
synchronized (bitratePattern) {
Matcher bitrateMatcher = bitratePattern.matcher(encodeFileCard.getBitrate().getValue());
bitrateMatcher.find();
bitrate = Integer.parseInt(bitrateMatcher.group(1));
}
List<String> command = new LinkedList<String>();
command.add(encoderFile.getCanonicalPath());
command.add("--mp3input");
command.add("-m");
command.add("j");
String sampleFreq = Settings.getSetting("encode.sample.freq");
if (Util.isNotEmpty(sampleFreq)) {
command.add("--resample");
command.add(sampleFreq);
}
QualityElement quality = (QualityElement) ((JComboBox) encodeFileCard.getQuality().getValueComponent()).getSelectedItem();
command.add("-q");
command.add(Integer.toString(quality.getValue()));
command.add("-b");
command.add(Integer.toString(bitrate));
command.add("--cbr");
command.add("-");
command.add(destinationFile.getCanonicalPath());
if (LOG.isDebugEnabled()) {
StringBuilder commandLine = new StringBuilder();
boolean first = true;
for (String part : command) {
if (!first) commandLine.append(" ");
commandLine.append(part);
first = false;
}
LOG.debug("Command line: " + commandLine.toString());
}
encodingProcess = runtime.exec(command.toArray(new String[0]));
lastPosition = 0l;
InputStream fileStream = null;
try {
fileStream = new PositionNotifierInputStream(new FileInputStream(origFile), origFile.length(), 2048, this);
IOUtils.copy(fileStream, encodingProcess.getOutputStream());
encodingProcess.getOutputStream().close();
} finally {
IOUtils.closeQuietly(fileStream);
if (LOG.isDebugEnabled()) {
InputStream processOut = null;
try {
processOut = encodingProcess.getInputStream();
StringWriter sw = new StringWriter();
IOUtils.copy(processOut, sw);
LOG.debug("Process output stream:\n" + sw);
IOUtils.closeQuietly(processOut);
processOut = encodingProcess.getErrorStream();
sw = new StringWriter();
IOUtils.copy(processOut, sw);
LOG.debug("Process error stream:\n" + sw);
} finally {
IOUtils.closeQuietly(processOut);
}
}
}
int result = encodingProcess.waitFor();
encodingProcess = null;
if (result != 0) {
LOG.warn("Encoder process returned error code " + result);
}
if (Boolean.parseBoolean(encodeFileCard.getCopyTag().getValue())) {
MP3File mp3Input = new MP3File(origFile);
MP3File mp3Output = new MP3File(destinationFile);
boolean write = false;
if (mp3Input.hasID3v2tag()) {
ID3v2Tag id3v2Tag = new ID3v2Tag();
for (ID3v2Frame frame : mp3Input.getID3v2tag().getAllframes()) {
id3v2Tag.addFrame(frame);
}
mp3Output.setID3v2tag(id3v2Tag);
write = true;
}
if (mp3Input.hasID3v11tag()) {
mp3Output.setID3v11tag(mp3Input.getID3v11tag());
write = true;
}
if (write) mp3Output.write();
}
}
actualFileLabel.setText(Messages.getString("operations.file.encode.execute.actualfile.terminated"));
actualFileModel.setValue(actualFileModel.getMaximum());
} catch (Exception e) {
LOG.error("Cannot encode files", e);
if (!(e instanceof IOException && encodingTerminated)) MainWindowInterface.showError(e);
if (destinationFile != null) destinationFile.delete();
}
}
| false |
87 | 11,594,590 | 4,860,089 | public <T extends FetionResponse> T executeAction(FetionAction<T> fetionAction) throws IOException {
URL url = new URL(fetionAction.getProtocol().name().toLowerCase() + "://" + fetionUrl + fetionAction.getRequestData());
URLConnection connection = url.openConnection();
InputStream in = connection.getInputStream();
byte[] buffer = new byte[10240];
ByteArrayOutputStream bout = new ByteArrayOutputStream();
int read = 0;
while ((read = in.read(buffer)) > 0) {
bout.write(buffer, 0, read);
}
return fetionAction.processResponse(parseRawResponse(bout.toByteArray()));
}
| public int[] sort() {
int i, tmp;
int[] newIndex = new int[nrows];
for (i = 0; i < nrows; i++) {
newIndex[i] = i;
}
boolean change = true;
if (this.ascending) {
if (data[0][column] instanceof Comparable) {
while (change) {
change = false;
for (i = 0; i < nrows - 1; i++) {
if (((Comparable) data[newIndex[i]][column]).compareTo((Comparable) data[newIndex[i + 1]][column]) > 0) {
tmp = newIndex[i];
newIndex[i] = newIndex[i + 1];
newIndex[i + 1] = tmp;
change = true;
}
}
}
return newIndex;
}
if (data[0][column] instanceof String || data[0][column] instanceof ClassLabel) {
while (change) {
change = false;
for (i = 0; i < nrows - 1; i++) {
if ((data[newIndex[i]][column].toString()).compareTo(data[newIndex[i + 1]][column].toString()) > 0) {
tmp = newIndex[i];
newIndex[i] = newIndex[i + 1];
newIndex[i + 1] = tmp;
change = true;
}
}
}
}
return newIndex;
}
if (!this.ascending) {
if (data[0][column] instanceof Comparable) {
while (change) {
change = false;
for (i = 0; i < nrows - 1; i++) {
if (((Comparable) data[newIndex[i]][column]).compareTo((Comparable) data[newIndex[i + 1]][column]) < 0) {
tmp = newIndex[i];
newIndex[i] = newIndex[i + 1];
newIndex[i + 1] = tmp;
change = true;
}
}
}
return newIndex;
}
if (data[0][column] instanceof String || data[0][column] instanceof ClassLabel) {
while (change) {
change = false;
for (i = 0; i < nrows - 1; i++) {
if ((data[newIndex[i]][column].toString()).compareTo(data[newIndex[i + 1]][column].toString()) < 0) {
tmp = newIndex[i];
newIndex[i] = newIndex[i + 1];
newIndex[i + 1] = tmp;
change = true;
}
}
}
}
return newIndex;
} else return newIndex;
}
| false |
88 | 1,637,147 | 547,576 | protected PredicateAnnotationRecord generatePredicateAnnotationRecord(PredicateAnnotationRecord par, String miDescriptor) {
String annotClass = par.annotation.getType().substring(1, par.annotation.getType().length() - 1).replace('/', '.');
String methodName = getMethodName(par);
String hashKey = annotClass + CLASS_SIG_SEPARATOR_STRING + methodName;
PredicateAnnotationRecord gr = _generatedPredicateRecords.get(hashKey);
if (gr != null) {
_sharedAddData.cacheInfo.incCombinePredicateCacheHit();
return gr;
} else {
_sharedAddData.cacheInfo.incCombinePredicateCacheMiss();
}
String predicateClass = ((_predicatePackage.length() > 0) ? (_predicatePackage + ".") : "") + annotClass + "Pred";
ClassFile predicateCF = null;
File clonedFile = new File(_predicatePackageDir, annotClass.replace('.', '/') + "Pred.class");
if (clonedFile.exists() && clonedFile.isFile() && clonedFile.canRead()) {
try {
predicateCF = new ClassFile(new FileInputStream(clonedFile));
} catch (IOException ioe) {
throw new ThreadCheckException("Could not open predicate class file, source=" + clonedFile, ioe);
}
} else {
ByteArrayOutputStream baos = new ByteArrayOutputStream();
try {
_templatePredicateClassFile.write(baos);
predicateCF = new ClassFile(new ByteArrayInputStream(baos.toByteArray()));
} catch (IOException ioe) {
throw new ThreadCheckException("Could not open predicate template class file", ioe);
}
}
clonedFile.getParentFile().mkdirs();
final ArrayList<String> paramNames = new ArrayList<String>();
final HashMap<String, String> paramTypes = new HashMap<String, String>();
performCombineTreeWalk(par, new ILambda.Ternary<Object, String, String, AAnnotationsAttributeInfo.Annotation.AMemberValue>() {
public Object apply(String param1, String param2, AAnnotationsAttributeInfo.Annotation.AMemberValue param3) {
paramNames.add(param1);
paramTypes.put(param1, param2);
return null;
}
}, "");
ArrayList<PredicateAnnotationRecord> memberPARs = new ArrayList<PredicateAnnotationRecord>();
for (String key : par.combinedPredicates.keySet()) {
for (PredicateAnnotationRecord memberPAR : par.combinedPredicates.get(key)) {
if ((memberPAR.predicateClass != null) && (memberPAR.predicateMI != null)) {
memberPARs.add(memberPAR);
} else {
memberPARs.add(generatePredicateAnnotationRecord(memberPAR, miDescriptor));
}
}
}
AUTFPoolInfo predicateClassNameItem = new ASCIIPoolInfo(predicateClass.replace('.', '/'), predicateCF.getConstantPool());
int[] l = predicateCF.addConstantPoolItems(new APoolInfo[] { predicateClassNameItem });
predicateClassNameItem = predicateCF.getConstantPoolItem(l[0]).execute(CheckUTFVisitor.singleton(), null);
ClassPoolInfo predicateClassItem = new ClassPoolInfo(predicateClassNameItem, predicateCF.getConstantPool());
l = predicateCF.addConstantPoolItems(new APoolInfo[] { predicateClassItem });
predicateClassItem = predicateCF.getConstantPoolItem(l[0]).execute(CheckClassVisitor.singleton(), null);
predicateCF.setThisClass(predicateClassItem);
StringBuilder sb = new StringBuilder();
sb.append("(Ljava/lang/Object;");
if (par.passArguments) {
sb.append("[Ljava/lang/Object;");
}
for (String key : paramNames) {
sb.append(paramTypes.get(key));
}
sb.append(")Z");
String methodDesc = sb.toString();
MethodInfo templateMI = null;
MethodInfo predicateMI = null;
for (MethodInfo mi : predicateCF.getMethods()) {
if ((mi.getName().toString().equals(methodName)) && (mi.getDescriptor().toString().equals(methodDesc))) {
predicateMI = mi;
break;
} else if ((mi.getName().toString().equals("template")) && (mi.getDescriptor().toString().startsWith("(")) && (mi.getDescriptor().toString().endsWith(")Z"))) {
templateMI = mi;
}
}
if ((templateMI == null) && (predicateMI == null)) {
throw new ThreadCheckException("Could not find template predicate method in class file");
}
if (predicateMI == null) {
AUTFPoolInfo namecpi = new ASCIIPoolInfo(methodName, predicateCF.getConstantPool());
l = predicateCF.addConstantPoolItems(new APoolInfo[] { namecpi });
namecpi = predicateCF.getConstantPoolItem(l[0]).execute(CheckUTFVisitor.singleton(), null);
AUTFPoolInfo descpi = new ASCIIPoolInfo(methodDesc, predicateCF.getConstantPool());
l = predicateCF.addConstantPoolItems(new APoolInfo[] { descpi });
descpi = predicateCF.getConstantPoolItem(l[0]).execute(CheckUTFVisitor.singleton(), null);
ArrayList<AAttributeInfo> list = new ArrayList<AAttributeInfo>();
for (AAttributeInfo a : templateMI.getAttributes()) {
try {
AAttributeInfo clonedA = (AAttributeInfo) a.clone();
list.add(clonedA);
} catch (CloneNotSupportedException e) {
throw new InstrumentorException("Could not clone method attributes");
}
}
predicateMI = new MethodInfo(templateMI.getAccessFlags(), namecpi, descpi, list.toArray(new AAttributeInfo[] {}));
predicateCF.getMethods().add(predicateMI);
CodeAttributeInfo.CodeProperties props = predicateMI.getCodeAttributeInfo().getProperties();
props.maxLocals += paramTypes.size() + 1 + (par.passArguments ? 1 : 0);
InstructionList il = new InstructionList(predicateMI.getCodeAttributeInfo().getCode());
if ((par.combineMode == Combine.Mode.OR) || (par.combineMode == Combine.Mode.XOR) || (par.combineMode == Combine.Mode.IMPLIES)) {
il.insertInstr(new GenericInstruction(Opcode.ICONST_0), predicateMI.getCodeAttributeInfo());
} else {
il.insertInstr(new GenericInstruction(Opcode.ICONST_1), predicateMI.getCodeAttributeInfo());
}
boolean res;
res = il.advanceIndex();
assert res == true;
int accumVarIndex = props.maxLocals - 1;
AInstruction loadAccumInstr;
AInstruction storeAccumInstr;
if (accumVarIndex < 256) {
loadAccumInstr = new GenericInstruction(Opcode.ILOAD, (byte) accumVarIndex);
storeAccumInstr = new GenericInstruction(Opcode.ISTORE, (byte) accumVarIndex);
} else {
byte[] bytes = new byte[] { Opcode.ILOAD, 0, 0 };
Types.bytesFromShort((short) accumVarIndex, bytes, 1);
loadAccumInstr = new WideInstruction(bytes);
bytes[0] = Opcode.ISTORE;
storeAccumInstr = new WideInstruction(bytes);
}
il.insertInstr(storeAccumInstr, predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
int maxStack = 0;
int paramIndex = 1;
int lvIndex = 1;
if (par.passArguments) {
lvIndex += 1;
}
int memberCount = 0;
for (PredicateAnnotationRecord memberPAR : memberPARs) {
++memberCount;
il.insertInstr(new GenericInstruction(Opcode.ALOAD_0), predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
int curStack = 1;
if (memberPAR.passArguments) {
if (par.passArguments) {
il.insertInstr(new GenericInstruction(Opcode.ALOAD_1), predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
curStack += 1;
}
}
for (int paramNameIndex = 0; paramNameIndex < memberPAR.paramNames.size(); ++paramNameIndex) {
String t = memberPAR.paramTypes.get(memberPAR.paramNames.get(paramNameIndex));
if (t.length() == 0) {
throw new ThreadCheckException("Length of parameter type no. " + paramIndex + " string is 0 in " + predicateMI.getName() + " in class " + predicateCF.getThisClassName());
}
byte opcode;
int nextLVIndex = lvIndex;
switch(t.charAt(0)) {
case 'I':
case 'B':
case 'C':
case 'S':
case 'Z':
opcode = Opcode.ILOAD;
nextLVIndex += 1;
curStack += 1;
break;
case 'F':
opcode = Opcode.FLOAD;
nextLVIndex += 1;
curStack += 1;
break;
case '[':
case 'L':
opcode = Opcode.ALOAD;
nextLVIndex += 1;
curStack += 1;
break;
case 'J':
opcode = Opcode.LLOAD;
nextLVIndex += 2;
curStack += 2;
break;
case 'D':
opcode = Opcode.DLOAD;
nextLVIndex += 2;
curStack += 2;
break;
default:
throw new ThreadCheckException("Parameter type no. " + paramIndex + ", " + t + ", is unknown in " + predicateMI.getName() + " in class " + predicateCF.getThisClassName());
}
AInstruction load = Opcode.getShortestLoadStoreInstruction(opcode, (short) lvIndex);
il.insertInstr(load, predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
++paramIndex;
lvIndex = nextLVIndex;
}
if (curStack > maxStack) {
maxStack = curStack;
}
ReferenceInstruction predicateCallInstr = new ReferenceInstruction(Opcode.INVOKESTATIC, (short) 0);
int predicateCallIndex = predicateCF.addMethodToConstantPool(memberPAR.predicateClass.replace('.', '/'), memberPAR.predicateMI.getName().toString(), memberPAR.predicateMI.getDescriptor().toString());
predicateCallInstr.setReference(predicateCallIndex);
il.insertInstr(predicateCallInstr, predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
if ((par.combineMode == Combine.Mode.NOT) || ((par.combineMode == Combine.Mode.IMPLIES) && (memberCount == 1))) {
il.insertInstr(new GenericInstruction(Opcode.ICONST_1), predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
il.insertInstr(new GenericInstruction(Opcode.SWAP), predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
il.insertInstr(new GenericInstruction(Opcode.ISUB), predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
}
il.insertInstr(loadAccumInstr, predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
if (par.combineMode == Combine.Mode.OR) {
il.insertInstr(new GenericInstruction(Opcode.IOR), predicateMI.getCodeAttributeInfo());
} else if ((par.combineMode == Combine.Mode.AND) || (par.combineMode == Combine.Mode.NOT)) {
il.insertInstr(new GenericInstruction(Opcode.IAND), predicateMI.getCodeAttributeInfo());
} else if (par.combineMode == Combine.Mode.XOR) {
il.insertInstr(new GenericInstruction(Opcode.IADD), predicateMI.getCodeAttributeInfo());
} else if (par.combineMode == Combine.Mode.IMPLIES) {
il.insertInstr(new GenericInstruction(Opcode.IOR), predicateMI.getCodeAttributeInfo());
} else {
assert false;
}
res = il.advanceIndex();
assert res == true;
il.insertInstr(storeAccumInstr, predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
}
if (par.combineMode == Combine.Mode.XOR) {
il.insertInstr(loadAccumInstr, predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
il.insertInstr(new GenericInstruction(Opcode.ICONST_1), predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
il.insertInstr(new GenericInstruction(Opcode.ICONST_0), predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
WideBranchInstruction br2 = new WideBranchInstruction(Opcode.GOTO_W, il.getIndex() + 1);
il.insertInstr(br2, predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
int jumpIndex = il.getIndex();
il.insertInstr(new GenericInstruction(Opcode.ICONST_1), predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
res = il.rewindIndex(3);
assert res == true;
BranchInstruction br1 = new BranchInstruction(Opcode.IF_ICMPEQ, jumpIndex);
il.insertInstr(br1, predicateMI.getCodeAttributeInfo());
res = il.advanceIndex(4);
assert res == true;
} else {
il.insertInstr(loadAccumInstr, predicateMI.getCodeAttributeInfo());
res = il.advanceIndex();
assert res == true;
}
il.deleteInstr(predicateMI.getCodeAttributeInfo());
predicateMI.getCodeAttributeInfo().setCode(il.getCode());
props.maxStack = Math.max(maxStack, 2);
predicateMI.getCodeAttributeInfo().setProperties(props.maxStack, props.maxLocals);
try {
FileOutputStream fos = new FileOutputStream(clonedFile);
predicateCF.write(fos);
fos.close();
} catch (IOException e) {
throw new ThreadCheckException("Could not write cloned predicate class file, target=" + clonedFile);
}
}
gr = new PredicateAnnotationRecord(par.annotation, predicateClass, predicateMI, paramNames, paramTypes, new ArrayList<AAnnotationsAttributeInfo.Annotation.AMemberValue>(), par.passArguments, null, new HashMap<String, ArrayList<PredicateAnnotationRecord>>());
_generatedPredicateRecords.put(hashKey, gr);
return gr;
}
| public static void main(String argv[]) {
System.out.println("Starting URL tests");
System.out.println("Test 1: Simple URL test");
try {
URL url = new URL("http", "www.fsf.org", 80, "/");
if (!url.getProtocol().equals("http") || !url.getHost().equals("www.fsf.org") || url.getPort() != 80 || !url.getFile().equals("/")) System.out.println("FAILED: Simple URL test");
System.out.println("URL is: " + url.toString());
URLConnection uc = url.openConnection();
if (uc instanceof HttpURLConnection) System.out.println("Got the expected connection type");
HttpURLConnection hc = (HttpURLConnection) uc;
hc.connect();
System.out.flush();
System.out.println("Dumping response headers");
for (int i = 0; ; i++) {
String key = hc.getHeaderFieldKey(i);
if (key == null) break;
System.out.println(key + ": " + hc.getHeaderField(i));
}
System.out.flush();
System.out.println("Dumping contents");
BufferedReader br = new BufferedReader(new InputStreamReader(hc.getInputStream()));
for (String str = br.readLine(); str != null; str = br.readLine()) {
System.out.println(str);
}
System.out.flush();
hc.disconnect();
System.out.println("Content Type: " + hc.getContentType());
System.out.println("Content Encoding: " + hc.getContentEncoding());
System.out.println("Content Length: " + hc.getContentLength());
System.out.println("Date: " + hc.getDate());
System.out.println("Expiration: " + hc.getExpiration());
System.out.println("Last Modified: " + hc.getLastModified());
System.out.println("PASSED: Simple URL test");
} catch (IOException e) {
System.out.println("FAILED: Simple URL test: " + e);
}
System.out.println("Test 2: URL parsing test");
try {
URL url = new URL("http://www.urbanophile.com/arenn/trans/trans.html#mis");
if (!url.toString().equals("http://www.urbanophile.com/arenn/trans/trans.html#mis")) System.out.println("FAILED: Parse URL test: " + url.toString()); else {
System.out.println("Parsed ok: " + url.toString());
url = new URL("http://www.foo.com:8080/#");
if (!url.toString().equals("http://www.foo.com:8080/#")) System.out.println("FAILED: Parse URL test: " + url.toString()); else {
System.out.println("Parsed ok: " + url.toString());
url = new URL("http://www.bar.com/test:file/");
if (!url.toString().equals("http://www.bar.com/test:file/")) System.out.println("FAILED: Parse URL test: " + url.toString()); else {
System.out.println("Parsed ok: " + url.toString());
url = new URL("http://www.gnu.org");
if (!url.toString().equals("http://www.gnu.org/")) System.out.println("FAILED: Parse URL test: " + url.toString()); else {
System.out.println("Parsed ok: " + url.toString());
url = new URL("HTTP://www.fsf.org/");
if (!url.toString().equals("http://www.fsf.org/")) System.out.println("FAILED: Parse URL test: " + url.toString()); else {
System.out.println("Parsed ok: " + url.toString());
System.out.println("PASSED: URL parse test");
}
}
}
}
}
} catch (IOException e) {
System.out.println("FAILED: URL parsing test: " + e);
}
System.out.println("Test 3: getContent test");
try {
URL url = new URL("http://localhost/~arenn/services.txt");
Object obj = url.getContent();
System.out.println("Object type is: " + obj.getClass().getName());
if (obj instanceof InputStream) {
System.out.println("Got InputStream, so dumping contents");
BufferedReader br = new BufferedReader(new InputStreamReader((InputStream) obj));
for (String str = br.readLine(); str != null; str = br.readLine()) System.out.println(str);
br.close();
} else {
System.out.println("FAILED: Object is not an InputStream");
}
System.out.println("PASSED: getContent test");
} catch (IOException e) {
System.out.println("FAILED: getContent test: " + e);
}
System.out.println("URL test complete");
}
| false |
89 | 189,777 | 21,224,683 | public void convert(File src, File dest) throws IOException {
InputStream in = new BufferedInputStream(new FileInputStream(src));
DcmParser p = pfact.newDcmParser(in);
Dataset ds = fact.newDataset();
p.setDcmHandler(ds.getDcmHandler());
try {
FileFormat format = p.detectFileFormat();
if (format != FileFormat.ACRNEMA_STREAM) {
System.out.println("\n" + src + ": not an ACRNEMA stream!");
return;
}
p.parseDcmFile(format, Tags.PixelData);
if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) {
System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert");
return;
}
boolean hasPixelData = p.getReadTag() == Tags.PixelData;
boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12;
int pxlen = p.getReadLength();
if (hasPixelData) {
if (inflate) {
ds.putUS(Tags.BitsAllocated, 16);
pxlen = pxlen * 4 / 3;
}
if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) {
System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert");
return;
}
}
ds.putUI(Tags.StudyInstanceUID, uid(studyUID));
ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID));
ds.putUI(Tags.SOPInstanceUID, uid(instUID));
ds.putUI(Tags.SOPClassUID, classUID);
if (!ds.contains(Tags.NumberOfSamples)) {
ds.putUS(Tags.NumberOfSamples, 1);
}
if (!ds.contains(Tags.PhotometricInterpretation)) {
ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2");
}
if (fmi) {
ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian));
}
OutputStream out = new BufferedOutputStream(new FileOutputStream(dest));
try {
} finally {
ds.writeFile(out, encodeParam());
if (hasPixelData) {
if (!skipGroupLen) {
out.write(PXDATA_GROUPLEN);
int grlen = pxlen + 8;
out.write((byte) grlen);
out.write((byte) (grlen >> 8));
out.write((byte) (grlen >> 16));
out.write((byte) (grlen >> 24));
}
out.write(PXDATA_TAG);
out.write((byte) pxlen);
out.write((byte) (pxlen >> 8));
out.write((byte) (pxlen >> 16));
out.write((byte) (pxlen >> 24));
}
if (inflate) {
int b2, b3;
for (; pxlen > 0; pxlen -= 3) {
out.write(in.read());
b2 = in.read();
b3 = in.read();
out.write(b2 & 0x0f);
out.write(b2 >> 4 | ((b3 & 0x0f) << 4));
out.write(b3 >> 4);
}
} else {
for (; pxlen > 0; --pxlen) {
out.write(in.read());
}
}
out.close();
}
System.out.print('.');
} finally {
in.close();
}
}
| public void delete(String user) throws FidoDatabaseException {
try {
Connection conn = null;
Statement stmt = null;
try {
conn = fido.util.FidoDataSource.getConnection();
conn.setAutoCommit(false);
stmt = conn.createStatement();
stmt.executeUpdate("delete from Principals where PrincipalId = '" + user + "'");
stmt.executeUpdate("delete from Roles where PrincipalId = '" + user + "'");
conn.commit();
} catch (SQLException e) {
if (conn != null) conn.rollback();
throw e;
} finally {
if (stmt != null) stmt.close();
if (conn != null) conn.close();
}
} catch (SQLException e) {
throw new FidoDatabaseException(e);
}
}
| false |
90 | 5,935,063 | 19,462,026 | public String generateKey(Message msg) {
String text = msg.getDefaultMessage();
String meaning = msg.getMeaning();
if (text == null) {
return null;
}
MessageDigest md5;
try {
md5 = MessageDigest.getInstance("MD5");
} catch (NoSuchAlgorithmException e) {
throw new RuntimeException("Error initializing MD5", e);
}
try {
md5.update(text.getBytes("UTF-8"));
if (meaning != null) {
md5.update(meaning.getBytes("UTF-8"));
}
} catch (UnsupportedEncodingException e) {
throw new RuntimeException("UTF-8 unsupported", e);
}
return StringUtils.toHexString(md5.digest());
}
| public void copy(final File source, final File dest) throws IOException {
final FileInputStream in = new FileInputStream(source);
try {
final FileOutputStream out = new FileOutputStream(dest);
try {
final FileChannel inChannel = in.getChannel();
final FileChannel outChannel = out.getChannel();
inChannel.transferTo(0, inChannel.size(), outChannel);
} finally {
out.close();
}
} finally {
in.close();
}
}
| false |
91 | 13,626,014 | 23,247,146 | public void createPartControl(Composite parent) {
FormToolkit toolkit;
toolkit = new FormToolkit(parent.getDisplay());
form = toolkit.createForm(parent);
form.setText("Apple Inc.");
toolkit.decorateFormHeading(form);
form.getBody().setLayout(new GridLayout());
chart = createChart();
final DateAxis dateAxis = new DateAxis();
viewer = new GraphicalViewerImpl();
viewer.setRootEditPart(new ScalableRootEditPart());
viewer.setEditPartFactory(new ChartEditPartFactory(dateAxis));
viewer.createControl(form.getBody());
viewer.setContents(chart);
viewer.setEditDomain(new EditDomain());
viewer.addSelectionChangedListener(new ISelectionChangedListener() {
public void selectionChanged(SelectionChangedEvent event) {
System.err.println("selectionChanged " + event.getSelection());
}
});
viewer.addSelectionChangedListener(new ISelectionChangedListener() {
public void selectionChanged(SelectionChangedEvent event) {
deleteAction.update();
}
});
ActionRegistry actionRegistry = new ActionRegistry();
createActions(actionRegistry);
ContextMenuProvider cmProvider = new BlockContextMenuProvider(viewer, actionRegistry);
viewer.setContextMenu(cmProvider);
getSite().setSelectionProvider(viewer);
deleteAction.setSelectionProvider(viewer);
viewer.getEditDomain().getCommandStack().addCommandStackEventListener(new CommandStackEventListener() {
public void stackChanged(CommandStackEvent event) {
undoAction.setEnabled(viewer.getEditDomain().getCommandStack().canUndo());
redoAction.setEnabled(viewer.getEditDomain().getCommandStack().canRedo());
}
});
Data data = Data.getData();
chart.setInput(data);
DateRange dateRange = new DateRange(0, 50);
dateAxis.setDates(data.date);
dateAxis.setSelectedRange(dateRange);
slider = new Slider(form.getBody(), SWT.NONE);
slider.setMinimum(0);
slider.setMaximum(data.close.length - 1);
slider.setSelection(dateRange.start);
slider.setThumb(dateRange.length);
slider.addListener(SWT.Selection, new Listener() {
public void handleEvent(Event event) {
DateRange r = new DateRange(slider.getSelection(), slider.getThumb());
dateAxis.setSelectedRange(r);
}
});
final Scale spinner = new Scale(form.getBody(), SWT.NONE);
spinner.setMinimum(5);
spinner.setMaximum(data.close.length - 1);
spinner.setSelection(dateRange.length);
spinner.addListener(SWT.Selection, new Listener() {
public void handleEvent(Event event) {
slider.setThumb(spinner.getSelection());
DateRange r = new DateRange(slider.getSelection(), slider.getThumb());
dateAxis.setSelectedRange(r);
}
});
GridDataFactory.defaultsFor(viewer.getControl()).grab(true, true).align(GridData.FILL, GridData.FILL).applyTo(viewer.getControl());
GridDataFactory.defaultsFor(slider).grab(true, false).align(GridData.FILL, GridData.FILL).grab(true, false).applyTo(slider);
GridDataFactory.defaultsFor(spinner).grab(true, false).align(GridData.FILL, GridData.FILL).grab(true, false).applyTo(spinner);
getSite().getWorkbenchWindow().getSelectionService().addSelectionListener(this);
}
| @Override
public synchronized HttpURLConnection getTileUrlConnection(int zoom, int tilex, int tiley) throws IOException {
HttpURLConnection conn = null;
try {
String url = getTileUrl(zoom, tilex, tiley);
conn = (HttpURLConnection) new URL(url).openConnection();
} catch (IOException e) {
throw e;
} catch (Exception e) {
log.error("", e);
throw new IOException(e);
}
try {
i.set("conn", conn);
i.eval("addHeaders(conn);");
} catch (EvalError e) {
String msg = e.getMessage();
if (!AH_ERROR.equals(msg)) {
log.error(e.getClass() + ": " + e.getMessage(), e);
throw new IOException(e);
}
}
return conn;
}
| false |
92 | 1,663,419 | 22,642,186 | private static void copyFile(File in, File out) throws IOException {
FileChannel inChannel = new FileInputStream(in).getChannel();
FileChannel outChannel = new FileOutputStream(out).getChannel();
try {
inChannel.transferTo(0, inChannel.size(), outChannel);
} catch (IOException e) {
throw e;
} finally {
if (inChannel != null) inChannel.close();
if (outChannel != null) outChannel.close();
}
}
| @Override
protected int run(CmdLineParser parser) {
final List<String> args = parser.getRemainingArgs();
if (args.isEmpty()) {
System.err.println("summarysort :: WORKDIR not given.");
return 3;
}
if (args.size() == 1) {
System.err.println("summarysort :: INPATH not given.");
return 3;
}
final String outS = (String) parser.getOptionValue(outputDirOpt);
final Path wrkDir = new Path(args.get(0)), in = new Path(args.get(1)), out = outS == null ? null : new Path(outS);
final boolean verbose = parser.getBoolean(verboseOpt);
final Configuration conf = getConf();
final Timer t = new Timer();
try {
@SuppressWarnings("deprecation") final int maxReduceTasks = new JobClient(new JobConf(conf)).getClusterStatus().getMaxReduceTasks();
conf.setInt("mapred.reduce.tasks", Math.max(1, maxReduceTasks * 9 / 10));
final Job job = sortOne(conf, in, wrkDir, "summarysort", "");
System.out.printf("summarysort :: Waiting for job completion...\n");
t.start();
if (!job.waitForCompletion(verbose)) {
System.err.println("summarysort :: Job failed.");
return 4;
}
System.out.printf("summarysort :: Job complete in %d.%03d s.\n", t.stopS(), t.fms());
} catch (IOException e) {
System.err.printf("summarysort :: Hadoop error: %s\n", e);
return 4;
} catch (ClassNotFoundException e) {
throw new RuntimeException(e);
} catch (InterruptedException e) {
throw new RuntimeException(e);
}
if (out != null) try {
System.out.println("summarysort :: Merging output...");
t.start();
final FileSystem srcFS = wrkDir.getFileSystem(conf);
final FileSystem dstFS = out.getFileSystem(conf);
final OutputStream outs = dstFS.create(out);
final FileStatus[] parts = srcFS.globStatus(new Path(wrkDir, in.getName() + "-[0-9][0-9][0-9][0-9][0-9][0-9]*"));
{
int i = 0;
final Timer t2 = new Timer();
for (final FileStatus part : parts) {
t2.start();
final InputStream ins = srcFS.open(part.getPath());
IOUtils.copyBytes(ins, outs, conf, false);
ins.close();
System.out.printf("summarysort :: Merged part %d in %d.%03d s.\n", ++i, t2.stopS(), t2.fms());
}
}
for (final FileStatus part : parts) srcFS.delete(part.getPath(), false);
outs.write(BlockCompressedStreamConstants.EMPTY_GZIP_BLOCK);
outs.close();
System.out.printf("summarysort :: Merging complete in %d.%03d s.\n", t.stopS(), t.fms());
} catch (IOException e) {
System.err.printf("summarysort :: Output merging failed: %s\n", e);
return 5;
}
return 0;
}
| true |
93 | 17,267,680 | 11,103,449 | private String transferWSDL(String wsdlURL, String userPassword) throws WiseConnectionException {
String filePath = null;
try {
URL endpoint = new URL(wsdlURL);
HttpURLConnection conn = (HttpURLConnection) endpoint.openConnection();
conn.setDoOutput(false);
conn.setDoInput(true);
conn.setUseCaches(false);
conn.setRequestMethod("GET");
conn.setRequestProperty("Accept", "text/xml,application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5");
conn.setRequestProperty("Connection", "close");
if (userPassword != null) {
conn.setRequestProperty("Authorization", "Basic " + (new BASE64Encoder()).encode(userPassword.getBytes()));
}
InputStream is = null;
if (conn.getResponseCode() == 200) {
is = conn.getInputStream();
} else {
is = conn.getErrorStream();
InputStreamReader isr = new InputStreamReader(is);
StringWriter sw = new StringWriter();
char[] buf = new char[200];
int read = 0;
while (read != -1) {
read = isr.read(buf);
sw.write(buf);
}
throw new WiseConnectionException("Remote server's response is an error: " + sw.toString());
}
File file = new File(tmpDeployDir, new StringBuffer("Wise").append(IDGenerator.nextVal()).append(".xml").toString());
OutputStream fos = new BufferedOutputStream(new FileOutputStream(file));
IOUtils.copyStream(fos, is);
fos.close();
is.close();
filePath = file.getPath();
} catch (WiseConnectionException wce) {
throw wce;
} catch (Exception e) {
throw new WiseConnectionException("Wsdl download failed!", e);
}
return filePath;
}
| @Override
public void run() {
try {
IOUtils.copy(_is, processOutStr);
} catch (final IOException ioe) {
proc.destroy();
} finally {
IOUtils.closeQuietly(_is);
IOUtils.closeQuietly(processOutStr);
}
}
| true |
94 | 11,245,902 | 11,334,494 | public static void uploadFile(File in, String out, String host, int port, String path, String login, String password, boolean renameIfExist) throws IOException {
FTPClient ftp = null;
try {
m_logCat.info("Uploading " + in + " to " + host + ":" + port + " at " + path);
ftp = new FTPClient();
int reply;
ftp.connect(host, port);
m_logCat.info("Connected to " + host + "... Trying to authenticate");
reply = ftp.getReplyCode();
if (!FTPReply.isPositiveCompletion(reply)) {
ftp.disconnect();
m_logCat.error("FTP server " + host + " refused connection.");
throw new IOException("Cannot connect to the FTP Server: connection refused.");
}
if (!ftp.login(login, password)) {
ftp.logout();
throw new IOException("Cannot connect to the FTP Server: login / password is invalid!");
}
ftp.setFileType(FTP.BINARY_FILE_TYPE);
if (!ftp.changeWorkingDirectory(path)) {
m_logCat.warn("Remote working directory: " + path + "does not exist on the FTP Server ...");
m_logCat.info("Trying to create remote directory: " + path);
if (!ftp.makeDirectory(path)) {
m_logCat.error("Failed to create remote directory: " + path);
throw new IOException("Failed to store " + in + " in the remote directory: " + path);
}
if (!ftp.changeWorkingDirectory(path)) {
m_logCat.error("Failed to change directory. Unexpected error");
throw new IOException("Failed to change to remote directory : " + path);
}
}
if (out == null) {
out = in.getName();
if (out.startsWith("/")) {
out = out.substring(1);
}
}
if (renameIfExist) {
String[] files = ftp.listNames();
String f = in + out;
for (int i = 0; i < files.length; i++) {
if (files[i].equals(out)) {
m_logCat.debug("Found existing file on the server: " + out);
boolean rename_ok = false;
String bak = "_bak";
int j = 0;
String newExt = null;
while (!rename_ok) {
if (j == 0) newExt = bak; else newExt = bak + j;
if (ftp.rename(out, out + newExt)) {
m_logCat.info(out + " renamed to " + out + newExt);
rename_ok = true;
} else {
m_logCat.warn("Renaming to " + out + newExt + " has failed!, trying again ...");
j++;
}
}
break;
}
}
}
InputStream input = new FileInputStream(in);
m_logCat.info("Starting transfert of " + in);
ftp.storeFile(out, input);
m_logCat.info(in + " uploaded successfully");
input.close();
ftp.logout();
} catch (FTPConnectionClosedException e) {
m_logCat.error("Server closed connection.", e);
} finally {
if (ftp.isConnected()) {
try {
ftp.disconnect();
} catch (IOException f) {
}
}
}
}
| public void store(Component component, String componentName, int currentPilot) {
try {
PreparedStatement psta = jdbc.prepareStatement("UPDATE component_prop " + "SET size_height = ?, size_width = ?, pos_x = ?, pos_y = ? " + "WHERE pilot_id = ? " + "AND component_name = ?");
psta.setInt(1, component.getHeight());
psta.setInt(2, component.getWidth());
Point point = component.getLocation();
psta.setInt(3, point.x);
psta.setInt(4, point.y);
psta.setInt(5, currentPilot);
psta.setString(6, componentName);
int update = psta.executeUpdate();
if (update == 0) {
psta = jdbc.prepareStatement("INSERT INTO component_prop " + "(size_height, size_width, pos_x, pos_y, pilot_id, component_name) " + "VALUES (?,?,?,?,?,?)");
psta.setInt(1, component.getHeight());
psta.setInt(2, component.getWidth());
psta.setInt(3, point.x);
psta.setInt(4, point.y);
psta.setInt(5, currentPilot);
psta.setString(6, componentName);
psta.executeUpdate();
}
jdbc.commit();
} catch (SQLException e) {
jdbc.rollback();
log.debug(e);
}
}
| false |
95 | 7,344,728 | 15,286,502 | public static String hash(String plainText) throws Exception {
MessageDigest m = MessageDigest.getInstance("MD5");
m.update(plainText.getBytes(), 0, plainText.length());
String hash = new BigInteger(1, m.digest()).toString(16);
if (hash.length() == 31) {
hash = "0" + hash;
}
return hash;
}
| public static String md5(String senha) {
MessageDigest md = null;
try {
md = MessageDigest.getInstance("MD5");
} catch (NoSuchAlgorithmException e) {
System.out.println("Ocorreu NoSuchAlgorithmException");
}
md.update(senha.getBytes());
byte[] xx = md.digest();
String n2 = null;
StringBuffer resposta = new StringBuffer();
for (int i = 0; i < xx.length; i++) {
n2 = Integer.toHexString(0XFF & ((int) (xx[i])));
if (n2.length() < 2) {
n2 = "0" + n2;
}
resposta.append(n2);
}
return resposta.toString();
}
| true |
96 | 13,521,323 | 346,058 | public static void copyFile(final String inFile, final String outFile) {
FileChannel in = null;
FileChannel out = null;
try {
in = new FileInputStream(inFile).getChannel();
out = new FileOutputStream(outFile).getChannel();
in.transferTo(0, in.size(), out);
} catch (final Exception e) {
} finally {
if (in != null) {
try {
in.close();
} catch (final Exception e) {
}
}
if (out != null) {
try {
out.close();
} catch (final Exception e) {
}
}
}
}
| private static void readAndRewrite(File inFile, File outFile) throws IOException {
ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile)));
DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis);
Dataset ds = DcmObjectFactory.getInstance().newDataset();
dcmParser.setDcmHandler(ds.getDcmHandler());
dcmParser.parseDcmFile(null, Tags.PixelData);
PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
System.out.println("reading " + inFile + "...");
pdReader.readPixelData(false);
ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile)));
DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE;
ds.writeDataset(out, dcmEncParam);
ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength());
System.out.println("writing " + outFile + "...");
PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
pdWriter.writePixelData();
out.flush();
out.close();
System.out.println("done!");
}
| true |
97 | 708,766 | 557,734 | private static void readAndRewrite(File inFile, File outFile) throws IOException {
ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile)));
DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis);
Dataset ds = DcmObjectFactory.getInstance().newDataset();
dcmParser.setDcmHandler(ds.getDcmHandler());
dcmParser.parseDcmFile(null, Tags.PixelData);
PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
System.out.println("reading " + inFile + "...");
pdReader.readPixelData(false);
ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile)));
DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE;
ds.writeDataset(out, dcmEncParam);
ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength());
System.out.println("writing " + outFile + "...");
PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR());
pdWriter.writePixelData();
out.flush();
out.close();
System.out.println("done!");
}
| public void constructAssociationView() {
String className;
String methodName;
String field;
boolean foundRead = false;
boolean foundWrite = false;
boolean classWritten = false;
try {
AssocView = new BufferedWriter(new FileWriter("InfoFiles/AssociationView.txt"));
FileInputStream fstreamPC = new FileInputStream("InfoFiles/PrincipleClassGroup.txt");
DataInputStream inPC = new DataInputStream(fstreamPC);
BufferedReader PC = new BufferedReader(new InputStreamReader(inPC));
while ((field = PC.readLine()) != null) {
className = field;
AssocView.write(className);
AssocView.newLine();
classWritten = true;
while ((methodName = PC.readLine()) != null) {
if (methodName.contentEquals("EndOfClass")) break;
AssocView.write("StartOfMethod");
AssocView.newLine();
AssocView.write(methodName);
AssocView.newLine();
for (int i = 0; i < readFileCount && foundRead == false; i++) {
if (methodName.compareTo(readArray[i]) == 0) {
foundRead = true;
for (int j = 1; readArray[i + j].compareTo("EndOfMethod") != 0; j++) {
if (readArray[i + j].indexOf(".") > 0) {
field = readArray[i + j].substring(0, readArray[i + j].indexOf("."));
if (isPrincipleClass(field) == true) {
AssocView.write(readArray[i + j]);
AssocView.newLine();
}
}
}
}
}
for (int i = 0; i < writeFileCount && foundWrite == false; i++) {
if (methodName.compareTo(writeArray[i]) == 0) {
foundWrite = true;
for (int j = 1; writeArray[i + j].compareTo("EndOfMethod") != 0; j++) {
if (writeArray[i + j].indexOf(".") > 0) {
field = writeArray[i + j].substring(0, writeArray[i + j].indexOf("."));
if (isPrincipleClass(field) == true) {
AssocView.write(writeArray[i + j]);
AssocView.newLine();
}
}
}
}
}
AssocView.write("EndOfMethod");
AssocView.newLine();
foundRead = false;
foundWrite = false;
}
if (classWritten == true) {
AssocView.write("EndOfClass");
AssocView.newLine();
classWritten = false;
}
}
PC.close();
AssocView.close();
} catch (IOException e) {
e.printStackTrace();
}
}
| true |
98 | 7,346,958 | 16,005,909 | public static String SHA1(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException {
MessageDigest md;
md = MessageDigest.getInstance("SHA-1");
byte[] sha1hash = new byte[40];
md.update(text.getBytes("iso-8859-1"), 0, text.length());
sha1hash = md.digest();
return convertToHex(sha1hash);
}
| public static byte[] hash(String identifier) {
if (function.equals("SHA-1")) {
try {
MessageDigest md = MessageDigest.getInstance(function);
md.reset();
byte[] code = md.digest(identifier.getBytes());
byte[] value = new byte[KEY_LENGTH / 8];
int shrink = code.length / value.length;
int bitCount = 1;
for (int j = 0; j < code.length * 8; j++) {
int currBit = ((code[j / 8] & (1 << (j % 8))) >> j % 8);
if (currBit == 1) bitCount++;
if (((j + 1) % shrink) == 0) {
int shrinkBit = (bitCount % 2 == 0) ? 0 : 1;
value[j / shrink / 8] |= (shrinkBit << ((j / shrink) % 8));
bitCount = 1;
}
}
return value;
} catch (Exception e) {
e.printStackTrace();
}
}
if (function.equals("CRC32")) {
CRC32 crc32 = new CRC32();
crc32.reset();
crc32.update(identifier.getBytes());
long code = crc32.getValue();
code &= (0xffffffffffffffffL >>> (64 - KEY_LENGTH));
byte[] value = new byte[KEY_LENGTH / 8];
for (int i = 0; i < value.length; i++) {
value[value.length - i - 1] = (byte) ((code >> 8 * i) & 0xff);
}
return value;
}
if (function.equals("Java")) {
int code = identifier.hashCode();
code &= (0xffffffff >>> (32 - KEY_LENGTH));
byte[] value = new byte[KEY_LENGTH / 8];
for (int i = 0; i < value.length; i++) {
value[value.length - i - 1] = (byte) ((code >> 8 * i) & 0xff);
}
return value;
}
return null;
}
| true |
99 | 8,023,601 | 10,896,362 | protected static List<Pattern> getBotPatterns() {
List<Pattern> patterns = new ArrayList<Pattern>();
try {
Enumeration<URL> urls = AbstractPustefixRequestHandler.class.getClassLoader().getResources("META-INF/org/pustefixframework/http/bot-user-agents.txt");
while (urls.hasMoreElements()) {
URL url = urls.nextElement();
InputStream in = url.openStream();
BufferedReader reader = new BufferedReader(new InputStreamReader(in, "utf8"));
String line;
while ((line = reader.readLine()) != null) {
line = line.trim();
if (!line.startsWith("#")) {
Pattern pattern = Pattern.compile(line);
patterns.add(pattern);
}
}
in.close();
}
} catch (IOException e) {
throw new RuntimeException("Error reading bot user-agent configuration", e);
}
return patterns;
}
| private HttpResponse executePutPost(HttpEntityEnclosingRequestBase request, String content) {
try {
if (LOG.isTraceEnabled()) {
LOG.trace("Content: {}", content);
}
StringEntity e = new StringEntity(content, "UTF-8");
e.setContentType("application/json");
request.setEntity(e);
return executeRequest(request);
} catch (Exception e) {
throw Exceptions.propagate(e);
}
}
| false |