public void initialize(int containerIndex, DataFormatInstance dataFormatInstance, ConfigurationDir configDir, int mode) throws MaltChainedException {

		this.optionContainerIndex = containerIndex;
		this.mode = mode;
		setConfigurationDir(configDir);
		startTime = System.currentTimeMillis();
		configLogger = initConfigLogger(getOptionValue("config", "logfile").toString(), getOptionValue("config", "logging").toString());
		registry = new ConfigurationRegistry();
		this.dataFormatInstance = dataFormatInstance;
		symbolTableHandler = dataFormatInstance.getSymbolTables();

		if (mode == SingleMalt.LEARN) {
			checkOptionDependency();
		}
		registry.put(org.maltparserx.core.symbol.SymbolTableHandler.class, getSymbolTables());
		registry.put(org.maltparserx.core.io.dataformat.DataFormatInstance.class, dataFormatInstance);
//		registry.put(org.maltparser.parser.DependencyParserConfig.class, this);
		initPropagation();
		initParsingAlgorithm(); 
		if (configLogger.isInfoEnabled()) {
			URL inputFormatURL = configDir.getInputFormatURL(); 
			URL outputFormatURL = configDir.getOutputFormatURL();
			if (inputFormatURL != null) {
				if (outputFormatURL == null || outputFormatURL.toString().equals(inputFormatURL.toString())) {
					int index = inputFormatURL.toString().indexOf('!');
					if (index == -1) {
						configLogger.info("  Data Format          : "+inputFormatURL.toString()+"\n");
					} else {
						configLogger.info("  Data Format          : "+inputFormatURL.toString().substring(index+1)+"\n");
					}
				} else {
					int indexIn = inputFormatURL.toString().indexOf('!');
					int indexOut = outputFormatURL.toString().indexOf('!');
					if (indexIn == -1) {
						configLogger.info("  Input Data Format    : "+inputFormatURL.toString()+"\n");
					} else {
						configLogger.info("  Input Data Format    : "+inputFormatURL.toString().substring(indexIn+1)+"\n");
					}
					if (indexOut == -1) {
						configLogger.info("  Output Data Format   : "+outputFormatURL.toString()+"\n");
					} else {
						configLogger.info("  Output Data Format   : "+outputFormatURL.toString().substring(indexOut+1)+"\n");
					}
				}
			}
		}
	}