public void test_01() {
		String args[] = { "-v" //
				, "-noStats" // 
				, "-i", "vcf", "-o", "vcf" //
				, "-classic" //
				, "-onlyTr", "tests/filterTranscripts_01.txt"//
				, "testHg3765Chr22" //
				, "tests/test_filter_transcripts_001.vcf" //
		};

		SnpEff cmd = new SnpEff(args);
		SnpEffCmdEff cmdEff = (SnpEffCmdEff) cmd.snpEffCmd();
		List<VcfEntry> vcfEntries = cmdEff.run(true);
		for (VcfEntry ve : vcfEntries) {
			System.out.println(ve);

			// Get effect string
			String effs = ve.getInfo(VcfEffect.VCF_INFO_EFF_NAME);
			for (String effStr : effs.split(",")) {
				VcfEffect veff = new VcfEffect(effStr);
				System.out.println("\ttrId:" + veff.getTranscriptId() + "\t" + veff);

				Assert.assertEquals("ENST00000400573", veff.getTranscriptId());
			}
		}
	}