public void test_01() {
		String args[] = { "-classic", "-ud", "0", "-noOut", "testHg19Chr1", "./tests/missing_coding_tr_tag.vcf" };

		// Run snpeff
		SnpEff cmd = new SnpEff(args);
		SnpEffCmdEff cmdEff = (SnpEffCmdEff) cmd.snpEffCmd();
		List<VcfEntry> vcfEntries = cmdEff.run(true);

		// Make sure transcript coding tags are there
		for (VcfEntry ve : vcfEntries) {
			if (verbose) System.out.println(ve.getChromosomeName() + "\t" + ve.getStart() + "\t" + ve.getInfoStr());

			for (VcfEffect veff : ve.parseEffects()) {
				if (veff.getImpact() == EffectImpact.MODERATE) {
					if (verbose) System.out.println("\t" + veff);
					Assert.assertFalse(veff.getBioType() == null || veff.getBioType().isEmpty()); // Make sure the biotype field is avaialble
				}
			}
		}
	}