public void test_01() {
		// Run
		String args[] = { "-classic", "-ud", "0", "testHg3766Chr1", "./tests/test.mnp.01.vcf" };
		SnpEff cmd = new SnpEff(args);
		SnpEffCmdEff snpeff = (SnpEffCmdEff) cmd.snpEffCmd();
		List<VcfEntry> results = snpeff.run(true);

		// Check
		Assert.assertEquals(1, results.size());
		VcfEntry result = results.get(0);

		for (VcfEffect eff : result.parseEffects()) {
			String aa = eff.getAa();
			String aaNumStr = aa.substring(1, aa.length() - 1);
			int aanum = Gpr.parseIntSafe(aaNumStr);
			System.out.println(eff.getAa() + "\t" + aaNumStr + "\t" + eff);

			if (aanum <= 0) throw new RuntimeException("Missing AA number!");
		}

	}