@Override
	public void parseArgs(String[] args) {
		for (int i = 0; i < args.length; i++) {

			// Argument starts with '-'?
			if (args[i].startsWith("-")) usage("Unknow option '" + args[i] + "'"); // Options 
			else if (genomeVer.isEmpty()) genomeVer = args[i];
			else if (proteinFile.isEmpty()) proteinFile = args[i];
			else usage("Unknow parameter '" + args[i] + "'");
		}

		// Check: Do we have all required parameters?
		if (genomeVer.isEmpty()) usage("Missing genomer_version parameter");
		if (proteinFile.isEmpty()) usage("Missing protein_file parameter");
	}