#genome
stringclasses
121 values
asm_name
stringclasses
120 values
assembly_accession
stringclasses
120 values
bioproject
stringclasses
45 values
biosample
stringclasses
120 values
wgs_master
float64
seq_rel_date
stringclasses
98 values
submitter
stringclasses
76 values
ftp_path
stringclasses
120 values
img_id
float64
637M
2.51B
gtdb_id
stringclasses
120 values
scope
stringclasses
3 values
assembly_level
stringclasses
1 value
genome_rep
stringclasses
1 value
refseq_category
stringclasses
3 values
release_type
stringclasses
2 values
taxid
float64
1.15k
681k
species_taxid
float64
7
911k
organism_name
stringclasses
120 values
infraspecific_name
stringclasses
112 values
isolate
stringclasses
1 value
superkingdom
stringclasses
2 values
phylum
stringclasses
18 values
class
stringclasses
30 values
order
stringclasses
56 values
family
stringclasses
75 values
genus
stringclasses
89 values
species
stringclasses
117 values
classified
bool
1 class
lv1_group
stringclasses
2 values
lv2_group
stringclasses
13 values
score_faa
float64
0.93
1
score_fna
float64
0.88
1
score_rrna
float64
0.1
1
score_trna
float64
0.6
1
total_length
float64
618k
9.12M
contigs
float64
1
22
gc
float64
22.5
72.2
n50
float64
616k
9.03M
l50
float64
1
1
proteins
float64
525
7.92k
protein_length
float64
172k
2.68M
coding_density
float64
74
96.9
completeness
float64
76.3
100
contamination
float64
0
4.4
strain_heterogeneity
float64
0
100
markers
float64
124
383
5s_rrna
stringclasses
2 values
16s_rrna
stringclasses
1 value
23s_rrna
stringclasses
1 value
trnas
float64
14
20
draft_quality
stringclasses
2 values
start_position
int64
0
10M
human_label
int64
0
1
autotrain_text
stringlengths
150
150
autotrain_label
class label
121 classes
G000010565
ASM1056v1
GCA_000010565.1
PRJDA19023
SAMD00060921
null
2007/05/07
Marine Biotechnology Institute Co., Ltd
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/010/565/GCA_000010565.1_ASM1056v1
640,427,128
GB_GCA_000010565.1
Monoisolate
Complete Genome
Full
na
Major
370,438
110,500
Pelotomaculum thermopropionicum SI
strain=SI
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Peptococcaceae
Pelotomaculum
Pelotomaculum thermopropionicum
true
Eubacteria
Firmicutes
0.98
1
1
1
3,025,375
1
52.96
3,025,375
1
3,001
887,464
86.415667
100
0.63
0
331
yes
yes
yes
20
high
578,890
0
ATGCTGAAAAAGAAGAAACCTGCCCGAGTCCCAGCGCCGCATAGTGAAGTGGGAATTTACAGAAAAGTTTGTTATAGTAATCACATTCACAATTTGCTTTCCCAAGCAGTTGCTGCATAGCTCGAAAACCATACTCTTGGACCTTCTCCT
73Pelotomaculum thermopropionicum SI
G000009905
ASM990v1
GCF_000009905.1
PRJNA224116
SAMD00061067
null
2004/09/02
Kitasato Institute for Life Sciences, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/905/GCF_000009905.1_ASM990v1
637,000,306
RS_GCF_000009905.1
Monoisolate
Complete Genome
Full
representative genome
Major
292,459
2,734
Symbiobacterium thermophilum IAM 14863
strain=IAM14863
null
Bacteria
Firmicutes
Clostridia
Clostridiales
Symbiobacteriaceae
Symbiobacterium
Symbiobacterium thermophilum
true
Eubacteria
Firmicutes
1
1
1
1
3,566,135
1
68.67
3,566,135
1
3,297
1,051,001
86.832243
98.02
0.03
0
347
yes
yes
yes
20
high
3,312,140
0
GCTTCTCAGAGATCCAGTCGGAGGCGGAGCATGTCCCTGCACGGGATCCCGTTCTCGTAGATCGGCTCGGGATAATGCCGGGTGAAGTAGTCCGGGTCCACGCCCACGATCCGGAAGCCGCACTTCTGGTAAAGCGCCAGCTGGTCAACG
99Symbiobacterium thermophilum IAM 14863 IAM14863
G000010285
ASM1028v1
GCF_000010285.1
PRJNA224116
SAMD00060935
null
2008/04/17
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/285/GCF_000010285.1_ASM1028v1
642,555,133
RS_GCF_000010285.1
Monoisolate
Complete Genome
Full
representative genome
Major
378,753
72,000
Kocuria rhizophila DC2201
strain=DC2201 (= NBRC 103217)
null
Bacteria
Actinobacteria
Actinobacteria
Micrococcales
Micrococcaceae
Kocuria
Kocuria rhizophila
true
Eubacteria
Actinobacteria
1
1
1
1
2,697,540
1
71.16
2,697,540
1
2,314
807,429
88.19847
98.68
0
0
324
yes
yes
yes
20
high
1,935,310
0
TCCGTGCGCTCCAGCCGGCGCAGCACACTCAGCCGCTGCCCCACGGTGTCCGAGCGCGGGGACAGCCGCTCGTGCGGCAGGGTCTCCCAGGACGGGAAGTTCGCGATCTGCTCACTCGGCAGGTAGGAGCCCAGCGCGGCCTGCAGCTCC
51Kocuria rhizophila DC2201
G000009365
ASM936v1
GCF_000009365.1
PRJNA224116
SAMEA3138202
null
2006/07/24
German Research Centre for Biotechnology
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/365/GCF_000009365.1_ASM936v1
637,000,004
RS_GCF_000009365.1
Monoisolate
Complete Genome
Full
representative genome
Major
393,595
59,754
Alcanivorax borkumensis SK2
strain=SK2
null
Bacteria
Proteobacteria
Gammaproteobacteria
Oceanospirillales
Alcanivoracaceae
Alcanivorax
Alcanivorax borkumensis
true
Eubacteria
Proteobacteria
1
1
1
1
3,120,143
1
54.73
3,120,143
1
2,820
929,045
87.73194
100
0
0
352
yes
yes
yes
20
high
1,579,240
0
AACAGTTCGCGCAGGGTGACGGGCACCCGGTAGCGACGCAGATTTTCGAAAAAACCAATAAGCATAGTCTGCCCGTGGATCGGTTAGCTTTCGCGGCGATTCATGAACGCCAGACGCTCTAAGAGCTGCACATCCGCTTCGTTCTTCAGC
1Alcanivorax borkumensis SK2
G000005825
ASM582v2
GCF_000005825.2
PRJNA224116
SAMN02603086
null
2010/12/15
Center for Genomic Sciences, Allegheny-Singer Research Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/825/GCF_000005825.2_ASM582v2
646,311,908
RS_GCF_000005825.2
Monoisolate
Complete Genome
Full
representative genome
Major
398,511
79,885
Bacillus pseudofirmus OF4
strain=OF4
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus pseudofirmus
true
Eubacteria
Firmicutes
1
0.995
1
1
4,249,248
3
39.86
3,858,997
1
4,260
1,228,222
85.144124
98.68
1.32
0
377
yes
yes
yes
20
high
2,184,520
0
ACAATTGTAAATTTAGGGCGTCTGATTGAAAAGTTTGTCATTTGTGCGTTTTCTCCTTTGTTTATGCGCGATTTTCTATAAGTTAACAAGAAGACATACAATAAAACGTATATGTACTTGTACTTTTCATTTCGAATGAGTTAACTGTTT
9Bacillus pseudofirmus OF4
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
188,100
1
CAGAAAGACCACATCTGGGGGTAGAGCACAAAACTCTCAAGAGATGAATCTTTGTAAGAGTGAGGCAGAACTATATAGCAGTTTTAGGAGATCTGTTGGTGCCCAGCAAGAGCTCCAAACGGGCTATATGCAGGGATGCAGGCTGTAGTC
120homo sapiens
G000007605
ASM760v1
GCF_000007605.1
PRJNA224116
SAMN02603993
null
2003/04/14
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/605/GCF_000007605.1_ASM760v1
637,000,066
RS_GCF_000007605.1
Monoisolate
Complete Genome
Full
representative genome
Major
227,941
83,557
Chlamydophila caviae GPIC
null
GPIC
Bacteria
Chlamydiae
Chlamydiia
Chlamydiales
Chlamydiaceae
Chlamydia
Chlamydia caviae
true
Eubacteria
Chlamydiae
1
0.992
1
1
1,181,356
2
39.19
1,173,390
1
1,003
363,158
90.588188
99.49
0
0
220
yes
yes
yes
20
high
860,340
0
AGCCGAAATAGGACATCTCGAAGCACTTCCATCGGTTTCTGGTCAGCACTAATACGAGAAACCTTATGAATAGGATAGTGTTGAATGATAGCATCGATATCTTTTTGATATGATTGCAAACGCTTTTGCAATACTTCAATACCGACCTCG
23Chlamydophila caviae GPIC
G000008625
ASM862v1
GCF_000008625.1
PRJNA57765
SAMN02603207
null
1999/12/22
DIVERSA
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/625/GCF_000008625.1_ASM862v1
637,000,010
RS_GCF_000008625.1
Monoisolate
Complete Genome
Full
reference genome
Major
224,324
63,363
Aquifex aeolicus VF5
strain=VF5
null
Bacteria
Aquificae
Aquificae
Aquificales
Aquificaceae
Aquifex
Aquifex aeolicus
true
Eubacteria
Bacteria
1
0.994
0.9
1
1,590,791
2
43.3
1,551,335
1
1,776
514,666
95.304851
98.98
1.22
75
317
yes
yes
yes
20
high
860,600
0
GCAGGAAAGAGTACCGTGATTAAGGTAATGTGCGGTATAGAAAAGCCCGATGAGGGCTTTATGAAGTGTTGCGATGAGGTTTTCTTTGATACGAAAAAGGGAGTATTTCTACCTCCTCAAAAAAGAAGGCTCGGTGTTGTTTTCCAGAGT
2Aquifex aeolicus VF5
G000009305
ASM930v1
GCF_000009305.1
PRJNA224116
SAMEA3138199
null
2006/06/28
Penn State Univ.
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/305/GCF_000009305.1_ASM930v1
637,000,130
RS_GCF_000009305.1
Monoisolate
Complete Genome
Full
representative genome
Major
382,638
212
Helicobacter acinonychis str. Sheeba
strain=Sheeba
null
Bacteria
Proteobacteria
Epsilonproteobacteria
Campylobacterales
Helicobacteraceae
Helicobacter
Helicobacter acinonychis
true
Eubacteria
Proteobacteria
1
0.994
0.9
1
1,557,588
2
38.17
1,553,927
1
1,547
470,618
89.011857
99.12
0.7
100
271
yes
yes
yes
20
high
590,850
0
TGAACACATCAAAAAGGAAAAACTCAAGATGAATATTTTGCTTATGGGGGCTACTGGAGTGGGTAAAAGCTCGCTTATTACGCTCTATTTGGTAAATAAATTGCTAAAACAGGCAAAGGAAAGTCTATCACTCAGCATCTTGAAAAATAT
46Helicobacter acinonychis str. Sheeba
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,305,400
1
ACCTCCACATGAGCTCCACAAAGGCAGAGATTTTTGTCTGTTTTGTTCACTGCTGTATTCCCCGCACCTAGAATTAGTATCTGGTATGTCATAGGCACCCAATAATTATTTGTTGGATAGATGCATATGGTAAAAACATTTAAACCATAT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,111,800
1
CCTAATGCATGTGGGGCTTAAAACCTAGATGATGGGTTGATAGGTGCTTCAAACCACCATGGAACTTGTATGCTTATGTAACAAACCTGTACGTTTGGCACATGTAAAATTAAAGTAAAATTTAAAAATTTTTACTTGTAAATTATTACA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,837,800
1
GTGGAGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACTTGAGGCCGGGAGTTCAAGACCAGCTTGGCCAACATGGTGAAACCCCGTCTCCACTAAAAATACAAAAATTAGCCAAGCATGGTGGTGTGCACC
120homo sapiens
G000007145
ASM714v1
GCF_000007145.1
PRJNA57887
SAMN02603845
null
2002/05/24
Sao Paulo state (Brazil) Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/145/GCF_000007145.1_ASM714v1
637,000,344
RS_GCF_000007145.1
Monoisolate
Complete Genome
Full
reference genome
Major
190,485
339
Xanthomonas campestris pv. campestris str. ATCC 33913
strain=ATCC 33913
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xanthomonas
Xanthomonas campestris
true
Eubacteria
Proteobacteria
1
1
0.9
1
5,076,188
1
65.07
5,076,188
1
4,292
1,472,146
85.453159
99.64
0
0
358
yes
yes
yes
20
high
1,917,500
0
GCTTTCTGCAACGGTGAGAAGGGCTTGAGTCGAAGGTGATCCGATCCCACTCTCTCCGCCAATCGTCTTGTGCGTTCGACCTCGACCGCCGCTAAGCCTCGAATAGTTAACTCCGAAGGCTCTCCTCCTGCTTCTCGACATCGCATTCGC
112Xanthomonas campestris pv. campestris str. ATCC 33913
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,393,050
1
GGAGTCTCACTCTGTTACCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCGTGCCCCTGGTTCAAGCGATTCTCCTGCCTCAGTCTCCTAAGTAGCTGGGATTACAGGCGCTGCCCACCACGCCCGGCTAATTCTTGT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,311,700
1
TTCTTGACGAATGAGTGTGTAACACAAAACATTCTTTTGGGACATCTTTATTTCTGGAAAACCTAAGACATTCTTACTTGTGAAGACCAGAAAAAGAACACATGTTGTTAGGATTGGCACAGAATTCAGTGTGACAGTCAATCTTAATGC
120homo sapiens
G000006175
ASM617v2
GCF_000006175.1
PRJNA224116
SAMN00000040
null
2010/06/03
US DOE Joint Genome Institute (JGI-PGF)
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/175/GCF_000006175.1_ASM617v2
646,564,549
RS_GCF_000006175.1
Multispecies
Complete Genome
Full
representative genome
Major
456,320
2,188
Methanococcus voltae A3
strain=A3
null
Archaea
Euryarchaeota
Methanococci
Methanococcales
Methanococcaceae
Methanococcus
Methanococcus voltae
true
Archaea
Euryarchaeota
0.97
1
1
1
1,936,387
1
28.59
1,936,387
1
1,727
526,927
80.167033
99.05
0
0
165
no
yes
yes
19
medium
1,014,000
0
CTTTTAAAAATCTTTTTAATACGATTACGTCATCAGTTATTTGACCATTCGTATTATTTTTTAAGTCTTCATTATAATTTGCATATCTTTTATACGCATTTAGTAAAAATTCGTTATGTAAAGGCGTTCTATCAACAGAGGATATTAATT
59Methanococcus voltae A3
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,324,550
1
CTGGAGCTGATGCCTGGGGGGCGAATCCTGGCTGCCTCTCCTCCCTCTGCCCCATGTCCAGGTGTTCTGAGGTCACCTGGGGCTTATTCTGCCAAAAGAGCATCTCGGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
120homo sapiens
G000010605
ASM1060v1
GCF_000010605.1
PRJNA224116
SAMD00060929
null
2008/04/08
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/605/GCF_000010605.1_ASM1060v1
641,522,653
RS_GCF_000010605.1
Monoisolate
Complete Genome
Full
representative genome
Major
455,632
1,911
Streptomyces griseus subsp. griseus NBRC 13350
strain=NBRC 13350
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces griseus
true
Eubacteria
Actinobacteria
1
1
1
1
8,545,929
1
72.23
8,545,929
1
7,113
2,547,362
87.837226
99.84
0
0
357
yes
yes
yes
20
high
5,952,830
0
CTTCCTGGTGCTGGCCCTGAGCGCCGTGCTCCACCTGGACCTGGTGACCGCGTCGGCCACCGCGAAGATCGTCAACGTGTGCACCAACGCGGGGGCGCTGGCCATGTTCGCGTACCAGGGCACCGTGCTGTGGCAGCTCGCGGCCGTGAT
96Streptomyces griseus subsp. griseus NBRC 13350
G000007905
ASM790v1
GCF_000007905.1
PRJNA224116
SAMN02604097
null
2003/06/26
Univ. Wuerzburg
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/905/GCF_000007905.1_ASM790v1
637,000,131
RS_GCF_000007905.1
Monoisolate
Complete Genome
Full
representative genome
Major
235,279
32,025
Helicobacter hepaticus ATCC 51449
strain=ATCC 51449
null
Bacteria
Proteobacteria
Epsilonproteobacteria
Campylobacterales
Helicobacteraceae
Helicobacter
Helicobacter hepaticus
true
Eubacteria
Proteobacteria
1
1
0.9
1
1,799,146
1
35.93
1,799,146
1
1,802
571,920
93.657102
99.94
0.35
0
303
yes
yes
yes
20
high
1,530,880
0
TGCTGTCCTTTTTTAATTTTAGTTTTAATCTTAAGACGTTTAGAGCTTGTATCCTCAAGCTTAAGAAGGAGATAAAAAAGTTCAAACTCGTTACATTCTTCTAATTTATCAATAGCACTCATTTCAGTAAGAATTTCATAGCCTAAAGAA
47Helicobacter hepaticus ATCC 51449
G000010425
ASM1042v1
GCF_000010425.1
PRJNA224116
SAMD00061080
null
2006/12/05
Gifu University, Life Science Research Center, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/425/GCF_000010425.1_ASM1042v1
639,633,010
RS_GCF_000010425.1
Monoisolate
Complete Genome
Full
representative genome
Major
367,928
1,680
Bifidobacterium adolescentis ATCC 15703
strain=ATCC 15703
null
Bacteria
Actinobacteria
Actinobacteria
Bifidobacteriales
Bifidobacteriaceae
Bifidobacterium
Bifidobacterium adolescentis
true
Eubacteria
Actinobacteria
1
1
1
1
2,089,645
1
59.18
2,089,645
1
1,683
614,966
86.722338
100
0
0
284
yes
yes
yes
20
high
1,851,200
0
TGACCGTCAGGCCCTTGGATGCCACGTCCTTCACGAAGTACGGATACTTGTCGTAGCCTTCGGCCGCGTTCGGAATATCCAGCGTGATGGTGTAGGCGACGGTCTGCCCAATGCTCACGCCTTCAGTGGTGGTAATCGTATCGGCCGTCT
12Bifidobacterium adolescentis ATCC 15703
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,284,050
1
CTACCGCTATCTACTACAAACTTCAAAGAGGAACCAGGAGTATGGGAGGAACATGAAAGTGGACAAGGAACGTGACCATTGAAGCACCACAGGGAGGGGTTTAGACCTCTGGATGACTGTGGGCAGGCCTGGATGATATCCAGCCTTCCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,991,700
1
GAATCTGTACATTTATCCCAGAGGCGACTTCTACTGACATGAACTACTGAAATACATTTTTGAAATATCTCTTCCCTTCTAATAAAATGCTTGTCCTATTTCATTTACTAAAGGGTTTTAAAAATACATTTCTCTTTAGAGCTTGTTAAA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,722,050
1
TACCCACGAGCTGGGGTCTTTTCTACTCTTGGCAGCGAGGGGTGGCTGAAATCAGATGTGCCCTGGAGGCCAGGCCTCAGGACGCTCCTCCCCCAGGTGCACGCTCAGCGGACAAGGTGGACAACCCGAACCACGCTTGCTCAGAAATCC
120homo sapiens
G000006745
ASM674v1
GCF_000006745.1
PRJNA57623
SAMN02603969
null
2001/01/09
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/745/GCF_000006745.1_ASM674v1
637,000,333
RS_GCF_000006745.1
Monoisolate
Complete Genome
Full
reference genome
Major
243,277
666
Vibrio cholerae O1 biovar El Tor str. N16961
strain=N16961
null
Bacteria
Proteobacteria
Gammaproteobacteria
Vibrionales
Vibrionaceae
Vibrio
Vibrio cholerae
true
Eubacteria
Proteobacteria
1
0.998
0.9
1
4,033,464
2
47.49
2,961,149
1
3,594
1,184,587
86.533164
99.86
0.03
0
360
yes
yes
yes
20
high
707,980
0
AGCAGACGTTAAAACTAGCAGATATTTTAGCTTTGGGCTTTATGCTGTTCGCCTTCTTCTTAGGCGCAGGCAATATCATTTTTCCACCTCTCGCTGGCCAGTTGGCGGGTGAGAACATTACTCCTGCCATGTTCGGCTTTTTGCTGACCG
107Vibrio cholerae O1 biovar El Tor str. N16961
G000007865
ASM786v1
GCF_000007865.1
PRJNA224116
SAMN02604086
null
2004/01/30
Univ. Minnesota
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/865/GCF_000007865.1_ASM786v1
637,000,168
RS_GCF_000007865.1
Monoisolate
Complete Genome
Full
representative genome
Major
262,316
1,764
Mycobacterium avium subsp. paratuberculosis K-10
strain=K-10
null
Bacteria
Actinobacteria
Actinobacteria
Corynebacteriales
Mycobacteriaceae
Mycobacterium
Mycobacterium avium
true
Eubacteria
Actinobacteria
1
1
1
1
4,829,781
1
69.3
4,829,781
1
4,544
1,497,326
91.345322
99.28
0.33
0
336
yes
yes
yes
20
high
2,709,070
0
TGCGGTCAACCGCGGTGAGCTAACCGGCCGGAATCCGCCATTCGGCGGCCTCGTGCTGCTGCCGCCAGAATTCGGCGAAACGCCCGCCCGCGGCACGCAATTCGTCGACCGTTCCGTCCTCGACCACCCGTCCGTCGTCCAGGAACAGGA
65Mycobacterium avium subsp. paratuberculosis K-10
G000007525
ASM752v1
GCF_000007525.1
PRJNA57939
SAMN02603675
null
2005/01/21
Nestle Research Center, Switzerland
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/525/GCF_000007525.1_ASM752v1
637,000,031
RS_GCF_000007525.1
Monoisolate
Complete Genome
Full
reference genome
Major
206,672
216,816
Bifidobacterium longum NCC2705
strain=NCC2705
null
Bacteria
Actinobacteria
Actinobacteria
Bifidobacteriales
Bifidobacteriaceae
Bifidobacterium
Bifidobacterium longum
true
Eubacteria
Actinobacteria
1
0.996
0.9
1
2,260,266
2
60.13
2,256,640
1
1,833
667,063
86.967994
100
0
0
289
yes
yes
yes
20
high
824,720
0
AGCTGGTGGCCCGCATAGCGGAATTGTATGGGCGCAGGCCCGAGGAAATCGACCCCGACTGGGGCCTGTGACAACACTGCGGGCCGTGTCACTTGTAATAAGGTAGTGGCACGGCCCGCAGCTATATCGCCGCCGAAACATCATCAGACT
13Bifidobacterium longum NCC2705
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,178,200
1
TCTCGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCAGGTGCCACCATGCCCAGCTAAGTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTCATGAGACCTATTTTTCTTTTAGGACCAGTCAA
120homo sapiens
G000008545
ASM854v1
GCF_000008545.1
PRJNA57723
SAMN02603986
null
2001/01/09
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/545/GCF_000008545.1_ASM854v1
637,000,321
RS_GCF_000008545.1
Monoisolate
Complete Genome
Full
reference genome
Major
243,274
2,336
Thermotoga maritima MSB8
strain=MSB8
null
Bacteria
Thermotogae
Thermotogae
Thermotogales
Thermotogaceae
Thermotoga
Thermotoga maritima
true
Eubacteria
Bacteria
1
1
0.9
1
1,860,725
1
46.25
1,860,725
1
1,866
602,696
95.430706
100
1.79
100
312
yes
yes
yes
20
high
1,738,750
0
GTGGCGACATACTGAAAATGACCTACATAGCTAACTCAGGCCATCCTGGAGGATCCATGTCTTCGATCGATCTTTATCTTACCGTCTTCAAGTACGCAAAACTCAGACCCGTCGATGATCCTGCAAGAGACAGAATCGTGATCAGCCATG
103Thermotoga maritima MSB8 ASM854v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,797,700
1
CCACTGTGGGCCAGAAGCTAAAACTTCTCAGGGTTCACACAGAACTGGGAACCACTGTGAGCCAGAAGCTAAGACTTCTCAGAGCTCACCCAGAACTGGCAGATGTTCAAGTTCAAACTAGTCGGTGTGAAGAGATGCTAATGAACACCT
120homo sapiens
G000006725
ASM672v1
GCF_000006725.1
PRJNA224116
SAMN02603773
null
2004/06/04
Sao Paulo state (Brazil) Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/725/GCF_000006725.1_ASM672v1
637,000,348
RS_GCF_000006725.1
Monoisolate
Complete Genome
Full
representative genome
Major
160,492
2,371
Xylella fastidiosa 9a5c
null
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xylella
Xylella fastidiosa
true
Eubacteria
Proteobacteria
0.98
0.993
0.9
1
2,731,750
3
52.62
2,679,306
1
2,664
765,931
82.59299
99.59
0.18
0
325
yes
yes
yes
20
high
1,421,030
0
AAAGGCCTTTGAGGATTTCCTTGCCGGCGACGGAGGCATGGAGCGTGTCGATCTTCAGCATAGTCATGATGTCTATAGGATGAGCTTGTGTCCGCTGATACGTTTTTATGGGACTGGGGCGGTTTGGATGCGTTGTTGGAGTGGTTGGGC
114Xylella fastidiosa 9a5c
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,339,250
1
GCTGGTTTCAAACTCCTGACCTCAAGTGATCCACCCACCTTGGCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCAGCCCAGTCCCAACCTTTTCATTTCCTGTACACTTTAAAAGTGTGGCTTCCTTTCACCAATAAAA
120homo sapiens
G000009825
ASM982v1
GCF_000009825.1
PRJNA224116
SAMD00061074
null
2004/12/30
Kao Corporation, Biological Science Laboratories, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/825/GCF_000009825.1_ASM982v1
637,000,019
RS_GCF_000009825.1
Monoisolate
Complete Genome
Full
representative genome
Major
66,692
79,880
Bacillus clausii KSM-K16
strain=KSM-K16
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus clausii
true
Eubacteria
Firmicutes
1
1
1
1
4,303,871
1
44.75
4,303,871
1
4,304
1,270,194
86.940919
98.67
0.33
0
373
yes
yes
yes
20
high
3,323,580
0
CCAGCCTACACGATTGGCCAATTCGGGATTGCTTACAATCCTGAGCAAACGAAAGGCCCAATCGAAAGCTGGAGCGACTTATGGGATGACTCTCTTGCAGGCAATTTAACGATTCCTTCTATTACATCGACAACAGGGCCAATGTTTTTA
8Bacillus clausii KSM-K16
G000008185
ASM818v1
GCF_000008185.1
PRJNA57583
SAMN02603967
null
2004/02/03
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/185/GCF_000008185.1_ASM818v1
637,000,327
RS_GCF_000008185.1
Monoisolate
Complete Genome
Full
reference genome
Major
243,275
158
Treponema denticola ATCC 35405
strain=ATCC 35405
null
Bacteria
Spirochaetes
Spirochaetia
Spirochaetales
Spirochaetaceae
Treponema
Treponema denticola
true
Eubacteria
Spirochaetes
1
1
1
1
2,843,201
1
37.87
2,843,201
1
2,578
885,778
91.799314
100
0
0
281
yes
yes
yes
20
high
309,400
0
ACACTTCTTCGTTGTAGAAAATATTTTTTACAATTTGTCCTATCGCCAAAACTCCATCAATCACTTTTGCTTTTTTTTCAGTGACCGATAAACTTAATATGCTTCCCCATGATGCACTGAAAATAAATAATTTATTGTTCGGAAATTCTT
104Treponema denticola ATCC 35405
G000010605
ASM1060v1
GCF_000010605.1
PRJNA224116
SAMD00060929
null
2008/04/08
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/605/GCF_000010605.1_ASM1060v1
641,522,653
RS_GCF_000010605.1
Monoisolate
Complete Genome
Full
representative genome
Major
455,632
1,911
Streptomyces griseus subsp. griseus NBRC 13350
strain=NBRC 13350
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces griseus
true
Eubacteria
Actinobacteria
1
1
1
1
8,545,929
1
72.23
8,545,929
1
7,113
2,547,362
87.837226
99.84
0
0
357
yes
yes
yes
20
high
241,280
0
GGCCCTTCGACAACCCTCGTGGGAGGGCCCTCTGACAGCCCGCGCGACCGGATCCGCCACGCGACTTTCGCAGCGTGGAGCCGAGGGGCGGTGTGCCACTGCGCGGCACCCGCCCCTCGGCTCCGGTCGGCGGAGCGTCAGCCGACCTGC
96Streptomyces griseus subsp. griseus NBRC 13350
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,006,700
1
GAAATGTAAAATAGCTGTAAGCTGTACAGTGGTATCATCATGGGGAGTAATATTTTAGATACATGGCTCTTACCTAACACTATTCAAACAAGAGGTTCAATAGAGCCAACAATGCCGGTAGTCACTACACATCTGCAATTGTCTTACTAC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,574,450
1
TCTGGTCCCAGCTCCTAATGAGAACGCGGCGCCTTGGCGTAAGTGTCCCCAACACATGCAGGAGTGAAGGAGAGGCAGGAGCATGTGGTACTTAAACAGGGACCTAGGTCTGTGCCGCTGGGTCTGCATCCTCATGAGACCTTGGACCAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,565,450
1
CTTCTCGCCAGCTGTCGGCCCGAGGCTGCCCTCAGTTCCTGCCCCAAGGGCCTCTCCAACACCACAGCTTGCTTCATCAGAGCCAGGAGGGACAGTCTCTAGCAAGACAGAAGTGACAGTCTTGCCATTACCTTTGCCGTGTTCTGCTGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,338,200
1
GCATTTCCTAATAAGCCTGCCTCAGCAGCTGACCATCGTGGGGAGTGTAGTTTGTTTCCCTTGCCAGGGAAATGCCCAGTGGCTGAGAGCCTGGCTGTGCTGCTGCCTGGAAGGTTGAGGGTTTTAACCCACAGAAACTGGTAATGGCTA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,958,550
1
TGTGGCTTGTCCTGTTAGAGACTCTAACTCCAGCCCTGATCCCACCAAGAGTCTGTTACATTCATAAGCTTCTCAATCTGGGATAAAGAGAAATCGGAGACATTTGTCCACCTTAGCTTTAAGAAGAAATGTCTCAAGTGCACACGCAGC
120homo sapiens
G000007205
ASM720v1
GCF_000007205.1
PRJNA224116
SAMN02602979
null
2003/07/25
ALTANA Pharma
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/205/GCF_000007205.1_ASM720v1
637,000,071
RS_GCF_000007205.1
Monoisolate
Complete Genome
Full
na
Major
182,082
83,558
Chlamydophila pneumoniae TW-183
strain=TW-183
null
Bacteria
Chlamydiae
Chlamydiia
Chlamydiales
Chlamydiaceae
Chlamydia
Chlamydia pneumoniae
true
Eubacteria
Chlamydiae
1
1
1
1
1,225,935
1
40.58
1,225,935
1
1,055
372,698
89.583869
99.49
0
0
219
yes
yes
yes
20
high
964,990
0
AGTTGGGAACACGGAGTGACTATAGGAGCGGGGATGTCATCGACGACAACTGCAGCTATTGTTGGTCAGTTAGGTAAACTCCGCCACGATCCTTTTGCCATGCTTCCTTTCTGTGGGTATAACATGGCATATTACTTCCAGCATTGGCTT
25Chlamydophila pneumoniae TW-183
G000009985
ASM998v1
GCF_000009985.1
PRJNA224116
SAMD00061077
null
2005/12/01
Tokyo University of Agriculture and Technology, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/985/GCF_000009985.1_ASM998v1
637,000,155
RS_GCF_000009985.1
Monoisolate
Complete Genome
Full
representative genome
Major
342,108
84,159
Magnetospirillum magneticum AMB-1
strain=AMB-1
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhodospirillales
Rhodospirillaceae
Magnetospirillum
Magnetospirillum magneticum
true
Eubacteria
Proteobacteria
1
1
0.9
1
4,967,148
1
65.09
4,967,148
1
4,628
1,522,305
90.298759
99
0
0
360
yes
yes
yes
20
high
1,183,910
0
GGAGCTTGCCGCCCAGACCCGCGCCGCCGAGGCCCAGCGCGATCTGCTCGAAGCCATTCCCACCCCGCTGACCGTATCGCGCCTGTCCGACCATTCGCTGCTCCACGTCAACCAGCCCGCCTCCCTGCTGCTGGGGCTGCTCGACAGCTA
56Magnetospirillum magneticum AMB-1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
510,150
1
CCCACACTCTGTCCCACCTCACTCCGAGCTGGGGGTTCGGGGACCACAGGTCCCACCTGCACAGGTTGCATCTGGGGAATGGGCCTGTGGCAGAAAATGTGCGGCGCGGGGGGGGGGGTCCCAACCAGGCAGCCCCAACCTGGACTCTCC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,305,200
1
AACAACCTAAGACTTATGAATGGATAGACAAAGTATGGCCCATCCATATAATGGAATATTACTCAGCCATCACGGAAGGAAATTCTGATGTGTCTTGGATGAGCTTGGATGAGCCTTGAAGACATTATGCTGAATGGAAGAAGCCAGTCA
120homo sapiens
G000007905
ASM790v1
GCF_000007905.1
PRJNA224116
SAMN02604097
null
2003/06/26
Univ. Wuerzburg
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/905/GCF_000007905.1_ASM790v1
637,000,131
RS_GCF_000007905.1
Monoisolate
Complete Genome
Full
representative genome
Major
235,279
32,025
Helicobacter hepaticus ATCC 51449
strain=ATCC 51449
null
Bacteria
Proteobacteria
Epsilonproteobacteria
Campylobacterales
Helicobacteraceae
Helicobacter
Helicobacter hepaticus
true
Eubacteria
Proteobacteria
1
1
0.9
1
1,799,146
1
35.93
1,799,146
1
1,802
571,920
93.657102
99.94
0.35
0
303
yes
yes
yes
20
high
239,330
0
ACAGGCTCGCCACCAAATTGTCCATATTCAGAAGAATAAATACGTTTATATAATGTAGCTGTTGTAATATCTGGATTTGCCTCAAAATCCTCTAAAGCCTCTTGTTTAGTTACATCAAACAAATTAATTTTTATATTTTCTTGAAAATTA
47Helicobacter hepaticus ATCC 51449
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
6,750,450
1
GAGGCAGTGCAGGAAGGGCCGGGTTCTATGAGAGGACCTTAGGCAGCAGGAATACTCCATGACAGCAGAGATGCTGGGGCCTTTTCCCCAGAGCCTTATTCTTTTTTTTTTTTTTAATCTTTAGACAGAACTCTCATTCACAGCATTTAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
165,300
1
CAGCCCCCCATCTCTGCATATACCAAAATCCATGCTTACTCACGTTTTGCTGTCACCCCTCTGGAATCCACGTATACGAAAATTCCAAATATTAGTTGGGCATAGTGGCAAGCACCTGTAGTCTCAGCCACGTGGGAGGTTGAGGTGGGA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,269,100
1
GTGTGATCCCAGCTCACTGAAGCCTTGAGCTCCCTGAGCTCAAGCAATCCTCCCACTTCAGCCTCCCAAGCAGCTGGGACTACAGGTGCGTACCACCACACCTGGCTACTTTTTGTATTTTTGTAGAAATGGGGTTTCCCCGGCCAGGCG
120homo sapiens
G000009705
ASM970v1
GCF_000009705.1
PRJNA224116
SAMD00061094
null
2004/05/11
Kazusa
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/705/GCF_000009705.1_ASM970v1
637,000,199
RS_GCF_000009705.1
Monoisolate
Complete Genome
Full
representative genome
Major
103,690
103,690
Nostoc sp. PCC 7120
null
null
Bacteria
Cyanobacteria
null
Nostocales
Nostocaceae
Nostoc
Nostoc sp. PCC 7120
true
Eubacteria
Cyanobacteria
1
0.992
0.9
1
7,211,789
7
41.27
6,413,771
1
6,159
2,024,679
82.716938
99.19
0
0
360
yes
yes
yes
20
high
4,778,930
0
AGCAAAAACCACCTGTTTTAGTGGTGGAGGTTGCTTCCCCCAAACATTTGGGAGAATATAGCAGTAAAAAAGAACTCTATGCCCAAGAATTAGGCATTTTGTACTACGTTGTGTACAATCCTTTTCGACGTAAGAAATCTCCCCTAGAAG
70Nostoc sp. PCC 7120 ASM970v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,515,900
1
TTGGGCGAGAATATTCTGTTTCGACAGATTGGCCGTGTTGTACCCATCCTGCTGGAGTGTCAGGTGGGACTCACAAAATTAATTCCGTTTAATTGACAGTGAGTTTTGAAAGGTTGTGTGGCTCCCTCCTAGCATGGACTGCTTACTTTC
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,379,900
1
CACACAGCCAGAAGGGGCGGGTGCAAGGCTGGGAAGCACAGGGCGGTGCTGGGCAGGATCCCAGGGGTTGGGTGCCACTGTCAGGGGCCCCAAGTCCCTCTGGCCCCTCGCACACAAGCATGGCCACCGAGGCTGGAAGGGCAGCAGCGT
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,521,050
1
CAAAGGGCCAGCCTTGTGGACAGCCACACCTCTGCCAGGACCCCAGGTTGTGCAGGTCAGCAGGGATGGGCCCACTTGTATTTCCCAGGACTGGCGCCTGTGGTCTCCTAGTTCAGCGAGGAGGGAACCCTTCCCGCGCAGGGTGGTCCT
120homo sapiens
G000009065
ASM906v1
GCF_000009065.1
PRJNA57621
SAMEA1705942
null
2003/05/06
Sanger Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/065/GCF_000009065.1_ASM906v1
637,000,351
RS_GCF_000009065.1
Monoisolate
Complete Genome
Full
reference genome
Major
214,092
632
Yersinia pestis CO92
strain=CO92
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Yersiniaceae
Yersinia
Yersinia pestis
true
Eubacteria
Proteobacteria
1
0.994
1
1
4,829,855
4
47.64
4,653,728
1
4,298
1,371,586
83.669593
99.82
0
0
372
yes
yes
yes
20
high
424,710
0
TGATGACATCGACGGCAGTGACGATGAGCTACCGGCTGATTTACCGTATTGCTCCGCGGTGCTTTTTACCGAATCCAATAAACTGTTGGCGTGAGCAGCACCGGTCACCAACGGGGCAGAAAAAGCCAGTGCTAAGAATAGGCGATGAAT
116Yersinia pestis CO92 ASM906v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,058,900
1
CGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,852,950
1
GTTCTTAGGTTCATCTGTTCTCTTCCTACAGGAAAGCGTGGTATTTTCCAAAGCCACAGGATAAGTCTTTTATAGAAGTGACAGGAGACTCTGTCTCTGCTATATCACTCCCTGTCACCTTGGAATAAAACCCATCTCTTAGCAAAAAAC
120homo sapiens
G000010085
ASM1008v1
GCF_000010085.1
PRJNA224116
SAMD00061079
null
2006/01/10
Kitasato Institute for Life Sciences, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/085/GCF_000010085.1_ASM1008v1
637,000,270
RS_GCF_000010085.1
Monoisolate
Complete Genome
Full
representative genome
Major
343,509
63,612
Sodalis glossinidius str. 'morsitans'
strain=morsitans
null
Bacteria
Proteobacteria
Gammaproteobacteria
Enterobacterales
Pectobacteriaceae
Sodalis
Sodalis glossinidius
true
Eubacteria
Proteobacteria
1
0.993
1
1
4,292,502
4
54.5
4,171,146
1
5,742
1,142,020
78.310831
100
0
0
357
yes
yes
yes
20
high
2,976,480
0
AGTCCGGTAAAATGCATGCCTGCGGCCACGACGGCCACATGACCATGCTTCTGGGTGCGGCGCGCTATCTGGCCGCCACACGCCGCTTTAACGGTACCCTGCATGTCATTTTCCAGCCGGCGGAGGAGCGCGGTTTCGACAGCGGTGCGC
87Sodalis glossinidius str. 'morsitans' morsitans
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,607,400
1
AAGTGAGCTAAACAGGGATTTTCTCTTTTTGTAATGATGGAACTGGAAACTGGAGTCAATTTTTCTTGCTAAAAATAGAAAATCTGGGAAAATATTAACAGAAGAGTTTGAACTAACAATACAGTGAGGAATTATGGAGAATAAAATTTA
120homo sapiens
G000007205
ASM720v1
GCF_000007205.1
PRJNA224116
SAMN02602979
null
2003/07/25
ALTANA Pharma
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/205/GCF_000007205.1_ASM720v1
637,000,071
RS_GCF_000007205.1
Monoisolate
Complete Genome
Full
na
Major
182,082
83,558
Chlamydophila pneumoniae TW-183
strain=TW-183
null
Bacteria
Chlamydiae
Chlamydiia
Chlamydiales
Chlamydiaceae
Chlamydia
Chlamydia pneumoniae
true
Eubacteria
Chlamydiae
1
1
1
1
1,225,935
1
40.58
1,225,935
1
1,055
372,698
89.583869
99.49
0
0
219
yes
yes
yes
20
high
557,570
0
AATCCATCAAAGGAGACGTTGCTTGTAAAGCATCTCCGTAGCGAATCAATTTCAAAATATCAGGAGAGTAATACTGCTCTTCTATCAAAAAGAGTAGAAGTTCCTCGGCGTGCGCAGTGACTTCAGGACTAAGATCCACTCCCAGTAAGT
25Chlamydophila pneumoniae TW-183
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
632,700
1
ACATGGACGCGGCCTCCTATCAGCCCCCGGACACGGCCTCCGATCAGCCCCCGGCTGCTGCCCTCCGTGCTGTCTGGGGCAAGGGACAGGAGAGGACCCTTCCTCAGAGTGGGCCTGGACCACCCGGCCACCGGCAGGGCCCACCCAGGA
120homo sapiens
G000007805
ASM780v1
GCF_000007805.1
PRJNA57967
SAMN02604017
null
2003/03/05
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/805/GCF_000007805.1_ASM780v1
2,508,501,074
RS_GCF_000007805.1
Multiisolate
Complete Genome
Full
reference genome
Major
223,283
251,701
[Pseudomonas syringae] pv. tomato str. DC3000
strain=DC3000
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
Pseudomonas syringae group genomosp. 3
true
Eubacteria
Proteobacteria
1
0.997
0.9
1
6,538,260
3
58.34
6,397,126
1
5,862
1,948,843
87.825109
100
0.22
0
381
yes
yes
yes
20
high
2,042,170
0
GTGTGATATCAAGCCCGGATTTGCACCGTGGGCCACCACCGCAGTGGGCCCTGGGCCAAGTTCTGCACCCAGCGTACGCAACTGATCACGCAGCGCATAGTTAGAACGTTGCGACGCTGTCAGGCTGGGTGAGTTGTACGTGTTTCCCCA
119[Pseudomonas syringae] pv. tomato str. DC3000
G000009765
ASM976v2
GCF_000009765.2
PRJNA224116
SAMD00061088
null
2016/03/24
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/765/GCF_000009765.2_ASM976v2
637,000,304
RS_GCF_000009765.2
Monoisolate
Complete Genome
Full
representative genome
Minor
227,882
33,903
Streptomyces avermitilis MA-4680 = NBRC 14893
strain=MA-4680
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces avermitilis
true
Eubacteria
Actinobacteria
1
0.999
1
1
9,119,895
2
70.7
9,025,608
1
7,915
2,675,970
86.456522
99.89
0.79
0
356
yes
yes
yes
20
high
8,211,580
0
GCCCTTCGTCCCCGCGACCGCCTTCCGTACCTGGTCGCCCCGCGCCTGATCCGCGACGACGACCAGCGGATCGCCGGTGCCCGCCGGGAAGTACCGCGCCGACACCTCCTGGCCGACGATGGAGTCGGGCCTGCCGGTGAAGGCGTCCGC
95Streptomyces avermitilis MA-4680 = NBRC 14893 MA-4680 ASM976v2
G000007825
ASM782v1
GCF_000007825.1
PRJNA57975
SAMN02603340
null
2004/07/06
INRA
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/825/GCF_000007825.1_ASM782v1
637,000,017
RS_GCF_000007825.1
Monoisolate
Complete Genome
Full
reference genome
Major
226,900
1,396
Bacillus cereus ATCC 14579
strain=ATCC 14579
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus cereus
true
Eubacteria
Firmicutes
1
0.998
1
1
5,427,083
2
35.29
5,411,809
1
5,541
1,546,426
83.933929
98.18
0.58
18.18
383
yes
yes
yes
20
high
306,540
0
TCACGTAGATCGTTTCACAAACGATGTAGAACATGCAATTTGTAGTATGGAATACATTTACTTTGCACGACCAGATTCTAATATTGCAGGCGTTAACGTTCATGCAGCACGTAAGAATATGGGGAAACGTTTAGCGGCAGAAGCTCCTAT
7Bacillus cereus ATCC 14579
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,152,800
1
ATCGTGTAGCAGCACCCCACACACACAGGTGAGCATCTGATAGCCTGGAGCAGCACCCACACCCCCAGGCGAGCATCCGACAACCTGGAGCAGCACCCACAACCCTAGGTGAGCATCTGATGGTCTGGAGCAGCACCCACAACCACAGGT
120homo sapiens
G000007025
ASM702v1
GCF_000007025.1
PRJNA224116
SAMN02603141
null
2002/11/25
CNRS
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/025/GCF_000007025.1_ASM702v1
637,000,243
RS_GCF_000007025.1
Monoisolate
Complete Genome
Full
representative genome
Major
272,944
781
Rickettsia conorii str. Malish 7
strain=Malish 7
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rickettsiales
Rickettsiaceae
Rickettsia
Rickettsia conorii
true
Eubacteria
Proteobacteria
1
1
0.9
1
1,268,755
1
32.44
1,268,755
1
1,435
347,621
80.686027
99.46
0.33
0
218
yes
yes
yes
20
high
1,264,250
0
GAGCAGAAAGAATACCAGCTTATAAGGCGAGGTAGATATGTAGAATTTAATTTGCTATATGACCGTGGTACTAAATTCGGCTTAATGACCGATGGAAATGTCGAAGCAATATTAATGTCATTGCCACCTGAAGTAAAGTTTAATTGACTT
82Rickettsia conorii str. Malish 7
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
2,252,850
1
ACCCCCAGGCGAGCATCTGACTGCATGTAACAGCACCCACACCCCCAGGTAAGCATCTGACAGCCTGGAACAGCACCCTGCACCCCCAGGTGTGCACGTGACAGCCTGCAACAACACCCACACCCCCAGGAGAGCATCTGACTGCATGTA
120homo sapiens
G000007645
ASM764v1
GCF_000007645.1
PRJNA57861
SAMN02603126
null
2002/12/20
Chinese National HGC, Shanghai
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/645/GCF_000007645.1_ASM764v1
637,000,281
RS_GCF_000007645.1
Monoisolate
Complete Genome
Full
reference genome
Major
176,280
1,282
Staphylococcus epidermidis ATCC 12228
strain=ATCC 12228
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Staphylococcus
Staphylococcus epidermidis
true
Eubacteria
Firmicutes
1
0.977
0.9
1
2,564,615
7
32.05
2,499,279
1
2,354
721,937
82.93198
99.81
0
0
345
yes
yes
yes
20
high
786,370
0
GTTAAAGATGGAGAAATTGTAGCTGCACCAGTGTTAGCTTTATCATTAAGCTTTGACCATAGACAAATCGATGGTGCTACTGGACAAAATGCTATGAATCACATTAAACGCTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAA
88Staphylococcus epidermidis ATCC 12228 ASM764v1
G000010585
ASM1058v1
GCF_000010585.1
PRJNA224116
SAMD00060930
null
2009/01/28
Juntendo University School of Medicine
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/585/GCF_000010585.1_ASM1058v1
643,348,562
RS_GCF_000010585.1
Monoisolate
Complete Genome
Full
representative genome
Major
458,233
69,966
Macrococcus caseolyticus JCSC5402
strain=JCSC5402
null
Bacteria
Firmicutes
Bacilli
Bacillales
Staphylococcaceae
Macrococcus
Macrococcus caseolyticus
true
Eubacteria
Firmicutes
1
0.965
1
1
2,219,737
9
36.56
2,102,324
1
2,352
677,409
89.896055
96.13
1.1
0
339
yes
yes
yes
20
high
234,650
0
TAATAATGATTTTGAACTTGAGAACCCTTCTATTGTAATAACATATTTAGAAGATGTCGATTATAGAAGAAAAGATATTATTAATTACAATTTAATTGACGAACTAATAAATCAACAAAAGGGAAGACAACTATTTAATATTTTAAAAGT
55Macrococcus caseolyticus JCSC5402
G000007825
ASM782v1
GCF_000007825.1
PRJNA57975
SAMN02603340
null
2004/07/06
INRA
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/825/GCF_000007825.1_ASM782v1
637,000,017
RS_GCF_000007825.1
Monoisolate
Complete Genome
Full
reference genome
Major
226,900
1,396
Bacillus cereus ATCC 14579
strain=ATCC 14579
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus cereus
true
Eubacteria
Firmicutes
1
0.998
1
1
5,427,083
2
35.29
5,411,809
1
5,541
1,546,426
83.933929
98.18
0.58
18.18
383
yes
yes
yes
20
high
3,622,580
0
ATGCTGGAACGAATCCTGGGAAATCGAAAGCATTTTTCAAACCTTCATCGAAAGCAACTTGGCGAATGTTATTTCCATAATCAAATGTAATTGCGCCTTTTTCTTGCATCGCAAGCATCGCTTCCACATGTTTTGTCATACTTTCTTTTG
7Bacillus cereus ATCC 14579
G000006725
ASM672v1
GCF_000006725.1
PRJNA224116
SAMN02603773
null
2004/06/04
Sao Paulo state (Brazil) Consortium
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/725/GCF_000006725.1_ASM672v1
637,000,348
RS_GCF_000006725.1
Monoisolate
Complete Genome
Full
representative genome
Major
160,492
2,371
Xylella fastidiosa 9a5c
null
null
Bacteria
Proteobacteria
Gammaproteobacteria
Xanthomonadales
Xanthomonadaceae
Xylella
Xylella fastidiosa
true
Eubacteria
Proteobacteria
0.98
0.993
0.9
1
2,731,750
3
52.62
2,679,306
1
2,664
765,931
82.59299
99.59
0.18
0
325
yes
yes
yes
20
high
374,920
0
GATGTGATTGCCGACTTGCGTTTGCCACGTGATGGTTATTGTGTATCCAGTAAGGTGTTCTTTGGGCCTGTGAAGGAGCCACGTCCGACGCAGTGTGGGCTTTCACGCAAGCATGTCCATGATGCTTGCCATGCTGCACTGAAGCGTTTG
114Xylella fastidiosa 9a5c
G000007845
ASM784v1
GCF_000007845.1
PRJNA57909
SAMN02603432
null
2003/04/30
J. Craig Venter Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/845/GCF_000007845.1_ASM784v1
637,000,014
RS_GCF_000007845.1
Monoisolate
Complete Genome
Full
reference genome
Major
198,094
1,392
Bacillus anthracis str. Ames
strain=Ames
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus anthracis
true
Eubacteria
Firmicutes
1
1
1
1
5,227,293
1
35.38
5,227,293
1
5,474
1,495,110
84.244541
99.23
0.15
0
381
yes
yes
yes
20
high
2,781,610
0
TTCTCATAAATAACGAAGGGATGGTGGAAAAACTTGAAAACTTGGCTCTATCACGTTAATGACTTTCTTCTGCTGCTCCTCCTTTCGTTATTAACAGAAAGGGACGAACTTATTGCTATTGCTATATTTTTAACAACAGGCTATATTGGA
5Bacillus anthracis str. Ames
G000010605
ASM1060v1
GCF_000010605.1
PRJNA224116
SAMD00060929
null
2008/04/08
The University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/605/GCF_000010605.1_ASM1060v1
641,522,653
RS_GCF_000010605.1
Monoisolate
Complete Genome
Full
representative genome
Major
455,632
1,911
Streptomyces griseus subsp. griseus NBRC 13350
strain=NBRC 13350
null
Bacteria
Actinobacteria
Actinobacteria
Streptomycetales
Streptomycetaceae
Streptomyces
Streptomyces griseus
true
Eubacteria
Actinobacteria
1
1
1
1
8,545,929
1
72.23
8,545,929
1
7,113
2,547,362
87.837226
99.84
0
0
357
yes
yes
yes
20
high
8,288,670
0
GCTCCCCGTGCGTGGCCCCGCGCTCGGCGAGCAGCGGGAGGGACGCCATGGAGGTGGCGCTGGGCGCGCTCAGCCGCAGGTCCTGGTGGCCGCGCGCGGCGAGGAGTTCGCGGGCCTTGAGCGCCAGGTCGAAGGTGGCCGTGGCCGCGG
96Streptomyces griseus subsp. griseus NBRC 13350
G000007345
ASM734v1
GCF_000007345.1
PRJNA224116
SAMN03081414
null
2002/04/03
Broad Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/345/GCF_000007345.1_ASM734v1
638,154,508
RS_GCF_000007345.1
Monoisolate
Complete Genome
Full
representative genome
Major
188,937
2,214
Methanosarcina acetivorans C2A
strain=C2A
null
Archaea
Euryarchaeota
Methanomicrobia
Methanosarcinales
Methanosarcinaceae
Methanosarcina
Methanosarcina acetivorans
true
Archaea
Euryarchaeota
0.98
1
0.8
0.9
5,751,492
1
42.68
5,751,492
1
4,884
1,470,904
75.340086
99.84
0.03
0
229
no
yes
yes
18
medium
117,260
0
ATCTCAATATGCAACTTTTTTCTCTCATACCTGCGGCAAACCCCGACAGATATCGATTTAGCTTTGTGGGGTCTCATTCAAGGCATTTCTTTCATTGTATATGGACATTTTAATTATAATTTCAATATATATCTATTATATATTCAATAG
61Methanosarcina acetivorans C2A
G000011005
ASM1100v1
GCA_000011005.1
PRJDA20361
SAMD00060931
null
2009/12/25
NITE
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/011/005/GCA_000011005.1_ASM1100v1
2,505,679,075
GB_GCA_000011005.1
Monoisolate
Complete Genome
Full
na
Major
304,371
570,267
Methanocella paludicola SANAE
strain=SANAE
null
Archaea
Euryarchaeota
Methanomicrobia
Methanocellales
Methanocellaceae
Methanocella
Methanocella paludicola
true
Archaea
Euryarchaeota
1
1
0.8
0.9
2,957,635
1
54.92
2,957,635
1
3,055
877,570
87.405714
100
0.65
0
198
no
yes
yes
17
medium
1,578,850
0
CCTTCTCGGCGAAGCAGGACGCCGGCAGAACTACGTCGGCCAGCTGAGCCGTCTCCGTCAGGAAGATATCCTGTACGACGAGGAACTCGAGGTTCTTTAACGCCTTCTCCACGTGGTGGAGGTCGGGGTCAGAGACCATCGGGTTCTCAC
58Methanocella paludicola SANAE
G000010165
ASM1016v1
GCF_000010165.1
PRJNA224116
SAMD00060942
null
2009/04/01
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/165/GCF_000010165.1_ASM1016v1
643,692,011
RS_GCF_000010165.1
Monoisolate
Complete Genome
Full
representative genome
Major
358,681
1,393
Brevibacillus brevis NBRC 100599
strain=NBRC 100599 (= 47)
null
Bacteria
Firmicutes
Bacilli
Bacillales
Paenibacillaceae
Brevibacillus
Brevibacillus brevis
true
Eubacteria
Firmicutes
1
1
1
1
6,296,436
1
47.27
6,296,436
1
5,917
1,875,522
87.757979
99.73
0.27
0
381
yes
yes
yes
20
high
3,536,260
0
AACGACTTGCGACTACATACTTCCAGAGTATTATATATTTTACGCCTTTCACTTGCGACTTGCTTTGCATCTGTCATTGCATCAAATGAAAGGTTAAGTTACAATGTGTAAATATTTGCCATTTTATTGAAATTTAGTATAATTACCTTT
15Brevibacillus brevis NBRC 100599
G000008805
ASM880v1
GCF_000008805.1
PRJNA57817
SAMN02603997
null
2005/05/26
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/805/GCF_000008805.1_ASM880v1
637,000,189
RS_GCF_000008805.1
Monoisolate
Complete Genome
Full
reference genome
Major
122,586
487
Neisseria meningitidis MC58
strain=MC58
null
Bacteria
Proteobacteria
Betaproteobacteria
Neisseriales
Neisseriaceae
Neisseria
Neisseria meningitidis
true
Eubacteria
Proteobacteria
1
1
0.9
1
2,272,360
1
51.53
2,272,360
1
2,107
632,964
82.059313
99.75
1.9
80
322
yes
yes
yes
20
high
1,796,600
0
GCCTTGTCCTGATTTTTGTTAATCCACTATATTTCAGGATATAAAAACCGCCTGCTTCGCCAACCCGATGTTCAAACGGGTTGCGAAGCAGGTTTCATGGGTTTTCAAAGTTGAGATGTAGTCTCAATTTCATGGGTTTCATTATACATA
67Neisseria meningitidis MC58
G000010665
ASM1066v1
GCF_000010665.1
PRJNA224116
SAMD00060954
null
2009/06/11
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/665/GCF_000010665.1_ASM1066v1
644,736,352
RS_GCF_000010665.1
Monoisolate
Complete Genome
Full
representative genome
Major
573,370
184,917
Desulfovibrio magneticus RS-1
strain=RS-1
null
Bacteria
Proteobacteria
Deltaproteobacteria
Desulfovibrionales
Desulfovibrionaceae
Desulfovibrio
Desulfovibrio magneticus
true
Eubacteria
Proteobacteria
0.99
0.996
1
1
5,315,620
3
62.67
5,248,049
1
4,555
1,546,858
85.744052
100
0
0
357
yes
yes
yes
20
high
833,040
0
ACGTCGCGCTGGAAAATGTGGTGGGCTTTCAGGGCCTGGAGCACATGGTGCTGCAGGGTGATGTTGGCCGGATCGAACAGGTTGTCGATCTTGAGCACGTCTTCCATGCGGGCCACGCCCTCGTCGGTGAGGAGCACGGTGCGGGCCTTT
36Desulfovibrio magneticus RS-1
G000010665
ASM1066v1
GCF_000010665.1
PRJNA224116
SAMD00060954
null
2009/06/11
National Institute of Technology and Evaluation
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/665/GCF_000010665.1_ASM1066v1
644,736,352
RS_GCF_000010665.1
Monoisolate
Complete Genome
Full
representative genome
Major
573,370
184,917
Desulfovibrio magneticus RS-1
strain=RS-1
null
Bacteria
Proteobacteria
Deltaproteobacteria
Desulfovibrionales
Desulfovibrionaceae
Desulfovibrio
Desulfovibrio magneticus
true
Eubacteria
Proteobacteria
0.99
0.996
1
1
5,315,620
3
62.67
5,248,049
1
4,555
1,546,858
85.744052
100
0
0
357
yes
yes
yes
20
high
1,838,850
0
GGCGCTCCAGCTGGGCGTTTAAGTACCGGTCCATGTCCTCCCGGGATTGGACGAGCCAGGAGGGCAGCTTTGTGGCCACCTTGACGCGCTGCCGGTAGCCGTCTTTGAGGGCCTTGCCGAGCAGGGGTTCGCTTGCGCCGCCGTGGTAGG
36Desulfovibrio magneticus RS-1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,632,600
1
TTACAGGTTAGTTCAGGATCTGTGCCTTATCAACCAAATTGTTTTGCCTATCCACCCTGTGGTGCCCAACCCGTACACTCTTGTCCTCAATCCCTTCCTCCACAACTCACTATTCCATGCTTGATCTTAAAGATGCTTTTTTCACTATTC
120homo sapiens
G000007305
ASM730v1
GCF_000007305.1
PRJNA224116
SAMN02604284
null
2002/02/27
Utah Genome Center
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/305/GCF_000007305.1_ASM730v1
638,154,515
RS_GCF_000007305.1
Monoisolate
Complete Genome
Full
representative genome
Major
186,497
2,261
Pyrococcus furiosus DSM 3638
strain=DSM 3638
null
Archaea
Euryarchaeota
Thermococci
Thermococcales
Thermococcaceae
Pyrococcus
Pyrococcus furiosus
true
Archaea
Euryarchaeota
1
1
0.9
0.9
1,908,256
1
40.77
1,908,256
1
2,102
594,193
91.722127
99.5
0
0
195
yes
yes
yes
19
high
1,445,210
0
AACTCCGTAGATAAACTTTCCTTTGTCTATCCAAACTTTAAACCTCTGAGCAATTAATGTCCTTGGATCTATTCCTCCTATTGGAGCAACTCTGAGAAATCCATTCTTTTCTATATGCGTGACCATCAGTCCAATTTGATCCATATGGGC
80Pyrococcus furiosus DSM 3638
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,307,450
1
ATATGTCTGTCTAGGTCAGACCAGGCCACTCCTTTGGCTTAACCCCCAGAGGCTTCCCTTTGCACCTGCAAAAAAAAAAAAAAAAAAAAAATCCCATGGCACTTACTGTGATGTTCAAGGCCTGGCCCAGTCTGGCCTCACCTAATCCCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,953,100
1
GCTTATAATCCAGTATTTTGGGAGGATCCCTTGAGCCCACGAGTTCAAGGCTGCAGTGAGCAGTGATCATACTACTGCACTCTGGCCTGGGTAACAGAGAGAGACCCTGTCTCTTAAACAGAAAAAAACAAAAAGATCACTGCAATAAAA
120homo sapiens
G000007565
ASM756v2
GCF_000007565.2
PRJNA57843
SAMN02603999
null
2016/02/26
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/565/GCF_000007565.2_ASM756v2
637,000,222
RS_GCF_000007565.2
Multiisolate
Complete Genome
Full
reference genome
Major
160,488
303
Pseudomonas putida KT2440
strain=KT2440
null
Bacteria
Proteobacteria
Gammaproteobacteria
Pseudomonadales
Pseudomonadaceae
Pseudomonas
Pseudomonas putida
true
Eubacteria
Proteobacteria
1
1
0.9
1
6,181,873
1
61.52
6,181,873
1
5,584
1,861,131
88.706707
99.97
1.2
0
381
yes
yes
yes
20
high
2,331,030
0
GAAATGGCGCCGCACGTCAGGGCTGCCAATGCGCTCGGCGGCCTGCAGGCCATGGCGACGGGCGTGGGGCAACGTCTGGAGGAGTGGCGCGCCTTGTCCGGCCATGTGGTCGAGGCCTGTGAACGTGACCCTCAGGAGTCAGGGGCAGTG
78Pseudomonas putida KT2440
G000009985
ASM998v1
GCF_000009985.1
PRJNA224116
SAMD00061077
null
2005/12/01
Tokyo University of Agriculture and Technology, Japan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/985/GCF_000009985.1_ASM998v1
637,000,155
RS_GCF_000009985.1
Monoisolate
Complete Genome
Full
representative genome
Major
342,108
84,159
Magnetospirillum magneticum AMB-1
strain=AMB-1
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhodospirillales
Rhodospirillaceae
Magnetospirillum
Magnetospirillum magneticum
true
Eubacteria
Proteobacteria
1
1
0.9
1
4,967,148
1
65.09
4,967,148
1
4,628
1,522,305
90.298759
99
0
0
360
yes
yes
yes
20
high
468,520
0
GGTATCCACCTTGGCGACCACCCGGGCGACGGCGTCCGCCGCCAGCCCCGGCAGCAGCGTGCCGATCGCGGCCGCTCCGAAGTCCCGCCAGACCAAGCCCGCCGAGCTGTAGGGCTCGCCATTGGGGCGCAACGGTTTGTCGCGCATGTG
56Magnetospirillum magneticum AMB-1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
5,851,500
1
AGGTTAGCAGGGGCCAGGGCGCCTCTCGGCAGGGCTAGGAGCAGGTGGACCCCAGAGTGGAGCCCACATCACAGGCACATCCAAGGGGGAAAGGGATTACTTGAGGCAGGTCCTCCACCACTGCTGAGGGTGGAGGCAAAACAGAGAAAG
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
24,750
1
ACTCACACGGGTGCCATCTCAGCAGCTCACGGTGTAGAAACTGCGACACTCACGTGGGTGCCATCTCAGCAGCTCACGGTGTGGAAACTGCGACACTCACGTGGGTGCCATCTCAGCAGCTCACGGTGTGGAAACTGCGACACTCACGTG
120homo sapiens
G000008685
ASM868v2
GCF_000008685.2
PRJNA57581
SAMN02603966
null
2011/11/09
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/685/GCF_000008685.2_ASM868v2
637,000,036
RS_GCF_000008685.2
Monoisolate
Complete Genome
Full
reference genome
Major
224,326
139
Borrelia burgdorferi B31
strain=B31
null
Bacteria
Spirochaetes
Spirochaetia
Spirochaetales
Borreliaceae
Borreliella
Borreliella burgdorferi
true
Eubacteria
Spirochaetes
1
0.879
1
0.9
1,521,208
22
28.18
910,724
1
1,511
441,681
85.52361
100
0
0
178
yes
yes
yes
20
high
417,820
0
AGGAAGAAGATTCAACCACCTGTATCGCAAAGCTTAAAGAAATAAAAGAAAAGAAAAATTATGACTTATTTTCAATGGGCATTGGAATAGGAGATCCTATTGCAAATATTATGATTACAATTCCTTATATAAATATTGATTTTGGATATG
14Borrelia burgdorferi B31
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
4,541,400
1
GTCTTCTCTCATTTATCAGTCACTCGGATTTGCTCTTCTGTGGGTTACCTGCTGATATACTTGGGCCATTTCAGTTGGGTGTTCTTCTTTTACTTGTTTTTCAGTGATTTTTATATTACAATTGTTCATCATTTGCCTGCTGTATGCATT
120homo sapiens
G000007985
ASM798v2
GCF_000007985.2
PRJNA57743
SAMN02603989
null
2012/07/31
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/985/GCF_000007985.2_ASM798v2
637,000,120
RS_GCF_000007985.2
Monoisolate
Complete Genome
Full
reference genome
Major
243,231
35,554
Geobacter sulfurreducens PCA
strain=PCA
null
Bacteria
Proteobacteria
Deltaproteobacteria
Desulfuromonadales
Geobacteraceae
Geobacter
Geobacter sulfurreducens
true
Eubacteria
Proteobacteria
1
1
1
1
3,814,128
1
60.94
3,814,128
1
3,417
1,176,369
90.878544
99.35
0
0
363
yes
yes
yes
20
high
3,146,000
0
CCGGCAGGAAGGTCTACTACGCCAGTCACGTCCGTCGTACGGAAGTAGAACTGCGGACGGTACCCGTTGAAGAACGGCGTGTGACGGCCACCTTCTTCCTTCGTCAGGATGTACGCCTCGGCCTTGAACTTGGTGTGCGGAGTGATGCTC
43Geobacter sulfurreducens PCA
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
1,882,500
1
CCAAGCAGGCGTCGCATCCGGCCTGGGTTTGGCTTCTGCCAGCTCCTGGGCCTGCACTGGGAGGGGCTGAGCGTGGGGGCATGGGGGTGGGCAGGAGCCTGGGGACGTTCATTCACAGCACCGAGCTCTGTGGGTACTCTTTCATTCACC
120homo sapiens
G000008325
ASM832v1
GCF_000008325.1
PRJNA224116
SAMN02603968
null
2005/05/18
TIGR
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/325/GCF_000008325.1_ASM832v1
637,000,166
RS_GCF_000008325.1
Monoisolate
Complete Genome
Full
representative genome
Major
243,233
414
Methylococcus capsulatus str. Bath
strain=Bath
null
Bacteria
Proteobacteria
Gammaproteobacteria
Methylococcales
Methylococcaceae
Methylococcus
Methylococcus capsulatus
true
Eubacteria
Proteobacteria
1
1
1
1
3,304,561
1
63.58
3,304,561
1
3,046
1,020,877
91.024466
99.2
0
0
357
yes
yes
yes
20
high
143,780
0
GTAGTCATCCAGGCTCTCGCCCTTGTAGGCGAACACCGGGATGCCGTCGGCGGCGATGGCGGCGGCGGCGTGGTCCTGGGTGGAGAAGATGTTGCAGGATGCCCAGCGCACTTCGGCGCCGAGGGCCACCAAGGTCTCGATCAGCACCGC
63Methylococcus capsulatus str. Bath
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,614,350
1
ATTATTTTGGATATATACCCAGAAGTGGGATCACTGGATCACATGATAATTCTATTTTTAATTTTTTTTAGGAATTACCGTTCTGTTTTCCACAGTAGCTACGCCATTTTACGTTCTCACCAACAGTATATAAGAGTTTCAATTTCTCCA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
3,120,450
1
GGACGGGAACAGCCTGAGGGCCCCTCTGTGGCCCCTGGACGGGGAGGCTGTCAGACAGGAGGCCTTCACCTGGACCTGGCCCTCGCCCACCCACCCCTGCCAGCAAGGCCAGGGAGTGCTGGGTGGGGGCGCCAGCGACTCCCCTCCTCC
120homo sapiens
G000007345
ASM734v1
GCF_000007345.1
PRJNA224116
SAMN03081414
null
2002/04/03
Broad Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/007/345/GCF_000007345.1_ASM734v1
638,154,508
RS_GCF_000007345.1
Monoisolate
Complete Genome
Full
representative genome
Major
188,937
2,214
Methanosarcina acetivorans C2A
strain=C2A
null
Archaea
Euryarchaeota
Methanomicrobia
Methanosarcinales
Methanosarcinaceae
Methanosarcina
Methanosarcina acetivorans
true
Archaea
Euryarchaeota
0.98
1
0.8
0.9
5,751,492
1
42.68
5,751,492
1
4,884
1,470,904
75.340086
99.84
0.03
0
229
no
yes
yes
18
medium
4,394,000
0
CGTTTTCTCCTGCAATATTGCCGGTGTTTTCTACTTTCACCCGGATCGTAACTGCATCTCCGCCCTCAACAGAGGCAGGCTCGATTGAGAAGTCCGAATATTCAAAAACGGCTTTATCTTCGGAAACCTCGACAATGGTTTCGCCTTCTT
61Methanosarcina acetivorans C2A
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
8,010,150
1
TCTACTAAGAAGACTCAGCTTGAGGACCCACAATGAGTCTAACTCTGGCCACAGGGAGAAAAGCTCCTGGCACATTCGTGAACCTAGACTGTTTATGCTGCTTTTCTCAATAATTATTTGTCAGCTGAGAAAGACCTATGTCTGGCCACA
120homo sapiens
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
7,356,450
1
AACTGTGCTATGCATATAAAATGGAACTCCGCAGCAGTGTAGAAGTATGAGACAACTGTCTAGCCACTGATAAAGTTCTCCAAGGGATATGGTAAAGTGAAAAAGGTGTGTTGATGGTTAATGTACGTATGTGCCTTTGGGTAAAGATGG
120homo sapiens
G000010525
ASM1052v1
GCF_000010525.1
PRJNA224116
SAMD00060925
null
2007/10/16
University of Tokyo
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/010/525/GCF_000010525.1_ASM1052v1
641,228,476
RS_GCF_000010525.1
Monoisolate
Complete Genome
Full
representative genome
Major
438,753
7
Azorhizobium caulinodans ORS 571
strain=ORS 571
null
Bacteria
Proteobacteria
Alphaproteobacteria
Rhizobiales
Xanthobacteraceae
Azorhizobium
Azorhizobium caulinodans
true
Eubacteria
Proteobacteria
1
1
0.9
1
5,369,772
1
67.32
5,369,772
1
4,810
1,620,542
88.922714
100
0
0
358
yes
yes
yes
20
high
4,702,750
0
GGCGGGCCGCGCCACGATTCGCGCGGCCGTGTTGCACCGCAACTTGGTGGCTTCCGCCGGTGGGCACCACCGACGCTGCGGCATTGCTCGGGCTTGCGCCATGCGCCCGGCGCTGGAGCGGTAAGCCGTTCAGGCCCCTGCCGTTTTCGC
4Azorhizobium caulinodans ORS 571
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
51,900
1
GGTAGCCTTTTTGGTGCCTCCTGACAATCACAGAAGCAGGCTGGGATCCTACCCAGGTATGGCAGAGCAAGTGAGCCCACCTAGGTGGGAATCCTTACCCTCCTAATCCTGCAGGTTCACTTCACAATCTTGTGTAGACCTTAAACCGTT
120homo sapiens
G000009745
ASM974v1
GCF_000009745.1
PRJNA224116
SAMD00061075
null
2003/10/03
NHRI, Taiwan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/745/GCF_000009745.1_ASM974v1
637,000,337
RS_GCF_000009745.1
Multiisolate
Complete Genome
Full
representative genome
Major
196,600
672
Vibrio vulnificus YJ016
strain=YJ016
null
Bacteria
Proteobacteria
Gammaproteobacteria
Vibrionales
Vibrionaceae
Vibrio
Vibrio vulnificus
true
Eubacteria
Proteobacteria
1
0.996
1
1
5,260,086
3
46.68
3,354,505
1
4,639
1,553,759
87.03525
100
0.14
0
369
yes
yes
yes
20
high
284,960
0
CTGCTGTATCCATTCTCTATCCCAATCGTTAGCACTTGCCCATAACACGTCACTTATCACCTTGTTGGTTCATCATGCCGTCTATTTTCAGTCGTCGGGTGCAGACGCGGTGGTGAATTAGATGAAAGAAATGGCCATCAAACTAACCAG
108Vibrio vulnificus YJ016
G000009745
ASM974v1
GCF_000009745.1
PRJNA224116
SAMD00061075
null
2003/10/03
NHRI, Taiwan
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/745/GCF_000009745.1_ASM974v1
637,000,337
RS_GCF_000009745.1
Multiisolate
Complete Genome
Full
representative genome
Major
196,600
672
Vibrio vulnificus YJ016
strain=YJ016
null
Bacteria
Proteobacteria
Gammaproteobacteria
Vibrionales
Vibrionaceae
Vibrio
Vibrio vulnificus
true
Eubacteria
Proteobacteria
1
0.996
1
1
5,260,086
3
46.68
3,354,505
1
4,639
1,553,759
87.03525
100
0.14
0
369
yes
yes
yes
20
high
4,816,760
0
GCCACCGCAGTATTGGCCAACACCATGGATCACTCCAAGATGGACCATTCTAAGATGGATCATGGAAAAGTGGACCACAGTAAAATGGATCACGGCAACATGAAAGAAGGCAGCATGAAGATGGACCACTCGAACATGATGGGAATGGAA
108Vibrio vulnificus YJ016
G000008165
ASM816v1
GCF_000008165.1
PRJNA58091
SAMN02598266
null
2004/06/24
DOE Joint Genome Institute
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/165/GCF_000008165.1_ASM816v1
637,000,015
RS_GCF_000008165.1
Monoisolate
Complete Genome
Full
reference genome
Major
260,799
1,392
Bacillus anthracis str. Sterne
strain=Sterne
null
Bacteria
Firmicutes
Bacilli
Bacillales
Bacillaceae
Bacillus
Bacillus anthracis
true
Eubacteria
Firmicutes
1
1
1
1
5,228,663
1
35.38
5,228,663
1
5,471
1,495,624
84.251844
99.23
0.15
0
381
yes
yes
yes
20
high
3,504,410
0
CTTTTATTTAAGTTACTAGTTCCTGTAGCTAGTAGTTCGATTTGACTAAATGTATCAGTAGGGAGAATTGACTGATTCTCAATGAATGCTCTCATTCTTTTAAATTCTTCAATAAACCTCACTTTAATTTTCATCGTTTCAATCGTGTTA
6Bacillus anthracis str. Sterne ASM816v1
human
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
null
9,593,550
1
GGGGTTTCATTAAAATCACTTCTCTCCTAACATTAACCACACTGCATTGAATTATTTATTCACTTGGTGTAGCTCCTACTGGGATATGAACTCCTGGCTATTCTTGTTTACTGCTTTTTATCCAAGTTCTGGCACAGGGCTTGGCACAGA
120homo sapiens