--- license: cc-by-4.0 library_name: scvi-tools tags: - biology - genomics - single-cell - model_cls_name:SCVI - scvi_version:1.0.4 - anndata_version:0.9.1 - modality:rna - annotated:True --- # Description mmColon_single_cell_85K.mouse.h5ad # Model properties Many model properties are in the model tags. Some more are listed below. **model_init_params**: ```json { "n_hidden": 128, "n_latent": 10, "n_layers": 1, "dropout_rate": 0.1, "dispersion": "gene", "gene_likelihood": "nb", "latent_distribution": "normal" } ``` **model_setup_anndata_args**: ```json { "layer": null, "batch_key": null, "labels_key": null, "size_factor_key": "total_counts", "categorical_covariate_keys": null, "continuous_covariate_keys": null } ``` **Training curve**: ![image/png](https://cdn-uploads.huggingface.co/production/uploads/6541ec57982a653159bbcd4a/1FIGFEUxg8K406QfaZOzP.png) **Embedding plots**: ![image/png](https://cdn-uploads.huggingface.co/production/uploads/6541ec57982a653159bbcd4a/HMisJ4Kq0RrwZMxxAl75A.png) **model_summary_stats**: |  Summary Stat Key  | Value | |--------------------------|-------| |  n_batch  |  1  | |  n_cells  | 84612 | | n_extra_categorical_covs |  0  | | n_extra_continuous_covs  |  0  | |  n_labels  |  1  | |  n_latent_qzm  |  10  | |  n_latent_qzv  |  10  | |  n_vars  | 18416 | **model_data_registry**: |  Registry Key  |  scvi-tools Location  | |-------------------|--------------------------------------| |  X  |  adata.X  | |  batch  |  adata.obs['_scvi_batch']  | |  labels  |  adata.obs['_scvi_labels']  | |  latent_qzm  |  adata.obsm['_scvi_latent_qzm']  | |  latent_qzv  |  adata.obsm['_scvi_latent_qzv']  | |  minify_type  | adata.uns['_scvi_adata_minify_type'] | | observed_lib_size | adata.obs['_scvi_observed_lib_size'] | |  size_factor  |  adata.obs['total_counts']  | **model_parent_module**: scvi.model **data_is_minified**: True # Training data This is an optional link to where the training data is stored if it is too large to host on the huggingface Model hub. Training data url: N/A # Training code This is an optional link to the code used to train the model. Training code url: N/A # References 10.6084/m9.figshare.24670038.v1