from datasets import load_dataset from transformers import TrainingArguments from span_marker import SpanMarkerModel, Trainer def main() -> None: # Load the dataset, ensure "tokens" and "ner_tags" columns, and get a list of labels dataset = load_dataset("ncbi_disease").filter(lambda sample: sample["tokens"]) labels = dataset["train"].features["ner_tags"].feature.names # Initialize a SpanMarker model using a pretrained BERT-style encoder model_name = "bert-base-cased" model = SpanMarkerModel.from_pretrained( model_name, labels=labels, # SpanMarker hyperparameters: model_max_length=256, marker_max_length=128, entity_max_length=8, ) # Prepare the 🤗 transformers training arguments args = TrainingArguments( output_dir=f"models/span_marker_bert_base_cased_disease", run_name=f"bb_disease", # Training Hyperparameters: learning_rate=5e-5, per_device_train_batch_size=32, per_device_eval_batch_size=32, num_train_epochs=3, weight_decay=0.01, warmup_ratio=0.1, bf16=True, # Replace `bf16` with `fp16` if your hardware can't use bf16. # Other Training parameters logging_first_step=True, logging_steps=50, evaluation_strategy="steps", save_strategy="steps", eval_steps=300, save_total_limit=2, dataloader_num_workers=2, ) # Initialize the trainer using our model, training args & dataset, and train trainer = Trainer( model=model, args=args, train_dataset=dataset["train"], eval_dataset=dataset["validation"], ) trainer.train() trainer.save_model(f"models/span_marker_bert_base_cased_disease/checkpoint-final") # Compute & save the metrics on the test set metrics = trainer.evaluate(dataset["test"], metric_key_prefix="test") trainer.save_metrics("test", metrics) trainer.create_model_card() if __name__ == "__main__": main()