---
language: en
license: apache-2.0
tags:
- token-classification
- NER
- Biomedical
- Chemicals
datasets:
- BC5CDR-chemicals
- BC4CHEMD
- tner/bc5cdr
- commanderstrife/jnlpba
- bc2gm_corpus
- drAbreu/bc4chemd_ner
- linnaeus
- chintagunta85/ncbi_disease
model-index:
- name: sschet/biobert_chemical_ner
  results:
  - task:
      type: token-classification
      name: Token Classification
    dataset:
      name: drAbreu/bc4chemd_ner
      type: drAbreu/bc4chemd_ner
      config: bc4chemd
      split: test
    metrics:
    - type: accuracy
      value: 0.9505454039628846
      name: Accuracy
      verified: true
      verifyToken: eyJhbGciOiJFZERTQSIsInR5cCI6IkpXVCJ9.eyJoYXNoIjoiYjJiMzExZjJmZTA5MWMxODM1YTM3ODc0NjY5ZWJlNDRmMjBhOWYwNGE2ZjQ4MTAxOTdhMDkwZDAxOTI1MmE5YiIsInZlcnNpb24iOjF9.wFgqZw0KCgTbfR1BxSClee-7r-gJHqZdk4ohqoGEJ33kQEwSrG30Og1xsZyKCbPiCQfs_2_1T_ZJO6QbiAlyDA
    - type: precision
      value: 0.3525598807584318
      name: Precision
      verified: true
      verifyToken: eyJhbGciOiJFZERTQSIsInR5cCI6IkpXVCJ9.eyJoYXNoIjoiZTg0OWY2M2E4ODQwNjNiZDE5MGY4ODViYzI0ZTY1YTE0NzBhMmRhNzYxNzYwN2Y5NWRjMWQ0YjQ5ZWJjYjlhMCIsInZlcnNpb24iOjF9.MslrcG8olNcabp-pReQbq2N4gK7gOKwOtYb3ZtYIooJcl8MjX5M5Lyy_XEVoOiSD_FvP2jjyOfxcTTT3RjFiDA
    - type: recall
      value: 0.14230150402238545
      name: Recall
      verified: true
      verifyToken: eyJhbGciOiJFZERTQSIsInR5cCI6IkpXVCJ9.eyJoYXNoIjoiMWI3MGQzNjQ2N2ViN2QyODY2MDZjZjljOTc2N2JhNTFmOWU2ODY4MjFhZDE4MjBjZGVlZjc1ZWI3NDcwNjhiYSIsInZlcnNpb24iOjF9.YUz3zGkrGV7cA5q4YCg3NLX1Uyw11_XB3MaHVmVag5dUEHgU_i3o4NW7ZF19pxVLfsz3yiSRjr4VK2VaswziBQ
    - type: auc
      value: NaN
      name: AUC
      verified: true
      verifyToken: eyJhbGciOiJFZERTQSIsInR5cCI6IkpXVCJ9.eyJoYXNoIjoiZTlmZDg4NDM4YzJiODJlOTNmNTc0NzNmNWUzMzc4MWFkY2VkOTI5NmVhMGI0ZDQzZWQ4Mzg3OWYwZTY2OTE0ZCIsInZlcnNpb24iOjF9.Yi7IpASPVwopN1liwZ1RR39B-THlJDRBiN4Qo-FMGtThLTknrHvO2SWtDaJN39rQF5cw7kh5zg0u_ULw9VbLBg
    - type: f1
      value: 0.2027630477253698
      name: F1
      verified: true
      verifyToken: eyJhbGciOiJFZERTQSIsInR5cCI6IkpXVCJ9.eyJoYXNoIjoiNjBjMDQxNjhmNTMzYjJmYTIyMzhlNjEyYTk0ZjNkYzcyZTE1OTM3ZDMyNzhhNGJhYTA4YTc3MmE0MGU1MzczNCIsInZlcnNpb24iOjF9.Q3M94eWFKYnE38ohHRuNE99PYul_k0XtMVUc1HMICcagvqoG_SbWLERdm7XU-TFgAFrdOTgKqSGAPBoO9qzOCA
    - type: loss
      value: 0.45500192046165466
      name: loss
      verified: true
      verifyToken: eyJhbGciOiJFZERTQSIsInR5cCI6IkpXVCJ9.eyJoYXNoIjoiN2M0Yjk4MTIyYmYzNzIyNjdmNTZlMzVlNDMwNGFmZDZjNGVhY2Q3NTc1NTQ0NzgyMzdkMTI0NGJiMjAwZjQzYyIsInZlcnNpb24iOjF9.cyDohUTdqPYDc-QVz3fZ6AT6OagMk_UpPB9g4GBVm5n4bCPCYFk74HZYr72kwIfrcF3rEXa4nEBbXg0LjzXpDw
---

BioBERT model fine-tuned in NER task with BC5CDR-chemicals and BC4CHEMD corpus.

This was fine-tuned in order to use it in a BioNER/BioNEN system which is available at: https://github.com/librairy/bio-ner