| method=scGPT | |
| echo '++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++' | |
| echo '+++++ Integration_accuracy real: '$method' +++++' | |
| echo '++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++' | |
| for data_name in 10x-Multiome-Pbmc10k | |
| do | |
| echo "Evaluation with $data_name" | |
| python integration_accuracy.py \ | |
| -d ../../data/download/$data_name/$data_name-small-RNA_uni.h5ad ../../data/download/$data_name/$data_name-small-ATAC_uni.h5ad \ | |
| -l ../../results/$method-output/$data_name/$data_name-small-rna.csv ../../results/$method-output/$data_name/$data_name-small-atac.csv \ | |
| -o ../../results/$method-output/$data_name/$data_name-cell_integration_info.yaml | |
| echo "==================" | |
| done | |