# Copyright 2020 The HuggingFace Team. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. import json import os from functools import partial from multiprocessing import Pool, cpu_count import numpy as np from tqdm import tqdm from ...models.bert.tokenization_bert import whitespace_tokenize from ...tokenization_utils_base import BatchEncoding, PreTrainedTokenizerBase, TruncationStrategy from ...utils import is_tf_available, is_torch_available, logging from .utils import DataProcessor # Store the tokenizers which insert 2 separators tokens MULTI_SEP_TOKENS_TOKENIZERS_SET = {"roberta", "camembert", "bart", "mpnet"} if is_torch_available(): import torch from torch.utils.data import TensorDataset if is_tf_available(): import tensorflow as tf logger = logging.get_logger(__name__) def _improve_answer_span(doc_tokens, input_start, input_end, tokenizer, orig_answer_text): """Returns tokenized answer spans that better match the annotated answer.""" tok_answer_text = " ".join(tokenizer.tokenize(orig_answer_text)) for new_start in range(input_start, input_end + 1): for new_end in range(input_end, new_start - 1, -1): text_span = " ".join(doc_tokens[new_start : (new_end + 1)]) if text_span == tok_answer_text: return (new_start, new_end) return (input_start, input_end) def _check_is_max_context(doc_spans, cur_span_index, position): """Check if this is the 'max context' doc span for the token.""" best_score = None best_span_index = None for span_index, doc_span in enumerate(doc_spans): end = doc_span.start + doc_span.length - 1 if position < doc_span.start: continue if position > end: continue num_left_context = position - doc_span.start num_right_context = end - position score = min(num_left_context, num_right_context) + 0.01 * doc_span.length if best_score is None or score > best_score: best_score = score best_span_index = span_index return cur_span_index == best_span_index def _new_check_is_max_context(doc_spans, cur_span_index, position): """Check if this is the 'max context' doc span for the token.""" # if len(doc_spans) == 1: # return True best_score = None best_span_index = None for span_index, doc_span in enumerate(doc_spans): end = doc_span["start"] + doc_span["length"] - 1 if position < doc_span["start"]: continue if position > end: continue num_left_context = position - doc_span["start"] num_right_context = end - position score = min(num_left_context, num_right_context) + 0.01 * doc_span["length"] if best_score is None or score > best_score: best_score = score best_span_index = span_index return cur_span_index == best_span_index def _is_whitespace(c): if c == " " or c == "\t" or c == "\r" or c == "\n" or ord(c) == 0x202F: return True return False def squad_convert_example_to_features( example, max_seq_length, doc_stride, max_query_length, padding_strategy, is_training ): features = [] if is_training and not example.is_impossible: # Get start and end position start_position = example.start_position end_position = example.end_position # If the answer cannot be found in the text, then skip this example. actual_text = " ".join(example.doc_tokens[start_position : (end_position + 1)]) cleaned_answer_text = " ".join(whitespace_tokenize(example.answer_text)) if actual_text.find(cleaned_answer_text) == -1: logger.warning(f"Could not find answer: '{actual_text}' vs. '{cleaned_answer_text}'") return [] tok_to_orig_index = [] orig_to_tok_index = [] all_doc_tokens = [] for i, token in enumerate(example.doc_tokens): orig_to_tok_index.append(len(all_doc_tokens)) if tokenizer.__class__.__name__ in [ "RobertaTokenizer", "LongformerTokenizer", "BartTokenizer", "RobertaTokenizerFast", "LongformerTokenizerFast", "BartTokenizerFast", ]: sub_tokens = tokenizer.tokenize(token, add_prefix_space=True) else: sub_tokens = tokenizer.tokenize(token) for sub_token in sub_tokens: tok_to_orig_index.append(i) all_doc_tokens.append(sub_token) if is_training and not example.is_impossible: tok_start_position = orig_to_tok_index[example.start_position] if example.end_position < len(example.doc_tokens) - 1: tok_end_position = orig_to_tok_index[example.end_position + 1] - 1 else: tok_end_position = len(all_doc_tokens) - 1 (tok_start_position, tok_end_position) = _improve_answer_span( all_doc_tokens, tok_start_position, tok_end_position, tokenizer, example.answer_text ) spans = [] truncated_query = tokenizer.encode( example.question_text, add_special_tokens=False, truncation=True, max_length=max_query_length ) # Tokenizers who insert 2 SEP tokens in-between & need to have special handling # in the way they compute mask of added tokens. tokenizer_type = type(tokenizer).__name__.replace("Tokenizer", "").lower() sequence_added_tokens = ( tokenizer.model_max_length - tokenizer.max_len_single_sentence + 1 if tokenizer_type in MULTI_SEP_TOKENS_TOKENIZERS_SET else tokenizer.model_max_length - tokenizer.max_len_single_sentence ) sequence_pair_added_tokens = tokenizer.model_max_length - tokenizer.max_len_sentences_pair span_doc_tokens = all_doc_tokens while len(spans) * doc_stride < len(all_doc_tokens): # Define the side we want to truncate / pad and the text/pair sorting if tokenizer.padding_side == "right": texts = truncated_query pairs = span_doc_tokens truncation = TruncationStrategy.ONLY_SECOND.value else: texts = span_doc_tokens pairs = truncated_query truncation = TruncationStrategy.ONLY_FIRST.value encoded_dict = tokenizer.encode_plus( # TODO(thom) update this logic texts, pairs, truncation=truncation, padding=padding_strategy, max_length=max_seq_length, return_overflowing_tokens=True, stride=max_seq_length - doc_stride - len(truncated_query) - sequence_pair_added_tokens, return_token_type_ids=True, ) paragraph_len = min( len(all_doc_tokens) - len(spans) * doc_stride, max_seq_length - len(truncated_query) - sequence_pair_added_tokens, ) if tokenizer.pad_token_id in encoded_dict["input_ids"]: if tokenizer.padding_side == "right": non_padded_ids = encoded_dict["input_ids"][: encoded_dict["input_ids"].index(tokenizer.pad_token_id)] else: last_padding_id_position = ( len(encoded_dict["input_ids"]) - 1 - encoded_dict["input_ids"][::-1].index(tokenizer.pad_token_id) ) non_padded_ids = encoded_dict["input_ids"][last_padding_id_position + 1 :] else: non_padded_ids = encoded_dict["input_ids"] tokens = tokenizer.convert_ids_to_tokens(non_padded_ids) token_to_orig_map = {} for i in range(paragraph_len): index = len(truncated_query) + sequence_added_tokens + i if tokenizer.padding_side == "right" else i token_to_orig_map[index] = tok_to_orig_index[len(spans) * doc_stride + i] encoded_dict["paragraph_len"] = paragraph_len encoded_dict["tokens"] = tokens encoded_dict["token_to_orig_map"] = token_to_orig_map encoded_dict["truncated_query_with_special_tokens_length"] = len(truncated_query) + sequence_added_tokens encoded_dict["token_is_max_context"] = {} encoded_dict["start"] = len(spans) * doc_stride encoded_dict["length"] = paragraph_len spans.append(encoded_dict) if "overflowing_tokens" not in encoded_dict or ( "overflowing_tokens" in encoded_dict and len(encoded_dict["overflowing_tokens"]) == 0 ): break span_doc_tokens = encoded_dict["overflowing_tokens"] for doc_span_index in range(len(spans)): for j in range(spans[doc_span_index]["paragraph_len"]): is_max_context = _new_check_is_max_context(spans, doc_span_index, doc_span_index * doc_stride + j) index = ( j if tokenizer.padding_side == "left" else spans[doc_span_index]["truncated_query_with_special_tokens_length"] + j ) spans[doc_span_index]["token_is_max_context"][index] = is_max_context for span in spans: # Identify the position of the CLS token cls_index = span["input_ids"].index(tokenizer.cls_token_id) # p_mask: mask with 1 for token than cannot be in the answer (0 for token which can be in an answer) # Original TF implementation also keep the classification token (set to 0) p_mask = np.ones_like(span["token_type_ids"]) if tokenizer.padding_side == "right": p_mask[len(truncated_query) + sequence_added_tokens :] = 0 else: p_mask[-len(span["tokens"]) : -(len(truncated_query) + sequence_added_tokens)] = 0 pad_token_indices = np.where(span["input_ids"] == tokenizer.pad_token_id) special_token_indices = np.asarray( tokenizer.get_special_tokens_mask(span["input_ids"], already_has_special_tokens=True) ).nonzero() p_mask[pad_token_indices] = 1 p_mask[special_token_indices] = 1 # Set the cls index to 0: the CLS index can be used for impossible answers p_mask[cls_index] = 0 span_is_impossible = example.is_impossible start_position = 0 end_position = 0 if is_training and not span_is_impossible: # For training, if our document chunk does not contain an annotation # we throw it out, since there is nothing to predict. doc_start = span["start"] doc_end = span["start"] + span["length"] - 1 out_of_span = False if not (tok_start_position >= doc_start and tok_end_position <= doc_end): out_of_span = True if out_of_span: start_position = cls_index end_position = cls_index span_is_impossible = True else: if tokenizer.padding_side == "left": doc_offset = 0 else: doc_offset = len(truncated_query) + sequence_added_tokens start_position = tok_start_position - doc_start + doc_offset end_position = tok_end_position - doc_start + doc_offset features.append( SquadFeatures( span["input_ids"], span["attention_mask"], span["token_type_ids"], cls_index, p_mask.tolist(), example_index=0, # Can not set unique_id and example_index here. They will be set after multiple processing. unique_id=0, paragraph_len=span["paragraph_len"], token_is_max_context=span["token_is_max_context"], tokens=span["tokens"], token_to_orig_map=span["token_to_orig_map"], start_position=start_position, end_position=end_position, is_impossible=span_is_impossible, qas_id=example.qas_id, ) ) return features def squad_convert_example_to_features_init(tokenizer_for_convert: PreTrainedTokenizerBase): global tokenizer tokenizer = tokenizer_for_convert def squad_convert_examples_to_features( examples, tokenizer, max_seq_length, doc_stride, max_query_length, is_training, padding_strategy="max_length", return_dataset=False, threads=1, tqdm_enabled=True, ): """ Converts a list of examples into a list of features that can be directly given as input to a model. It is model-dependant and takes advantage of many of the tokenizer's features to create the model's inputs. Args: examples: list of [`~data.processors.squad.SquadExample`] tokenizer: an instance of a child of [`PreTrainedTokenizer`] max_seq_length: The maximum sequence length of the inputs. doc_stride: The stride used when the context is too large and is split across several features. max_query_length: The maximum length of the query. is_training: whether to create features for model evaluation or model training. padding_strategy: Default to "max_length". Which padding strategy to use return_dataset: Default False. Either 'pt' or 'tf'. if 'pt': returns a torch.data.TensorDataset, if 'tf': returns a tf.data.Dataset threads: multiple processing threads. Returns: list of [`~data.processors.squad.SquadFeatures`] Example: ```python processor = SquadV2Processor() examples = processor.get_dev_examples(data_dir) features = squad_convert_examples_to_features( examples=examples, tokenizer=tokenizer, max_seq_length=args.max_seq_length, doc_stride=args.doc_stride, max_query_length=args.max_query_length, is_training=not evaluate, ) ```""" # Defining helper methods features = [] threads = min(threads, cpu_count()) with Pool(threads, initializer=squad_convert_example_to_features_init, initargs=(tokenizer,)) as p: annotate_ = partial( squad_convert_example_to_features, max_seq_length=max_seq_length, doc_stride=doc_stride, max_query_length=max_query_length, padding_strategy=padding_strategy, is_training=is_training, ) features = list( tqdm( p.imap(annotate_, examples, chunksize=32), total=len(examples), desc="convert squad examples to features", disable=not tqdm_enabled, ) ) new_features = [] unique_id = 1000000000 example_index = 0 for example_features in tqdm( features, total=len(features), desc="add example index and unique id", disable=not tqdm_enabled ): if not example_features: continue for example_feature in example_features: example_feature.example_index = example_index example_feature.unique_id = unique_id new_features.append(example_feature) unique_id += 1 example_index += 1 features = new_features del new_features if return_dataset == "pt": if not is_torch_available(): raise RuntimeError("PyTorch must be installed to return a PyTorch dataset.") # Convert to Tensors and build dataset all_input_ids = torch.tensor([f.input_ids for f in features], dtype=torch.long) all_attention_masks = torch.tensor([f.attention_mask for f in features], dtype=torch.long) all_token_type_ids = torch.tensor([f.token_type_ids for f in features], dtype=torch.long) all_cls_index = torch.tensor([f.cls_index for f in features], dtype=torch.long) all_p_mask = torch.tensor([f.p_mask for f in features], dtype=torch.float) all_is_impossible = torch.tensor([f.is_impossible for f in features], dtype=torch.float) if not is_training: all_feature_index = torch.arange(all_input_ids.size(0), dtype=torch.long) dataset = TensorDataset( all_input_ids, all_attention_masks, all_token_type_ids, all_feature_index, all_cls_index, all_p_mask ) else: all_start_positions = torch.tensor([f.start_position for f in features], dtype=torch.long) all_end_positions = torch.tensor([f.end_position for f in features], dtype=torch.long) dataset = TensorDataset( all_input_ids, all_attention_masks, all_token_type_ids, all_start_positions, all_end_positions, all_cls_index, all_p_mask, all_is_impossible, ) return features, dataset elif return_dataset == "tf": if not is_tf_available(): raise RuntimeError("TensorFlow must be installed to return a TensorFlow dataset.") def gen(): for i, ex in enumerate(features): if ex.token_type_ids is None: yield ( { "input_ids": ex.input_ids, "attention_mask": ex.attention_mask, "feature_index": i, "qas_id": ex.qas_id, }, { "start_positions": ex.start_position, "end_positions": ex.end_position, "cls_index": ex.cls_index, "p_mask": ex.p_mask, "is_impossible": ex.is_impossible, }, ) else: yield ( { "input_ids": ex.input_ids, "attention_mask": ex.attention_mask, "token_type_ids": ex.token_type_ids, "feature_index": i, "qas_id": ex.qas_id, }, { "start_positions": ex.start_position, "end_positions": ex.end_position, "cls_index": ex.cls_index, "p_mask": ex.p_mask, "is_impossible": ex.is_impossible, }, ) # Why have we split the batch into a tuple? PyTorch just has a list of tensors. if "token_type_ids" in tokenizer.model_input_names: train_types = ( { "input_ids": tf.int32, "attention_mask": tf.int32, "token_type_ids": tf.int32, "feature_index": tf.int64, "qas_id": tf.string, }, { "start_positions": tf.int64, "end_positions": tf.int64, "cls_index": tf.int64, "p_mask": tf.int32, "is_impossible": tf.int32, }, ) train_shapes = ( { "input_ids": tf.TensorShape([None]), "attention_mask": tf.TensorShape([None]), "token_type_ids": tf.TensorShape([None]), "feature_index": tf.TensorShape([]), "qas_id": tf.TensorShape([]), }, { "start_positions": tf.TensorShape([]), "end_positions": tf.TensorShape([]), "cls_index": tf.TensorShape([]), "p_mask": tf.TensorShape([None]), "is_impossible": tf.TensorShape([]), }, ) else: train_types = ( {"input_ids": tf.int32, "attention_mask": tf.int32, "feature_index": tf.int64, "qas_id": tf.string}, { "start_positions": tf.int64, "end_positions": tf.int64, "cls_index": tf.int64, "p_mask": tf.int32, "is_impossible": tf.int32, }, ) train_shapes = ( { "input_ids": tf.TensorShape([None]), "attention_mask": tf.TensorShape([None]), "feature_index": tf.TensorShape([]), "qas_id": tf.TensorShape([]), }, { "start_positions": tf.TensorShape([]), "end_positions": tf.TensorShape([]), "cls_index": tf.TensorShape([]), "p_mask": tf.TensorShape([None]), "is_impossible": tf.TensorShape([]), }, ) return tf.data.Dataset.from_generator(gen, train_types, train_shapes) else: return features class SquadProcessor(DataProcessor): """ Processor for the SQuAD data set. overridden by SquadV1Processor and SquadV2Processor, used by the version 1.1 and version 2.0 of SQuAD, respectively. """ train_file = None dev_file = None def _get_example_from_tensor_dict(self, tensor_dict, evaluate=False): if not evaluate: answer = tensor_dict["answers"]["text"][0].numpy().decode("utf-8") answer_start = tensor_dict["answers"]["answer_start"][0].numpy() answers = [] else: answers = [ {"answer_start": start.numpy(), "text": text.numpy().decode("utf-8")} for start, text in zip(tensor_dict["answers"]["answer_start"], tensor_dict["answers"]["text"]) ] answer = None answer_start = None return SquadExample( qas_id=tensor_dict["id"].numpy().decode("utf-8"), question_text=tensor_dict["question"].numpy().decode("utf-8"), context_text=tensor_dict["context"].numpy().decode("utf-8"), answer_text=answer, start_position_character=answer_start, title=tensor_dict["title"].numpy().decode("utf-8"), answers=answers, ) def get_examples_from_dataset(self, dataset, evaluate=False): """ Creates a list of [`~data.processors.squad.SquadExample`] using a TFDS dataset. Args: dataset: The tfds dataset loaded from *tensorflow_datasets.load("squad")* evaluate: Boolean specifying if in evaluation mode or in training mode Returns: List of SquadExample Examples: ```python >>> import tensorflow_datasets as tfds >>> dataset = tfds.load("squad") >>> training_examples = get_examples_from_dataset(dataset, evaluate=False) >>> evaluation_examples = get_examples_from_dataset(dataset, evaluate=True) ```""" if evaluate: dataset = dataset["validation"] else: dataset = dataset["train"] examples = [] for tensor_dict in tqdm(dataset): examples.append(self._get_example_from_tensor_dict(tensor_dict, evaluate=evaluate)) return examples def get_train_examples(self, data_dir, filename=None): """ Returns the training examples from the data directory. Args: data_dir: Directory containing the data files used for training and evaluating. filename: None by default, specify this if the training file has a different name than the original one which is `train-v1.1.json` and `train-v2.0.json` for squad versions 1.1 and 2.0 respectively. """ if data_dir is None: data_dir = "" if self.train_file is None: raise ValueError("SquadProcessor should be instantiated via SquadV1Processor or SquadV2Processor") with open( os.path.join(data_dir, self.train_file if filename is None else filename), "r", encoding="utf-8" ) as reader: input_data = json.load(reader)["data"] return self._create_examples(input_data, "train") def get_dev_examples(self, data_dir, filename=None): """ Returns the evaluation example from the data directory. Args: data_dir: Directory containing the data files used for training and evaluating. filename: None by default, specify this if the evaluation file has a different name than the original one which is `dev-v1.1.json` and `dev-v2.0.json` for squad versions 1.1 and 2.0 respectively. """ if data_dir is None: data_dir = "" if self.dev_file is None: raise ValueError("SquadProcessor should be instantiated via SquadV1Processor or SquadV2Processor") with open( os.path.join(data_dir, self.dev_file if filename is None else filename), "r", encoding="utf-8" ) as reader: input_data = json.load(reader)["data"] return self._create_examples(input_data, "dev") def _create_examples(self, input_data, set_type): is_training = set_type == "train" examples = [] for entry in tqdm(input_data): title = entry["title"] for paragraph in entry["paragraphs"]: context_text = paragraph["context"] for qa in paragraph["qas"]: qas_id = qa["id"] question_text = qa["question"] start_position_character = None answer_text = None answers = [] is_impossible = qa.get("is_impossible", False) if not is_impossible: if is_training: answer = qa["answers"][0] answer_text = answer["text"] start_position_character = answer["answer_start"] else: answers = qa["answers"] example = SquadExample( qas_id=qas_id, question_text=question_text, context_text=context_text, answer_text=answer_text, start_position_character=start_position_character, title=title, is_impossible=is_impossible, answers=answers, ) examples.append(example) return examples class SquadV1Processor(SquadProcessor): train_file = "train-v1.1.json" dev_file = "dev-v1.1.json" class SquadV2Processor(SquadProcessor): train_file = "train-v2.0.json" dev_file = "dev-v2.0.json" class SquadExample: """ A single training/test example for the Squad dataset, as loaded from disk. Args: qas_id: The example's unique identifier question_text: The question string context_text: The context string answer_text: The answer string start_position_character: The character position of the start of the answer title: The title of the example answers: None by default, this is used during evaluation. Holds answers as well as their start positions. is_impossible: False by default, set to True if the example has no possible answer. """ def __init__( self, qas_id, question_text, context_text, answer_text, start_position_character, title, answers=[], is_impossible=False, ): self.qas_id = qas_id self.question_text = question_text self.context_text = context_text self.answer_text = answer_text self.title = title self.is_impossible = is_impossible self.answers = answers self.start_position, self.end_position = 0, 0 doc_tokens = [] char_to_word_offset = [] prev_is_whitespace = True # Split on whitespace so that different tokens may be attributed to their original position. for c in self.context_text: if _is_whitespace(c): prev_is_whitespace = True else: if prev_is_whitespace: doc_tokens.append(c) else: doc_tokens[-1] += c prev_is_whitespace = False char_to_word_offset.append(len(doc_tokens) - 1) self.doc_tokens = doc_tokens self.char_to_word_offset = char_to_word_offset # Start and end positions only has a value during evaluation. if start_position_character is not None and not is_impossible: self.start_position = char_to_word_offset[start_position_character] self.end_position = char_to_word_offset[ min(start_position_character + len(answer_text) - 1, len(char_to_word_offset) - 1) ] class SquadFeatures: """ Single squad example features to be fed to a model. Those features are model-specific and can be crafted from [`~data.processors.squad.SquadExample`] using the :method:*~transformers.data.processors.squad.squad_convert_examples_to_features* method. Args: input_ids: Indices of input sequence tokens in the vocabulary. attention_mask: Mask to avoid performing attention on padding token indices. token_type_ids: Segment token indices to indicate first and second portions of the inputs. cls_index: the index of the CLS token. p_mask: Mask identifying tokens that can be answers vs. tokens that cannot. Mask with 1 for tokens than cannot be in the answer and 0 for token that can be in an answer example_index: the index of the example unique_id: The unique Feature identifier paragraph_len: The length of the context token_is_max_context: List of booleans identifying which tokens have their maximum context in this feature object. If a token does not have their maximum context in this feature object, it means that another feature object has more information related to that token and should be prioritized over this feature for that token. tokens: list of tokens corresponding to the input ids token_to_orig_map: mapping between the tokens and the original text, needed in order to identify the answer. start_position: start of the answer token index end_position: end of the answer token index encoding: optionally store the BatchEncoding with the fast-tokenizer alignment methods. """ def __init__( self, input_ids, attention_mask, token_type_ids, cls_index, p_mask, example_index, unique_id, paragraph_len, token_is_max_context, tokens, token_to_orig_map, start_position, end_position, is_impossible, qas_id: str = None, encoding: BatchEncoding = None, ): self.input_ids = input_ids self.attention_mask = attention_mask self.token_type_ids = token_type_ids self.cls_index = cls_index self.p_mask = p_mask self.example_index = example_index self.unique_id = unique_id self.paragraph_len = paragraph_len self.token_is_max_context = token_is_max_context self.tokens = tokens self.token_to_orig_map = token_to_orig_map self.start_position = start_position self.end_position = end_position self.is_impossible = is_impossible self.qas_id = qas_id self.encoding = encoding class SquadResult: """ Constructs a SquadResult which can be used to evaluate a model's output on the SQuAD dataset. Args: unique_id: The unique identifier corresponding to that example. start_logits: The logits corresponding to the start of the answer end_logits: The logits corresponding to the end of the answer """ def __init__(self, unique_id, start_logits, end_logits, start_top_index=None, end_top_index=None, cls_logits=None): self.start_logits = start_logits self.end_logits = end_logits self.unique_id = unique_id if start_top_index: self.start_top_index = start_top_index self.end_top_index = end_top_index self.cls_logits = cls_logits