diff --git "a/FineTuneSAM_SEG_ECHO.ipynb" "b/FineTuneSAM_SEG_ECHO.ipynb"
--- "a/FineTuneSAM_SEG_ECHO.ipynb"
+++ "b/FineTuneSAM_SEG_ECHO.ipynb"
@@ -1,14 +1,9563 @@
{
"cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "colab_type": "text",
+ "id": "view-in-github"
+ },
+ "source": [
+ "
"
+ ]
+ },
{
"cell_type": "code",
- "execution_count": null,
+ "execution_count": 16,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Collecting environment information...\n",
+ "PyTorch version: 2.1.2+cu121\n",
+ "Is debug build: False\n",
+ "CUDA used to build PyTorch: 12.1\n",
+ "ROCM used to build PyTorch: N/A\n",
+ "\n",
+ "OS: Microsoft Windows 11 Home\n",
+ "GCC version: Could not collect\n",
+ "Clang version: Could not collect\n",
+ "CMake version: Could not collect\n",
+ "Libc version: N/A\n",
+ "\n",
+ "Python version: 3.9.18 (main, Sep 11 2023, 14:09:26) [MSC v.1916 64 bit (AMD64)] (64-bit runtime)\n",
+ "Python platform: Windows-10-10.0.22621-SP0\n",
+ "Is CUDA available: True\n",
+ "CUDA runtime version: 12.3.107\n",
+ "\n",
+ "CUDA_MODULE_LOADING set to: LAZY\n",
+ "GPU models and configuration: GPU 0: NVIDIA GeForce RTX 3080 Ti\n",
+ "Nvidia driver version: 551.23\n",
+ "cuDNN version: C:\\Program Files\\NVIDIA GPU Computing Toolkit\\CUDA\\v12.3\\bin\\cudnn_ops_train64_8.dll\n",
+ "HIP runtime version: N/A\n",
+ "MIOpen runtime version: N/A\n",
+ "Is XNNPACK available: True\n",
+ "\n",
+ "CPU:\n",
+ "Architecture=9\n",
+ "\n",
+ "\n",
+ "CurrentClockSpeed=3504\n",
+ "\n",
+ "\n",
+ "DeviceID=CPU0\n",
+ "\n",
+ "\n",
+ "Family=207\n",
+ "\n",
+ "\n",
+ "L2CacheSize=4096\n",
+ "\n",
+ "\n",
+ "L2CacheSpeed=\n",
+ "\n",
+ "\n",
+ "Manufacturer=GenuineIntel\n",
+ "\n",
+ "\n",
+ "MaxClockSpeed=3504\n",
+ "\n",
+ "\n",
+ "Name=11th Gen Intel(R) Core(TM) i9-11900KF @ 3.50GHz\n",
+ "\n",
+ "\n",
+ "ProcessorType=3\n",
+ "\n",
+ "\n",
+ "Revision=\n",
+ "\n",
+ "Versions of relevant libraries:\n",
+ "[pip3] numpy==1.26.3\n",
+ "[pip3] torch==2.1.2+cu121\n",
+ "[pip3] torchaudio==2.1.2\n",
+ "[pip3] torchvision==0.16.2\n",
+ "[conda] blas 1.0 mkl \n",
+ "[conda] cudatoolkit 11.3.1 h59b6b97_2 \n",
+ "[conda] mkl 2023.1.0 h6b88ed4_46358 \n",
+ "[conda] mkl-service 2.4.0 py39h2bbff1b_1 \n",
+ "[conda] mkl_fft 1.3.8 py39h2bbff1b_0 \n",
+ "[conda] mkl_random 1.2.4 py39h59b6b97_0 \n",
+ "[conda] numpy 1.26.3 py39h055cbcc_0 \n",
+ "[conda] numpy-base 1.26.3 py39h65a83cf_0 \n",
+ "[conda] pytorch-cuda 12.1 hde6ce7c_5 pytorch\n",
+ "[conda] pytorch-mutex 1.0 cpu pytorch\n",
+ "[conda] torch 2.1.2+cu121 pypi_0 pypi\n",
+ "[conda] torchaudio 2.1.2 py39_cpu pytorch\n",
+ "[conda] torchvision 0.16.2 py39_cpu pytorch\n"
+ ]
+ }
+ ],
+ "source": [
+ "!python -m torch.utils.collect_env"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 17,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import torch"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 18,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "a=torch.cuda.FloatTensor()"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 19,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# !pip uninstall torch"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 20,
+ "metadata": {
+ "colab": {
+ "base_uri": "https://localhost:8080/"
+ },
+ "id": "iobAOGDyff7W",
+ "outputId": "b256e5a4-a406-46f5-fd61-0b46f61afc2a"
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Requirement already satisfied: accelerate in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (0.27.2)\n",
+ "Requirement already satisfied: numpy>=1.17 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from accelerate) (1.26.3)\n",
+ "Requirement already satisfied: packaging>=20.0 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from accelerate) (23.1)\n",
+ "Requirement already satisfied: psutil in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from accelerate) (5.9.0)\n",
+ "Requirement already satisfied: pyyaml in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from accelerate) (6.0.1)\n",
+ "Requirement already satisfied: torch>=1.10.0 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from accelerate) (2.1.2+cu121)\n",
+ "Requirement already satisfied: huggingface-hub in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from accelerate) (0.20.2)\n",
+ "Requirement already satisfied: safetensors>=0.3.1 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from accelerate) (0.4.1)\n",
+ "Requirement already satisfied: filelock in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from torch>=1.10.0->accelerate) (3.13.1)\n",
+ "Requirement already satisfied: typing-extensions in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from torch>=1.10.0->accelerate) (4.9.0)\n",
+ "Requirement already satisfied: sympy in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from torch>=1.10.0->accelerate) (1.12)\n",
+ "Requirement already satisfied: networkx in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from torch>=1.10.0->accelerate) (3.1)\n",
+ "Requirement already satisfied: jinja2 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from torch>=1.10.0->accelerate) (3.1.2)\n",
+ "Requirement already satisfied: fsspec in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from torch>=1.10.0->accelerate) (2023.10.0)\n",
+ "Requirement already satisfied: requests in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from huggingface-hub->accelerate) (2.31.0)\n",
+ "Requirement already satisfied: tqdm>=4.42.1 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from huggingface-hub->accelerate) (4.66.1)\n",
+ "Requirement already satisfied: colorama in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from tqdm>=4.42.1->huggingface-hub->accelerate) (0.4.6)\n",
+ "Requirement already satisfied: MarkupSafe>=2.0 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from jinja2->torch>=1.10.0->accelerate) (2.1.3)\n",
+ "Requirement already satisfied: charset-normalizer<4,>=2 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from requests->huggingface-hub->accelerate) (2.0.4)\n",
+ "Requirement already satisfied: idna<4,>=2.5 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from requests->huggingface-hub->accelerate) (3.4)\n",
+ "Requirement already satisfied: urllib3<3,>=1.21.1 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from requests->huggingface-hub->accelerate) (2.1.0)\n",
+ "Requirement already satisfied: certifi>=2017.4.17 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from requests->huggingface-hub->accelerate) (2023.11.17)\n",
+ "Requirement already satisfied: mpmath>=0.19 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from sympy->torch>=1.10.0->accelerate) (1.3.0)\n",
+ "Requirement already satisfied: transformers in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (4.37.2)\n",
+ "Requirement already satisfied: filelock in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (3.13.1)\n",
+ "Requirement already satisfied: huggingface-hub<1.0,>=0.19.3 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (0.20.2)\n",
+ "Requirement already satisfied: numpy>=1.17 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (1.26.3)\n",
+ "Requirement already satisfied: packaging>=20.0 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (23.1)\n",
+ "Requirement already satisfied: pyyaml>=5.1 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (6.0.1)\n",
+ "Requirement already satisfied: regex!=2019.12.17 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (2023.12.25)\n",
+ "Requirement already satisfied: requests in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (2.31.0)\n",
+ "Requirement already satisfied: tokenizers<0.19,>=0.14 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (0.15.0)\n",
+ "Requirement already satisfied: safetensors>=0.4.1 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (0.4.1)\n",
+ "Requirement already satisfied: tqdm>=4.27 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from transformers) (4.66.1)\n",
+ "Requirement already satisfied: fsspec>=2023.5.0 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from huggingface-hub<1.0,>=0.19.3->transformers) (2023.10.0)\n",
+ "Requirement already satisfied: typing-extensions>=3.7.4.3 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from huggingface-hub<1.0,>=0.19.3->transformers) (4.9.0)\n",
+ "Requirement already satisfied: colorama in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from tqdm>=4.27->transformers) (0.4.6)\n",
+ "Requirement already satisfied: charset-normalizer<4,>=2 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from requests->transformers) (2.0.4)\n",
+ "Requirement already satisfied: idna<4,>=2.5 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from requests->transformers) (3.4)\n",
+ "Requirement already satisfied: urllib3<3,>=1.21.1 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from requests->transformers) (2.1.0)\n",
+ "Requirement already satisfied: certifi>=2017.4.17 in c:\\users\\rogbeast\\anaconda3\\envs\\hugging_face\\lib\\site-packages (from requests->transformers) (2023.11.17)\n"
+ ]
+ }
+ ],
+ "source": [
+ "!pip install -q transformers datasets segments-ai evaluate\n",
+ "!pip install -U accelerate\n",
+ "!pip install -U transformers"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 21,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# !pip3 install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cu121"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 22,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "True\n"
+ ]
+ }
+ ],
+ "source": [
+ "print(torch.backends.cudnn.enabled)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 23,
"metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "True\n"
+ ]
+ }
+ ],
+ "source": [
+ "print(torch.cuda.is_available())"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 24,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Available CUDA Devices:\n",
+ "Device 0: NVIDIA GeForce RTX 3080 Ti\n",
+ "CUDA_VISIBLE_DEVICES: Not set (All GPUs are visible)\n"
+ ]
+ }
+ ],
+ "source": [
+ "import torch\n",
+ "\n",
+ "# List all available GPUs\n",
+ "if torch.cuda.is_available():\n",
+ " print(\"Available CUDA Devices:\")\n",
+ " for i in range(torch.cuda.device_count()):\n",
+ " print(f\"Device {i}: {torch.cuda.get_device_name(i)}\")\n",
+ "else:\n",
+ " print(\"No CUDA devices are available\")\n",
+ "\n",
+ "# Check CUDA_VISIBLE_DEVICES environment variable\n",
+ "import os\n",
+ "cuda_visible_devices = os.getenv('CUDA_VISIBLE_DEVICES')\n",
+ "print(\"CUDA_VISIBLE_DEVICES:\", cuda_visible_devices if cuda_visible_devices is not None else \"Not set (All GPUs are visible)\")\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 25,
+ "metadata": {
+ "colab": {
+ "base_uri": "https://localhost:8080/",
+ "height": 145,
+ "referenced_widgets": [
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