pyyaml==6.0 scipy==1.7.3 networkx==2.6.3 biopython==1.79 rdkit-pypi==2022.03.5 e3nn==0.5.0 spyrmsd==0.5.2 pandas==1.3.5 biopandas==0.4.1 torch==2.1.0+cu118 torch_geometric -f https://download.pytorch.org/whl/torch/ -f https://data.pyg.org/whl/torch-2.1.0+cu118.html