import spaces import gradio as gr from gradio_molecule3d import Molecule3D from gradio_cofoldinginput import CofoldingInput import os import urllib.request CCD_URL = "https://huggingface.co/boltz-community/boltz-1/resolve/main/ccd.pkl" MODEL_URL = "https://huggingface.co/boltz-community/boltz-1/resolve/main/boltz1.ckpt" cache = "/home/user/.boltz" os.makedirs(cache) ccd = f"{cache}/ccd.pkl" if not os.path.exists(ccd): print( f"Downloading the CCD dictionary to {ccd}. You may " ) urllib.request.urlretrieve(CCD_URL, str(ccd)) # Download model model =f"{cache}/boltz1.ckpt" if not os.path.exists(model): print( f"Downloading the model weights to {model}" ) urllib.request.urlretrieve(MODEL_URL, str(model)) @spaces.GPU(duration=120) def predict(jobname, inputs, recycling_steps, sampling_steps, diffusion_samples): os.system("boltz predict ligand.fasta --output_format pdb") return "boltz_results_ligand/predictions/ligand/ligand_model_0.pdb" with gr.Blocks() as blocks: gr.Markdown("# Boltz-1") with gr.Tab("Main"): jobname = gr.Textbox(label="Jobname") inp = CofoldingInput(label="Input") out = Molecule3D(label="Output") with gr.Tab("Settings"): recycling_steps =gr.Slider(value=3, minimum=0, label="Recycling steps") sampling_steps = gr.Slider(value=200, minimum=0, label="Sampling steps") diffusion_samples = gr.Slider(value=1, label="Diffusion samples") btn = gr.Button("predict") btn.click(fn=predict, inputs=[jobname,inp, recycling_steps, sampling_steps, diffusion_samples], outputs=[out], api_name="predict") blocks.launch(ssr_mode=False)