import sys import os import zipfile import re import pandas as pd import gradio as gr import gzip import pickle import numpy as np from bertopic import BERTopic from datetime import datetime today = datetime.now().strftime("%d%m%Y") today_rev = datetime.now().strftime("%Y%m%d") # Log terminal output: https://github.com/gradio-app/gradio/issues/2362 class Logger: def __init__(self, filename): self.terminal = sys.stdout self.log = open(filename, "w") def write(self, message): self.terminal.write(message) self.log.write(message) def flush(self): self.terminal.flush() self.log.flush() def isatty(self): return False #sys.stdout = Logger("output.log") # def read_logs(): # sys.stdout.flush() # with open("output.log", "r") as f: # return f.read() def detect_file_type(filename): """Detect the file type based on its extension.""" if (filename.endswith('.csv')) | (filename.endswith('.csv.gz')) | (filename.endswith('.zip')): return 'csv' elif filename.endswith('.xlsx'): return 'xlsx' elif filename.endswith('.parquet'): return 'parquet' elif filename.endswith('.pkl.gz'): return 'pkl.gz' elif filename.endswith('.pkl'): return 'pkl' elif filename.endswith('.npz'): return 'npz' else: raise ValueError("Unsupported file type.") def read_file(filename): """Read the file based on its detected type.""" file_type = detect_file_type(filename) print("Loading in file") if file_type == 'csv': file = pd.read_csv(filename, low_memory=False)#.reset_index().drop(["index", "Unnamed: 0"], axis=1, errors="ignore") elif file_type == 'xlsx': file = pd.read_excel(filename)#.reset_index().drop(["index", "Unnamed: 0"], axis=1, errors="ignore") elif file_type == 'parquet': file = pd.read_parquet(filename)#.reset_index().drop(["index", "Unnamed: 0"], axis=1, errors="ignore") elif file_type == 'pkl.gz': with gzip.open(filename, 'rb') as file: file = pickle.load(file) #file = pd.read_pickle(filename) elif file_type == 'pkl': file = BERTopic.load(filename) elif file_type == 'npz': file = np.load(filename)['arr_0'] # If embedding files have 'super_compress' in the title, they have been multiplied by 100 before save if "compress" in filename: file /= 100 print("File load complete") return file def initial_file_load(in_file): ''' When file is loaded, update the column dropdown choices and write to relevant data states. ''' new_choices = [] concat_choices = [] custom_labels = pd.DataFrame() topic_model = None embeddings = np.array([]) file_list = [string.name for string in in_file] data_file_names = [string for string in file_list if "npz" not in string.lower() and "pkl" not in string.lower() and "topic_list.csv" not in string.lower()] if data_file_names: data_file_name = data_file_names[0] df = read_file(data_file_name) data_file_name_no_ext = get_file_path_end(data_file_name) new_choices = list(df.columns) concat_choices.extend(new_choices) output_text = "Data file loaded." else: error = "No data file provided." print(error) output_text = error model_file_names = [string for string in file_list if "pkl" in string.lower()] if model_file_names: model_file_name = model_file_names[0] topic_model = read_file(model_file_name) output_text = "Bertopic model loaded." embedding_file_names = [string for string in file_list if "npz" in string.lower()] if embedding_file_names: embedding_file_name = embedding_file_names[0] embeddings = read_file(embedding_file_name) output_text = "Embeddings loaded." label_file_names = [string for string in file_list if "topic_list" in string.lower()] if label_file_names: label_file_name = label_file_names[0] custom_labels = read_file(label_file_name) output_text = "Labels loaded." #The np.array([]) at the end is for clearing the embedding state when a new file is loaded return gr.Dropdown(choices=concat_choices), gr.Dropdown(choices=concat_choices), df, output_text, topic_model, embeddings, data_file_name_no_ext, custom_labels def custom_regex_load(in_file): ''' When file is loaded, update the column dropdown choices and write to relevant data states. ''' custom_regex = pd.DataFrame() file_list = [string.name for string in in_file] regex_file_names = [string for string in file_list if "csv" in string.lower()] if regex_file_names: regex_file_name = regex_file_names[0] custom_regex = read_file(regex_file_name) #regex_file_name_no_ext = get_file_path_end(regex_file_name) output_text = "Data file loaded." print(output_text) else: error = "No regex file provided." print(error) output_text = error return error, custom_regex return output_text, custom_regex def get_file_path_end(file_path): # First, get the basename of the file (e.g., "example.txt" from "/path/to/example.txt") basename = os.path.basename(file_path) # Then, split the basename and its extension and return only the basename without the extension filename_without_extension, _ = os.path.splitext(basename) #print(filename_without_extension) return filename_without_extension def get_file_path_end_with_ext(file_path): match = re.search(r'(.*[\/\\])?(.+)$', file_path) filename_end = match.group(2) if match else '' return filename_end def dummy_function(in_colnames): """ A dummy function that exists just so that dropdown updates work correctly. """ return None # Zip the above to export file def zip_folder(folder_path, output_zip_file): # Create a ZipFile object in write mode with zipfile.ZipFile(output_zip_file, 'w', zipfile.ZIP_DEFLATED) as zipf: # Walk through the directory for root, dirs, files in os.walk(folder_path): for file in files: # Create a complete file path file_path = os.path.join(root, file) # Add file to the zip file # The arcname argument sets the archive name, i.e., the name within the zip file zipf.write(file_path, arcname=os.path.relpath(file_path, folder_path)) def delete_files_in_folder(folder_path): # Check if the folder exists if not os.path.exists(folder_path): print(f"The folder {folder_path} does not exist.") return # Iterate over all files in the folder and remove each for filename in os.listdir(folder_path): file_path = os.path.join(folder_path, filename) try: if os.path.isfile(file_path) or os.path.islink(file_path): os.unlink(file_path) else: print(f"Skipping {file_path} as it is a directory") except Exception as e: print(f"Failed to delete {file_path}. Reason: {e}") def save_topic_outputs(topic_model, data_file_name_no_ext, output_list, docs, save_topic_model, progress=gr.Progress()): progress(0.7, desc= "Checking data") topic_dets = topic_model.get_topic_info() if topic_dets.shape[0] == 1: topic_det_output_name = "topic_details_" + data_file_name_no_ext + "_" + today_rev + ".csv" topic_dets.to_csv(topic_det_output_name) output_list.append(topic_det_output_name) return output_list, "No topics found, original file returned" progress(0.8, desc= "Saving output") topic_det_output_name = "topic_details_" + data_file_name_no_ext + "_" + today_rev + ".csv" topic_dets.to_csv(topic_det_output_name) output_list.append(topic_det_output_name) doc_det_output_name = "doc_details_" + data_file_name_no_ext + "_" + today_rev + ".csv" doc_dets = topic_model.get_document_info(docs)[["Document", "Topic", "Name", "Probability", "Representative_document"]] doc_dets.to_csv(doc_det_output_name) output_list.append(doc_det_output_name) if "CustomName" in topic_dets.columns: topics_text_out_str = str(topic_dets["CustomName"]) else: topics_text_out_str = str(topic_dets["Name"]) output_text = "Topics: " + topics_text_out_str # Save topic model to file if save_topic_model == "Yes": print("Saving BERTopic model in .pkl format.") folder_path = "output_model/" if not os.path.exists(folder_path): # Create the folder os.makedirs(folder_path) topic_model_save_name_pkl = folder_path + data_file_name_no_ext + "_topics_" + today_rev + ".pkl"# + ".safetensors" topic_model_save_name_zip = topic_model_save_name_pkl + ".zip" # Clear folder before replacing files #delete_files_in_folder(topic_model_save_name_pkl) topic_model.save(topic_model_save_name_pkl, serialization='pickle', save_embedding_model=False, save_ctfidf=False) # Zip file example #zip_folder(topic_model_save_name_pkl, topic_model_save_name_zip) output_list.append(topic_model_save_name_pkl) return output_list, output_text