# Weights & Biases USE_WANDB: True #@param {type:"boolean"} WANDB_API_KEY: 'REPLACE_ME' #@param {type:"string"} # Data DATASET_PATH: 'REPLACE_ME' #@param {type:"string"} MIN_VERTEBRAE_LEVEL: 8 #@param {type:"number"} INPUT_DIM: 3 #@param [2, 3] {allow-input: true} INPUT_SIZE: 64 #@param {type:"slider", min:32, max:112, step:4} OVERSAMPLING: True FOLD: 1 # Mask # one of 'none', 'channel' (mask is additional input channel), 'apply' (single vertebra mask is applied to input), # 'apply_all' (visible vertebra mask applied to input), 'crop' (mask is used to crop input) MASK: 'none' # Whether coordinates are provided in additional channels # See Liu, Rosanne, et al. "An intriguing failing of convolutional neural networks and the CoordConv solution" (https://arxiv.org/pdf/1807.03247.pdf) COORDINATES: False # Whether to save the best-performing model (wrt validation F1) SAVE_MODEL: False # Data Augmentation TRANSFORMS: ['modelsgenesis', 'intensity', 'spatial3d-simple'] # Task TASK: "detection" # "detection", "grading", "simple_grading" LOSS: 'binary_cross_entropy' # "ordinal_regression", "cross_entropy", "focal" # Model BATCH_SIZE: 16 #@param {type:"slider", min:32, max:512, step:32} LEARNING_RATE: 0.001 #@param {type:"number"} # AUTO_LR_FIND = True #@param {type: 'boolean'} DROPOUT: 0.3 #@param {type:"number"} WEIGHTED_LOSS: True #@param {type:"boolean"} EARLY_STOPPING_PATIENCE: 40 #@param {type:"number"} # Available backbones: # - DenseNet121 # - ModelsGenesis (3D) # - UNet3D MODEL_NAME: 'UNet3D' #@param ["DenseNet121"] {allow-input: true} # Identify all modules to freeze by name, e.g. ['down_tr64', 'down_tr128', 'down_tr256', 'down_tr512'] for Models Genesis/UNet3D FROZEN_LAYERS: []