# Based on: https://github.com/allenai/s2-folks/tree/main/examples/python # # from neuromllite.utils import load_simulation_json from neuromllite.utils import load_network_json from neuromllite.NetworkGenerator import generate_and_run MODELS = { "Muscle model": [ "models/Sim_IClamp_GenericMuscleCell.json", "models/IClamp_GenericMuscleCell.json", ], "Neuron model": [ "models/Sim_IClamp_GenericNeuronCell.json", "models/IClamp_GenericNeuronCell.json", ], } def run_model(text, model, verbose=False): info = """Running [%s] with parameter: [%s]... """ % ( model, text, ) print(info) sim_file = MODELS[model][0] net_file = MODELS[model][1] sim = load_simulation_json(sim_file) net = load_network_json(net_file) net.parameters["stim_amp"] = text.strip() if verbose: info += """```%s``` """ % sim.to_json() info += """```%s``` """ % net.to_json() traces, events = generate_and_run( sim, network=net, simulator="jNeuroML", base_dir="./models", target_dir="./models", return_results=True, ) # info+="""Results returned: %s"""%(list(traces.keys())) info += """Finished simulation!""" print(info) return info, traces, events