| import argparse | |
| from pygbif import occurrences as occ | |
| import json | |
| if __name__ == '__main__': | |
| parser = argparse.ArgumentParser() | |
| parser.add_argument("inputfile") | |
| parser.add_argument("--download_id", type=str) | |
| parser.add_argument("outputfile") | |
| args = parser.parse_args() | |
| datasette_metadata = None | |
| with open(args.inputfile, 'r') as f_in: | |
| datasette_metadata = json.load(f_in) | |
| gbif_metadata = occ.download_meta(key = args.download_id) | |
| datasette_metadata['licence'] = gbif_metadata['license'] | |
| datasette_metadata['source_url'] = 'https://doi.org{}'.format(gbif_metadata['doi']) | |
| datasette_metadata_json = json.dumps(datasette_metadata) | |
| with open(args.outputfile, 'w') as f_out: | |
| f_out.write(datasette_metadata_json) |