# Copyright (c) Microsoft Corporation. # Licensed under the MIT License. import os import sys import time import shutil import platform import numpy as np from datetime import datetime import torch import torchvision as tv import torch.backends.cudnn as cudnn # from torch.utils.tensorboard import SummaryWriter import yaml import matplotlib.pyplot as plt from easydict import EasyDict as edict import torchvision.utils as vutils ##### option parsing ###### def print_options(config_dict): print("------------ Options -------------") for k, v in sorted(config_dict.items()): print("%s: %s" % (str(k), str(v))) print("-------------- End ----------------") def save_options(config_dict): from time import gmtime, strftime file_dir = os.path.join(config_dict["checkpoint_dir"], config_dict["name"]) mkdir_if_not(file_dir) file_name = os.path.join(file_dir, "opt.txt") with open(file_name, "wt") as opt_file: opt_file.write(os.path.basename(sys.argv[0]) + " " + strftime("%Y-%m-%d %H:%M:%S", gmtime()) + "\n") opt_file.write("------------ Options -------------\n") for k, v in sorted(config_dict.items()): opt_file.write("%s: %s\n" % (str(k), str(v))) opt_file.write("-------------- End ----------------\n") def config_parse(config_file, options, save=True): with open(config_file, "r") as stream: config_dict = yaml.safe_load(stream) config = edict(config_dict) for option_key, option_value in vars(options).items(): config_dict[option_key] = option_value config[option_key] = option_value if config.debug_mode: config_dict["num_workers"] = 0 config.num_workers = 0 config.batch_size = 2 if isinstance(config.gpu_ids, str): config.gpu_ids = [int(x) for x in config.gpu_ids.split(",")][0] print_options(config_dict) if save: save_options(config_dict) return config ###### utility ###### def to_np(x): return x.cpu().numpy() def prepare_device(use_gpu, gpu_ids): if use_gpu: cudnn.benchmark = True os.environ["CUDA_DEVICE_ORDER"] = "PCI_BUS_ID" if isinstance(gpu_ids, str): gpu_ids = [int(x) for x in gpu_ids.split(",")] torch.cuda.set_device(gpu_ids[0]) device = torch.device("cuda:" + str(gpu_ids[0])) else: torch.cuda.set_device(gpu_ids) device = torch.device("cuda:" + str(gpu_ids)) print("running on GPU {}".format(gpu_ids)) else: device = torch.device("cpu") print("running on CPU") return device ###### file system ###### def get_dir_size(start_path="."): total_size = 0 for dirpath, dirnames, filenames in os.walk(start_path): for f in filenames: fp = os.path.join(dirpath, f) total_size += os.path.getsize(fp) return total_size def mkdir_if_not(dir_path): if not os.path.exists(dir_path): os.makedirs(dir_path) ##### System related ###### class Timer: def __init__(self, msg): self.msg = msg self.start_time = None def __enter__(self): self.start_time = time.time() def __exit__(self, exc_type, exc_value, exc_tb): elapse = time.time() - self.start_time print(self.msg % elapse) ###### interactive ###### def get_size(start_path="."): total_size = 0 for dirpath, dirnames, filenames in os.walk(start_path): for f in filenames: fp = os.path.join(dirpath, f) total_size += os.path.getsize(fp) return total_size def clean_tensorboard(directory): tensorboard_list = os.listdir(directory) SIZE_THRESH = 100000 for tensorboard in tensorboard_list: tensorboard = os.path.join(directory, tensorboard) if get_size(tensorboard) < SIZE_THRESH: print("deleting the empty tensorboard: ", tensorboard) # if os.path.isdir(tensorboard): shutil.rmtree(tensorboard) else: os.remove(tensorboard) def prepare_tensorboard(config, experiment_name=datetime.now().strftime("%Y-%m-%d %H-%M-%S")): tensorboard_directory = os.path.join(config.checkpoint_dir, config.name, "tensorboard_logs") mkdir_if_not(tensorboard_directory) clean_tensorboard(tensorboard_directory) tb_writer = SummaryWriter(os.path.join(tensorboard_directory, experiment_name), flush_secs=10) # try: # shutil.copy('outputs/opt.txt', tensorboard_directory) # except: # print('cannot find file opt.txt') return tb_writer def tb_loss_logger(tb_writer, iter_index, loss_logger): for tag, value in loss_logger.items(): tb_writer.add_scalar(tag, scalar_value=value.item(), global_step=iter_index) def tb_image_logger(tb_writer, iter_index, images_info, config): ### Save and write the output into the tensorboard tb_logger_path = os.path.join(config.output_dir, config.name, config.train_mode) mkdir_if_not(tb_logger_path) for tag, image in images_info.items(): if tag == "test_image_prediction" or tag == "image_prediction": continue image = tv.utils.make_grid(image.cpu()) image = torch.clamp(image, 0, 1) tb_writer.add_image(tag, img_tensor=image, global_step=iter_index) tv.transforms.functional.to_pil_image(image).save( os.path.join(tb_logger_path, "{:06d}_{}.jpg".format(iter_index, tag)) ) def tb_image_logger_test(epoch, iter, images_info, config): url = os.path.join(config.output_dir, config.name, config.train_mode, "val_" + str(epoch)) if not os.path.exists(url): os.makedirs(url) scratch_img = images_info["test_scratch_image"].data.cpu() if config.norm_input: scratch_img = (scratch_img + 1.0) / 2.0 scratch_img = torch.clamp(scratch_img, 0, 1) gt_mask = images_info["test_mask_image"].data.cpu() predict_mask = images_info["test_scratch_prediction"].data.cpu() predict_hard_mask = (predict_mask.data.cpu() >= 0.5).float() imgs = torch.cat((scratch_img, predict_hard_mask, gt_mask), 0) img_grid = vutils.save_image( imgs, os.path.join(url, str(iter) + ".jpg"), nrow=len(scratch_img), padding=0, normalize=True ) def imshow(input_image, title=None, to_numpy=False): inp = input_image if to_numpy or type(input_image) is torch.Tensor: inp = input_image.numpy() fig = plt.figure() if inp.ndim == 2: fig = plt.imshow(inp, cmap="gray", clim=[0, 255]) else: fig = plt.imshow(np.transpose(inp, [1, 2, 0]).astype(np.uint8)) plt.axis("off") fig.axes.get_xaxis().set_visible(False) fig.axes.get_yaxis().set_visible(False) plt.title(title) ###### vgg preprocessing ###### def vgg_preprocess(tensor): # input is RGB tensor which ranges in [0,1] # output is BGR tensor which ranges in [0,255] tensor_bgr = torch.cat((tensor[:, 2:3, :, :], tensor[:, 1:2, :, :], tensor[:, 0:1, :, :]), dim=1) # tensor_bgr = tensor[:, [2, 1, 0], ...] tensor_bgr_ml = tensor_bgr - torch.Tensor([0.40760392, 0.45795686, 0.48501961]).type_as(tensor_bgr).view( 1, 3, 1, 1 ) tensor_rst = tensor_bgr_ml * 255 return tensor_rst def torch_vgg_preprocess(tensor): # pytorch version normalization # note that both input and output are RGB tensors; # input and output ranges in [0,1] # normalize the tensor with mean and variance tensor_mc = tensor - torch.Tensor([0.485, 0.456, 0.406]).type_as(tensor).view(1, 3, 1, 1) tensor_mc_norm = tensor_mc / torch.Tensor([0.229, 0.224, 0.225]).type_as(tensor_mc).view(1, 3, 1, 1) return tensor_mc_norm def network_gradient(net, gradient_on=True): if gradient_on: for param in net.parameters(): param.requires_grad = True else: for param in net.parameters(): param.requires_grad = False return net