# ------------------------------------------------------------------------ # Modified from OFA (https://github.com/OFA-Sys/OFA) # Copyright 2022 The OFA-Sys Team. # All rights reserved. # This source code is licensed under the Apache 2.0 license # found in the LICENSE file in the root directory. # ------------------------------------------------------------------------ # Modifications Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved. # SPDX-License-Identifier: Apache-2.0 try: from collections.abc import Iterable except ImportError: from collections import Iterable import contextlib import itertools import logging import re import warnings from typing import Optional, Tuple import numpy as np import torch from fairseq.file_io import PathManager from fairseq import utils import os logger = logging.getLogger(__name__) def infer_language_pair(path): """Infer language pair from filename: .-.(...).idx""" src, dst = None, None for filename in PathManager.ls(path): parts = filename.split(".") if len(parts) >= 3 and len(parts[1].split("-")) == 2: return parts[1].split("-") return src, dst def collate_tokens( values, pad_idx, eos_idx=None, left_pad=False, move_eos_to_beginning=False, pad_to_length=None, pad_to_multiple=1, pad_to_bsz=None, ): """Convert a list of 1d tensors into a padded 2d tensor.""" size = max(v.size(0) for v in values) size = size if pad_to_length is None else max(size, pad_to_length) if pad_to_multiple != 1 and size % pad_to_multiple != 0: size = int(((size - 0.1) // pad_to_multiple + 1) * pad_to_multiple) def copy_tensor(src, dst): assert dst.numel() == src.numel() if move_eos_to_beginning: if eos_idx is None: # if no eos_idx is specified, then use the last token in src dst[0] = src[-1] else: dst[0] = eos_idx dst[1:] = src[:-1] else: dst.copy_(src) if values[0].dim() == 1: res = values[0].new(len(values), size).fill_(pad_idx) elif values[0].dim() == 2: assert move_eos_to_beginning is False res = values[0].new(len(values), size, values[0].size(1)).fill_(pad_idx) else: raise NotImplementedError for i, v in enumerate(values): copy_tensor(v, res[i][size - len(v) :] if left_pad else res[i][: len(v)]) return res def load_indexed_dataset( path, dictionary=None, dataset_impl=None, combine=False, default="cached" ): """A helper function for loading indexed datasets. Args: path (str): path to indexed dataset (e.g., 'data-bin/train') dictionary (~fairseq.data.Dictionary): data dictionary dataset_impl (str, optional): which dataset implementation to use. If not provided, it will be inferred automatically. For legacy indexed data we use the 'cached' implementation by default. combine (bool, optional): automatically load and combine multiple datasets. For example, if *path* is 'data-bin/train', then we will combine 'data-bin/train', 'data-bin/train1', ... and return a single ConcatDataset instance. """ import fairseq.data.indexed_dataset as indexed_dataset from fairseq.data.concat_dataset import ConcatDataset datasets = [] for k in itertools.count(): path_k = path + (str(k) if k > 0 else "") try: path_k = indexed_dataset.get_indexed_dataset_to_local(path_k) except Exception as e: if "StorageException: [404] Path not found" in str(e): logger.warning(f"path_k: {e} not found") else: raise e dataset_impl_k = dataset_impl if dataset_impl_k is None: dataset_impl_k = indexed_dataset.infer_dataset_impl(path_k) dataset = indexed_dataset.make_dataset( path_k, impl=dataset_impl_k or default, fix_lua_indexing=True, dictionary=dictionary, ) if dataset is None: break logger.info("loaded {:,} examples from: {}".format(len(dataset), path_k)) datasets.append(dataset) if not combine: break if len(datasets) == 0: return None elif len(datasets) == 1: return datasets[0] else: return ConcatDataset(datasets) @contextlib.contextmanager def numpy_seed(seed, *addl_seeds): """Context manager which seeds the NumPy PRNG with the specified seed and restores the state afterward""" if seed is None: yield return if len(addl_seeds) > 0: seed = int(hash((seed, *addl_seeds)) % 1e6) state = np.random.get_state() np.random.seed(seed) try: yield finally: np.random.set_state(state) def collect_filtered(function, iterable, filtered): """ Similar to :func:`filter` but collects filtered elements in ``filtered``. Args: function (callable): function that returns ``False`` for elements that should be filtered iterable (iterable): iterable to filter filtered (list): list to store filtered elements """ for el in iterable: if function(el): yield el else: filtered.append(el) def _filter_by_size_dynamic(indices, size_fn, max_positions, raise_exception=False): def compare_leq(a, b): return a <= b if not isinstance(a, tuple) else max(a) <= b def check_size(idx): if isinstance(max_positions, float) or isinstance(max_positions, int): return size_fn(idx) <= max_positions elif isinstance(max_positions, dict): idx_size = size_fn(idx) assert isinstance(idx_size, dict) intersect_keys = set(max_positions.keys()) & set(idx_size.keys()) return all( all( a is None or b is None or a <= b for a, b in zip(idx_size[key], max_positions[key]) ) for key in intersect_keys ) else: # For MultiCorpusSampledDataset, will generalize it later if not isinstance(size_fn(idx), Iterable): return all(size_fn(idx) <= b for b in max_positions) return all( a is None or b is None or a <= b for a, b in zip(size_fn(idx), max_positions) ) ignored = [] itr = collect_filtered(check_size, indices, ignored) indices = np.fromiter(itr, dtype=np.int64, count=-1) return indices, ignored def filter_by_size(indices, dataset, max_positions, raise_exception=False): """ [deprecated] Filter indices based on their size. Use `FairseqDataset::filter_indices_by_size` instead. Args: indices (List[int]): ordered list of dataset indices dataset (FairseqDataset): fairseq dataset instance max_positions (tuple): filter elements larger than this size. Comparisons are done component-wise. raise_exception (bool, optional): if ``True``, raise an exception if any elements are filtered (default: False). """ warnings.warn( "data_utils.filter_by_size is deprecated. " "Use `FairseqDataset::filter_indices_by_size` instead.", stacklevel=2, ) if isinstance(max_positions, float) or isinstance(max_positions, int): if hasattr(dataset, "sizes") and isinstance(dataset.sizes, np.ndarray): ignored = indices[dataset.sizes[indices] > max_positions].tolist() indices = indices[dataset.sizes[indices] <= max_positions] elif ( hasattr(dataset, "sizes") and isinstance(dataset.sizes, list) and len(dataset.sizes) == 1 ): ignored = indices[dataset.sizes[0][indices] > max_positions].tolist() indices = indices[dataset.sizes[0][indices] <= max_positions] else: indices, ignored = _filter_by_size_dynamic( indices, dataset.size, max_positions ) else: indices, ignored = _filter_by_size_dynamic(indices, dataset.size, max_positions) if len(ignored) > 0 and raise_exception: raise Exception( ( "Size of sample #{} is invalid (={}) since max_positions={}, " "skip this example with --skip-invalid-size-inputs-valid-test" ).format(ignored[0], dataset.size(ignored[0]), max_positions) ) if len(ignored) > 0: logger.warning( ( "{} samples have invalid sizes and will be skipped, " "max_positions={}, first few sample ids={}" ).format(len(ignored), max_positions, ignored[:10]) ) return indices def filter_paired_dataset_indices_by_size(src_sizes, tgt_sizes, indices, max_sizes): """Filter a list of sample indices. Remove those that are longer than specified in max_sizes. Args: indices (np.array): original array of sample indices max_sizes (int or list[int] or tuple[int]): max sample size, can be defined separately for src and tgt (then list or tuple) Returns: np.array: filtered sample array list: list of removed indices """ if max_sizes is None: return indices, [] if type(max_sizes) in (int, float): max_src_size, max_tgt_size = max_sizes, max_sizes else: max_src_size, max_tgt_size = max_sizes if tgt_sizes is None: ignored = indices[src_sizes[indices] > max_src_size] else: ignored = indices[ (src_sizes[indices] > max_src_size) | (tgt_sizes[indices] > max_tgt_size) ] if len(ignored) > 0: if tgt_sizes is None: indices = indices[src_sizes[indices] <= max_src_size] else: indices = indices[ (src_sizes[indices] <= max_src_size) & (tgt_sizes[indices] <= max_tgt_size) ] return indices, ignored.tolist() def batch_by_size( indices, num_tokens_fn, num_tokens_vec=None, max_tokens=None, max_sentences=None, required_batch_size_multiple=1, fixed_shapes=None, ): """ Yield mini-batches of indices bucketed by size. Batches may contain sequences of different lengths. Args: indices (List[int]): ordered list of dataset indices num_tokens_fn (callable): function that returns the number of tokens at a given index num_tokens_vec (List[int], optional): precomputed vector of the number of tokens for each index in indices (to enable faster batch generation) max_tokens (int, optional): max number of tokens in each batch (default: None). max_sentences (int, optional): max number of sentences in each batch (default: None). required_batch_size_multiple (int, optional): require batch size to be less than N or a multiple of N (default: 1). fixed_shapes (List[Tuple[int, int]], optional): if given, batches will only be created with the given shapes. *max_sentences* and *required_batch_size_multiple* will be ignored (default: None). """ try: from fairseq.data.data_utils_fast import ( batch_by_size_fn, batch_by_size_vec, batch_fixed_shapes_fast, ) except ImportError: raise ImportError( "Please build Cython components with: " "`python setup.py build_ext --inplace`" ) except ValueError: raise ValueError( "Please build (or rebuild) Cython components with `python setup.py build_ext --inplace`." ) # added int() to avoid TypeError: an integer is required max_tokens = ( int(max_tokens) if max_tokens is not None else -1 ) max_sentences = max_sentences if max_sentences is not None else -1 bsz_mult = required_batch_size_multiple if not isinstance(indices, np.ndarray): indices = np.fromiter(indices, dtype=np.int64, count=-1) if num_tokens_vec is not None and not isinstance(num_tokens_vec, np.ndarray): num_tokens_vec = np.fromiter(num_tokens_vec, dtype=np.int64, count=-1) if fixed_shapes is None: if num_tokens_vec is None: return batch_by_size_fn( indices, num_tokens_fn, max_tokens, max_sentences, bsz_mult, ) else: return batch_by_size_vec( indices, num_tokens_vec, max_tokens, max_sentences, bsz_mult, ) else: fixed_shapes = np.array(fixed_shapes, dtype=np.int64) sort_order = np.lexsort( [ fixed_shapes[:, 1].argsort(), # length fixed_shapes[:, 0].argsort(), # bsz ] ) fixed_shapes_sorted = fixed_shapes[sort_order] return batch_fixed_shapes_fast(indices, num_tokens_fn, fixed_shapes_sorted) def post_process(sentence: str, symbol: str): if symbol == "sentencepiece": sentence = sentence.replace(" ", "").replace("\u2581", " ").strip() elif symbol == "wordpiece": sentence = sentence.replace(" ", "").replace("_", " ").strip() elif symbol == "letter": sentence = sentence.replace(" ", "").replace("|", " ").strip() elif symbol == "silence": import re sentence = sentence.replace("", "") sentence = re.sub(' +', ' ', sentence).strip() elif symbol == "_EOW": sentence = sentence.replace(" ", "").replace("_EOW", " ").strip() elif symbol in {"subword_nmt", "@@ ", "@@"}: if symbol == "subword_nmt": symbol = "@@ " sentence = (sentence + " ").replace(symbol, "").rstrip() elif symbol == "none": pass elif symbol is not None: raise NotImplementedError(f"Unknown post_process option: {symbol}") return sentence def compute_mask_indices( shape: Tuple[int, int], padding_mask: Optional[torch.Tensor], mask_prob: float, mask_length: int, mask_type: str = "static", mask_other: float = 0.0, min_masks: int = 0, no_overlap: bool = False, min_space: int = 0, ) -> np.ndarray: """ Computes random mask spans for a given shape Args: shape: the the shape for which to compute masks. should be of size 2 where first element is batch size and 2nd is timesteps padding_mask: optional padding mask of the same size as shape, which will prevent masking padded elements mask_prob: probability for each token to be chosen as start of the span to be masked. this will be multiplied by number of timesteps divided by length of mask span to mask approximately this percentage of all elements. however due to overlaps, the actual number will be smaller (unless no_overlap is True) mask_type: how to compute mask lengths static = fixed size uniform = sample from uniform distribution [mask_other, mask_length*2] normal = sample from normal distribution with mean mask_length and stdev mask_other. mask is min 1 element poisson = sample from possion distribution with lambda = mask length min_masks: minimum number of masked spans no_overlap: if false, will switch to an alternative recursive algorithm that prevents spans from overlapping min_space: only used if no_overlap is True, this is how many elements to keep unmasked between spans """ bsz, all_sz = shape mask = np.full((bsz, all_sz), False) all_num_mask = int( # add a random number for probabilistic rounding mask_prob * all_sz / float(mask_length) + np.random.rand() ) all_num_mask = max(min_masks, all_num_mask) mask_idcs = [] for i in range(bsz): if padding_mask is not None: sz = all_sz - padding_mask[i].long().sum().item() num_mask = int( # add a random number for probabilistic rounding mask_prob * sz / float(mask_length) + np.random.rand() ) num_mask = max(min_masks, num_mask) else: sz = all_sz num_mask = all_num_mask if mask_type == "static": lengths = np.full(num_mask, mask_length) elif mask_type == "uniform": lengths = np.random.randint(mask_other, mask_length * 2 + 1, size=num_mask) elif mask_type == "normal": lengths = np.random.normal(mask_length, mask_other, size=num_mask) lengths = [max(1, int(round(x))) for x in lengths] elif mask_type == "poisson": lengths = np.random.poisson(mask_length, size=num_mask) lengths = [int(round(x)) for x in lengths] else: raise Exception("unknown mask selection " + mask_type) if sum(lengths) == 0: lengths[0] = min(mask_length, sz - 1) if no_overlap: mask_idc = [] def arrange(s, e, length, keep_length): span_start = np.random.randint(s, e - length) mask_idc.extend(span_start + i for i in range(length)) new_parts = [] if span_start - s - min_space >= keep_length: new_parts.append((s, span_start - min_space + 1)) if e - span_start - keep_length - min_space > keep_length: new_parts.append((span_start + length + min_space, e)) return new_parts parts = [(0, sz)] min_length = min(lengths) for length in sorted(lengths, reverse=True): lens = np.fromiter( (e - s if e - s >= length + min_space else 0 for s, e in parts), np.int, ) l_sum = np.sum(lens) if l_sum == 0: break probs = lens / np.sum(lens) c = np.random.choice(len(parts), p=probs) s, e = parts.pop(c) parts.extend(arrange(s, e, length, min_length)) mask_idc = np.asarray(mask_idc) else: min_len = min(lengths) if sz - min_len <= num_mask: min_len = sz - num_mask - 1 mask_idc = np.random.choice(sz - min_len, num_mask, replace=False) mask_idc = np.asarray( [ mask_idc[j] + offset for j in range(len(mask_idc)) for offset in range(lengths[j]) ] ) mask_idcs.append(np.unique(mask_idc[mask_idc < sz])) min_len = min([len(m) for m in mask_idcs]) for i, mask_idc in enumerate(mask_idcs): if len(mask_idc) > min_len: mask_idc = np.random.choice(mask_idc, min_len, replace=False) mask[i, mask_idc] = True return mask def get_mem_usage(): try: import psutil mb = 1024 * 1024 return f"used={psutil.virtual_memory().used / mb}Mb; avail={psutil.virtual_memory().available / mb}Mb" except ImportError: return "N/A" # lens: torch.LongTensor # returns: torch.BoolTensor def lengths_to_padding_mask(lens): bsz, max_lens = lens.size(0), torch.max(lens).item() mask = torch.arange(max_lens).to(lens.device).view(1, max_lens) mask = mask.expand(bsz, -1) >= lens.view(bsz, 1).expand(-1, max_lens) return mask # lens: torch.LongTensor # returns: torch.BoolTensor def lengths_to_mask(lens): return ~lengths_to_padding_mask(lens) def get_buckets(sizes, num_buckets): buckets = np.unique( np.percentile( sizes, np.linspace(0, 100, num_buckets + 1), interpolation='lower', )[1:] ) return buckets def get_bucketed_sizes(orig_sizes, buckets): sizes = np.copy(orig_sizes) assert np.min(sizes) >= 0 start_val = -1 for end_val in buckets: mask = (sizes > start_val) & (sizes <= end_val) sizes[mask] = end_val start_val = end_val return sizes def _find_extra_valid_paths(dataset_path: str) -> set: paths = utils.split_paths(dataset_path) all_valid_paths = set() for sub_dir in paths: contents = PathManager.ls(sub_dir) valid_paths = [c for c in contents if re.match("valid*[0-9].*", c) is not None] all_valid_paths |= {os.path.basename(p) for p in valid_paths} # Remove .bin, .idx etc roots = {os.path.splitext(p)[0] for p in all_valid_paths} return roots def raise_if_valid_subsets_unintentionally_ignored(train_cfg) -> None: """Raises if there are paths matching 'valid*[0-9].*' which are not combined or ignored.""" if ( train_cfg.dataset.ignore_unused_valid_subsets or train_cfg.dataset.combine_valid_subsets or train_cfg.dataset.disable_validation or not hasattr(train_cfg.task, "data") ): return other_paths = _find_extra_valid_paths(train_cfg.task.data) specified_subsets = train_cfg.dataset.valid_subset.split(",") ignored_paths = [p for p in other_paths if p not in specified_subsets] if ignored_paths: advice = "Set --combine-val to combine them or --ignore-unused-valid-subsets to ignore them." msg = f"Valid paths {ignored_paths} will be ignored. {advice}" raise ValueError(msg)