from skimage import io import numpy as np from batchgenerators.utilities.file_and_folder_operations import * import argparse def extract_boundaries(sample_path): zone_orig = io.imread(sample_path) zone_pad = np.pad(zone_orig, ((1,1),(1,1)), 'reflect') zone_b = np.pad(zone_orig, ((2,0),(1,1)), "reflect") zone_t = np.pad(zone_orig, ((0,2),(1,1)), "reflect") zone_r = np.pad(zone_orig, ((1,1),(0,2)), "reflect") zone_l = np.pad(zone_orig, ((1,1),(2,0)), "reflect") boundaries = np.zeros_like(zone_pad) isboundary = np.logical_or.reduce((zone_pad != zone_b, zone_pad != zone_t, zone_pad != zone_r, zone_pad != zone_l)) boundaries[np.logical_and(zone_pad == 127, isboundary)] = 255 return boundaries[1:-1, 1:-1] if __name__ == '__main__': parser = argparse.ArgumentParser() parser.add_argument("-data_path", help="percentage of the dataset used for training validation and test") args = parser.parse_args() data_path = args.data_path output_path = join(data_path, 'boundaries') train_data_path = join(data_path, 'zones', 'train') test_data_path = join(data_path,'zones', 'test') train_output_path = join(output_path, 'train') test_output_path = join(output_path, 'test') maybe_mkdir_p(output_path) maybe_mkdir_p(train_output_path) maybe_mkdir_p(test_output_path) # Train for train_file in os.listdir(train_data_path): print(train_file) # load image sample_path = join(train_data_path, train_file) boundary = extract_boundaries(sample_path) output_file = train_file[:-len('zones.png')] + 'boundary.png' output_path = join(train_output_path, output_file) io.imsave(output_path, boundary) # Test for test_file in os.listdir(test_data_path): print(test_file) # load image sample_path = join(test_data_path, test_file) boundary = extract_boundaries(sample_path) output_file = test_file[:-len('zones.png')]+ 'boundary.png' output_path = join(test_output_path, output_file) io.imsave(output_path, boundary)