# Copyright 2020 Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from batchgenerators.utilities.file_and_folder_operations import * def pretend_to_be_nnUNetTrainer(folder, checkpoints=("model_best.model.pkl", "model_final_checkpoint.model.pkl")): pretend_to_be_other_trainer(folder, "nnUNetTrainer", checkpoints) def pretend_to_be_other_trainer(folder, new_trainer_name, checkpoints=("model_best.model.pkl", "model_final_checkpoint.model.pkl")): folds = subdirs(folder, prefix="fold_", join=False) if isdir(join(folder, 'all')): folds.append('all') for c in checkpoints: for f in folds: checkpoint_file = join(folder, f, c) if isfile(checkpoint_file): a = load_pickle(checkpoint_file) a['name'] = new_trainer_name save_pickle(a, checkpoint_file) def main(): import argparse parser = argparse.ArgumentParser(description='Use this script to change the nnunet trainer class of a saved ' 'model. Useful for models that were trained with trainers that do ' 'not support inference (multi GPU trainers) or for trainer classes ' 'whose source code is not available. For this to work the network ' 'architecture must be identical between the original trainer ' 'class and the trainer class we are changing to. This script is ' 'experimental and only to be used by advanced users.') parser.add_argument('-i', help='Folder containing the trained model. This folder is the one containing the ' 'fold_X subfolders.') parser.add_argument('-tr', help='Name of the new trainer class') args = parser.parse_args() pretend_to_be_other_trainer(args.i, args.tr)