# Copyright 2020 Division of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from nnunet.evaluation.model_selection.summarize_results_in_one_json import summarize2 from nnunet.paths import network_training_output_dir from batchgenerators.utilities.file_and_folder_operations import * if __name__ == "__main__": summary_output_folder = join(network_training_output_dir, "summary_jsons_fold0_new") maybe_mkdir_p(summary_output_folder) summarize2(['all'], output_dir=summary_output_folder, folds=(0,)) results_csv = join(network_training_output_dir, "summary_fold0.csv") summary_files = subfiles(summary_output_folder, suffix='.json', join=False) with open(results_csv, 'w') as f: for s in summary_files: if s.find("ensemble") == -1: task, network, trainer, plans, validation_folder, folds = s.split("__") else: n1, n2 = s.split("--") n1 = n1[n1.find("ensemble_") + len("ensemble_") :] task = s.split("__")[0] network = "ensemble" trainer = n1 plans = n2 validation_folder = "none" folds = folds[:-len('.json')] results = load_json(join(summary_output_folder, s)) results_mean = results['results']['mean']['mean']['Dice'] results_median = results['results']['median']['mean']['Dice'] f.write("%s,%s,%s,%s,%s,%02.4f,%02.4f\n" % (task, network, trainer, validation_folder, plans, results_mean, results_median)) summary_output_folder = join(network_training_output_dir, "summary_jsons_new") maybe_mkdir_p(summary_output_folder) summarize2(['all'], output_dir=summary_output_folder) results_csv = join(network_training_output_dir, "summary_allFolds.csv") summary_files = subfiles(summary_output_folder, suffix='.json', join=False) with open(results_csv, 'w') as f: for s in summary_files: if s.find("ensemble") == -1: task, network, trainer, plans, validation_folder, folds = s.split("__") else: n1, n2 = s.split("--") n1 = n1[n1.find("ensemble_") + len("ensemble_") :] task = s.split("__")[0] network = "ensemble" trainer = n1 plans = n2 validation_folder = "none" folds = folds[:-len('.json')] results = load_json(join(summary_output_folder, s)) results_mean = results['results']['mean']['mean']['Dice'] results_median = results['results']['median']['mean']['Dice'] f.write("%s,%s,%s,%s,%s,%02.4f,%02.4f\n" % (task, network, trainer, validation_folder, plans, results_mean, results_median))