# # Pyserini: Reproducible IR research with sparse and dense representations # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import os import re import shutil import unittest import json import gzip from random import randint from pyserini.util import download_url, download_prebuilt_index class TestSearchIntegration(unittest.TestCase): def setUp(self): curdir = os.getcwd() if curdir.endswith('clprf'): self.pyserini_root = '../..' else: self.pyserini_root = '.' self.tmp = f'{self.pyserini_root}/integrations/tmp{randint(0, 10000)}' # In the rare event there's a collision if os.path.exists(self.tmp): shutil.rmtree(self.tmp) os.mkdir(self.tmp) os.mkdir(f'{self.tmp}/runs') self.round5_runs = { 'https://ir.nist.gov/covidSubmit/archive/round5/covidex.r5.d2q.1s.gz': '2181ae5b7fe8bafbd3b41700f3ccde02', 'https://ir.nist.gov/covidSubmit/archive/round5/covidex.r5.d2q.2s.gz': 'e61f9b6de5ffbe1b5b82d35216968154', 'https://ir.nist.gov/covidSubmit/archive/round5/covidex.r5.2s.gz': '6e517a5e044d8b7ce983f7e165cf4aeb', 'https://ir.nist.gov/covidSubmit/archive/round5/covidex.r5.1s.gz': 'dc9b4b45494294a8448cf0693f07f7fd' } for url in self.round5_runs: print(f'Verifying stored run at {url}...') filename = url.split('/')[-1] filename = re.sub('\\?dl=1$', '', filename) # Remove the Dropbox 'force download' parameter gzip_filename = '.'.join(filename.split('.')[:-1]) download_url(url, f'{self.tmp}/runs/', md5=self.round5_runs[url], force=True) self.assertTrue(os.path.exists(os.path.join(f'{self.tmp}/runs/', filename))) with gzip.open(f'{self.tmp}/runs/{filename}', 'rb') as f_in: with open(f'{self.tmp}/runs/{gzip_filename}', 'wb') as f_out: shutil.copyfileobj(f_in, f_out) def test_round5(self): tmp_folder_name = self.tmp.split('/')[-1] prebuilt_index_path = download_prebuilt_index('trec-covid-r5-abstract') os.system(f'python {self.pyserini_root}/scripts/classifier_prf/rank_trec_covid.py \ -alpha 0.6 \ -clf lr \ -vectorizer tfidf \ -new_qrels {self.pyserini_root}/tools/topics-and-qrels/qrels.covid-round5.txt \ -base {self.tmp}/runs/covidex.r5.d2q.1s \ -tmp_base {tmp_folder_name} \ -qrels {self.pyserini_root}/tools/topics-and-qrels/qrels.covid-round4-cumulative.txt \ -index {prebuilt_index_path} \ -tag covidex.r5.d2q.1s \ -output {self.tmp}/output.json') with open(f'{self.tmp}/output.json') as json_file: data = json.load(json_file) self.assertEqual("0.3859", data['map']) self.assertEqual("0.8221", data['ndcg']) os.system(f'python {self.pyserini_root}/scripts/classifier_prf/rank_trec_covid.py \ -alpha 0.6 \ -clf lr \ -vectorizer tfidf \ -new_qrels {self.pyserini_root}/tools/topics-and-qrels/qrels.covid-round5.txt \ -base {self.tmp}/runs/covidex.r5.d2q.2s \ -tmp_base {tmp_folder_name} \ -qrels {self.pyserini_root}/tools/topics-and-qrels/qrels.covid-round4-cumulative.txt \ -index {prebuilt_index_path} \ -tag covidex.r5.d2q.2s \ -output {self.tmp}/output.json') with open(f'{self.tmp}/output.json') as json_file: data = json.load(json_file) self.assertEqual("0.3875", data['map']) self.assertEqual("0.8304", data['ndcg']) os.system(f'python {self.pyserini_root}/scripts/classifier_prf/rank_trec_covid.py \ -alpha 0.6 \ -clf lr \ -vectorizer tfidf \ -new_qrels {self.pyserini_root}/tools/topics-and-qrels/qrels.covid-round5.txt \ -base {self.tmp}/runs/covidex.r5.1s \ -tmp_base {tmp_folder_name} \ -qrels {self.pyserini_root}/tools/topics-and-qrels/qrels.covid-round4-cumulative.txt \ -index {prebuilt_index_path} \ -tag covidex.r5.1s \ -output {self.tmp}/output.json') with open(f'{self.tmp}/output.json') as json_file: data = json.load(json_file) self.assertEqual("0.3885", data['map']) self.assertEqual("0.8135", data['ndcg']) os.system(f'python {self.pyserini_root}/scripts/classifier_prf/rank_trec_covid.py \ -alpha 0.6 \ -clf lr \ -vectorizer tfidf \ -new_qrels {self.pyserini_root}/tools/topics-and-qrels/qrels.covid-round5.txt \ -base {self.tmp}/runs/covidex.r5.2s \ -tmp_base {tmp_folder_name} \ -qrels {self.pyserini_root}/tools/topics-and-qrels/qrels.covid-round4-cumulative.txt \ -index {prebuilt_index_path} \ -tag covidex.r5.2s \ -output {self.tmp}/output.json') with open(f'{self.tmp}/output.json') as json_file: data = json.load(json_file) self.assertEqual("0.3922", data['map']) self.assertEqual("0.8311", data['ndcg']) def tearDown(self): shutil.rmtree(self.tmp) if __name__ == '__main__': unittest.main()