# # Pyserini: Reproducible IR research with sparse and dense representations # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import argparse import json import os import sys import numpy as np import faiss import torch from tqdm import tqdm from transformers import BertTokenizer, BertModel # We're going to explicitly use a local installation of Pyserini (as opposed to a pip-installed one). # Comment these lines out to use a pip-installed one instead. sys.path.insert(0, './') sys.path.insert(0, '../pyserini/') def mean_pooling(last_hidden_state, attention_mask): token_embeddings = last_hidden_state input_mask_expanded = attention_mask.unsqueeze(-1).expand(token_embeddings.size()).float() sum_embeddings = torch.sum(token_embeddings * input_mask_expanded, 1) sum_mask = torch.clamp(input_mask_expanded.sum(1), min=1e-9) return sum_embeddings / sum_mask class TctColBertDocumentEncoder(torch.nn.Module): def __init__(self, model_name, tokenizer_name=None, device='cuda:0'): super().__init__() self.device = device self.model = BertModel.from_pretrained(model_name) self.model.to(self.device) self.tokenizer = BertTokenizer.from_pretrained(tokenizer_name or model_name) def encode(self, texts, titles=None): texts = ['[CLS] [D] ' + text for text in texts] max_length = 512 # hardcode for now inputs = self.tokenizer( texts, max_length=max_length, padding="longest", truncation=True, add_special_tokens=False, return_tensors='pt' ) inputs.to(self.device) outputs = self.model(**inputs) embeddings = mean_pooling(outputs["last_hidden_state"][:, 4:, :], inputs['attention_mask'][:, 4:]) return embeddings.detach().cpu().numpy() if __name__ == '__main__': parser = argparse.ArgumentParser() parser.add_argument('--encoder', type=str, help='encoder name or path', required=True) parser.add_argument('--dimension', type=int, help='dimension of passage embeddings', required=False, default=768) parser.add_argument('--corpus', type=str, help='collection file to be encoded (format: jsonl)', required=True) parser.add_argument('--index', type=str, help='directory to store brute force index of corpus', required=True) parser.add_argument('--batch', type=int, help='batch size', default=8) parser.add_argument('--device', type=str, help='device cpu or cuda [cuda:0, cuda:1...]', default='cuda:0') args = parser.parse_args() # tokenizer = AutoTokenizer.from_pretrained(args.encoder) # model = AutoModel.from_pretrained(args.encoder) model = TctColBertDocumentEncoder(model_name=args.encoder, device=args.device) index = faiss.IndexFlatIP(args.dimension) if not os.path.exists(args.index): os.mkdir(args.index) texts = [] with open(os.path.join(args.index, 'docid'), 'w') as id_file: file = os.path.join(args.corpus) print(f'Loading {file}') with open(file, 'r') as corpus: for idx, line in enumerate(tqdm(corpus.readlines())): info = json.loads(line) docid = info['id'] text = info['contents'] id_file.write(f'{docid}\n') # docs can have many \n ... fields = text.split('\n') title, text = fields[1], fields[2:] if len(text) > 1: text = ' '.join(text) text = f"{title} {text}" texts.append(text.lower()) for idx in tqdm(range(0, len(texts), args.batch)): text_batch = texts[idx: idx+args.batch] embeddings = model.encode(text_batch) index.add(np.array(embeddings)) faiss.write_index(index, os.path.join(args.index, 'index'))