# # Pyserini: Reproducible IR research with sparse and dense representations # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import hashlib import os import shutil import unittest from random import randint from pyserini.util import download_url # The purpose of this test case is that, up through and including round 4, the TREC-COVID fusion baselines were # generated using trectools [1]. This test case ensures that our own internal fusion tools generate *exactly* the # same output (based on MD5 checksums). # # [1] https://github.com/joaopalotti/trectools class TestRRF(unittest.TestCase): def setUp(self): self.runs = { 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round3/anserini.covid-r3.abstract.qq.bm25.txt': 'd08d85c87e30d6c4abf54799806d282f', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round3/anserini.covid-r3.abstract.qdel.bm25.txt': 'd552dff90995cd860a5727637f0be4d1', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round3/anserini.covid-r3.full-text.qq.bm25.txt': '6c9f4c09d842b887262ca84d61c61a1f', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round3/anserini.covid-r3.full-text.qdel.bm25.txt': 'c5f9db7733c72eea78ece2ade44d3d35', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round3/anserini.covid-r3.paragraph.qq.bm25.txt': '872673b3e12c661748d8899f24d3ba48', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round3/anserini.covid-r3.paragraph.qdel.bm25.txt': 'c1b966e4c3f387b6810211f339b35852', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round4/anserini.covid-r4.abstract.qq.bm25.txt': '56ac5a0410e235243ca6e9f0f00eefa1', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round4/anserini.covid-r4.abstract.qdel.bm25.txt': '115d6d2e308b47ffacbc642175095c74', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round4/anserini.covid-r4.full-text.qq.bm25.txt': 'af0d10a5344f4007e6781e8d2959eb54', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round4/anserini.covid-r4.full-text.qdel.bm25.txt': '594d469b8f45cf808092a3d8e870eaf5', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round4/anserini.covid-r4.paragraph.qq.bm25.txt': '6f468b7b60aaa05fc215d237b5475aec', 'https://git.uwaterloo.ca/jimmylin/covidex-trec-covid-runs/raw/master/round4/anserini.covid-r4.paragraph.qdel.bm25.txt': 'b7b39629c12573ee0bfed8687dacc743', } self.tmp = f'tmp{randint(0, 10000)}' # In the rare event there's a collision if os.path.exists(self.tmp): shutil.rmtree(self.tmp) os.mkdir(self.tmp) for url in self.runs: print(f'Verifying stored run at {url}...') filename = url.split('/')[-1] download_url(url, self.tmp, md5=self.runs[url], force=True) self.assertTrue(os.path.exists(os.path.join(self.tmp, filename))) print('') def test_round3_fusion_runs(self): os.system(f'python -m pyserini.fusion --method rrf --runs ' + f'{self.tmp}/anserini.covid-r3.abstract.qq.bm25.txt ' + f'{self.tmp}/anserini.covid-r3.full-text.qq.bm25.txt ' + f'{self.tmp}/anserini.covid-r3.paragraph.qq.bm25.txt ' + f' --output {self.tmp}/anserini.covid-r3.fusion1.txt ' + f'--runtag reciprocal_rank_fusion_k=60 --k 100000') with open(f'{self.tmp}/anserini.covid-r3.fusion1.txt', 'rb') as f: md5 = hashlib.md5(f.read()).hexdigest() self.assertEqual('61cbd73c6e60ba44f18ce967b5b0e5b3', md5) os.system(f'python -m pyserini.fusion --method rrf --runs ' + f'{self.tmp}/anserini.covid-r3.abstract.qdel.bm25.txt ' + f'{self.tmp}/anserini.covid-r3.full-text.qdel.bm25.txt ' + f'{self.tmp}/anserini.covid-r3.paragraph.qdel.bm25.txt ' + f' --output {self.tmp}/anserini.covid-r3.fusion2.txt ' + f'--runtag reciprocal_rank_fusion_k=60 --k 100000') with open(f'{self.tmp}/anserini.covid-r3.fusion2.txt', 'rb') as f: md5 = hashlib.md5(f.read()).hexdigest() self.assertEqual('d7eabf3dab840104c88de925e918fdab', md5) def test_round4_fusion_runs(self): os.system(f'python -m pyserini.fusion --method rrf --runs ' + f'{self.tmp}/anserini.covid-r4.abstract.qq.bm25.txt ' + f'{self.tmp}/anserini.covid-r4.full-text.qq.bm25.txt ' + f'{self.tmp}/anserini.covid-r4.paragraph.qq.bm25.txt ' + f' --output {self.tmp}/anserini.covid-r4.fusion1.txt ' + f'--runtag reciprocal_rank_fusion_k=60 --k 100000') with open(f'{self.tmp}/anserini.covid-r4.fusion1.txt', 'rb') as f: md5 = hashlib.md5(f.read()).hexdigest() self.assertEqual('8ae9d1fca05bd1d9bfe7b24d1bdbe270', md5) os.system(f'python -m pyserini.fusion --method rrf --runs ' + f'{self.tmp}/anserini.covid-r4.abstract.qdel.bm25.txt ' + f'{self.tmp}/anserini.covid-r4.full-text.qdel.bm25.txt ' + f'{self.tmp}/anserini.covid-r4.paragraph.qdel.bm25.txt ' + f' --output {self.tmp}/anserini.covid-r4.fusion2.txt ' + f'--runtag reciprocal_rank_fusion_k=60 --k 100000') with open(f'{self.tmp}/anserini.covid-r4.fusion2.txt', 'rb') as f: md5 = hashlib.md5(f.read()).hexdigest() self.assertEqual('e1894209c815c96c6ddd4cacb578261a', md5) def tearDown(self): shutil.rmtree(self.tmp) if __name__ == '__main__': unittest.main()