import torch import pandas as pd from transformers import ( AdamW, T5ForConditionalGeneration, T5TokenizerFast as T5Tokenizer, MT5Tokenizer, MT5ForConditionalGeneration, ByT5Tokenizer, ) from torch.utils.data import Dataset, DataLoader import pytorch_lightning as pl from pytorch_lightning.loggers import MLFlowLogger, WandbLogger from pytorch_lightning import Trainer from pytorch_lightning.callbacks.early_stopping import EarlyStopping from pytorch_lightning import LightningDataModule from pytorch_lightning import LightningModule from datasets import load_metric from tqdm.auto import tqdm # from dagshub.pytorch_lightning import DAGsHubLogger torch.cuda.empty_cache() pl.seed_everything(42) class DataModule(Dataset): """ Data Module for pytorch """ def __init__( self, data: pd.DataFrame, tokenizer: T5Tokenizer, source_max_token_len: int = 512, target_max_token_len: int = 512, ): """ :param data: :param tokenizer: :param source_max_token_len: :param target_max_token_len: """ self.data = data self.target_max_token_len = target_max_token_len self.source_max_token_len = source_max_token_len self.tokenizer = tokenizer def __len__(self): return len(self.data) def __getitem__(self, index: int): data_row = self.data.iloc[index] input_encoding = self.tokenizer( data_row["input_text"], max_length=self.source_max_token_len, padding="max_length", truncation=True, return_attention_mask=True, add_special_tokens=True, return_tensors="pt", ) output_encoding = self.tokenizer( data_row["output_text"], max_length=self.target_max_token_len, padding="max_length", truncation=True, return_attention_mask=True, add_special_tokens=True, return_tensors="pt", ) labels = output_encoding["input_ids"] labels[ labels == 0 ] = -100 return dict( keywords=data_row["input_text"], text=data_row["output_text"], keywords_input_ids=input_encoding["input_ids"].flatten(), keywords_attention_mask=input_encoding["attention_mask"].flatten(), labels=labels.flatten(), labels_attention_mask=output_encoding["attention_mask"].flatten(), ) class PLDataModule(LightningDataModule): def __init__( self, train_df: pd.DataFrame, test_df: pd.DataFrame, tokenizer: T5Tokenizer, source_max_token_len: int = 512, target_max_token_len: int = 512, batch_size: int = 4, split: float = 0.1, num_workers: int = 2 ): """ :param data_df: :param tokenizer: :param source_max_token_len: :param target_max_token_len: :param batch_size: :param split: """ super().__init__() self.train_df = train_df self.test_df = test_df self.split = split self.batch_size = batch_size self.target_max_token_len = target_max_token_len self.source_max_token_len = source_max_token_len self.tokenizer = tokenizer self.num_workers = num_workers def setup(self, stage=None): self.train_dataset = DataModule( self.train_df, self.tokenizer, self.source_max_token_len, self.target_max_token_len, ) self.test_dataset = DataModule( self.test_df, self.tokenizer, self.source_max_token_len, self.target_max_token_len, ) def train_dataloader(self): """ training dataloader """ return DataLoader( self.train_dataset, batch_size=self.batch_size, shuffle=True, num_workers=self.num_workers ) def test_dataloader(self): """ test dataloader """ return DataLoader( self.test_dataset, batch_size=self.batch_size, shuffle=False, num_workers=self.num_workers ) def val_dataloader(self): """ validation dataloader """ return DataLoader( self.test_dataset, batch_size=self.batch_size, shuffle=False, num_workers=self.num_workers ) class LightningModel(LightningModule): """ PyTorch Lightning Model class""" def __init__(self, tokenizer, model, learning_rate, adam_epsilon, weight_decay, output: str = "outputs"): """ initiates a PyTorch Lightning Model Args: tokenizer : T5 tokenizer model : T5 model output (str, optional): output directory to save model checkpoints. Defaults to "outputs". """ super().__init__() self.model = model self.tokenizer = tokenizer self.output = output self.learning_rate = learning_rate self.adam_epsilon = adam_epsilon self.weight_decay = weight_decay def forward(self, input_ids, attention_mask, decoder_attention_mask, labels=None): """ forward step """ output = self.model( input_ids, attention_mask=attention_mask, labels=labels, decoder_attention_mask=decoder_attention_mask, ) return output.loss, output.logits def training_step(self, batch, batch_size): """ training step """ input_ids = batch["keywords_input_ids"] attention_mask = batch["keywords_attention_mask"] labels = batch["labels"] labels_attention_mask = batch["labels_attention_mask"] loss, outputs = self( input_ids=input_ids, attention_mask=attention_mask, decoder_attention_mask=labels_attention_mask, labels=labels, ) self.log("train_loss", loss, prog_bar=True, logger=True) return loss def validation_step(self, batch, batch_size): """ validation step """ input_ids = batch["keywords_input_ids"] attention_mask = batch["keywords_attention_mask"] labels = batch["labels"] labels_attention_mask = batch["labels_attention_mask"] loss, outputs = self( input_ids=input_ids, attention_mask=attention_mask, decoder_attention_mask=labels_attention_mask, labels=labels, ) self.log("val_loss", loss, prog_bar=True, logger=True) return loss def test_step(self, batch, batch_size): """ test step """ input_ids = batch["keywords_input_ids"] attention_mask = batch["keywords_attention_mask"] labels = batch["labels"] labels_attention_mask = batch["labels_attention_mask"] loss, outputs = self( input_ids=input_ids, attention_mask=attention_mask, decoder_attention_mask=labels_attention_mask, labels=labels, ) self.log("test_loss", loss, prog_bar=True, logger=True) return loss def configure_optimizers(self): """ configure optimizers """ model = self.model no_decay = ["bias", "LayerNorm.weight"] optimizer_grouped_parameters = [ { "params": [p for n, p in model.named_parameters() if not any(nd in n for nd in no_decay)], "weight_decay": self.weight_decay, }, { "params": [p for n, p in model.named_parameters() if any(nd in n for nd in no_decay)], "weight_decay": 0.0, }, ] optimizer = AdamW(optimizer_grouped_parameters, lr=self.learning_rate, eps=self.adam_epsilon) self.opt = optimizer return [optimizer] class Summarization: """ Custom Summarization class """ def __init__(self) -> None: """ initiates Summarization class """ pass def from_pretrained(self, model_type="t5", model_name="t5-base") -> None: """ loads T5/MT5 Model model for training/finetuning Args: model_name (str, optional): exact model architecture name, "t5-base" or "t5-large". Defaults to "t5-base". :param model_type: """ if model_type == "t5": self.tokenizer = T5Tokenizer.from_pretrained(f"{model_name}") self.model = T5ForConditionalGeneration.from_pretrained( f"{model_name}", return_dict=True ) elif model_type == "mt5": self.tokenizer = MT5Tokenizer.from_pretrained(f"{model_name}") self.model = MT5ForConditionalGeneration.from_pretrained( f"{model_name}", return_dict=True ) elif model_type == "byt5": self.tokenizer = ByT5Tokenizer.from_pretrained(f"{model_name}") self.model = T5ForConditionalGeneration.from_pretrained( f"{model_name}", return_dict=True ) def train( self, train_df: pd.DataFrame, eval_df: pd.DataFrame, source_max_token_len: int = 512, target_max_token_len: int = 512, batch_size: int = 8, max_epochs: int = 5, use_gpu: bool = True, outputdir: str = "models", early_stopping_patience_epochs: int = 0, # 0 to disable early stopping feature learning_rate: float = 0.0001, adam_epsilon: float = 0.01, num_workers: int = 2, weight_decay: float = 0.0001 ): """ trains T5/MT5 model on custom dataset Args: train_df (pd.DataFrame): training datarame. Dataframe must have 2 column --> "input_text" and "output_text" eval_df ([type], optional): validation datarame. Dataframe must have 2 column --> "input_text" and "output_text" source_max_token_len (int, optional): max token length of source text. Defaults to 512. target_max_token_len (int, optional): max token length of target text. Defaults to 512. batch_size (int, optional): batch size. Defaults to 8. max_epochs (int, optional): max number of epochs. Defaults to 5. use_gpu (bool, optional): if True, model uses gpu for training. Defaults to True. outputdir (str, optional): output directory to save model checkpoints. Defaults to "outputs". early_stopping_patience_epochs (int, optional): monitors val_loss on epoch end and stops training, if val_loss does not improve after the specied number of epochs. set 0 to disable early stopping. Defaults to 0 (disabled) :param learning_rate: :param adam_epsilon: """ self.target_max_token_len = target_max_token_len self.data_module = PLDataModule( train_df, eval_df, self.tokenizer, batch_size=batch_size, source_max_token_len=source_max_token_len, target_max_token_len=target_max_token_len, num_workers=num_workers, ) self.T5Model = LightningModel( tokenizer=self.tokenizer, model=self.model, output=outputdir, learning_rate=learning_rate, adam_epsilon=adam_epsilon, weight_decay=weight_decay ) MLlogger = MLFlowLogger(experiment_name="Summarization", tracking_uri="https://dagshub.com/gagan3012/summarization.mlflow") WandLogger = WandbLogger(project="summarization-dagshub") # logger = DAGsHubLogger(metrics_path='reports/training_metrics.txt') early_stop_callback = ( [ EarlyStopping( monitor="val_loss", min_delta=0.00, patience=early_stopping_patience_epochs, verbose=True, mode="min", ) ] if early_stopping_patience_epochs > 0 else None ) gpus = -1 if use_gpu and torch.cuda.is_available() else 0 trainer = Trainer( logger=[WandLogger, MLlogger], callbacks=early_stop_callback, max_epochs=max_epochs, gpus=gpus, progress_bar_refresh_rate=5, ) trainer.fit(self.T5Model, self.data_module) def load_model( self, model_type: str = 't5', model_dir: str = "models", use_gpu: bool = False ): """ loads a checkpoint for inferencing/prediction Args: model_type (str, optional): "t5" or "mt5". Defaults to "t5". model_dir (str, optional): path to model directory. Defaults to "outputs". use_gpu (bool, optional): if True, model uses gpu for inferencing/prediction. Defaults to True. """ if model_type == "t5": self.tokenizer = T5Tokenizer.from_pretrained(f"{model_dir}") self.model = T5ForConditionalGeneration.from_pretrained( f"{model_dir}", return_dict=True ) elif model_type == "mt5": self.tokenizer = MT5Tokenizer.from_pretrained(f"{model_dir}") self.model = MT5ForConditionalGeneration.from_pretrained( f"{model_dir}", return_dict=True ) elif model_type == "byt5": self.tokenizer = ByT5Tokenizer.from_pretrained(f"{model_dir}") self.model = T5ForConditionalGeneration.from_pretrained( f"{model_dir}", return_dict=True ) if use_gpu: if torch.cuda.is_available(): self.device = torch.device("cuda") else: raise Exception("exception ---> no gpu found. set use_gpu=False, to use CPU") else: self.device = torch.device("cpu") self.model = self.model.to(self.device) def save_model( self, model_dir="models" ): """ Save model to dir :param model_dir: :return: model is saved """ path = f"{model_dir}" self.tokenizer.save_pretrained(path) self.model.save_pretrained(path) def predict( self, source_text: str, max_length: int = 512, num_return_sequences: int = 1, num_beams: int = 2, top_k: int = 50, top_p: float = 0.95, do_sample: bool = True, repetition_penalty: float = 2.5, length_penalty: float = 1.0, early_stopping: bool = True, skip_special_tokens: bool = True, clean_up_tokenization_spaces: bool = True, ): """ generates prediction for T5/MT5 model Args: source_text (str): any text for generating predictions max_length (int, optional): max token length of prediction. Defaults to 512. num_return_sequences (int, optional): number of predictions to be returned. Defaults to 1. num_beams (int, optional): number of beams. Defaults to 2. top_k (int, optional): Defaults to 50. top_p (float, optional): Defaults to 0.95. do_sample (bool, optional): Defaults to True. repetition_penalty (float, optional): Defaults to 2.5. length_penalty (float, optional): Defaults to 1.0. early_stopping (bool, optional): Defaults to True. skip_special_tokens (bool, optional): Defaults to True. clean_up_tokenization_spaces (bool, optional): Defaults to True. Returns: list[str]: returns predictions """ input_ids = self.tokenizer.encode( source_text, return_tensors="pt", add_special_tokens=True ) input_ids = input_ids.to(self.device) generated_ids = self.model.generate( input_ids=input_ids, num_beams=num_beams, max_length=max_length, repetition_penalty=repetition_penalty, length_penalty=length_penalty, early_stopping=early_stopping, top_p=top_p, top_k=top_k, num_return_sequences=num_return_sequences, ) preds = self.tokenizer.decode( generated_ids[0], skip_special_tokens=skip_special_tokens, clean_up_tokenization_spaces=clean_up_tokenization_spaces, ) return preds def evaluate( self, test_df: pd.DataFrame, metrics: str = "rouge" ): metric = load_metric(metrics) input_text = test_df['input_text'] references = test_df['output_text'] references = references.to_list() predictions = [self.predict(x) for x in tqdm(input_text)] results = metric.compute(predictions=predictions, references=references) output = { 'Rouge 1': { 'Rouge_1 Low Precision': results["rouge1"].low.precision, 'Rouge_1 Low recall': results["rouge1"].low.recall, 'Rouge_1 Low F1': results["rouge1"].low.fmeasure, 'Rouge_1 Mid Precision': results["rouge1"].mid.precision, 'Rouge_1 Mid recall': results["rouge1"].mid.recall, 'Rouge_1 Mid F1': results["rouge1"].mid.fmeasure, 'Rouge_1 High Precision': results["rouge1"].high.precision, 'Rouge_1 High recall': results["rouge1"].high.recall, 'Rouge_1 High F1': results["rouge1"].high.fmeasure, }, 'Rouge 2': { 'Rouge_2 Low Precision': results["rouge2"].low.precision, 'Rouge_2 Low recall': results["rouge2"].low.recall, 'Rouge_2 Low F1': results["rouge2"].low.fmeasure, 'Rouge_2 Mid Precision': results["rouge2"].mid.precision, 'Rouge_2 Mid recall': results["rouge2"].mid.recall, 'Rouge_2 Mid F1': results["rouge2"].mid.fmeasure, 'Rouge_2 High Precision': results["rouge2"].high.precision, 'Rouge_2 High recall': results["rouge2"].high.recall, 'Rouge_2 High F1': results["rouge2"].high.fmeasure, }, 'Rouge L': { 'Rouge_L Low Precision': results["rougeL"].low.precision, 'Rouge_L Low recall': results["rougeL"].low.recall, 'Rouge_L Low F1': results["rougeL"].low.fmeasure, 'Rouge_L Mid Precision': results["rougeL"].mid.precision, 'Rouge_L Mid recall': results["rougeL"].mid.recall, 'Rouge_L Mid F1': results["rougeL"].mid.fmeasure, 'Rouge_L High Precision': results["rougeL"].high.precision, 'Rouge_L High recall': results["rougeL"].high.recall, 'Rouge_L High F1': results["rougeL"].high.fmeasure, }, 'rougeLsum': { 'rougeLsum Low Precision': results["rougeLsum"].low.precision, 'rougeLsum Low recall': results["rougeLsum"].low.recall, 'rougeLsum Low F1': results["rougeLsum"].low.fmeasure, 'rougeLsum Mid Precision': results["rougeLsum"].mid.precision, 'rougeLsum Mid recall': results["rougeLsum"].mid.recall, 'rougeLsum Mid F1': results["rougeLsum"].mid.fmeasure, 'rougeLsum High Precision': results["rougeLsum"].high.precision, 'rougeLsum High recall': results["rougeLsum"].high.recall, 'rougeLsum High F1': results["rougeLsum"].high.fmeasure, } } return output