chemCPA / environment.yml
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name: chemCPA
channels:
- pytorch
- defaults
- conda-forge
dependencies:
- python=3.9
- adjusttext
- matplotlib
- numpy
- pandas
- scanpy
- scipy
- seaborn
- scikit-learn
- submitit
- jupyter
- jupytext
- pytorch::pytorch=1.12.1
- cudatoolkit=11.3
- lightning
- torchmetrics
- h5py
- dglteam::dgl-cuda11.3
- deepchem
- rdkit=2021.09.2
- pytest
- pre-commit
- seml
- py-spy
- fastparquet
- wandb
- hydra-core
# UMAP
- umap-learn
- datashader
- bokeh
- holoviews
- colorcet
- scikit-image
- pip
- pip:
- pyarrow
- tensorflow
- dgllife
- scgen
- wandb