import protac_degradation_predictor as pdp from typing import Dict, List, Literal import difflib import torch import numpy as np from rdkit import Chem import gradio as gr def gradio_app( protac_smiles: str | List[str], e3_ligase: str | List[str], target_uniprot: str | List[str], cell_line: str | List[str], use_models_from_cv: bool = False, ) -> Dict[str, np.ndarray]: device = torch.device('cuda' if torch.cuda.is_available() else 'cpu') avail_uniprots = pdp.avail_uniprots() avail_cells = pdp.avail_cell_lines() if target_uniprot not in avail_uniprots: suggestions = difflib.get_close_matches(target_uniprot, avail_uniprots, n=3, cutoff=0.5) suggestion_text = "Did you mean:" + ", ".join(suggestions) + "?" if suggestions else "No close matches found." raise gr.Error(f"Invalid Uniprot ID. {suggestion_text}", duration=None) if cell_line not in avail_cells: suggestions = difflib.get_close_matches(cell_line, avail_cells, n=3, cutoff=0.5) suggestion_text = "Did you mean:" + ", ".join(suggestions) + "?" if suggestions else "No close matches found." raise gr.Error(f"Invalid Cell Line. {suggestion_text}", duration=None) prediction = pdp.get_protac_active_proba( protac_smiles, e3_ligase, target_uniprot, cell_line, device=device, use_models_from_cv=use_models_from_cv, ) mean_pred = {"Active": prediction['mean'], "Inactive": 1 - prediction['mean']} majvote_pred = "Active" if prediction['majority_vote'] else "Inactive" return mean_pred, majvote_pred demo = gr.Interface( fn=gradio_app, inputs=[ gr.Textbox(placeholder="PROTAC SMILES", label="PROTAC SMILES"), gr.Dropdown(pdp.avail_e3_ligases(), label="E3 ligase"), gr.Textbox(placeholder="E.g., Q92769", label="Target Uniprot"), gr.Textbox(placeholder="E.g., HeLa", label="Cell line"), gr.Checkbox(label="Use models trained during cross-validation"), ], outputs=[gr.Label(label="Average probability (confidence)"), gr.Label(label="Majority vote prediction")], title="PROTAC Degradation Predictor", examples=[ [ "Cc1ncsc1-c1ccc(CNC(=O)[C@@H]2C[C@@H](O)CN2C(=O)[C@@H](NC(=O)COCCCCCCCCCOCC(=O)Nc2ccc(C(=O)Nc3ccc(F)cc3N)cc2)C(C)(C)C)cc1", "VHL", "Q92769", "HeLa", ], ], description="Predict whether a PROTAC is active or inactive.", ) demo.launch()