diff --git "a/notebooks/protac_degradation_predictor_tutorial.ipynb" "b/notebooks/protac_degradation_predictor_tutorial.ipynb" --- "a/notebooks/protac_degradation_predictor_tutorial.ipynb" +++ "b/notebooks/protac_degradation_predictor_tutorial.ipynb" @@ -5,7 +5,7 @@ "colab": { "provenance": [], "gpuType": "T4", - "authorship_tag": "ABX9TyOt3D5PCiLD7pcKR5u8YmMF", + "authorship_tag": "ABX9TyMLv05e/gGMLdaS7UI/GPTc", "include_colab_link": true }, "kernelspec": { @@ -52,22 +52,37 @@ }, { "cell_type": "code", - "execution_count": 22, + "execution_count": 1, "metadata": { "colab": { "base_uri": "https://localhost:8080/" }, "id": "DNmrlIcqvOu1", - "outputId": "45d1234d-52ae-4adc-c3ac-dc7b58471ea9" + "outputId": "1c06335e-0d72-4790-f575-679b084a88a6" }, "outputs": [ { "output_type": "stream", "name": "stdout", "text": [ - "fatal: destination path 'PROTAC-Degradation-Predictor' already exists and is not an empty directory.\n", + "Cloning into 'PROTAC-Degradation-Predictor'...\n", + "remote: Enumerating objects: 1052, done.\u001b[K\n", + "remote: Counting objects: 100% (262/262), done.\u001b[K\n", + "remote: Compressing objects: 100% (136/136), done.\u001b[K\n", + "remote: Total 1052 (delta 117), reused 244 (delta 102), pack-reused 790\u001b[K\n", + "Receiving objects: 100% (1052/1052), 284.74 MiB | 13.45 MiB/s, done.\n", + "Resolving deltas: 100% (523/523), done.\n", + "Updating files: 100% (156/156), done.\n", " Preparing metadata (setup.py) ... \u001b[?25l\u001b[?25hdone\n", - " Building wheel for protac-degradation-predictor (setup.py) ... \u001b[?25l\u001b[?25hdone\n" + "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m802.3/802.3 kB\u001b[0m \u001b[31m3.5 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", + "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m34.9/34.9 MB\u001b[0m \u001b[31m21.0 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", + "\u001b[?25h\u001b[33mWARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/optuna/\u001b[0m\u001b[33m\n", + "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m380.1/380.1 kB\u001b[0m \u001b[31m20.4 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", + "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m868.8/868.8 kB\u001b[0m \u001b[31m31.0 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", + "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m233.4/233.4 kB\u001b[0m \u001b[31m20.1 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", + "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m21.3/21.3 MB\u001b[0m \u001b[31m30.5 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", + "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m78.6/78.6 kB\u001b[0m \u001b[31m5.8 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", + "\u001b[?25h Building wheel for protac-degradation-predictor (setup.py) ... \u001b[?25l\u001b[?25hdone\n" ] } ], @@ -97,7 +112,7 @@ "metadata": { "id": "hkucKE6SKweE" }, - "execution_count": 36, + "execution_count": 2, "outputs": [] }, { @@ -123,9 +138,9 @@ "height": 627 }, "id": "_jzpk3GcKjqI", - "outputId": "9c8d6616-7f14-49ee-ba8b-e3056f9613ef" + "outputId": "7b02b3ff-a85f-40b0-b2ec-dc4c72f92fbf" }, - "execution_count": 29, + "execution_count": 3, "outputs": [ { "output_type": "display_data", @@ -184,7 +199,7 @@ ], "text/html": [ "\n", - "