''' This file scores an argument prediction file from predicted triggers. ''' import os import json import argparse import re from copy import deepcopy from collections import defaultdict from tqdm import tqdm import spacy from utils import load_ontology,find_arg_span, compute_f1, get_entity_span, find_head, WhitespaceTokenizer nlp = spacy.load('en_core_web_sm') nlp.tokenizer = WhitespaceTokenizer(nlp.vocab) ''' Scorer for argument extraction on ACE & KAIROS. For the RAMS dataset, the official scorer is used. Outputs: Head F1 Coref F1 ''' print("pipeliner.py") def clean_span(ex, span): tokens = ex['tokens'] if tokens[span[0]].lower() in {'the', 'an', 'a'}: if span[0]!=span[1]: return (span[0]+1, span[1]) return span def extract_args_from_template(ex, template, ontology_dict,): # extract argument text template_words = template.strip().split() predicted_words = ex['predicted'].strip().split() predicted_args = defaultdict(list) # each argname may have multiple participants t_ptr= 0 p_ptr= 0 evt_type = ex['event']['event_type'] while t_ptr < len(template_words) and p_ptr < len(predicted_words): if re.match(r'<(arg\d+)>', template_words[t_ptr]): m = re.match(r'<(arg\d+)>', template_words[t_ptr]) arg_num = m.group(1) try: arg_name = ontology_dict[evt_type][arg_num] except KeyError: print(evt_type) exit() if predicted_words[p_ptr] == '': # missing argument p_ptr +=1 t_ptr +=1 else: arg_start = p_ptr while (p_ptr < len(predicted_words)) and ((t_ptr== len(template_words)-1) or (predicted_words[p_ptr] != template_words[t_ptr+1])): p_ptr+=1 arg_text = predicted_words[arg_start:p_ptr] predicted_args[arg_name].append(arg_text) t_ptr+=1 # aligned else: t_ptr+=1 p_ptr+=1 return predicted_args def create_coref_mapping(args): ''' Coref mapping for the entire data split. ''' coref_mapping = defaultdict(dict) # span to canonical entity_id mapping for each doc if args.dataset == 'KAIROS' and args.coref_file: with open(args.coref_file, 'r') as f, open(args.test_file, 'r') as test_reader: for line, test_line in zip(f, test_reader): coref_ex = json.loads(line) ex = json.loads(test_line) doc_id = coref_ex['doc_key'] for cluster, name in zip(coref_ex['clusters'], coref_ex['informative_mentions']): canonical = cluster[0] for ent_id in cluster: ent_span = get_entity_span(ex, ent_id) ent_span = (ent_span[0], ent_span[1]-1) coref_mapping[doc_id][ent_span] = canonical # this does not include singleton clusters else: # for the ACE dataset with open(args.test_file) as f: for line in f: doc=json.loads(line.strip()) doc_id = doc['sent_id'] for entity in doc['entity_mentions']: mention_id = entity['id'] ent_id = '-'.join(mention_id.split('-')[:-1]) coref_mapping[doc_id][(entity['start'], entity['end']-1)] = ent_id # all indexes are inclusive return coref_mapping if __name__ == '__main__': parser = argparse.ArgumentParser() parser.add_argument('--gen-file',type=str,default='checkpoints/gen-all-ACE-freq-pipeline/predictions.jsonl' ) parser.add_argument('--tgr-pred-file', type=str,default='data/ace/zs-freq-10/pred.oneie.json') parser.add_argument('--test-file', type=str,default='data/ace/zs-freq-10/test.oneie.json') parser.add_argument('--coref-file', type=str) parser.add_argument('--head-only', action='store_true') parser.add_argument('--coref', action='store_true', default=True) parser.add_argument('--dataset',type=str, default='ACE', choices=['ACE', 'KAIROS']) parser.add_argument('--seen-types', type=str) args = parser.parse_args() ontology_dict = load_ontology(dataset=args.dataset) seen_types = set() if args.seen_types: with open(args.seen_types) as f: for line in f: e = line.strip() assert(e in ontology_dict) seen_types.add( e) if args.dataset == 'KAIROS' and not args.coref_file: print('coreference file needed for the KAIROS dataset.') raise ValueError coref_mapping = create_coref_mapping(args) examples = {} doc2ex = defaultdict(list) # a document contains multiple events with open(args.gen_file,'r') as f: for lidx, line in enumerate(f): # this solution relies on keeping the exact same order pred = json.loads(line.strip()) examples[lidx] = { 'predicted': pred['predicted'], 'gold': pred['gold'], 'doc_id': pred['doc_key'] } doc2ex[pred['doc_key']].append(lidx) with open(args.tgr_pred_file, 'r') as f: for line in f: doc = json.loads(line.strip()) if 'sent_id' in doc.keys(): doc_id = doc['sent_id'] # print('evaluating on sentence level') else: doc_id = doc['doc_id'] # print('evaluating on document level') for idx, eid in enumerate(doc2ex[doc_id]): examples[eid]['tokens'] = doc['tokens'] try: examples[eid]['event'] = doc['event_mentions'][idx] examples[eid]['entity_mentions'] = doc['entity_mentions'] except IndexError: print(doc_id) exit() gold_evt_dict ={} # doc_key -> list of event_mentions with open(args.test_file, 'r') as f: for line in f: doc = json.loads(line.strip()) if 'sent_id' in doc.keys(): doc_id = doc['sent_id'] # print('evaluating on sentence level') else: doc_id = doc['doc_id'] # print('evaluating on document level') gold_evt_dict[doc_id] = doc['event_mentions'] gold_arg_num =0 # directly compute the number of gold args for event_list in gold_evt_dict.values(): for e in event_list: if e['event_type'] not in seen_types: gold_arg_num += len(e['arguments']) pred_arg_num =0 arg_idn_num =0 arg_class_num =0 arg_idn_coref_num =0 arg_class_coref_num =0 for ex in tqdm(examples.values()): # an example is a single predicted event context_words = ex['tokens'] doc_id = ex['doc_id'] doc = None if args.head_only: doc = nlp(' '.join(context_words)) # get template evt_type = ex['event']['event_type'] if evt_type in seen_types: continue if evt_type not in ontology_dict: continue template = ontology_dict[evt_type]['template'] # extract argument text predicted_args = extract_args_from_template(ex,template, ontology_dict) # get trigger # extract argument span trigger_start = ex['event']['trigger']['start'] trigger_end = ex['event']['trigger']['end'] predicted_set = set() for argname in predicted_args: for entity in predicted_args[argname]:# this argument span is inclusive arg_span = find_arg_span(entity, context_words, trigger_start, trigger_end, head_only=args.head_only, doc=doc) if arg_span:# if None means hullucination predicted_set.add((arg_span[0], arg_span[1], evt_type, argname)) else: new_entity = [] for w in entity: if w == 'and' and len(new_entity) >0: arg_span = find_arg_span(new_entity, context_words, trigger_start, trigger_end, head_only=args.head_only, doc=doc) if arg_span: predicted_set.add((arg_span[0], arg_span[1], evt_type, argname)) new_entity = [] else: new_entity.append(w) if len(new_entity) >0: # last entity arg_span = find_arg_span(new_entity, context_words, trigger_start, trigger_end, head_only=args.head_only, doc=doc) if arg_span: predicted_set.add((arg_span[0], arg_span[1], evt_type, argname)) gold_set = set() gold_canonical_set = set() # set of canonical mention ids, singleton mentions will not be here # check if this event is in the gold events for e in gold_evt_dict[doc_id]: if (e['event_type'] == evt_type) and (e['trigger'] == ex['event']['trigger']): # trigger extraction is correct for arg in e['arguments']: argname = arg['role'] entity_id = arg['entity_id'] span = get_entity_span(ex, entity_id) span = (span[0], span[1]-1) span = clean_span(ex, span) # clean up span by removing `a` `the` if args.head_only and span[0]!=span[1]: span = find_head(span[0], span[1], doc=doc) gold_set.add((span[0], span[1], evt_type, argname)) if span in coref_mapping[doc_id]: canonical_id = coref_mapping[doc_id][span] gold_canonical_set.add((canonical_id, evt_type, argname)) pred_arg_num += len(predicted_set) # check matches for pred_arg in predicted_set: arg_start, arg_end, event_type, role = pred_arg gold_idn = {item for item in gold_set if item[0] == arg_start and item[1] == arg_end and item[2] == event_type} if gold_idn: arg_idn_num += 1 gold_class = {item for item in gold_idn if item[-1] == role} if gold_class: arg_class_num += 1 elif args.coref:# check coref matches arg_start, arg_end, event_type, role = pred_arg span = (arg_start, arg_end) if span in coref_mapping[doc_id]: canonical_id = coref_mapping[doc_id][span] gold_idn_coref = {item for item in gold_canonical_set if item[0] == canonical_id and item[1] == event_type} if gold_idn_coref: arg_idn_coref_num +=1 gold_class_coref = {item for item in gold_idn_coref if item[2] == role} if gold_class_coref: arg_class_coref_num +=1 if args.head_only: print('Evaluation by matching head words only....') role_id_prec, role_id_rec, role_id_f = compute_f1( pred_arg_num, gold_arg_num, arg_idn_num) role_prec, role_rec, role_f = compute_f1( pred_arg_num, gold_arg_num, arg_class_num) print('Role identification: P: {:.2f}, R: {:.2f}, F: {:.2f}'.format( role_id_prec * 100.0, role_id_rec * 100.0, role_id_f * 100.0)) print('Role: P: {:.2f}, R: {:.2f}, F: {:.2f}'.format( role_prec * 100.0, role_rec * 100.0, role_f * 100.0)) if args.coref: role_id_prec, role_id_rec, role_id_f = compute_f1( pred_arg_num, gold_arg_num, arg_idn_num + arg_idn_coref_num) role_prec, role_rec, role_f = compute_f1( pred_arg_num, gold_arg_num, arg_class_num + arg_class_coref_num) print('Coref Role identification: P: {:.2f}, R: {:.2f}, F: {:.2f}'.format( role_id_prec * 100.0, role_id_rec * 100.0, role_id_f * 100.0)) print('Coref Role: P: {:.2f}, R: {:.2f}, F: {:.2f}'.format( role_prec * 100.0, role_rec * 100.0, role_f * 100.0))