import matplotlib.pyplot as plt import matplotlib.patches as patches from matplotlib.patches import Patch import io from PIL import Image, ImageDraw import numpy as np import csv import pandas as pd from torchvision import transforms from transformers import AutoModelForObjectDetection import torch import easyocr import gradio as gr class MaxResize(object): def __init__(self, max_size=800): self.max_size = max_size def __call__(self, image): width, height = image.size current_max_size = max(width, height) scale = self.max_size / current_max_size resized_image = image.resize((int(round(scale*width)), int(round(scale*height)))) return resized_image detection_transform = transforms.Compose([ MaxResize(800), transforms.ToTensor(), transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225]) ]) structure_transform = transforms.Compose([ MaxResize(1000), transforms.ToTensor(), transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225]) ]) # load table detection model # processor = TableTransformerImageProcessor(max_size=800) model = AutoModelForObjectDetection.from_pretrained("microsoft/table-transformer-detection", revision="no_timm") # load table structure recognition model # structure_processor = TableTransformerImageProcessor(max_size=1000) structure_model = AutoModelForObjectDetection.from_pretrained("microsoft/table-transformer-structure-recognition-v1.1-all") # load EasyOCR reader reader = easyocr.Reader(['en']) # for output bounding box post-processing def box_cxcywh_to_xyxy(x): x_c, y_c, w, h = x.unbind(-1) b = [(x_c - 0.5 * w), (y_c - 0.5 * h), (x_c + 0.5 * w), (y_c + 0.5 * h)] return torch.stack(b, dim=1) def rescale_bboxes(out_bbox, size): width, height = size boxes = box_cxcywh_to_xyxy(out_bbox) boxes = boxes * torch.tensor([width, height, width, height], dtype=torch.float32) return boxes def outputs_to_objects(outputs, img_size, id2label): m = outputs.logits.softmax(-1).max(-1) pred_labels = list(m.indices.detach().cpu().numpy())[0] pred_scores = list(m.values.detach().cpu().numpy())[0] pred_bboxes = outputs['pred_boxes'].detach().cpu()[0] pred_bboxes = [elem.tolist() for elem in rescale_bboxes(pred_bboxes, img_size)] objects = [] for label, score, bbox in zip(pred_labels, pred_scores, pred_bboxes): class_label = id2label[int(label)] if not class_label == 'no object': objects.append({'label': class_label, 'score': float(score), 'bbox': [float(elem) for elem in bbox]}) return objects def fig2img(fig): """Convert a Matplotlib figure to a PIL Image and return it""" buf = io.BytesIO() fig.savefig(buf) buf.seek(0) image = Image.open(buf) return image def visualize_detected_tables(img, det_tables): plt.imshow(img, interpolation="lanczos") fig = plt.gcf() fig.set_size_inches(20, 20) ax = plt.gca() for det_table in det_tables: bbox = det_table['bbox'] if det_table['label'] == 'table': facecolor = (1, 0, 0.45) edgecolor = (1, 0, 0.45) alpha = 0.3 linewidth = 2 hatch='//////' elif det_table['label'] == 'table rotated': facecolor = (0.95, 0.6, 0.1) edgecolor = (0.95, 0.6, 0.1) alpha = 0.3 linewidth = 2 hatch='//////' else: continue rect = patches.Rectangle(bbox[:2], bbox[2]-bbox[0], bbox[3]-bbox[1], linewidth=linewidth, edgecolor='none',facecolor=facecolor, alpha=0.1) ax.add_patch(rect) rect = patches.Rectangle(bbox[:2], bbox[2]-bbox[0], bbox[3]-bbox[1], linewidth=linewidth, edgecolor=edgecolor,facecolor='none',linestyle='-', alpha=alpha) ax.add_patch(rect) rect = patches.Rectangle(bbox[:2], bbox[2]-bbox[0], bbox[3]-bbox[1], linewidth=0, edgecolor=edgecolor,facecolor='none',linestyle='-', hatch=hatch, alpha=0.2) ax.add_patch(rect) plt.xticks([], []) plt.yticks([], []) legend_elements = [Patch(facecolor=(1, 0, 0.45), edgecolor=(1, 0, 0.45), label='Table', hatch='//////', alpha=0.3), Patch(facecolor=(0.95, 0.6, 0.1), edgecolor=(0.95, 0.6, 0.1), label='Table (rotated)', hatch='//////', alpha=0.3)] plt.legend(handles=legend_elements, bbox_to_anchor=(0.5, -0.02), loc='upper center', borderaxespad=0, fontsize=10, ncol=2) plt.gcf().set_size_inches(10, 10) plt.axis('off') return fig def detect_and_crop_table(image): # prepare image for the model # pixel_values = processor(image, return_tensors="pt").pixel_values pixel_values = detection_transform(image).unsqueeze(0) # forward pass with torch.no_grad(): outputs = model(pixel_values) # postprocess to get detected tables id2label = model.config.id2label id2label[len(model.config.id2label)] = "no object" detected_tables = outputs_to_objects(outputs, image.size, id2label) # visualize # fig = visualize_detected_tables(image, detected_tables) # image = fig2img(fig) # crop first detected table out of image cropped_table = image.crop(detected_tables[0]["bbox"]) return cropped_table def recognize_table(image): # prepare image for the model # pixel_values = structure_processor(images=image, return_tensors="pt").pixel_values pixel_values = structure_transform(image).unsqueeze(0) # forward pass with torch.no_grad(): outputs = structure_model(pixel_values) # postprocess to get individual elements id2label = structure_model.config.id2label id2label[len(structure_model.config.id2label)] = "no object" cells = outputs_to_objects(outputs, image.size, id2label) # visualize cells on cropped table draw = ImageDraw.Draw(image) for cell in cells: draw.rectangle(cell["bbox"], outline="red") return image, cells def get_cell_coordinates_by_row(table_data): # Extract rows and columns rows = [entry for entry in table_data if entry['label'] == 'table row'] columns = [entry for entry in table_data if entry['label'] == 'table column'] # Sort rows and columns by their Y and X coordinates, respectively rows.sort(key=lambda x: x['bbox'][1]) columns.sort(key=lambda x: x['bbox'][0]) # Function to find cell coordinates def find_cell_coordinates(row, column): cell_bbox = [column['bbox'][0], row['bbox'][1], column['bbox'][2], row['bbox'][3]] return cell_bbox # Generate cell coordinates and count cells in each row cell_coordinates = [] for row in rows: row_cells = [] for column in columns: cell_bbox = find_cell_coordinates(row, column) row_cells.append({'column': column['bbox'], 'cell': cell_bbox}) # Sort cells in the row by X coordinate row_cells.sort(key=lambda x: x['column'][0]) # Append row information to cell_coordinates cell_coordinates.append({'row': row['bbox'], 'cells': row_cells, 'cell_count': len(row_cells)}) # Sort rows from top to bottom cell_coordinates.sort(key=lambda x: x['row'][1]) return cell_coordinates def apply_ocr(cell_coordinates, cropped_table): # let's OCR row by row data = dict() max_num_columns = 0 for idx, row in enumerate(cell_coordinates): row_text = [] for cell in row["cells"]: # crop cell out of image cell_image = np.array(cropped_table.crop(cell["cell"])) # apply OCR result = reader.readtext(np.array(cell_image)) if len(result) > 0: text = " ".join([x[1] for x in result]) row_text.append(text) if len(row_text) > max_num_columns: max_num_columns = len(row_text) data[str(idx)] = row_text # pad rows which don't have max_num_columns elements # to make sure all rows have the same number of columns for idx, row_data in data.copy().items(): if len(row_data) != max_num_columns: row_data = row_data + ["" for _ in range(max_num_columns - len(row_data))] data[str(idx)] = row_data # write to csv with open('output.csv','w') as result_file: wr = csv.writer(result_file, dialect='excel') for row, row_text in data.items(): wr.writerow(row_text) # return as Pandas dataframe df = pd.read_csv('output.csv') return df, data def process_pdf(image): cropped_table = detect_and_crop_table(image) image, cells = recognize_table(cropped_table) cell_coordinates = get_cell_coordinates_by_row(cells) df, data = apply_ocr(cell_coordinates, image) return image, df, data title = "Demo: table detection & recognition with Table Transformer (TATR)." description = """Demo for table extraction with the Table Transformer. First, table detection is performed on the input image using https://huggingface.co/microsoft/table-transformer-detection, after which the detected table is extracted and https://huggingface.co/microsoft/table-transformer-structure-recognition-v1.1-all is leveraged to recognize the individual rows, columns and cells. OCR is then performed per cell, row by row.""" examples = [['image.png', 'mistral_paper.png']] app = gr.Interface(fn=process_pdf, inputs=gr.Image(type="pil"), outputs=[gr.Image(type="pil", label="Detected table"), gr.Dataframe(label="Table as CSV"), gr.JSON(label="Data as JSON")], title=title, description=description, examples=examples) app.queue() app.launch(debug=True)