#!/usr/local/bin/python3 # avenir-python: Machine Learning # Author: Pranab Ghosh # # Licensed under the Apache License, Version 2.0 (the "License"); you # may not use this file except in compliance with the License. You may # obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or # implied. See the License for the specific language governing # permissions and limitations under the License. # Package imports import os import sys import matplotlib.pyplot as plt import numpy as np import sklearn as sk import matplotlib import random import jprops from sklearn.ensemble import RandomForestClassifier from random import randint sys.path.append(os.path.abspath("../lib")) from util import * from mlutil import * from pasearch import * from bacl import * # gradient boosting classification class RandomForest(BaseClassifier): def __init__(self, configFile): defValues = {} defValues["common.mode"] = ("training", None) defValues["common.model.directory"] = ("model", None) defValues["common.model.file"] = (None, None) defValues["common.preprocessing"] = (None, None) defValues["common.verbose"] = (False, None) defValues["train.data.file"] = (None, "missing training data file") defValues["train.data.fields"] = (None, "missing training data field ordinals") defValues["train.data.feature.fields"] = (None, "missing training data feature field ordinals") defValues["train.data.class.field"] = (None, "missing class field ordinal") defValues["train.validation"] = ("kfold", None) defValues["train.num.folds"] = (5, None) defValues["train.num.trees"] = (100, None) defValues["train.split.criterion"] = ("gini", None) defValues["train.max.depth"] = (None, None) defValues["train.min.samples.split"] = (4, None) defValues["train.min.samples.leaf"] = (2, None) defValues["train.min.weight.fraction.leaf"] = (0, None) defValues["train.max.features"] = ("auto", None) defValues["train.max.leaf.nodes"] = (None, None) defValues["train.min.impurity.decrease"] = (0, None) defValues["train.min.impurity.split"] = (1.0e-07, None) defValues["train.bootstrap"] = (True, None) defValues["train.oob.score"] = (False, None) defValues["train.num.jobs"] = (1, None) defValues["train.random.state"] = (None, None) defValues["train.verbose"] = (0, None) defValues["train.warm.start"] = (False, None) defValues["train.success.criterion"] = ("error", None) defValues["train.model.save"] = (False, None) defValues["train.score.method"] = ("accuracy", None) defValues["train.search.param.strategy"] = (None, None) defValues["train.search.params"] = (None, None) defValues["predict.data.file"] = (None, None) defValues["predict.data.fields"] = (None, "missing data field ordinals") defValues["predict.data.feature.fields"] = (None, "missing data feature field ordinals") defValues["predict.use.saved.model"] = (False, None) defValues["validate.data.file"] = (None, "missing validation data file") defValues["validate.data.fields"] = (None, "missing validation data field ordinals") defValues["validate.data.feature.fields"] = (None, "missing validation data feature field ordinals") defValues["validate.data.class.field"] = (None, "missing class field ordinal") defValues["validate.use.saved.model"] = (False, None) defValues["validate.score.method"] = ("accuracy", None) super(RandomForest, self).__init__(configFile, defValues, __name__) # builds model object def buildModel(self): self.logger.info("...building random forest model") numTrees = self.config.getIntConfig("train.num.trees")[0] splitCriterion = self.config.getStringConfig("train.split.criterion")[0] maxDepth = self.config.getStringConfig("train.max.depth")[0] maxDepth = typedValue(maxDepth) minSamplesSplit = self.config.getStringConfig("train.min.samples.split")[0] minSamplesSplit = typedValue(minSamplesSplit) minSamplesLeaf = self.config.getStringConfig("train.min.samples.leaf")[0] minSamplesLeaf = typedValue(minSamplesLeaf) minWeightFractionLeaf = self.config.getFloatConfig("train.min.weight.fraction.leaf")[0] maxFeatures = self.config.getStringConfig("train.max.features")[0] maxFeatures = typedValue(maxFeatures) maxLeafNodes = self.config.getIntConfig("train.max.leaf.nodes")[0] minImpurityDecrease = self.config.getFloatConfig("train.min.impurity.decrease")[0] minImpurityDecrease = self.config.getFloatConfig("train.min.impurity.split")[0] bootstrap = self.config.getBooleanConfig("train.bootstrap")[0] oobScore = self.config.getBooleanConfig("train.oob.score")[0] numJobs = self.config.getIntConfig("train.num.jobs")[0] randomState = self.config.getIntConfig("train.random.state")[0] verbose = self.config.getIntConfig("train.verbose")[0] warmStart = self.config.getBooleanConfig("train.warm.start")[0] model = RandomForestClassifier(n_estimators=numTrees, criterion=splitCriterion, max_depth=maxDepth, \ min_samples_split=minSamplesSplit, min_samples_leaf=minSamplesLeaf, min_weight_fraction_leaf=minWeightFractionLeaf, \ max_features=maxFeatures, max_leaf_nodes=maxLeafNodes, min_impurity_decrease=minImpurityDecrease, \ min_impurity_split=None, bootstrap=bootstrap, oob_score=oobScore, n_jobs=numJobs, random_state=randomState, \ verbose=verbose, warm_start=warmStart, class_weight=None) self.classifier = model return self.classifier #predict probability with in memory data def predictProb(self, recs): # create model self.prepModel() #input record if type(recs) is str: featData = self.prepStringPredictData(recs) else: featData = recs if (featData.ndim == 1): featData = featData.reshape(1, -1) #predict self.logger.info("...predicting class probability") clsData = self.classifier.predict_proba(featData) return clsData