# Sharded Feature Extraction and K-means Application

This folder contains scripts for preparing HUBERT labels from tsv files, the
steps are:
1. feature extraction
2. k-means clustering
3. k-means application


## Data preparation

`*.tsv` files contains a list of audio, where each line is the root, and
following lines are the subpath for each audio:
```
<root-dir>
<audio-path-1>
<audio-path-2>
...
```


## Feature extraction

### MFCC feature
Suppose the tsv file is at `${tsv_dir}/${split}.tsv`. To extract 39-D
mfcc+delta+ddelta features for the 1st iteration HUBERT training, run:
```sh
python dump_mfcc_feature.py ${tsv_dir} ${split} ${nshard} ${rank} ${feat_dir}
```
This would shard the tsv file into `${nshard}` and extract features for the
`${rank}`-th shard, where rank is an integer in `[0, nshard-1]`. Features would
be saved at `${feat_dir}/${split}_${rank}_${nshard}.{npy,len}`.


### HUBERT feature
To extract features from the `${layer}`-th transformer layer of a trained
HUBERT model saved at `${ckpt_path}`, run:
```sh
python dump_hubert_feature.py ${tsv_dir} ${split} ${ckpt_path} ${layer} ${nshard} ${rank} ${feat_dir}
```
Features would also be saved at `${feat_dir}/${split}_${rank}_${nshard}.{npy,len}`.

- if out-of-memory, decrease the chunk size with `--max_chunk`


## K-means clustering
To fit a k-means model with `${n_clusters}` clusters on 10% of the `${split}` data, run
```sh
python learn_kmeans.py ${feat_dir} ${split} ${nshard} ${km_path} ${n_cluster} --percent 0.1
```
This saves the k-means model to `${km_path}`.

- set `--precent -1` to use all data
- more kmeans options can be found with `-h` flag


## K-means application
To apply a trained k-means model `${km_path}` to obtain labels for `${split}`, run
```sh
python dump_km_label.py ${feat_dir} ${split} ${km_path} ${nshard} ${rank} ${lab_dir}
```
This would extract labels for the `${rank}`-th shard out of `${nshard}` shards
and dump them to `${lab_dir}/${split}_${rank}_${shard}.km`


Finally, merge shards for `${split}` by running
```sh
for rank in $(seq 0 $((nshard - 1))); do
  cat $lab_dir/${split}_${rank}_${nshard}.km
done > $lab_dir/${split}.km
```