Spaces:
Running
on
Zero
Running
on
Zero
add decorators to visualizers instead of main function
Browse files
app.py
CHANGED
@@ -225,7 +225,8 @@ def run_structure_prediction(protein: ESMProtein, temperature: float, num_steps:
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except Exception as e:
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print(f"Error during structure prediction: {str(e)}")
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return None
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-
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def align_after_prediction(protein: ESMProtein, structure_prediction: ESMProtein) -> tuple[ESMProtein, float]:
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if structure_prediction is None:
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return None, float('inf')
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@@ -261,7 +262,8 @@ def align_after_prediction(protein: ESMProtein, structure_prediction: ESMProtein
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except Exception as e:
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print(f"Unexpected error during alignment: {str(e)}")
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return None, float('inf')
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-
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def visualize_after_pred(protein: ESMProtein, aligned: ESMProtein):
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if aligned is None:
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return None
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@@ -284,6 +286,7 @@ def protein_to_pdb(protein: ESMProtein):
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pdb_str += f"ATOM {i*37+j+1:5d} {atom:3s} {aa:3s} A{i+1:4d} {x:8.3f}{y:8.3f}{z:8.3f}\n"
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return pdb_str
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def prediction_visualization(pdb_file, num_runs: int, noise_level: float, num_frames: int, temperature: float, num_steps: int, progress=gr.Progress()):
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protein = get_protein(pdb_file)
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runs = []
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@@ -310,7 +313,6 @@ def prediction_visualization(pdb_file, num_runs: int, noise_level: float, num_fr
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view_data = visualize_after_pred(protein, best_aligned[1])
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return view_data, f"Best cRMSD: {best_aligned[0]:.4f}"
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-
@spaces.GPU
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def run_prediction(pdb_file, num_runs, noise_level, num_frames, temperature, num_steps, progress=gr.Progress()):
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try:
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if pdb_file is None:
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except Exception as e:
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print(f"Error during structure prediction: {str(e)}")
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return None
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+
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+
@spaces.GPU
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def align_after_prediction(protein: ESMProtein, structure_prediction: ESMProtein) -> tuple[ESMProtein, float]:
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if structure_prediction is None:
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return None, float('inf')
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except Exception as e:
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print(f"Unexpected error during alignment: {str(e)}")
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return None, float('inf')
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+
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+
@spaces.GPU
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def visualize_after_pred(protein: ESMProtein, aligned: ESMProtein):
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if aligned is None:
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return None
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pdb_str += f"ATOM {i*37+j+1:5d} {atom:3s} {aa:3s} A{i+1:4d} {x:8.3f}{y:8.3f}{z:8.3f}\n"
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return pdb_str
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+
@spaces.GPU
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def prediction_visualization(pdb_file, num_runs: int, noise_level: float, num_frames: int, temperature: float, num_steps: int, progress=gr.Progress()):
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protein = get_protein(pdb_file)
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runs = []
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view_data = visualize_after_pred(protein, best_aligned[1])
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return view_data, f"Best cRMSD: {best_aligned[0]:.4f}"
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def run_prediction(pdb_file, num_runs, noise_level, num_frames, temperature, num_steps, progress=gr.Progress()):
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try:
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if pdb_file is None:
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