from transformers import AutoTokenizer, AutoModel from datetime import datetime import torch import pickle #Mean Pooling - Take attention mask into account for correct averaging def mean_pooling(model_output, attention_mask): token_embeddings = model_output[0] #First element of model_output contains all token embeddings input_mask_expanded = attention_mask.unsqueeze(-1).expand(token_embeddings.size()).float() sum_embeddings = torch.sum(token_embeddings * input_mask_expanded, 1) sum_mask = torch.clamp(input_mask_expanded.sum(1), min=1e-9) return sum_embeddings / sum_mask def calculateEmbeddings(sentences,tokenizer,model): tokenized_sentences = tokenizer(sentences, padding=True, truncation=True, max_length=128, return_tensors='pt') with torch.no_grad(): model_output = model(**tokenized_sentences) sentence_embeddings = mean_pooling(model_output, tokenized_sentences['attention_mask']) return sentence_embeddings def saveToDisc(embeddings, filename): with open(filename, "ab") as f: pickle.dump(embeddings, f, protocol=pickle.HIGHEST_PROTOCOL) def saveToDisc(sentences, embeddings, filename): with open(filename, "ab") as f: pickle.dump({'sentences': sentences, 'embeddings': embeddings}, f, protocol=pickle.HIGHEST_PROTOCOL) dt = datetime.now() datetime_formatted = dt.strftime('%Y-%m-%d_%H:%M:%S') batch_size = 1000 input_text_file = 'data/preprocessed/shortened_abstracts_hu_2021_09_01.txt' output_embeddings_file = f'data/preprocessed/embeddings_{batch_size}_batches_at_{datetime_formatted}.pkl' multilingual_checkpoint = 'sentence-transformers/paraphrase-multilingual-MiniLM-L12-v2' tokenizer = AutoTokenizer.from_pretrained(multilingual_checkpoint) model = AutoModel.from_pretrained(multilingual_checkpoint) total_read = 0 total_read_limit = 3 * batch_size with open(input_text_file) as f: while total_read < total_read_limit: count = 0 sentences = [] line = 'init' while line and count < batch_size: line = f.readline() sentences.append(line) count += 1 sentence_embeddings = calculateEmbeddings(sentences,tokenizer,model) saveToDisc(sentences, sentence_embeddings,output_embeddings_file) total_read += count