chris1nexus commited on
Commit
cd94e60
β€’
1 Parent(s): 877ebc7
Files changed (2) hide show
  1. README.md +1 -1
  2. app.py +11 -5
README.md CHANGED
@@ -1,5 +1,5 @@
1
  ---
2
- title: MedFormer
3
  emoji: πŸƒ
4
  colorFrom: purple
5
  colorTo: yellow
 
1
  ---
2
+ title: AioMedica
3
  emoji: πŸƒ
4
  colorFrom: purple
5
  colorTo: yellow
app.py CHANGED
@@ -45,7 +45,7 @@ def main():
45
  os.environ['GT_WEIGHT_PATH'] = os.path.join(os.environ['WEIGHTS_PATH'], 'graph_transformer', 'GraphCAM.pth')
46
 
47
 
48
- st.set_page_config(page_title="",layout='wide')
49
  predictor = load_model()#Predictor()
50
 
51
 
@@ -90,6 +90,7 @@ def main():
90
  <a href="https://github.com/Chris1nexus/inference-graph-transformer" target="_blank">Project Repository</a>
91
  </p>
92
  <p class="aligncenter">
 
93
  <a href="https://github.com/Chris1nexus/inference-graph-transformer" target="_blank">
94
  <img src="https://img.shields.io/github/stars/Chris1nexus/inference-graph-transformer?style=social"/>
95
  </a>
@@ -105,11 +106,12 @@ def main():
105
  )
106
 
107
 
108
-
109
  if choice == "About":
110
  st.title(choice)
111
-
112
-
 
 
113
 
114
  if choice == "Visualize WSI slide":
115
  st.title(choice)
@@ -132,10 +134,14 @@ def main():
132
 
133
  if choice == "Cancer Detection":
134
  state = dict()
135
-
136
  st.title(choice)
137
  st.markdown(DETECT_TEXT)
138
  uploaded_file = st.file_uploader("Choose a WSI slide file to diagnose (.svs)")
 
 
 
 
139
  if uploaded_file is not None:
140
  # To read file as bytes:
141
  #print(uploaded_file)
 
45
  os.environ['GT_WEIGHT_PATH'] = os.path.join(os.environ['WEIGHTS_PATH'], 'graph_transformer', 'GraphCAM.pth')
46
 
47
 
48
+ #st.set_page_config(page_title="",layout='wide')
49
  predictor = load_model()#Predictor()
50
 
51
 
 
90
  <a href="https://github.com/Chris1nexus/inference-graph-transformer" target="_blank">Project Repository</a>
91
  </p>
92
  <p class="aligncenter">
93
+
94
  <a href="https://github.com/Chris1nexus/inference-graph-transformer" target="_blank">
95
  <img src="https://img.shields.io/github/stars/Chris1nexus/inference-graph-transformer?style=social"/>
96
  </a>
 
106
  )
107
 
108
 
 
109
  if choice == "About":
110
  st.title(choice)
111
+ README = requests.get("https://raw.githubusercontent.com/Chris1nexus/inference-graph-transformer/master/README.md").text
112
+ README = str(README).replace('width="1200"','width="700"')
113
+ # st.title(choose)
114
+ st.markdown(README, unsafe_allow_html=True)
115
 
116
  if choice == "Visualize WSI slide":
117
  st.title(choice)
 
134
 
135
  if choice == "Cancer Detection":
136
  state = dict()
137
+
138
  st.title(choice)
139
  st.markdown(DETECT_TEXT)
140
  uploaded_file = st.file_uploader("Choose a WSI slide file to diagnose (.svs)")
141
+ st.markdown("Examples can be chosen at the [GDC Data repository](https://portal.gdc.cancer.gov/repository?facetTab=cases&filters=%7B%22op%22%3A%22and%22%2C%22content%22%3A%5B%7B%22op%22%3A%22in%22%2C%22content%22%3A%7B%22field%22%3A%22cases.primary_site%22%2C%22value%22%3A%5B%22bronchus%20and%20lung%22%5D%7D%7D%2C%7B%22op%22%3A%22in%22%2C%22content%22%3A%7B%22field%22%3A%22cases.project.program.name%22%2C%22value%22%3A%5B%22TCGA%22%5D%7D%7D%2C%7B%22op%22%3A%22in%22%2C%22content%22%3A%7B%22field%22%3A%22cases.project.project_id%22%2C%22value%22%3A%5B%22TCGA-LUAD%22%2C%22TCGA-LUSC%22%5D%7D%7D%2C%7B%22op%22%3A%22in%22%2C%22content%22%3A%7B%22field%22%3A%22files.experimental_strategy%22%2C%22value%22%3A%5B%22Tissue%20Slide%22%5D%7D%7D%5D%7D)")
142
+ st.markdown("Alternatively, for simplicity few test cases are provided at the [drive link](https://drive.google.com/drive/folders/1u3SQa2dytZBHHh6eXTlMKY-pZGZ-pwkk?usp=share_link)")
143
+
144
+
145
  if uploaded_file is not None:
146
  # To read file as bytes:
147
  #print(uploaded_file)