# Copyright (c) Facebook, Inc. and its affiliates. import copy import itertools import numpy as np from typing import Any, Iterator, List, Union import pycocotools.mask as mask_util import torch from torch import device from detectron2.layers.roi_align import ROIAlign from detectron2.utils.memory import retry_if_cuda_oom from .boxes import Boxes def polygon_area(x, y): # Using the shoelace formula # https://stackoverflow.com/questions/24467972/calculate-area-of-polygon-given-x-y-coordinates return 0.5 * np.abs(np.dot(x, np.roll(y, 1)) - np.dot(y, np.roll(x, 1))) def polygons_to_bitmask(polygons: List[np.ndarray], height: int, width: int) -> np.ndarray: """ Args: polygons (list[ndarray]): each array has shape (Nx2,) height, width (int) Returns: ndarray: a bool mask of shape (height, width) """ assert len(polygons) > 0, "COCOAPI does not support empty polygons" rles = mask_util.frPyObjects(polygons, height, width) rle = mask_util.merge(rles) return mask_util.decode(rle).astype(np.bool) def rasterize_polygons_within_box( polygons: List[np.ndarray], box: np.ndarray, mask_size: int ) -> torch.Tensor: """ Rasterize the polygons into a mask image and crop the mask content in the given box. The cropped mask is resized to (mask_size, mask_size). This function is used when generating training targets for mask head in Mask R-CNN. Given original ground-truth masks for an image, new ground-truth mask training targets in the size of `mask_size x mask_size` must be provided for each predicted box. This function will be called to produce such targets. Args: polygons (list[ndarray[float]]): a list of polygons, which represents an instance. box: 4-element numpy array mask_size (int): Returns: Tensor: BoolTensor of shape (mask_size, mask_size) """ # 1. Shift the polygons w.r.t the boxes w, h = box[2] - box[0], box[3] - box[1] polygons = copy.deepcopy(polygons) for p in polygons: p[0::2] = p[0::2] - box[0] p[1::2] = p[1::2] - box[1] # 2. Rescale the polygons to the new box size # max() to avoid division by small number ratio_h = mask_size / max(h, 0.1) ratio_w = mask_size / max(w, 0.1) if ratio_h == ratio_w: for p in polygons: p *= ratio_h else: for p in polygons: p[0::2] *= ratio_w p[1::2] *= ratio_h # 3. Rasterize the polygons with coco api mask = polygons_to_bitmask(polygons, mask_size, mask_size) mask = torch.from_numpy(mask) return mask class BitMasks: """ This class stores the segmentation masks for all objects in one image, in the form of bitmaps. Attributes: tensor: bool Tensor of N,H,W, representing N instances in the image. """ def __init__(self, tensor: Union[torch.Tensor, np.ndarray]): """ Args: tensor: bool Tensor of N,H,W, representing N instances in the image. """ device = tensor.device if isinstance(tensor, torch.Tensor) else torch.device("cpu") tensor = torch.as_tensor(tensor, dtype=torch.bool, device=device) assert tensor.dim() == 3, tensor.size() self.image_size = tensor.shape[1:] self.tensor = tensor @torch.jit.unused def to(self, *args: Any, **kwargs: Any) -> "BitMasks": return BitMasks(self.tensor.to(*args, **kwargs)) @property def device(self) -> torch.device: return self.tensor.device @torch.jit.unused def __getitem__(self, item: Union[int, slice, torch.BoolTensor]) -> "BitMasks": """ Returns: BitMasks: Create a new :class:`BitMasks` by indexing. The following usage are allowed: 1. `new_masks = masks[3]`: return a `BitMasks` which contains only one mask. 2. `new_masks = masks[2:10]`: return a slice of masks. 3. `new_masks = masks[vector]`, where vector is a torch.BoolTensor with `length = len(masks)`. Nonzero elements in the vector will be selected. Note that the returned object might share storage with this object, subject to Pytorch's indexing semantics. """ if isinstance(item, int): return BitMasks(self.tensor[item].view(1, -1)) m = self.tensor[item] assert m.dim() == 3, "Indexing on BitMasks with {} returns a tensor with shape {}!".format( item, m.shape ) return BitMasks(m) @torch.jit.unused def __iter__(self) -> torch.Tensor: yield from self.tensor @torch.jit.unused def __repr__(self) -> str: s = self.__class__.__name__ + "(" s += "num_instances={})".format(len(self.tensor)) return s def __len__(self) -> int: return self.tensor.shape[0] def nonempty(self) -> torch.Tensor: """ Find masks that are non-empty. Returns: Tensor: a BoolTensor which represents whether each mask is empty (False) or non-empty (True). """ return self.tensor.flatten(1).any(dim=1) @staticmethod def from_polygon_masks( polygon_masks: Union["PolygonMasks", List[List[np.ndarray]]], height: int, width: int ) -> "BitMasks": """ Args: polygon_masks (list[list[ndarray]] or PolygonMasks) height, width (int) """ if isinstance(polygon_masks, PolygonMasks): polygon_masks = polygon_masks.polygons masks = [polygons_to_bitmask(p, height, width) for p in polygon_masks] return BitMasks(torch.stack([torch.from_numpy(x) for x in masks])) @staticmethod def from_roi_masks(roi_masks: "ROIMasks", height: int, width: int) -> "BitMasks": """ Args: roi_masks: height, width (int): """ return roi_masks.to_bitmasks(height, width) def crop_and_resize(self, boxes: torch.Tensor, mask_size: int) -> torch.Tensor: """ Crop each bitmask by the given box, and resize results to (mask_size, mask_size). This can be used to prepare training targets for Mask R-CNN. It has less reconstruction error compared to rasterization with polygons. However we observe no difference in accuracy, but BitMasks requires more memory to store all the masks. Args: boxes (Tensor): Nx4 tensor storing the boxes for each mask mask_size (int): the size of the rasterized mask. Returns: Tensor: A bool tensor of shape (N, mask_size, mask_size), where N is the number of predicted boxes for this image. """ assert len(boxes) == len(self), "{} != {}".format(len(boxes), len(self)) device = self.tensor.device batch_inds = torch.arange(len(boxes), device=device).to(dtype=boxes.dtype)[:, None] rois = torch.cat([batch_inds, boxes], dim=1) # Nx5 bit_masks = self.tensor.to(dtype=torch.float32) rois = rois.to(device=device) output = ( ROIAlign((mask_size, mask_size), 1.0, 0, aligned=True) .forward(bit_masks[:, None, :, :], rois) .squeeze(1) ) output = output >= 0.5 return output def get_bounding_boxes(self) -> Boxes: """ Returns: Boxes: tight bounding boxes around bitmasks. If a mask is empty, it's bounding box will be all zero. """ boxes = torch.zeros(self.tensor.shape[0], 4, dtype=torch.float32) x_any = torch.any(self.tensor, dim=1) y_any = torch.any(self.tensor, dim=2) for idx in range(self.tensor.shape[0]): x = torch.where(x_any[idx, :])[0] y = torch.where(y_any[idx, :])[0] if len(x) > 0 and len(y) > 0: boxes[idx, :] = torch.as_tensor( [x[0], y[0], x[-1] + 1, y[-1] + 1], dtype=torch.float32 ) return Boxes(boxes) @staticmethod def cat(bitmasks_list: List["BitMasks"]) -> "BitMasks": """ Concatenates a list of BitMasks into a single BitMasks Arguments: bitmasks_list (list[BitMasks]) Returns: BitMasks: the concatenated BitMasks """ assert isinstance(bitmasks_list, (list, tuple)) assert len(bitmasks_list) > 0 assert all(isinstance(bitmask, BitMasks) for bitmask in bitmasks_list) cat_bitmasks = type(bitmasks_list[0])(torch.cat([bm.tensor for bm in bitmasks_list], dim=0)) return cat_bitmasks class PolygonMasks: """ This class stores the segmentation masks for all objects in one image, in the form of polygons. Attributes: polygons: list[list[ndarray]]. Each ndarray is a float64 vector representing a polygon. """ def __init__(self, polygons: List[List[Union[torch.Tensor, np.ndarray]]]): """ Arguments: polygons (list[list[np.ndarray]]): The first level of the list correspond to individual instances, the second level to all the polygons that compose the instance, and the third level to the polygon coordinates. The third level array should have the format of [x0, y0, x1, y1, ..., xn, yn] (n >= 3). """ if not isinstance(polygons, list): raise ValueError( "Cannot create PolygonMasks: Expect a list of list of polygons per image. " "Got '{}' instead.".format(type(polygons)) ) def _make_array(t: Union[torch.Tensor, np.ndarray]) -> np.ndarray: # Use float64 for higher precision, because why not? # Always put polygons on CPU (self.to is a no-op) since they # are supposed to be small tensors. # May need to change this assumption if GPU placement becomes useful if isinstance(t, torch.Tensor): t = t.cpu().numpy() return np.asarray(t).astype("float64") def process_polygons( polygons_per_instance: List[Union[torch.Tensor, np.ndarray]] ) -> List[np.ndarray]: if not isinstance(polygons_per_instance, list): raise ValueError( "Cannot create polygons: Expect a list of polygons per instance. " "Got '{}' instead.".format(type(polygons_per_instance)) ) # transform each polygon to a numpy array polygons_per_instance = [_make_array(p) for p in polygons_per_instance] for polygon in polygons_per_instance: if len(polygon) % 2 != 0 or len(polygon) < 6: raise ValueError(f"Cannot create a polygon from {len(polygon)} coordinates.") return polygons_per_instance self.polygons: List[List[np.ndarray]] = [ process_polygons(polygons_per_instance) for polygons_per_instance in polygons ] def to(self, *args: Any, **kwargs: Any) -> "PolygonMasks": return self @property def device(self) -> torch.device: return torch.device("cpu") def get_bounding_boxes(self) -> Boxes: """ Returns: Boxes: tight bounding boxes around polygon masks. """ boxes = torch.zeros(len(self.polygons), 4, dtype=torch.float32) for idx, polygons_per_instance in enumerate(self.polygons): minxy = torch.as_tensor([float("inf"), float("inf")], dtype=torch.float32) maxxy = torch.zeros(2, dtype=torch.float32) for polygon in polygons_per_instance: coords = torch.from_numpy(polygon).view(-1, 2).to(dtype=torch.float32) minxy = torch.min(minxy, torch.min(coords, dim=0).values) maxxy = torch.max(maxxy, torch.max(coords, dim=0).values) boxes[idx, :2] = minxy boxes[idx, 2:] = maxxy return Boxes(boxes) def nonempty(self) -> torch.Tensor: """ Find masks that are non-empty. Returns: Tensor: a BoolTensor which represents whether each mask is empty (False) or not (True). """ keep = [1 if len(polygon) > 0 else 0 for polygon in self.polygons] return torch.from_numpy(np.asarray(keep, dtype=np.bool)) def __getitem__(self, item: Union[int, slice, List[int], torch.BoolTensor]) -> "PolygonMasks": """ Support indexing over the instances and return a `PolygonMasks` object. `item` can be: 1. An integer. It will return an object with only one instance. 2. A slice. It will return an object with the selected instances. 3. A list[int]. It will return an object with the selected instances, correpsonding to the indices in the list. 4. A vector mask of type BoolTensor, whose length is num_instances. It will return an object with the instances whose mask is nonzero. """ if isinstance(item, int): selected_polygons = [self.polygons[item]] elif isinstance(item, slice): selected_polygons = self.polygons[item] elif isinstance(item, list): selected_polygons = [self.polygons[i] for i in item] elif isinstance(item, torch.Tensor): # Polygons is a list, so we have to move the indices back to CPU. if item.dtype == torch.bool: assert item.dim() == 1, item.shape item = item.nonzero().squeeze(1).cpu().numpy().tolist() elif item.dtype in [torch.int32, torch.int64]: item = item.cpu().numpy().tolist() else: raise ValueError("Unsupported tensor dtype={} for indexing!".format(item.dtype)) selected_polygons = [self.polygons[i] for i in item] return PolygonMasks(selected_polygons) def __iter__(self) -> Iterator[List[np.ndarray]]: """ Yields: list[ndarray]: the polygons for one instance. Each Tensor is a float64 vector representing a polygon. """ return iter(self.polygons) def __repr__(self) -> str: s = self.__class__.__name__ + "(" s += "num_instances={})".format(len(self.polygons)) return s def __len__(self) -> int: return len(self.polygons) def crop_and_resize(self, boxes: torch.Tensor, mask_size: int) -> torch.Tensor: """ Crop each mask by the given box, and resize results to (mask_size, mask_size). This can be used to prepare training targets for Mask R-CNN. Args: boxes (Tensor): Nx4 tensor storing the boxes for each mask mask_size (int): the size of the rasterized mask. Returns: Tensor: A bool tensor of shape (N, mask_size, mask_size), where N is the number of predicted boxes for this image. """ assert len(boxes) == len(self), "{} != {}".format(len(boxes), len(self)) device = boxes.device # Put boxes on the CPU, as the polygon representation is not efficient GPU-wise # (several small tensors for representing a single instance mask) boxes = boxes.to(torch.device("cpu")) results = [ rasterize_polygons_within_box(poly, box.numpy(), mask_size) for poly, box in zip(self.polygons, boxes) ] """ poly: list[list[float]], the polygons for one instance box: a tensor of shape (4,) """ if len(results) == 0: return torch.empty(0, mask_size, mask_size, dtype=torch.bool, device=device) return torch.stack(results, dim=0).to(device=device) def area(self): """ Computes area of the mask. Only works with Polygons, using the shoelace formula: https://stackoverflow.com/questions/24467972/calculate-area-of-polygon-given-x-y-coordinates Returns: Tensor: a vector, area for each instance """ area = [] for polygons_per_instance in self.polygons: area_per_instance = 0 for p in polygons_per_instance: area_per_instance += polygon_area(p[0::2], p[1::2]) area.append(area_per_instance) return torch.tensor(area) @staticmethod def cat(polymasks_list: List["PolygonMasks"]) -> "PolygonMasks": """ Concatenates a list of PolygonMasks into a single PolygonMasks Arguments: polymasks_list (list[PolygonMasks]) Returns: PolygonMasks: the concatenated PolygonMasks """ assert isinstance(polymasks_list, (list, tuple)) assert len(polymasks_list) > 0 assert all(isinstance(polymask, PolygonMasks) for polymask in polymasks_list) cat_polymasks = type(polymasks_list[0])( list(itertools.chain.from_iterable(pm.polygons for pm in polymasks_list)) ) return cat_polymasks class ROIMasks: """ Represent masks by N smaller masks defined in some ROIs. Once ROI boxes are given, full-image bitmask can be obtained by "pasting" the mask on the region defined by the corresponding ROI box. """ def __init__(self, tensor: torch.Tensor): """ Args: tensor: (N, M, M) mask tensor that defines the mask within each ROI. """ if tensor.dim() != 3: raise ValueError("ROIMasks must take a masks of 3 dimension.") self.tensor = tensor def to(self, device: torch.device) -> "ROIMasks": return ROIMasks(self.tensor.to(device)) @property def device(self) -> device: return self.tensor.device def __len__(self): return self.tensor.shape[0] def __getitem__(self, item) -> "ROIMasks": """ Returns: ROIMasks: Create a new :class:`ROIMasks` by indexing. The following usage are allowed: 1. `new_masks = masks[2:10]`: return a slice of masks. 2. `new_masks = masks[vector]`, where vector is a torch.BoolTensor with `length = len(masks)`. Nonzero elements in the vector will be selected. Note that the returned object might share storage with this object, subject to Pytorch's indexing semantics. """ t = self.tensor[item] if t.dim() != 3: raise ValueError( f"Indexing on ROIMasks with {item} returns a tensor with shape {t.shape}!" ) return ROIMasks(t) @torch.jit.unused def __repr__(self) -> str: s = self.__class__.__name__ + "(" s += "num_instances={})".format(len(self.tensor)) return s @torch.jit.unused def to_bitmasks(self, boxes: torch.Tensor, height, width, threshold=0.5): """ Args: """ from detectron2.layers import paste_masks_in_image paste = retry_if_cuda_oom(paste_masks_in_image) bitmasks = paste( self.tensor, boxes, (height, width), threshold=threshold, ) return BitMasks(bitmasks)